Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0043280 | XP_013470155.1 | 99.063 | 854 | 8 | 0 | 1 | 854 | 1 | 854 | 0.0 | 1764 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0043280 | sp|O23617|TPS5_ARATH | 77.374 | 853 | 189 | 3 | 1 | 850 | 1 | 852 | 0.0 | 1410 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043280 | Msa0137200 | 0.918658 | 1.187407e-86 | -8.615850e-47 |
| Msa0043280 | Msa0182380 | 0.881296 | 2.700223e-70 | -8.615850e-47 |
| Msa0043280 | Msa1404500 | 0.879697 | 1.008677e-69 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0043280 | MtrunA17_Chr1g0209251 | 99.063 | 854 | 8 | 0 | 1 | 854 | 1 | 854 | 0.0 | 1764 |
| Msa0043280 | MtrunA17_Chr8g0391971 | 72.824 | 850 | 223 | 5 | 1 | 843 | 1 | 849 | 0.0 | 1313 |
| Msa0043280 | MtrunA17_Chr1g0161531 | 72.535 | 852 | 224 | 6 | 1 | 843 | 1 | 851 | 0.0 | 1300 |
| Msa0043280 | MtrunA17_Chr4g0041381 | 64.947 | 853 | 288 | 3 | 1 | 844 | 1 | 851 | 0.0 | 1204 |
| Msa0043280 | MtrunA17_Chr8g0364961 | 66.982 | 845 | 271 | 2 | 1 | 843 | 1 | 839 | 0.0 | 1182 |
| Msa0043280 | MtrunA17_Chr4g0073041 | 60.050 | 801 | 310 | 7 | 52 | 846 | 47 | 843 | 0.0 | 1002 |
| Msa0043280 | MtrunA17_Chr3g0117891 | 53.766 | 770 | 353 | 2 | 83 | 850 | 3 | 771 | 0.0 | 844 |
| Msa0043280 | MtrunA17_Chr3g0107401 | 49.082 | 599 | 275 | 3 | 61 | 659 | 1 | 569 | 0.0 | 576 |
| Msa0043280 | MtrunA17_Chr2g0314621 | 34.321 | 810 | 464 | 20 | 1 | 792 | 74 | 833 | 1.01e-143 | 449 |
| Msa0043280 | MtrunA17_Chr8g0359371 | 35.714 | 756 | 423 | 21 | 58 | 792 | 83 | 796 | 1.69e-139 | 437 |
| Msa0043280 | MtrunA17_Chr8g0380051 | 38.082 | 365 | 201 | 10 | 37 | 398 | 54 | 396 | 8.03e-71 | 240 |
| Msa0043280 | MtrunA17_Chr8g0380061 | 32.877 | 438 | 244 | 14 | 387 | 806 | 5 | 410 | 1.56e-57 | 206 |
| Msa0043280 | MtrunA17_Chr3g0107421 | 48.485 | 165 | 85 | 0 | 252 | 416 | 1 | 165 | 2.14e-48 | 169 |
| Msa0043280 | MtrunA17_Chr3g0116901 | 43.243 | 185 | 85 | 3 | 8 | 192 | 6 | 170 | 7.20e-46 | 162 |
| Msa0043280 | MtrunA17_Chr3g0107411 | 51.701 | 147 | 71 | 0 | 443 | 589 | 1 | 147 | 1.87e-45 | 160 |
| Msa0043280 | MtrunA17_Chr3g0107431 | 42.241 | 116 | 52 | 2 | 58 | 173 | 9 | 109 | 1.09e-24 | 99.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0043280 | AT4G17770.1 | 77.374 | 853 | 189 | 3 | 1 | 850 | 1 | 852 | 0.0 | 1410 |
| Msa0043280 | AT4G17770.2 | 77.374 | 853 | 189 | 3 | 1 | 850 | 1 | 852 | 0.0 | 1410 |
| Msa0043280 | AT1G68020.2 | 71.114 | 862 | 224 | 6 | 1 | 843 | 1 | 856 | 0.0 | 1302 |
| Msa0043280 | AT1G68020.3 | 71.114 | 862 | 224 | 6 | 1 | 843 | 1 | 856 | 0.0 | 1302 |
| Msa0043280 | AT1G06410.3 | 67.217 | 848 | 266 | 4 | 1 | 844 | 1 | 840 | 0.0 | 1180 |
| Msa0043280 | AT1G06410.1 | 67.217 | 848 | 266 | 4 | 1 | 844 | 1 | 840 | 0.0 | 1180 |
| Msa0043280 | AT1G06410.2 | 67.217 | 848 | 266 | 4 | 1 | 844 | 1 | 840 | 0.0 | 1180 |
| Msa0043280 | AT1G23870.1 | 63.860 | 855 | 307 | 1 | 1 | 853 | 1 | 855 | 0.0 | 1158 |
| Msa0043280 | AT1G70290.1 | 62.426 | 841 | 309 | 3 | 1 | 839 | 1 | 836 | 0.0 | 1119 |
| Msa0043280 | AT1G60140.6 | 61.091 | 843 | 326 | 1 | 1 | 841 | 1 | 843 | 0.0 | 1109 |
| Msa0043280 | AT1G60140.1 | 61.091 | 843 | 326 | 1 | 1 | 841 | 1 | 843 | 0.0 | 1109 |
| Msa0043280 | AT1G60140.2 | 61.091 | 843 | 326 | 1 | 1 | 841 | 1 | 843 | 0.0 | 1109 |
| Msa0043280 | AT1G60140.5 | 61.091 | 843 | 326 | 1 | 1 | 841 | 1 | 843 | 0.0 | 1109 |
| Msa0043280 | AT1G60140.4 | 61.091 | 843 | 326 | 1 | 1 | 841 | 1 | 843 | 0.0 | 1109 |
| Msa0043280 | AT1G68020.1 | 71.701 | 682 | 170 | 5 | 1 | 665 | 1 | 676 | 0.0 | 1044 |
| Msa0043280 | AT2G18700.1 | 58.392 | 846 | 338 | 7 | 1 | 842 | 1 | 836 | 0.0 | 1043 |
| Msa0043280 | AT1G70290.2 | 58.621 | 841 | 303 | 4 | 1 | 839 | 1 | 798 | 0.0 | 1029 |
| Msa0043280 | AT1G60140.3 | 61.804 | 754 | 288 | 0 | 1 | 754 | 1 | 754 | 0.0 | 1006 |
| Msa0043280 | AT1G16980.1 | 34.761 | 817 | 462 | 26 | 60 | 850 | 13 | 784 | 2.13e-145 | 449 |
| Msa0043280 | AT1G78580.4 | 34.875 | 757 | 431 | 19 | 57 | 792 | 90 | 805 | 1.22e-141 | 443 |
| Msa0043280 | AT1G78580.1 | 34.875 | 757 | 431 | 19 | 57 | 792 | 90 | 805 | 1.22e-141 | 443 |
| Msa0043280 | AT1G78580.2 | 34.875 | 757 | 431 | 19 | 57 | 792 | 90 | 805 | 1.22e-141 | 443 |
| Msa0043280 | AT1G78580.3 | 34.875 | 757 | 431 | 19 | 57 | 792 | 90 | 805 | 1.22e-141 | 443 |
| Msa0043280 | AT4G27550.2 | 33.976 | 830 | 450 | 27 | 56 | 837 | 1 | 780 | 4.77e-137 | 427 |
| Msa0043280 | AT4G27550.1 | 34.135 | 832 | 455 | 28 | 56 | 837 | 1 | 789 | 1.25e-136 | 426 |
| Msa0043280 | AT1G16980.2 | 35.220 | 636 | 353 | 20 | 60 | 681 | 13 | 603 | 1.38e-117 | 372 |
Find 216 sgRNAs with CRISPR-Local
Find 412 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATGCAAGAATACCCTTTC+TGG | 0.172862 | 1_1:-74413552 | Msa0043280:five_prime_UTR |
| ACAGATAGCTTTCTAAAGTT+TGG | 0.197254 | 1_1:+74411101 | None:intergenic |
| ACATGTTATTTGTCGTTAAT+TGG | 0.202748 | 1_1:-74413605 | Msa0043280:five_prime_UTR |
| CTTCTGAATTCTGACCTTAT+AGG | 0.215099 | 1_1:-74412061 | Msa0043280:CDS |
| AGATGCTGGGGAATTGGTTT+TGG | 0.230491 | 1_1:-74411152 | Msa0043280:CDS |
| CCACCAGCATGCTCTTCTTT+TGG | 0.238177 | 1_1:+74411405 | None:intergenic |
| AGGAATCAGCTTAAAACTTT+TGG | 0.239280 | 1_1:-74411774 | Msa0043280:CDS |
| TGTGTCTTCCAAGTAATATT+TGG | 0.250613 | 1_1:+74408029 | None:intergenic |
| TTCTGAATTCTGACCTTATA+GGG | 0.267422 | 1_1:-74412060 | Msa0043280:CDS |
| CAAAAGAATAAGAATGAAAA+TGG | 0.273130 | 1_1:+74407684 | None:intergenic |
| CTTCCTGTTGGTATTCATAT+AGG | 0.288144 | 1_1:-74411911 | Msa0043280:CDS |
| CATCATTAAGCGGCGCGATT+CGG | 0.290810 | 1_1:-74411358 | Msa0043280:CDS |
| CAAGCACCGAGCGATTCTTT+TGG | 0.298713 | 1_1:-74411048 | Msa0043280:CDS |
| CCAAGAGTGGCAACTGTTGC+TGG | 0.299481 | 1_1:-74412733 | Msa0043280:CDS |
| CACAATGAAAACACAATTCT+TGG | 0.302805 | 1_1:+74410935 | None:intergenic |
| GAATTTGCAGACCGAGATTT+CGG | 0.306462 | 1_1:-74410523 | Msa0043280:CDS |
| CAGATAGCTTTCTAAAGTTT+GGG | 0.314076 | 1_1:+74411102 | None:intergenic |
| TCCTTTCCGCGGCCTCTAGC+AGG | 0.317442 | 1_1:+74411683 | None:intergenic |
| TAACGGAGAAGAAGAATCTT+TGG | 0.323144 | 1_1:-74413429 | Msa0043280:five_prime_UTR |
| TTGCTTAATGAGGAGATAAC+TGG | 0.325875 | 1_1:+74407938 | None:intergenic |
| CTTGGTTGGTTATCTTGTAT+TGG | 0.332117 | 1_1:-74407850 | Msa0043280:three_prime_UTR |
| TACGCACGATGTTGCATATT+GGG | 0.340179 | 1_1:-74411228 | Msa0043280:CDS |
| CCAAACCAGAGCACTCTCTT+TGG | 0.342936 | 1_1:+74410552 | None:intergenic |
| TCTTTCCTTTGTGCCTTCAA+TGG | 0.344898 | 1_1:+74412610 | None:intergenic |
| TTTGGATTATGATAGTACTA+TGG | 0.345249 | 1_1:-74411030 | Msa0043280:CDS |
| AGCTATGGATTCCGCCTTAA+TGG | 0.346795 | 1_1:-74411303 | Msa0043280:CDS |
| CTTTATACAAACAAAGAAAA+AGG | 0.348453 | 1_1:+74413628 | None:intergenic |
| GATCATCCTTTCTTGAGAAA+TGG | 0.352240 | 1_1:+74412651 | None:intergenic |
| GGTTTAACTTCCACAATGTA+TGG | 0.356426 | 1_1:+74410424 | None:intergenic |
| GCAACATCATCTTGCTCAAT+TGG | 0.362213 | 1_1:+74412469 | None:intergenic |
| TCTGTATATAACTGCATAAC+TGG | 0.363196 | 1_1:+74410601 | None:intergenic |
| AGGAGGAGATGCTGGGGAAT+TGG | 0.363586 | 1_1:-74411158 | Msa0043280:CDS |
| AAGCTTCCCATTCTTCAGTA+TGG | 0.363738 | 1_1:+74410665 | None:intergenic |
| AGATCAGATGAGGACATGTT+TGG | 0.364020 | 1_1:-74408132 | Msa0043280:CDS |
| TTCAGACTCCGGGACCATTA+AGG | 0.365240 | 1_1:+74411289 | None:intergenic |
| CTTCCGCTGTCGCCTGATCT+TGG | 0.368992 | 1_1:-74412331 | Msa0043280:CDS |
| CTAAGAAGTTCATCTCTAAC+AGG | 0.372241 | 1_1:+74412088 | None:intergenic |
| CCAATGCATAGAACAAAATC+TGG | 0.378049 | 1_1:+74408162 | None:intergenic |
| GTTGTATCGATCAAGATTAC+AGG | 0.378659 | 1_1:+74411584 | None:intergenic |
| GGTTCATGACTACCACTTGA+TGG | 0.384948 | 1_1:-74412206 | Msa0043280:CDS |
| ATCATCTGAGGAGGAGATGC+TGG | 0.385858 | 1_1:-74411166 | Msa0043280:CDS |
| GTCGATTTGATCGATCTCTT+TGG | 0.389308 | 1_1:-74412306 | Msa0043280:CDS |
| TTTGTTGCAGGGTGTGAGTA+AGG | 0.391370 | 1_1:-74408235 | Msa0043280:intron |
| CTTTCGGTCGTGAGAAGAAA+AGG | 0.392381 | 1_1:-74412759 | Msa0043280:CDS |
| ATCTGTTTCCAGTCAAAATC+AGG | 0.395840 | 1_1:+74410631 | None:intergenic |
| GTTTCTGTAAGCAACATCTA+TGG | 0.403151 | 1_1:-74412372 | Msa0043280:CDS |
| GCACAAAGGAAAGAGGAAAA+TGG | 0.406553 | 1_1:-74412601 | Msa0043280:CDS |
| ACATTGTTTCAGCTTATAAG+AGG | 0.408474 | 1_1:-74411073 | Msa0043280:CDS |
| AAAAGGATAAACGACACATT+TGG | 0.409911 | 1_1:-74411623 | Msa0043280:CDS |
| ATCATTAAGCGGCGCGATTC+GGG | 0.410018 | 1_1:-74411357 | Msa0043280:CDS |
| TAAGGAACTTCTTGATCATC+TGG | 0.414096 | 1_1:-74410488 | Msa0043280:CDS |
| TGCGTCATGAGAAGCATTAT+AGG | 0.414289 | 1_1:-74411259 | Msa0043280:CDS |
| GATCAGATGAGGACATGTTT+GGG | 0.414515 | 1_1:-74408131 | Msa0043280:CDS |
| CGAAAGTATGAAACCCTATA+AGG | 0.416886 | 1_1:+74412047 | None:intergenic |
| GTACGCACGATGTTGCATAT+TGG | 0.417861 | 1_1:-74411229 | Msa0043280:CDS |
| CCAGCAACAGTTGCCACTCT+TGG | 0.421922 | 1_1:+74412733 | None:intergenic |
| TCCCAACATTCTACTGCAAC+AGG | 0.422981 | 1_1:+74412003 | None:intergenic |
| TCTGATAACAATGCAACAAA+AGG | 0.423959 | 1_1:-74408193 | Msa0043280:CDS |
| TCCTGTTGCAGTAGAATGTT+GGG | 0.425459 | 1_1:-74412004 | Msa0043280:CDS |
| AATGAGGGGAAAGGTTGTTC+TGG | 0.426046 | 1_1:-74411720 | Msa0043280:CDS |
| ATCAGAACCAACACTGTTGT+TGG | 0.428130 | 1_1:+74412684 | None:intergenic |
| CCAAAGAGAGTGCTCTGGTT+TGG | 0.428765 | 1_1:-74410552 | Msa0043280:CDS |
| TCATGCGGCTCGCCGTCTTT+CGG | 0.430507 | 1_1:-74412775 | Msa0043280:CDS |
| AAGTAATATTTGGCTTTGCT+TGG | 0.430940 | 1_1:+74408039 | None:intergenic |
| CGGACGAAGGAAAAGGACTA+TGG | 0.431241 | 1_1:+74412128 | None:intergenic |
| GATGTTGAAACAATCTATAT+TGG | 0.433844 | 1_1:-74412514 | Msa0043280:CDS |
| GCGTAGCTTCTTGCAGGATC+TGG | 0.434843 | 1_1:-74411204 | Msa0043280:CDS |
| AGGATTTCGAGTAATAGCTT+TGG | 0.436633 | 1_1:-74411126 | Msa0043280:CDS |
| ACCCAAACAAAATCCTCATC+AGG | 0.437641 | 1_1:+74412226 | None:intergenic |
| CGAATCGCGCCGCTTAATGA+TGG | 0.438856 | 1_1:+74411359 | None:intergenic |
| TTGGGCGCGTAGCTTCTTGC+AGG | 0.441346 | 1_1:-74411210 | Msa0043280:CDS |
| CAAGAAAGGATGATCATTGT+TGG | 0.442753 | 1_1:-74412643 | Msa0043280:CDS |
| TCAAATCGACCACCAAGATC+AGG | 0.444062 | 1_1:+74412319 | None:intergenic |
| AAGGTCAAACTGTGATGCTT+GGG | 0.444131 | 1_1:-74411820 | Msa0043280:CDS |
| CAAAAGAATCGCTCGGTGCT+TGG | 0.449492 | 1_1:+74411049 | None:intergenic |
| TCACAGTTTGACCTTTGAAC+TGG | 0.450018 | 1_1:+74411828 | None:intergenic |
| AACGACACATTTGGAAGGCC+TGG | 0.452363 | 1_1:-74411614 | Msa0043280:CDS |
| AACATTCATTCATTCATTCA+AGG | 0.452750 | 1_1:-74413385 | Msa0043280:intron |
| GGAAAGAGGAAAATGGTAAG+TGG | 0.457394 | 1_1:-74412594 | Msa0043280:CDS |
| TTTGTCTATAAAACCAGAAA+GGG | 0.457718 | 1_1:+74413539 | None:intergenic |
| GATTGTATCTAAGTTGTTGA+AGG | 0.461165 | 1_1:-74407779 | Msa0043280:three_prime_UTR |
| TGGTAACCAGCTTCCATTGA+AGG | 0.461364 | 1_1:-74412623 | Msa0043280:CDS |
| GAAACATATACTAATGCTAT+TGG | 0.462818 | 1_1:-74407896 | Msa0043280:three_prime_UTR |
| TTACAGCTGAAAGATGGTCT+TGG | 0.463158 | 1_1:-74412541 | Msa0043280:CDS |
| AAGACCTATGTAGCCTCGCT+TGG | 0.466700 | 1_1:+74411967 | None:intergenic |
| AGCAGTTTGTTCAGAAGCAT+TGG | 0.467175 | 1_1:+74407975 | None:intergenic |
| AGATTTAACAGGGCAAGGCT+TGG | 0.467489 | 1_1:-74412160 | Msa0043280:CDS |
| GTGTTGTGTGCTATTATTAA+CGG | 0.469799 | 1_1:-74413446 | Msa0043280:five_prime_UTR |
| CAAGGAAACACGTCCGCAAT+GGG | 0.469994 | 1_1:+74408078 | None:intergenic |
| CTACAAATGATATACTCATA+TGG | 0.471654 | 1_1:+74411476 | None:intergenic |
| CTGGTGGTGTCTGAATTCAT+TGG | 0.473518 | 1_1:-74411389 | Msa0043280:CDS |
| ATTTGATCGATCTCTTTGGC+AGG | 0.477042 | 1_1:-74412302 | Msa0043280:CDS |
| AAAGGTCAAACTGTGATGCT+TGG | 0.478423 | 1_1:-74411821 | Msa0043280:CDS |
| AAACTTATGCAACCGTGAAA+AGG | 0.479354 | 1_1:-74411640 | Msa0043280:CDS |
| CATCCTCCATTTCTCAAGAA+AGG | 0.479386 | 1_1:-74412657 | Msa0043280:CDS |
| CAATCCAAGCGAGGCTACAT+AGG | 0.479480 | 1_1:-74411971 | Msa0043280:CDS |
| TTTGTGCCTTCAATGGAAGC+TGG | 0.479814 | 1_1:+74412617 | None:intergenic |
| TTGTAGTATTTGTGAATACT+TGG | 0.480347 | 1_1:-74407868 | Msa0043280:three_prime_UTR |
| TTAGAAAAGCTTGCTTAATG+AGG | 0.481570 | 1_1:+74407928 | None:intergenic |
| TCGGTAGTAGCAACAATGTT+GGG | 0.481685 | 1_1:+74407800 | None:intergenic |
| TACATAGGTCTTGAGTACTA+TGG | 0.482799 | 1_1:-74411956 | Msa0043280:CDS |
| CTCCTGTTGCAGTAGAATGT+TGG | 0.483716 | 1_1:-74412005 | Msa0043280:CDS |
| TATATCTCGGACGAAGGAAA+AGG | 0.486903 | 1_1:+74412121 | None:intergenic |
| GAATCGCGCCGCTTAATGAT+GGG | 0.487141 | 1_1:+74411360 | None:intergenic |
| CGATACAACACTCCAGAGTT+GGG | 0.487205 | 1_1:-74411570 | Msa0043280:CDS |
| GAGTGAGCAAAATGGCTTCA+AGG | 0.488129 | 1_1:-74412825 | Msa0043280:exon |
| GATAAGCCATACTGAAGAAT+GGG | 0.491591 | 1_1:-74410671 | Msa0043280:CDS |
| AAGCGATTCTCTCCCAACTC+TGG | 0.499258 | 1_1:+74411558 | None:intergenic |
| TGATGCTGTTGCTGAAGCTA+TGG | 0.500313 | 1_1:-74411318 | Msa0043280:CDS |
| TTCAACAACTTAGATACAAT+CGG | 0.501980 | 1_1:+74407781 | None:intergenic |
| ATGGTAAGTGGGAATTCACT+TGG | 0.502564 | 1_1:-74412582 | Msa0043280:CDS |
| AAGCAAAGCCAAATATTACT+TGG | 0.502945 | 1_1:-74408037 | Msa0043280:CDS |
| GGATAAGCCATACTGAAGAA+TGG | 0.503299 | 1_1:-74410672 | Msa0043280:CDS |
| CTTGTTACAGCAGTGAGAGA+TGG | 0.504181 | 1_1:-74411512 | Msa0043280:CDS |
| GACGTGTTTCCTTGCACCGT+TGG | 0.505796 | 1_1:-74408069 | Msa0043280:CDS |
| TGGCCTATATGAATACCAAC+AGG | 0.508722 | 1_1:+74411908 | None:intergenic |
| CATCTCTAACAGGAAGGGTT+CGG | 0.508766 | 1_1:+74412098 | None:intergenic |
| AAGATTACAGGTGTGTATCC+AGG | 0.509121 | 1_1:+74411596 | None:intergenic |
| TCGATACAACACTCCAGAGT+TGG | 0.509920 | 1_1:-74411571 | Msa0043280:CDS |
| AGCTCAGGTGGAAGGAAAGT+TGG | 0.512723 | 1_1:+74412415 | None:intergenic |
| GAAAGAGATTTAACAGGGCA+AGG | 0.513388 | 1_1:-74412165 | Msa0043280:CDS |
| GTTATTTGTCGTTAATTGGT+TGG | 0.513598 | 1_1:-74413601 | Msa0043280:five_prime_UTR |
| CTGATAACAATGCAACAAAA+GGG | 0.514427 | 1_1:-74408192 | Msa0043280:CDS |
| GTGGGAATTCACTTGGGATG+AGG | 0.515265 | 1_1:-74412575 | Msa0043280:CDS |
| ATGGAAACAGCTTCAGCACT+AGG | 0.515512 | 1_1:+74410981 | None:intergenic |
| TTGTTGCAGGGTGTGAGTAA+GGG | 0.516408 | 1_1:-74408234 | Msa0043280:intron |
| TTCTTCTCACGACCGAAAGA+CGG | 0.519257 | 1_1:+74412763 | None:intergenic |
| GAGTGAGTGAGTGAGCAAAA+TGG | 0.520874 | 1_1:-74412833 | Msa0043280:exon |
| TTCATACTTTCGACTATGCT+AGG | 0.522500 | 1_1:-74412036 | Msa0043280:CDS |
| CTTCTTGCAGGATCTGGAAA+GGG | 0.524177 | 1_1:-74411198 | Msa0043280:CDS |
| CTTGACATGAACCGAAATCT+CGG | 0.524650 | 1_1:+74410512 | None:intergenic |
| GATAGTACTATGGTGCAGCC+TGG | 0.524793 | 1_1:-74411020 | Msa0043280:CDS |
| TCATCTGAGGAGGAGATGCT+GGG | 0.527479 | 1_1:-74411165 | Msa0043280:CDS |
| CATTGTGGAAGTTAAACCTC+AGG | 0.529575 | 1_1:-74410419 | Msa0043280:intron |
| AGCATTAAGATTCTTCCTGT+TGG | 0.529787 | 1_1:-74411923 | Msa0043280:CDS |
| TGAAGTAAGATCTAACAAGT+TGG | 0.532544 | 1_1:+74412795 | None:intergenic |
| GAGCCTGTTTCAGTTAAAAG+TGG | 0.534096 | 1_1:-74410448 | Msa0043280:CDS |
| GCAAACCCTGCTAGAGGCCG+CGG | 0.535783 | 1_1:-74411689 | Msa0043280:CDS |
| GCAAGGAAACACGTCCGCAA+TGG | 0.535831 | 1_1:+74408077 | None:intergenic |
| ATCGGTAGTAGCAACAATGT+TGG | 0.537458 | 1_1:+74407799 | None:intergenic |
| CCTTTCCGCGGCCTCTAGCA+GGG | 0.538093 | 1_1:+74411684 | None:intergenic |
| CCGCTGTCGCCTGATCTTGG+TGG | 0.540431 | 1_1:-74412328 | Msa0043280:CDS |
| AGTATTTGTGAATACTTGGT+TGG | 0.540615 | 1_1:-74407864 | Msa0043280:three_prime_UTR |
| GGTGTTGCACTAATTGATCC+AGG | 0.542444 | 1_1:+74411002 | None:intergenic |
| TTTACAACATGCTGAAATGA+GGG | 0.544384 | 1_1:-74411735 | Msa0043280:CDS |
| GATTCATGACTGACTCAAGC+TGG | 0.544391 | 1_1:+74411888 | None:intergenic |
| GATGACATGGATATCTTCAA+AGG | 0.545640 | 1_1:-74411794 | Msa0043280:CDS |
| ATTAGTATATGTTTCCTACA+TGG | 0.546032 | 1_1:+74407904 | None:intergenic |
| GGATTCCGCCTTAATGGTCC+CGG | 0.546381 | 1_1:-74411297 | Msa0043280:CDS |
| CTTTCTTGAGAAATGGAGGA+TGG | 0.547660 | 1_1:+74412658 | None:intergenic |
| GAAAGAGGAAAATGGTAAGT+GGG | 0.548871 | 1_1:-74412593 | Msa0043280:CDS |
| TAGAATTTAGTGAAAAGCTC+AGG | 0.548984 | 1_1:+74412400 | None:intergenic |
| AGAGAAACACTCTCACTGAA+TGG | 0.549371 | 1_1:-74410902 | Msa0043280:CDS |
| TTTCGGTTCATGTCAAGCTA+AGG | 0.551647 | 1_1:-74410506 | Msa0043280:CDS |
| CTTGGACTTGCTGCAGAACA+CGG | 0.553602 | 1_1:-74410861 | Msa0043280:CDS |
| CATCCTTTCTTGAGAAATGG+AGG | 0.564155 | 1_1:+74412654 | None:intergenic |
| GTTTAACTTCCACAATGTAT+GGG | 0.566536 | 1_1:+74410425 | None:intergenic |
| ACTGCACAAGCTGTTCAAGA+TGG | 0.567111 | 1_1:+74410962 | None:intergenic |
| TAGTGAAAAGCTCAGGTGGA+AGG | 0.568307 | 1_1:+74412407 | None:intergenic |
| CATAATCCAAAAGAATCGCT+CGG | 0.569386 | 1_1:+74411042 | None:intergenic |
| CCCTGCTAGAGGCCGCGGAA+AGG | 0.571655 | 1_1:-74411684 | Msa0043280:CDS |
| GCTTCTTGCAGGATCTGGAA+AGG | 0.572169 | 1_1:-74411199 | Msa0043280:CDS |
| ATTGAAGGCACAAAGGAAAG+AGG | 0.575033 | 1_1:-74412608 | Msa0043280:CDS |
| GAAGTTCATCTCTAACAGGA+AGG | 0.577715 | 1_1:+74412092 | None:intergenic |
| TTGTTAGATCTTACTTCATG+CGG | 0.579234 | 1_1:-74412790 | Msa0043280:CDS |
| AATATTTGCTGATAAAGTGA+TGG | 0.579350 | 1_1:-74412260 | Msa0043280:CDS |
| GGCTGCTCCCCATCATTAAG+CGG | 0.581670 | 1_1:-74411368 | Msa0043280:CDS |
| TGCTTAATGAGGAGATAACT+GGG | 0.586765 | 1_1:+74407939 | None:intergenic |
| TTGTTACAGCAGTGAGAGAT+GGG | 0.586812 | 1_1:-74411511 | Msa0043280:CDS |
| GCGCGATTCGGGTGAATCCG+TGG | 0.589497 | 1_1:-74411346 | Msa0043280:CDS |
| GATGCTTGGGGTGGATGACA+TGG | 0.591172 | 1_1:-74411807 | Msa0043280:CDS |
| AGAGTCCAAAGAGAGTGCTC+TGG | 0.593330 | 1_1:-74410557 | Msa0043280:CDS |
| GAAGAAAAGGCTTCCAAGAG+TGG | 0.594619 | 1_1:-74412746 | Msa0043280:CDS |
| AGGAAGGGTTCGGTATATCT+CGG | 0.595173 | 1_1:+74412108 | None:intergenic |
| TCTTTCTGAGACAGAAAGCA+AGG | 0.595405 | 1_1:-74411867 | Msa0043280:CDS |
| TAAAAGTGGCCCATACATTG+TGG | 0.597276 | 1_1:-74410434 | Msa0043280:CDS |
| AAGTTCATCTCTAACAGGAA+GGG | 0.599310 | 1_1:+74412093 | None:intergenic |
| TTGGGGTAATAACAAGTGCA+AGG | 0.603403 | 1_1:-74408113 | Msa0043280:CDS |
| TATCCAAAAGAAGAGCATGC+TGG | 0.604070 | 1_1:-74411408 | Msa0043280:CDS |
| GAGTTAAGAAACCAGTTCAA+AGG | 0.606608 | 1_1:-74411839 | Msa0043280:CDS |
| CCACCAAGATCAGGCGACAG+CGG | 0.612409 | 1_1:+74412328 | None:intergenic |
| GATGAAACCAACAACAGTGT+TGG | 0.613941 | 1_1:-74412691 | Msa0043280:CDS |
| GCAACAGCATCAATATTCCA+CGG | 0.614265 | 1_1:+74411329 | None:intergenic |
| TGGTAAGTGGGAATTCACTT+GGG | 0.618013 | 1_1:-74412581 | Msa0043280:CDS |
| GTTCGGTATATCTCGGACGA+AGG | 0.622286 | 1_1:+74412115 | None:intergenic |
| ACATGCTGAAATGAGGGGAA+AGG | 0.622463 | 1_1:-74411729 | Msa0043280:CDS |
| AATTTAGTGAAAAGCTCAGG+TGG | 0.623435 | 1_1:+74412403 | None:intergenic |
| GGAAGTTATCAACCCTGATG+AGG | 0.625660 | 1_1:-74412239 | Msa0043280:CDS |
| AAACTTTAGAAAGCTATCTG+TGG | 0.628781 | 1_1:-74411099 | Msa0043280:CDS |
| AGCTTCCATTGAAGGCACAA+AGG | 0.630490 | 1_1:-74412615 | Msa0043280:CDS |
| AATCGCGCCGCTTAATGATG+GGG | 0.632508 | 1_1:+74411361 | None:intergenic |
| TGGGGTAATAACAAGTGCAA+GGG | 0.633008 | 1_1:-74408112 | Msa0043280:CDS |
| TTACAACATGCTGAAATGAG+GGG | 0.634606 | 1_1:-74411734 | Msa0043280:CDS |
| GGAAGCATGTAGTGAAACAA+AGG | 0.636066 | 1_1:+74412349 | None:intergenic |
| CTTCTTGCACATCCTTTCCG+CGG | 0.637125 | 1_1:+74411672 | None:intergenic |
| CCCAAACAAAATCCTCATCA+GGG | 0.640182 | 1_1:+74412227 | None:intergenic |
| TGGTGATGACAGATCAGATG+AGG | 0.641223 | 1_1:-74408142 | Msa0043280:CDS |
| GAGTATATCATTTGTAGACA+AGG | 0.642548 | 1_1:-74411470 | Msa0043280:CDS |
| GGCATCTCTATCGCCCATTG+CGG | 0.645098 | 1_1:-74408091 | Msa0043280:CDS |
| CATCTGAGGAGGAGATGCTG+GGG | 0.645178 | 1_1:-74411164 | Msa0043280:CDS |
| TTTGAGAAAGAGATTTAACA+GGG | 0.647753 | 1_1:-74412170 | Msa0043280:CDS |
| CAAATCGCAAACCCTGCTAG+AGG | 0.649493 | 1_1:-74411695 | Msa0043280:CDS |
| AATCGCTTACTATGCAATTG+CGG | 0.650771 | 1_1:-74411543 | Msa0043280:CDS |
| ACATTCTACTGCAACAGGAG+AGG | 0.651128 | 1_1:+74412008 | None:intergenic |
| CTTGTAGAGATCATCTGAGG+AGG | 0.654064 | 1_1:-74411175 | Msa0043280:CDS |
| GGATAAACGACACATTTGGA+AGG | 0.660498 | 1_1:-74411619 | Msa0043280:CDS |
| TTATATACAGAAACTACTGA+TGG | 0.662521 | 1_1:-74410589 | Msa0043280:CDS |
| CCAAAAGAAGAGCATGCTGG+TGG | 0.662803 | 1_1:-74411405 | Msa0043280:CDS |
| AGACTCCGGGACCATTAAGG+CGG | 0.664593 | 1_1:+74411292 | None:intergenic |
| ATCAGATGAGGACATGTTTG+GGG | 0.667558 | 1_1:-74408130 | Msa0043280:CDS |
| TCAAACTGTGATGCTTGGGG+TGG | 0.668780 | 1_1:-74411816 | Msa0043280:CDS |
| ACGAAGGAAAAGGACTATGG+AGG | 0.674332 | 1_1:+74412131 | None:intergenic |
| GGGCTTGTAGAGATCATCTG+AGG | 0.683476 | 1_1:-74411178 | Msa0043280:CDS |
| ATGTTGGAAGAACCATCAAG+TGG | 0.693809 | 1_1:+74412194 | None:intergenic |
| AGGTCAAACTGTGATGCTTG+GGG | 0.701625 | 1_1:-74411819 | Msa0043280:CDS |
| ATTGCTTATCAATCCAAGCG+AGG | 0.704535 | 1_1:-74411980 | Msa0043280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAATTAATAAGATCTA+TGG | - | chr1_1:74412238-74412257 | Msa0043280:CDS | 10.0% |
| !! | TCTAAATATAATTTCTCATA+TGG | - | chr1_1:74408242-74408261 | Msa0043280:intron | 15.0% |
| !!! | AAATAAATTGTTTTCTTTGA+TGG | - | chr1_1:74410587-74410606 | Msa0043280:CDS | 15.0% |
| !! | GAAAACTTGAAATTATTTAA+AGG | + | chr1_1:74412388-74412407 | None:intergenic | 15.0% |
| !!! | ATAATTTCAAGTTTTCATTT+TGG | - | chr1_1:74411116-74411135 | Msa0043280:CDS | 15.0% |
| !! | AAAATTTCAGATATGTAAAA+AGG | - | chr1_1:74411763-74411782 | Msa0043280:CDS | 15.0% |
| !!! | TTTTGTTTGTTTTTTTACTT+TGG | - | chr1_1:74411872-74411891 | Msa0043280:CDS | 15.0% |
| !!! | TTTTTATGTTTTTGTTTTCT+GGG | - | chr1_1:74412045-74412064 | Msa0043280:CDS | 15.0% |
| !!! | CTTTAAAAGAAAAAATCTAA+CGG | - | chr1_1:74412207-74412226 | Msa0043280:CDS | 15.0% |
| !! | ACTTTAACTATAAATGTTTA+TGG | + | chr1_1:74412288-74412307 | None:intergenic | 15.0% |
| !!! | ATAATTTCAAGTTTTCATTT+TGG | + | chr1_1:74411116-74411135 | None:intergenic | 15.0% |
| !! | TGAAAACTTGAAATTATTTA+AGG | - | chr1_1:74412387-74412406 | Msa0043280:CDS | 15.0% |
| !! | GAAAACTTGAAATTATTTAA+GGG | - | chr1_1:74412388-74412407 | Msa0043280:CDS | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | + | chr1_1:74412460-74412479 | None:intergenic | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | - | chr1_1:74412459-74412478 | Msa0043280:CDS | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | - | chr1_1:74412483-74412502 | Msa0043280:CDS | 15.0% |
| !! | AGAAAAAGTTATTATTGTAT+TGG | - | chr1_1:74412546-74412565 | Msa0043280:CDS | 15.0% |
| !!! | CATTTTGAAACAATTTTTTT+TGG | - | chr1_1:74412586-74412605 | Msa0043280:CDS | 15.0% |
| !! | GATCTTTAGTTAAAATAAAA+AGG | - | chr1_1:74412662-74412681 | Msa0043280:CDS | 15.0% |
| !! | GATAATGATTAATAATACTA+TGG | - | chr1_1:74412963-74412982 | Msa0043280:intron | 15.0% |
| !!! | ATTATCATTCTCTTTTTAAT+AGG | - | chr1_1:74413620-74413639 | Msa0043280:five_prime_UTR | 15.0% |
| !! | CTTTATACAAACAAAGAAAA+AGG | + | chr1_1:74407704-74407723 | None:intergenic | 20.0% |
| !!! | ATTTATTTATTTCTGGTAGT+TGG | - | chr1_1:74408113-74408132 | Msa0043280:CDS | 20.0% |
| !!! | AAATTTATCCTTTTTTTTCC+AGG | - | chr1_1:74410636-74410655 | Msa0043280:CDS | 20.0% |
| !!! | GTTGTTTTTGAATTTTTTCT+GGG | + | chr1_1:74411348-74411367 | None:intergenic | 20.0% |
| !!! | TTTGTTTTTTTACTTTGGTA+TGG | - | chr1_1:74411877-74411896 | Msa0043280:CDS | 20.0% |
| !!! | TTTTAATTTGTTTTTTCTCC+TGG | - | chr1_1:74411973-74411992 | Msa0043280:CDS | 20.0% |
| !!! | GTTTTTATGTTTTTGTTTTC+TGG | - | chr1_1:74412044-74412063 | Msa0043280:CDS | 20.0% |
| !!! | TAGATTTTTTCTTTTAAAGG+AGG | + | chr1_1:74412206-74412225 | None:intergenic | 20.0% |
| !!! | CGTTAGATTTTTTCTTTTAA+AGG | + | chr1_1:74412209-74412228 | None:intergenic | 20.0% |
| !! | TTAACTATAAATGTTTATGG+TGG | + | chr1_1:74412285-74412304 | None:intergenic | 20.0% |
| !! | TTATAGTTAAAGTTAACAGT+CGG | - | chr1_1:74412295-74412314 | Msa0043280:CDS | 20.0% |
| !!! | AATTAATAAAACGTACGTTT+TGG | + | chr1_1:74411145-74411164 | None:intergenic | 20.0% |
| !!! | AACGTACGTTTTATTAATTA+TGG | - | chr1_1:74412356-74412375 | Msa0043280:CDS | 20.0% |
| !!! | ACGTACGTTTTATTAATTAT+GGG | - | chr1_1:74412357-74412376 | Msa0043280:CDS | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | + | chr1_1:74412469-74412488 | None:intergenic | 20.0% |
| !! | ATTAAGAAACAGACATTTAT+CGG | + | chr1_1:74412728-74412747 | None:intergenic | 20.0% |
| !! | AAATTATAATTGTCTGTGAA+CGG | - | chr1_1:74412806-74412825 | Msa0043280:CDS | 20.0% |
| !! | TTGAAGTTAATTCTAATCTT+TGG | - | chr1_1:74412990-74413009 | Msa0043280:intron | 20.0% |
| !! | ACATGTTATTTGTCGTTAAT+TGG | - | chr1_1:74407724-74407743 | Msa0043280:three_prime_UTR | 25.0% |
| ! | TTTGTCTATAAAACCAGAAA+GGG | + | chr1_1:74407793-74407812 | None:intergenic | 25.0% |
| !! | TTTTGTCTATAAAACCAGAA+AGG | + | chr1_1:74407794-74407813 | None:intergenic | 25.0% |
| ! | AACATTCATTCATTCATTCA+AGG | - | chr1_1:74407944-74407963 | Msa0043280:CDS | 25.0% |
| ! | TGAATAATGTAAACAGAAAG+AGG | + | chr1_1:74408026-74408045 | None:intergenic | 25.0% |
| ! | TAGTAATTAACACTGAATTG+GGG | + | chr1_1:74408077-74408096 | None:intergenic | 25.0% |
| ! | CTAGTAATTAACACTGAATT+GGG | + | chr1_1:74408078-74408097 | None:intergenic | 25.0% |
| ! | AAAATCAAATTAGACCCAAA+GGG | + | chr1_1:74408296-74408315 | None:intergenic | 25.0% |
| ! | CCATAAAAAAAGAAATTGCA+TGG | + | chr1_1:74408319-74408338 | None:intergenic | 25.0% |
| !!! | CCATGCAATTTCTTTTTTTA+TGG | - | chr1_1:74408316-74408335 | Msa0043280:intron | 25.0% |
| ! | GATGTTGAAACAATCTATAT+TGG | - | chr1_1:74408815-74408834 | Msa0043280:intron | 25.0% |
| !! | CTTTTCACTAAATTCTATCA+TGG | - | chr1_1:74408935-74408954 | Msa0043280:intron | 25.0% |
| !! | AATATTTGCTGATAAAGTGA+TGG | - | chr1_1:74409069-74409088 | Msa0043280:intron | 25.0% |
| ! | AATCTCTTTCTCAAAAATGT+TGG | + | chr1_1:74409154-74409173 | None:intergenic | 25.0% |
| !!! | TTTTGAGAAAGAGATTTAAC+AGG | - | chr1_1:74409158-74409177 | Msa0043280:intron | 25.0% |
| ! | TTTGAGAAAGAGATTTAACA+GGG | - | chr1_1:74409159-74409178 | Msa0043280:intron | 25.0% |
| ! | CTACAAATGATATACTCATA+TGG | + | chr1_1:74409856-74409875 | None:intergenic | 25.0% |
| ! | TTTGGATTATGATAGTACTA+TGG | - | chr1_1:74410299-74410318 | Msa0043280:intron | 25.0% |
| ! | TTTAAAAGAGTGAGTTCATT+TGG | + | chr1_1:74410540-74410559 | None:intergenic | 25.0% |
| ! | TTATATACAGAAACTACTGA+TGG | - | chr1_1:74410740-74410759 | Msa0043280:intron | 25.0% |
| !!! | ACTTTTTTATTACTAACCTG+AGG | + | chr1_1:74410929-74410948 | None:intergenic | 25.0% |
| ! | GAAATGCAATGATTAAAAGA+AGG | - | chr1_1:74411068-74411087 | Msa0043280:CDS | 25.0% |
| !!! | ACGTACGTTTTATTAATTGT+GGG | + | chr1_1:74411143-74411162 | None:intergenic | 25.0% |
| !!! | AACGTACGTTTTATTAATTG+TGG | + | chr1_1:74411144-74411163 | None:intergenic | 25.0% |
| !!! | GGTTGTTTTTGAATTTTTTC+TGG | + | chr1_1:74411349-74411368 | None:intergenic | 25.0% |
| !!! | TTTTTTTTAAGCTGGTATAG+TGG | + | chr1_1:74411440-74411459 | None:intergenic | 25.0% |
| !! | AAAATCCAGCAAATCATTTT+CGG | - | chr1_1:74411456-74411475 | Msa0043280:CDS | 25.0% |
| !!! | GGATTGATTTGAGTTTATTT+CGG | + | chr1_1:74411595-74411614 | None:intergenic | 25.0% |
| !! | ACAATGATTTGAGTTTGTTT+GGG | + | chr1_1:74411616-74411635 | None:intergenic | 25.0% |
| !! | AACAATGATTTGAGTTTGTT+TGG | + | chr1_1:74411617-74411636 | None:intergenic | 25.0% |
| ! | TATAGTTAAAGTTAACAGTC+GGG | - | chr1_1:74412296-74412315 | Msa0043280:CDS | 25.0% |
| ! | TAACCATTATCTTTCTTTCA+AGG | + | chr1_1:74412432-74412451 | None:intergenic | 25.0% |
| ! | AGTTCATGATCTTAGAAATA+AGG | + | chr1_1:74413039-74413058 | None:intergenic | 25.0% |
| ! | ATTAGTATATGTTTCCTACA+TGG | + | chr1_1:74413428-74413447 | None:intergenic | 25.0% |
| ! | GAAACATATACTAATGCTAT+TGG | - | chr1_1:74413433-74413452 | Msa0043280:five_prime_UTR | 25.0% |
| ! | TTGTAGTATTTGTGAATACT+TGG | - | chr1_1:74413461-74413480 | Msa0043280:five_prime_UTR | 25.0% |
| ! | TTCAACAACTTAGATACAAT+CGG | + | chr1_1:74413551-74413570 | None:intergenic | 25.0% |
| GTTATTTGTCGTTAATTGGT+TGG | - | chr1_1:74407728-74407747 | Msa0043280:three_prime_UTR | 30.0% | |
| ! | GTGTTGTGTGCTATTATTAA+CGG | - | chr1_1:74407883-74407902 | Msa0043280:three_prime_UTR | 30.0% |
| CCTAGTAATTAACACTGAAT+TGG | + | chr1_1:74408079-74408098 | None:intergenic | 30.0% | |
| CCAATTCAGTGTTAATTACT+AGG | - | chr1_1:74408076-74408095 | Msa0043280:CDS | 30.0% | |
| AGAAAAATACAGCATTCAAC+TGG | + | chr1_1:74408225-74408244 | None:intergenic | 30.0% | |
| ! | ATTTTGTCAATTCAACCCTT+TGG | - | chr1_1:74408278-74408297 | Msa0043280:intron | 30.0% |
| ! | TTTTGTCAATTCAACCCTTT+GGG | - | chr1_1:74408279-74408298 | Msa0043280:intron | 30.0% |
| GAAAATCAAATTAGACCCAA+AGG | + | chr1_1:74408297-74408316 | None:intergenic | 30.0% | |
| !!! | ATGCTAGTTTGCTAGTTTTT+TGG | - | chr1_1:74408394-74408413 | Msa0043280:intron | 30.0% |
| !!! | AGTTGTATTTTTGCTGTTGT+AGG | - | chr1_1:74408460-74408479 | Msa0043280:intron | 30.0% |
| TGAAGTAAGATCTAACAAGT+TGG | + | chr1_1:74408537-74408556 | None:intergenic | 30.0% | |
| TTGTTAGATCTTACTTCATG+CGG | - | chr1_1:74408539-74408558 | Msa0043280:intron | 30.0% | |
| TAGAATTTAGTGAAAAGCTC+AGG | + | chr1_1:74408932-74408951 | None:intergenic | 30.0% | |
| TTCTGAATTCTGACCTTATA+GGG | - | chr1_1:74409269-74409288 | Msa0043280:intron | 30.0% | |
| ! | AGGAATCAGCTTAAAACTTT+TGG | - | chr1_1:74409555-74409574 | Msa0043280:intron | 30.0% |
| ! | TTTTACAACATGCTGAAATG+AGG | - | chr1_1:74409593-74409612 | Msa0043280:intron | 30.0% |
| TTTACAACATGCTGAAATGA+GGG | - | chr1_1:74409594-74409613 | Msa0043280:intron | 30.0% | |
| AAAAGGATAAACGACACATT+TGG | - | chr1_1:74409706-74409725 | Msa0043280:intron | 30.0% | |
| GAGTATATCATTTGTAGACA+AGG | - | chr1_1:74409859-74409878 | Msa0043280:intron | 30.0% | |
| ! | GAGAAGATAGATGAGATTTT+AGG | - | chr1_1:74409886-74409905 | Msa0043280:intron | 30.0% |
| !! | CAGATAGCTTTCTAAAGTTT+GGG | + | chr1_1:74410230-74410249 | None:intergenic | 30.0% |
| !! | ACAGATAGCTTTCTAAAGTT+TGG | + | chr1_1:74410231-74410250 | None:intergenic | 30.0% |
| ! | AAACTTTAGAAAGCTATCTG+TGG | - | chr1_1:74410230-74410249 | Msa0043280:intron | 30.0% |
| ACATTGTTTCAGCTTATAAG+AGG | - | chr1_1:74410256-74410275 | Msa0043280:intron | 30.0% | |
| CACAATGAAAACACAATTCT+TGG | + | chr1_1:74410397-74410416 | None:intergenic | 30.0% | |
| ! | AATTGTGTTTTCATTGTGAG+TGG | - | chr1_1:74410399-74410418 | Msa0043280:intron | 30.0% |
| ! | TTTTCTTCTTGTGAAAAGCT+TGG | - | chr1_1:74410450-74410469 | Msa0043280:CDS | 30.0% |
| TTATGCATGAAAGAATGTTG+TGG | - | chr1_1:74410561-74410580 | Msa0043280:CDS | 30.0% | |
| TCTGTATATAACTGCATAAC+TGG | + | chr1_1:74410731-74410750 | None:intergenic | 30.0% | |
| ! | GTTTAACTTCCACAATGTAT+GGG | + | chr1_1:74410907-74410926 | None:intergenic | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | + | chr1_1:74411026-74411045 | None:intergenic | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | - | chr1_1:74411027-74411046 | Msa0043280:CDS | 30.0% |
| AAGAAGGCTTATTAGATTCA+TGG | - | chr1_1:74411084-74411103 | Msa0043280:CDS | 30.0% | |
| AGAAGGCTTATTAGATTCAT+GGG | - | chr1_1:74411085-74411104 | Msa0043280:CDS | 30.0% | |
| AAAAATTACAGTAGCCACTT+AGG | + | chr1_1:74411256-74411275 | None:intergenic | 30.0% | |
| ! | TGTACGATCATCATCATTTT+TGG | - | chr1_1:74411394-74411413 | Msa0043280:CDS | 30.0% |
| !!! | TTGCTGGATTTTTTTTAAGC+TGG | + | chr1_1:74411448-74411467 | None:intergenic | 30.0% |
| ATGAATCATTACACCATCAA+TGG | - | chr1_1:74411511-74411530 | Msa0043280:CDS | 30.0% | |
| GGATTGAAACTAATCCAATT+AGG | - | chr1_1:74411538-74411557 | Msa0043280:CDS | 30.0% | |
| ATCCAATTAGGAAGATGATA+CGG | - | chr1_1:74411550-74411569 | Msa0043280:CDS | 30.0% | |
| ATAGGAAAGAAGATGAAGAA+AGG | - | chr1_1:74412118-74412137 | Msa0043280:CDS | 30.0% | |
| TAGGAAAGAAGATGAAGAAA+GGG | - | chr1_1:74412119-74412138 | Msa0043280:CDS | 30.0% | |
| GAAATTATTTAAGGGACCAA+TGG | - | chr1_1:74412396-74412415 | Msa0043280:CDS | 30.0% | |
| AAGCCTTGAAAGAAAGATAA+TGG | - | chr1_1:74412426-74412445 | Msa0043280:CDS | 30.0% | |
| ATAGTGTGCTGAGTATTAAT+TGG | - | chr1_1:74412508-74412527 | Msa0043280:CDS | 30.0% | |
| TCGTAGATCAAAGAAAATAG+CGG | + | chr1_1:74412913-74412932 | None:intergenic | 30.0% | |
| ! | TTGGTCATGAATTCTTTTGA+AGG | - | chr1_1:74413009-74413028 | Msa0043280:intron | 30.0% |
| ! | TGGTCATGAATTCTTTTGAA+GGG | - | chr1_1:74413010-74413029 | Msa0043280:intron | 30.0% |
| TCATGATCTTAGAAATAAGG+AGG | + | chr1_1:74413036-74413055 | None:intergenic | 30.0% | |
| TCTGATAACAATGCAACAAA+AGG | - | chr1_1:74413136-74413155 | Msa0043280:intron | 30.0% | |
| CTGATAACAATGCAACAAAA+GGG | - | chr1_1:74413137-74413156 | Msa0043280:intron | 30.0% | |
| !! | AAGTAATATTTGGCTTTGCT+TGG | + | chr1_1:74413293-74413312 | None:intergenic | 30.0% |
| AAGCAAAGCCAAATATTACT+TGG | - | chr1_1:74413292-74413311 | Msa0043280:intron | 30.0% | |
| TGTGTCTTCCAAGTAATATT+TGG | + | chr1_1:74413303-74413322 | None:intergenic | 30.0% | |
| ! | TTAGAAAAGCTTGCTTAATG+AGG | + | chr1_1:74413404-74413423 | None:intergenic | 30.0% |
| AGTATTTGTGAATACTTGGT+TGG | - | chr1_1:74413465-74413484 | Msa0043280:five_prime_UTR | 30.0% | |
| GTTGGGATTAGAGATAAAAA+TGG | + | chr1_1:74413515-74413534 | None:intergenic | 30.0% | |
| GATTGTATCTAAGTTGTTGA+AGG | - | chr1_1:74413550-74413569 | Msa0043280:five_prime_UTR | 30.0% | |
| TAACGGAGAAGAAGAATCTT+TGG | - | chr1_1:74407900-74407919 | Msa0043280:three_prime_UTR | 35.0% | |
| !! | ATTCAAGGTTAGCTTAGCTT+AGG | - | chr1_1:74407959-74407978 | Msa0043280:CDS | 35.0% |
| GATCATCCTTTCTTGAGAAA+TGG | + | chr1_1:74408681-74408700 | None:intergenic | 35.0% | |
| CAAGAAAGGATGATCATTGT+TGG | - | chr1_1:74408686-74408705 | Msa0043280:intron | 35.0% | |
| GAAAGAGGAAAATGGTAAGT+GGG | - | chr1_1:74408736-74408755 | Msa0043280:intron | 35.0% | |
| ! | CTTCTTTTACAGCTGAAAGA+TGG | - | chr1_1:74408782-74408801 | Msa0043280:intron | 35.0% |
| AATTTAGTGAAAAGCTCAGG+TGG | + | chr1_1:74408929-74408948 | None:intergenic | 35.0% | |
| GTTTCTGTAAGCAACATCTA+TGG | - | chr1_1:74408957-74408976 | Msa0043280:intron | 35.0% | |
| AAGTTCATCTCTAACAGGAA+GGG | + | chr1_1:74409239-74409258 | None:intergenic | 35.0% | |
| CTAAGAAGTTCATCTCTAAC+AGG | + | chr1_1:74409244-74409263 | None:intergenic | 35.0% | |
| CTTCTGAATTCTGACCTTAT+AGG | - | chr1_1:74409268-74409287 | Msa0043280:intron | 35.0% | |
| ! | CGAAAGTATGAAACCCTATA+AGG | + | chr1_1:74409285-74409304 | None:intergenic | 35.0% |
| TTCATACTTTCGACTATGCT+AGG | - | chr1_1:74409293-74409312 | Msa0043280:intron | 35.0% | |
| TACATAGGTCTTGAGTACTA+TGG | - | chr1_1:74409373-74409392 | Msa0043280:intron | 35.0% | |
| AGCATTAAGATTCTTCCTGT+TGG | - | chr1_1:74409406-74409425 | Msa0043280:intron | 35.0% | |
| CTTCCTGTTGGTATTCATAT+AGG | - | chr1_1:74409418-74409437 | Msa0043280:intron | 35.0% | |
| GAGTTAAGAAACCAGTTCAA+AGG | - | chr1_1:74409490-74409509 | Msa0043280:intron | 35.0% | |
| GATGACATGGATATCTTCAA+AGG | - | chr1_1:74409535-74409554 | Msa0043280:intron | 35.0% | |
| ! | CAGCTTAAAACTTTTGGCAA+TGG | - | chr1_1:74409561-74409580 | Msa0043280:intron | 35.0% |
| TTACAACATGCTGAAATGAG+GGG | - | chr1_1:74409595-74409614 | Msa0043280:intron | 35.0% | |
| AAACTTATGCAACCGTGAAA+AGG | - | chr1_1:74409689-74409708 | Msa0043280:intron | 35.0% | |
| !!! | TGTGTCGTTTATCCTTTTCA+CGG | + | chr1_1:74409704-74409723 | None:intergenic | 35.0% |
| ! | GTTGTATCGATCAAGATTAC+AGG | + | chr1_1:74409748-74409767 | None:intergenic | 35.0% |
| AATCGCTTACTATGCAATTG+CGG | - | chr1_1:74409786-74409805 | Msa0043280:intron | 35.0% | |
| ! | AGGATTTCGAGTAATAGCTT+TGG | - | chr1_1:74410203-74410222 | Msa0043280:intron | 35.0% |
| CATAATCCAAAAGAATCGCT+CGG | + | chr1_1:74410290-74410309 | None:intergenic | 35.0% | |
| ! | TGTTTTCATTGTGAGTGGAA+AGG | - | chr1_1:74410404-74410423 | Msa0043280:intron | 35.0% |
| GAGTGAGTTCATTTGGTATA+AGG | + | chr1_1:74410533-74410552 | None:intergenic | 35.0% | |
| TTCTTTGATGGAGATTGCTT+AGG | - | chr1_1:74410599-74410618 | Msa0043280:CDS | 35.0% | |
| TGGCTTATCCTGGAAAAAAA+AGG | + | chr1_1:74410647-74410666 | None:intergenic | 35.0% | |
| GATAAGCCATACTGAAGAAT+GGG | - | chr1_1:74410658-74410677 | Msa0043280:CDS | 35.0% | |
| ATCTGTTTCCAGTCAAAATC+AGG | + | chr1_1:74410701-74410720 | None:intergenic | 35.0% | |
| TAAGGAACTTCTTGATCATC+TGG | - | chr1_1:74410841-74410860 | Msa0043280:intron | 35.0% | |
| ! | GGTTTAACTTCCACAATGTA+TGG | + | chr1_1:74410908-74410927 | None:intergenic | 35.0% |
| GATGGGATTTATTTGGCAAA+CGG | + | chr1_1:74411187-74411206 | None:intergenic | 35.0% | |
| ! | TTTGACGGATGGGATTTATT+TGG | + | chr1_1:74411194-74411213 | None:intergenic | 35.0% |
| !!! | AGACTATTGTTTTGACGGAT+GGG | + | chr1_1:74411204-74411223 | None:intergenic | 35.0% |
| !!! | AAGACTATTGTTTTGACGGA+TGG | + | chr1_1:74411205-74411224 | None:intergenic | 35.0% |
| !!! | CGGAAAGACTATTGTTTTGA+CGG | + | chr1_1:74411209-74411228 | None:intergenic | 35.0% |
| !!! | TGTTTTAGAAGTGGTGTTGA+TGG | + | chr1_1:74411370-74411389 | None:intergenic | 35.0% |
| ! | AAATGATGATGATCGTACAG+TGG | + | chr1_1:74411393-74411412 | None:intergenic | 35.0% |
| TAGTGGCGATGATTTCTTTA+CGG | + | chr1_1:74411423-74411442 | None:intergenic | 35.0% | |
| ! | TTCATCCGAAAATGATTTGC+TGG | + | chr1_1:74411464-74411483 | None:intergenic | 35.0% |
| TTTCAATCCTTCTCCATTGA+TGG | + | chr1_1:74411527-74411546 | None:intergenic | 35.0% | |
| TCCAATTAGGAAGATGATAC+GGG | - | chr1_1:74411551-74411570 | Msa0043280:CDS | 35.0% | |
| ! | TGCATCTTTCTGGATTTTGA+CGG | - | chr1_1:74411651-74411670 | Msa0043280:CDS | 35.0% |
| ! | TGGTATGGATGACGATTTTA+TGG | - | chr1_1:74411892-74411911 | Msa0043280:CDS | 35.0% |
| ! | GACGATTTTATGGATTTGAG+TGG | - | chr1_1:74411902-74411921 | Msa0043280:CDS | 35.0% |
| !!! | TATTTTGATGTACACTTGCC+AGG | + | chr1_1:74411994-74412013 | None:intergenic | 35.0% |
| ! | TATGTTGATGAAGATGGTGA+TGG | - | chr1_1:74412068-74412087 | Msa0043280:CDS | 35.0% |
| ! | ATGTGATGATGAAGAAGCAT+AGG | - | chr1_1:74412100-74412119 | Msa0043280:CDS | 35.0% |
| AGGAAAGAAGATGAAGAAAG+GGG | - | chr1_1:74412120-74412139 | Msa0043280:CDS | 35.0% | |
| GTTAACAGTCGGGATTTATT+TGG | - | chr1_1:74412306-74412325 | Msa0043280:CDS | 35.0% | |
| TCAAGGCTTAATAGATCCAT+TGG | + | chr1_1:74412415-74412434 | None:intergenic | 35.0% | |
| TGTGCTGAGTATTAATTGGA+GGG | - | chr1_1:74412512-74412531 | Msa0043280:CDS | 35.0% | |
| !! | AAGCGACACTCATTTTGAAA+CGG | - | chr1_1:74412612-74412631 | Msa0043280:CDS | 35.0% |
| ! | CACTTGACATTTTTGTTGCA+GGG | - | chr1_1:74413083-74413102 | Msa0043280:intron | 35.0% |
| CCAATGCATAGAACAAAATC+TGG | + | chr1_1:74413170-74413189 | None:intergenic | 35.0% | |
| ! | CCAGATTTTGTTCTATGCAT+TGG | - | chr1_1:74413167-74413186 | Msa0043280:intron | 35.0% |
| !! | TTTGCTTGGTTTTTGACCAA+CGG | + | chr1_1:74413279-74413298 | None:intergenic | 35.0% |
| ! | AAGACACAAGTGAGATTTTG+AGG | - | chr1_1:74413315-74413334 | Msa0043280:intron | 35.0% |
| TGCTTAATGAGGAGATAACT+GGG | + | chr1_1:74413393-74413412 | None:intergenic | 35.0% | |
| TTGCTTAATGAGGAGATAAC+TGG | + | chr1_1:74413394-74413413 | None:intergenic | 35.0% | |
| ! | CAAGCTTTTCTAATCCATGT+AGG | - | chr1_1:74413411-74413430 | Msa0043280:five_prime_UTR | 35.0% |
| ! | CTTGGTTGGTTATCTTGTAT+TGG | - | chr1_1:74413479-74413498 | Msa0043280:five_prime_UTR | 35.0% |
| GAATGCAAGAATACCCTTTC+TGG | - | chr1_1:74407777-74407796 | Msa0043280:three_prime_UTR | 40.0% | |
| CTGAATTGGGGCAATGTTTA+AGG | + | chr1_1:74408065-74408084 | None:intergenic | 40.0% | |
| GATGAAACCAACAACAGTGT+TGG | - | chr1_1:74408638-74408657 | Msa0043280:intron | 40.0% | |
| ATCAGAACCAACACTGTTGT+TGG | + | chr1_1:74408648-74408667 | None:intergenic | 40.0% | |
| CTTTCTTGAGAAATGGAGGA+TGG | + | chr1_1:74408674-74408693 | None:intergenic | 40.0% | |
| CATCCTCCATTTCTCAAGAA+AGG | - | chr1_1:74408672-74408691 | Msa0043280:intron | 40.0% | |
| CATCCTTTCTTGAGAAATGG+AGG | + | chr1_1:74408678-74408697 | None:intergenic | 40.0% | |
| TCTTTCCTTTGTGCCTTCAA+TGG | + | chr1_1:74408722-74408741 | None:intergenic | 40.0% | |
| ! | ATTGAAGGCACAAAGGAAAG+AGG | - | chr1_1:74408721-74408740 | Msa0043280:intron | 40.0% |
| GCACAAAGGAAAGAGGAAAA+TGG | - | chr1_1:74408728-74408747 | Msa0043280:intron | 40.0% | |
| GGAAAGAGGAAAATGGTAAG+TGG | - | chr1_1:74408735-74408754 | Msa0043280:intron | 40.0% | |
| ATGGTAAGTGGGAATTCACT+TGG | - | chr1_1:74408747-74408766 | Msa0043280:intron | 40.0% | |
| TGGTAAGTGGGAATTCACTT+GGG | - | chr1_1:74408748-74408767 | Msa0043280:intron | 40.0% | |
| TTACAGCTGAAAGATGGTCT+TGG | - | chr1_1:74408788-74408807 | Msa0043280:intron | 40.0% | |
| GCAACATCATCTTGCTCAAT+TGG | + | chr1_1:74408863-74408882 | None:intergenic | 40.0% | |
| ! | GGAAGCATGTAGTGAAACAA+AGG | + | chr1_1:74408983-74409002 | None:intergenic | 40.0% |
| !! | GTCGATTTGATCGATCTCTT+TGG | - | chr1_1:74409023-74409042 | Msa0043280:intron | 40.0% |
| ATTTGATCGATCTCTTTGGC+AGG | - | chr1_1:74409027-74409046 | Msa0043280:intron | 40.0% | |
| ! | ACCCTGATGAGGATTTTGTT+TGG | - | chr1_1:74409101-74409120 | Msa0043280:intron | 40.0% |
| CCCAAACAAAATCCTCATCA+GGG | + | chr1_1:74409105-74409124 | None:intergenic | 40.0% | |
| !! | CCCTGATGAGGATTTTGTTT+GGG | - | chr1_1:74409102-74409121 | Msa0043280:intron | 40.0% |
| ACCCAAACAAAATCCTCATC+AGG | + | chr1_1:74409106-74409125 | None:intergenic | 40.0% | |
| ATGTTGGAAGAACCATCAAG+TGG | + | chr1_1:74409138-74409157 | None:intergenic | 40.0% | |
| GAAAGAGATTTAACAGGGCA+AGG | - | chr1_1:74409164-74409183 | Msa0043280:intron | 40.0% | |
| TATATCTCGGACGAAGGAAA+AGG | + | chr1_1:74409211-74409230 | None:intergenic | 40.0% | |
| GAAGTTCATCTCTAACAGGA+AGG | + | chr1_1:74409240-74409259 | None:intergenic | 40.0% | |
| TCCTGTTGCAGTAGAATGTT+GGG | - | chr1_1:74409325-74409344 | Msa0043280:intron | 40.0% | |
| ATTGCTTATCAATCCAAGCG+AGG | - | chr1_1:74409349-74409368 | Msa0043280:intron | 40.0% | |
| TGGCCTATATGAATACCAAC+AGG | + | chr1_1:74409424-74409443 | None:intergenic | 40.0% | |
| !! | TCTTTCTGAGACAGAAAGCA+AGG | - | chr1_1:74409462-74409481 | Msa0043280:intron | 40.0% |
| TCACAGTTTGACCTTTGAAC+TGG | + | chr1_1:74409504-74409523 | None:intergenic | 40.0% | |
| AAAGGTCAAACTGTGATGCT+TGG | - | chr1_1:74409508-74409527 | Msa0043280:intron | 40.0% | |
| AAGGTCAAACTGTGATGCTT+GGG | - | chr1_1:74409509-74409528 | Msa0043280:intron | 40.0% | |
| GGATAAACGACACATTTGGA+AGG | - | chr1_1:74409710-74409729 | Msa0043280:intron | 40.0% | |
| AAGATTACAGGTGTGTATCC+AGG | + | chr1_1:74409736-74409755 | None:intergenic | 40.0% | |
| TTGTTACAGCAGTGAGAGAT+GGG | - | chr1_1:74409818-74409837 | Msa0043280:intron | 40.0% | |
| ! | TATCCAAAAGAAGAGCATGC+TGG | - | chr1_1:74409921-74409940 | Msa0043280:intron | 40.0% |
| GCAACAGCATCAATATTCCA+CGG | + | chr1_1:74410003-74410022 | None:intergenic | 40.0% | |
| !! | GCATATGTTTTTCAGACTCC+GGG | + | chr1_1:74410053-74410072 | None:intergenic | 40.0% |
| !! | CGCATATGTTTTTCAGACTC+CGG | + | chr1_1:74410054-74410073 | None:intergenic | 40.0% |
| !! | TGCGTCATGAGAAGCATTAT+AGG | - | chr1_1:74410070-74410089 | Msa0043280:intron | 40.0% |
| TACGCACGATGTTGCATATT+GGG | - | chr1_1:74410101-74410120 | Msa0043280:intron | 40.0% | |
| !!! | TGGGGAATTGGTTTTGGTTT+AGG | - | chr1_1:74410183-74410202 | Msa0043280:intron | 40.0% |
| AGAGAAACACTCTCACTGAA+TGG | - | chr1_1:74410427-74410446 | Msa0043280:CDS | 40.0% | |
| ! | GGTATAAGGAGTATGACACA+AGG | + | chr1_1:74410519-74410538 | None:intergenic | 40.0% |
| TTCTTCAGTATGGCTTATCC+TGG | + | chr1_1:74410657-74410676 | None:intergenic | 40.0% | |
| GGATAAGCCATACTGAAGAA+TGG | - | chr1_1:74410657-74410676 | Msa0043280:CDS | 40.0% | |
| AAGCTTCCCATTCTTCAGTA+TGG | + | chr1_1:74410667-74410686 | None:intergenic | 40.0% | |
| !! | TTTCTGTGCCTGATTTTGAC+TGG | - | chr1_1:74410690-74410709 | Msa0043280:intron | 40.0% |
| GAATTTGCAGACCGAGATTT+CGG | - | chr1_1:74410806-74410825 | Msa0043280:intron | 40.0% | |
| CTTGACATGAACCGAAATCT+CGG | + | chr1_1:74410820-74410839 | None:intergenic | 40.0% | |
| TTTCGGTTCATGTCAAGCTA+AGG | - | chr1_1:74410823-74410842 | Msa0043280:intron | 40.0% | |
| GAGCCTGTTTCAGTTAAAAG+TGG | - | chr1_1:74410881-74410900 | Msa0043280:CDS | 40.0% | |
| TAAAAGTGGCCCATACATTG+TGG | - | chr1_1:74410895-74410914 | Msa0043280:CDS | 40.0% | |
| CATTGTGGAAGTTAAACCTC+AGG | - | chr1_1:74410910-74410929 | Msa0043280:CDS | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr1_1:74412616-74412635 | None:intergenic | 40.0% |
| GAACATGATGAACTAGAGTG+AGG | + | chr1_1:74411296-74411315 | None:intergenic | 40.0% | |
| !!! | GTACAGTGGTGTTTTAGAAG+TGG | + | chr1_1:74411379-74411398 | None:intergenic | 40.0% |
| AGTGGCGATGATTTCTTTAC+GGG | + | chr1_1:74411422-74411441 | None:intergenic | 40.0% | |
| CATTACACCATCAATGGAGA+AGG | - | chr1_1:74411517-74411536 | Msa0043280:CDS | 40.0% | |
| TCCCGTATCATCTTCCTAAT+TGG | + | chr1_1:74411555-74411574 | None:intergenic | 40.0% | |
| ! | CTGAAATTTTTGTCACCGTG+CGG | + | chr1_1:74411753-74411772 | None:intergenic | 40.0% |
| AAAAAGGAGAGAAAACCGCA+CGG | - | chr1_1:74411779-74411798 | Msa0043280:CDS | 40.0% | |
| TACAAAATCCAGAAACCGTG+CGG | + | chr1_1:74411797-74411816 | None:intergenic | 40.0% | |
| GTGTAGTTGCTACTACTCAT+GGG | + | chr1_1:74411847-74411866 | None:intergenic | 40.0% | |
| AGTGTAGTTGCTACTACTCA+TGG | + | chr1_1:74411848-74411867 | None:intergenic | 40.0% | |
| ATTTGAGTGGAGACAAGAAC+TGG | - | chr1_1:74411915-74411934 | Msa0043280:CDS | 40.0% | |
| ! | TCTGGGTATGTTGATGAAGA+TGG | - | chr1_1:74412062-74412081 | Msa0043280:CDS | 40.0% |
| !! | TTCTTTTAAAGGAGGACCGT+TGG | + | chr1_1:74412198-74412217 | None:intergenic | 40.0% |
| TCTATGGTAGACCACACTTA+AGG | - | chr1_1:74412254-74412273 | Msa0043280:CDS | 40.0% | |
| GTCGGGATTTATTTGGCAAA+CGG | - | chr1_1:74412313-74412332 | Msa0043280:CDS | 40.0% | |
| GTGTGCTGAGTATTAATTGG+AGG | - | chr1_1:74412511-74412530 | Msa0043280:CDS | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr1_1:74412616-74412635 | Msa0043280:CDS | 40.0% |
| TGATCTACGATTGACAACAC+TGG | - | chr1_1:74412923-74412942 | Msa0043280:intron | 40.0% | |
| CCTGCAACAAAAATGTCAAG+TGG | + | chr1_1:74413085-74413104 | None:intergenic | 40.0% | |
| ! | CCACTTGACATTTTTGTTGC+AGG | - | chr1_1:74413082-74413101 | Msa0043280:intron | 40.0% |
| AGATCAGATGAGGACATGTT+TGG | - | chr1_1:74413197-74413216 | Msa0043280:intron | 40.0% | |
| GATCAGATGAGGACATGTTT+GGG | - | chr1_1:74413198-74413217 | Msa0043280:intron | 40.0% | |
| ATCAGATGAGGACATGTTTG+GGG | - | chr1_1:74413199-74413218 | Msa0043280:intron | 40.0% | |
| TTGGGGTAATAACAAGTGCA+AGG | - | chr1_1:74413216-74413235 | Msa0043280:intron | 40.0% | |
| TGGGGTAATAACAAGTGCAA+GGG | - | chr1_1:74413217-74413236 | Msa0043280:intron | 40.0% | |
| !! | GAGATTTTGAGGATGTTGCA+AGG | - | chr1_1:74413326-74413345 | Msa0043280:intron | 40.0% |
| ! | AGCAGTTTGTTCAGAAGCAT+TGG | + | chr1_1:74413357-74413376 | None:intergenic | 40.0% |
| TCGGTAGTAGCAACAATGTT+GGG | + | chr1_1:74413532-74413551 | None:intergenic | 40.0% | |
| ATCGGTAGTAGCAACAATGT+TGG | + | chr1_1:74413533-74413552 | None:intergenic | 40.0% | |
| GAGTGAGTGAGTGAGCAAAA+TGG | - | chr1_1:74408496-74408515 | Msa0043280:intron | 45.0% | |
| GAGTGAGCAAAATGGCTTCA+AGG | - | chr1_1:74408504-74408523 | Msa0043280:intron | 45.0% | |
| TTCTTCTCACGACCGAAAGA+CGG | + | chr1_1:74408569-74408588 | None:intergenic | 45.0% | |
| CTTTCGGTCGTGAGAAGAAA+AGG | - | chr1_1:74408570-74408589 | Msa0043280:intron | 45.0% | |
| GAAGAAAAGGCTTCCAAGAG+TGG | - | chr1_1:74408583-74408602 | Msa0043280:intron | 45.0% | |
| TGGTAACCAGCTTCCATTGA+AGG | - | chr1_1:74408706-74408725 | Msa0043280:intron | 45.0% | |
| TTTGTGCCTTCAATGGAAGC+TGG | + | chr1_1:74408715-74408734 | None:intergenic | 45.0% | |
| ! | AGCTTCCATTGAAGGCACAA+AGG | - | chr1_1:74408714-74408733 | Msa0043280:intron | 45.0% |
| TAGTGAAAAGCTCAGGTGGA+AGG | + | chr1_1:74408925-74408944 | None:intergenic | 45.0% | |
| TCAAATCGACCACCAAGATC+AGG | + | chr1_1:74409013-74409032 | None:intergenic | 45.0% | |
| GGAAGTTATCAACCCTGATG+AGG | - | chr1_1:74409090-74409109 | Msa0043280:intron | 45.0% | |
| GGTTCATGACTACCACTTGA+TGG | - | chr1_1:74409123-74409142 | Msa0043280:intron | 45.0% | |
| AGATTTAACAGGGCAAGGCT+TGG | - | chr1_1:74409169-74409188 | Msa0043280:intron | 45.0% | |
| ACGAAGGAAAAGGACTATGG+AGG | + | chr1_1:74409201-74409220 | None:intergenic | 45.0% | |
| ! | AGGAAGGGTTCGGTATATCT+CGG | + | chr1_1:74409224-74409243 | None:intergenic | 45.0% |
| CATCTCTAACAGGAAGGGTT+CGG | + | chr1_1:74409234-74409253 | None:intergenic | 45.0% | |
| ACATTCTACTGCAACAGGAG+AGG | + | chr1_1:74409324-74409343 | None:intergenic | 45.0% | |
| CTCCTGTTGCAGTAGAATGT+TGG | - | chr1_1:74409324-74409343 | Msa0043280:intron | 45.0% | |
| TCCCAACATTCTACTGCAAC+AGG | + | chr1_1:74409329-74409348 | None:intergenic | 45.0% | |
| ! | GATTCATGACTGACTCAAGC+TGG | + | chr1_1:74409444-74409463 | None:intergenic | 45.0% |
| AGGTCAAACTGTGATGCTTG+GGG | - | chr1_1:74409510-74409529 | Msa0043280:intron | 45.0% | |
| ACATGCTGAAATGAGGGGAA+AGG | - | chr1_1:74409600-74409619 | Msa0043280:intron | 45.0% | |
| AATGAGGGGAAAGGTTGTTC+TGG | - | chr1_1:74409609-74409628 | Msa0043280:intron | 45.0% | |
| TCGATACAACACTCCAGAGT+TGG | - | chr1_1:74409758-74409777 | Msa0043280:intron | 45.0% | |
| CGATACAACACTCCAGAGTT+GGG | - | chr1_1:74409759-74409778 | Msa0043280:intron | 45.0% | |
| CTTGTTACAGCAGTGAGAGA+TGG | - | chr1_1:74409817-74409836 | Msa0043280:intron | 45.0% | |
| ! | CTGGTGGTGTCTGAATTCAT+TGG | - | chr1_1:74409940-74409959 | Msa0043280:intron | 45.0% |
| TGATGCTGTTGCTGAAGCTA+TGG | - | chr1_1:74410011-74410030 | Msa0043280:intron | 45.0% | |
| AGCTATGGATTCCGCCTTAA+TGG | - | chr1_1:74410026-74410045 | Msa0043280:intron | 45.0% | |
| GTACGCACGATGTTGCATAT+TGG | - | chr1_1:74410100-74410119 | Msa0043280:intron | 45.0% | |
| CTTCTTGCAGGATCTGGAAA+GGG | - | chr1_1:74410131-74410150 | Msa0043280:intron | 45.0% | |
| CTTGTAGAGATCATCTGAGG+AGG | - | chr1_1:74410154-74410173 | Msa0043280:intron | 45.0% | |
| !! | AGATGCTGGGGAATTGGTTT+TGG | - | chr1_1:74410177-74410196 | Msa0043280:intron | 45.0% |
| ! | GGTGTTGCACTAATTGATCC+AGG | + | chr1_1:74410330-74410349 | None:intergenic | 45.0% |
| ATGGAAACAGCTTCAGCACT+AGG | + | chr1_1:74410351-74410370 | None:intergenic | 45.0% | |
| ACTGCACAAGCTGTTCAAGA+TGG | + | chr1_1:74410370-74410389 | None:intergenic | 45.0% | |
| !!! | GGGCCACTTTTAACTGAAAC+AGG | + | chr1_1:74410887-74410906 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr1_1:74412615-74412634 | None:intergenic | 45.0% |
| GCAAACGGAGGAAAAAGTGA+GGG | + | chr1_1:74411172-74411191 | None:intergenic | 45.0% | |
| GGGATTTATTTGGCAAACGG+AGG | + | chr1_1:74412316-74412335 | None:intergenic | 45.0% | |
| CCAGAAAGATGCACAAAGCA+AGG | + | chr1_1:74411644-74411663 | None:intergenic | 45.0% | |
| CCTTGCTTTGTGCATCTTTC+TGG | - | chr1_1:74411641-74411660 | Msa0043280:CDS | 45.0% | |
| AATAGACCCGCGTAATCCAA+CGG | - | chr1_1:74412179-74412198 | Msa0043280:CDS | 45.0% | |
| TGGTAGACCACACTTAAGGT+TGG | - | chr1_1:74412258-74412277 | Msa0043280:CDS | 45.0% | |
| GGGATTTATTTGGCAAACGG+AGG | - | chr1_1:74412316-74412335 | Msa0043280:CDS | 45.0% | |
| GCAAACGGAGGAAAACTTGA+AGG | - | chr1_1:74412328-74412347 | Msa0043280:CDS | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr1_1:74412615-74412634 | Msa0043280:CDS | 45.0% |
| !! | ACGGAGGGAGTACTTATTGT+TGG | - | chr1_1:74412631-74412650 | Msa0043280:CDS | 45.0% |
| !! | CGGAGGGAGTACTTATTGTT+GGG | - | chr1_1:74412632-74412651 | Msa0043280:CDS | 45.0% |
| TGCTAGCGTAACATGGTTCT+AGG | + | chr1_1:74412702-74412721 | None:intergenic | 45.0% | |
| AGAACCATGTTACGCTAGCA+TGG | - | chr1_1:74412702-74412721 | Msa0043280:CDS | 45.0% | |
| ATAGTAGCGCTACAACGTAG+TGG | - | chr1_1:74412774-74412793 | Msa0043280:CDS | 45.0% | |
| !! | CAACACTGGCTTGAAGTAGT+TGG | - | chr1_1:74412937-74412956 | Msa0043280:intron | 45.0% |
| TTTGTTGCAGGGTGTGAGTA+AGG | - | chr1_1:74413094-74413113 | Msa0043280:intron | 45.0% | |
| TTGTTGCAGGGTGTGAGTAA+GGG | - | chr1_1:74413095-74413114 | Msa0043280:intron | 45.0% | |
| ! | TGGTGATGACAGATCAGATG+AGG | - | chr1_1:74413187-74413206 | Msa0043280:intron | 45.0% |
| !! | TTTATTTATTTATTTATTTC+TGG | - | chr1_1:74408106-74408125 | Msa0043280:CDS | 5.0% |
| GTGGGAATTCACTTGGGATG+AGG | - | chr1_1:74408754-74408773 | Msa0043280:intron | 50.0% | |
| AGCTCAGGTGGAAGGAAAGT+TGG | + | chr1_1:74408917-74408936 | None:intergenic | 50.0% | |
| CGGACGAAGGAAAAGGACTA+TGG | + | chr1_1:74409204-74409223 | None:intergenic | 50.0% | |
| GTTCGGTATATCTCGGACGA+AGG | + | chr1_1:74409217-74409236 | None:intergenic | 50.0% | |
| CAATCCAAGCGAGGCTACAT+AGG | - | chr1_1:74409358-74409377 | Msa0043280:intron | 50.0% | |
| AAGACCTATGTAGCCTCGCT+TGG | + | chr1_1:74409365-74409384 | None:intergenic | 50.0% | |
| TCAAACTGTGATGCTTGGGG+TGG | - | chr1_1:74409513-74409532 | Msa0043280:intron | 50.0% | |
| CAAATCGCAAACCCTGCTAG+AGG | - | chr1_1:74409634-74409653 | Msa0043280:intron | 50.0% | |
| CTTCTTGCACATCCTTTCCG+CGG | + | chr1_1:74409660-74409679 | None:intergenic | 50.0% | |
| AACGACACATTTGGAAGGCC+TGG | - | chr1_1:74409715-74409734 | Msa0043280:intron | 50.0% | |
| AAGCGATTCTCTCCCAACTC+TGG | + | chr1_1:74409774-74409793 | None:intergenic | 50.0% | |
| ! | CCACCAGCATGCTCTTCTTT+TGG | + | chr1_1:74409927-74409946 | None:intergenic | 50.0% |
| ! | CCAAAAGAAGAGCATGCTGG+TGG | - | chr1_1:74409924-74409943 | Msa0043280:intron | 50.0% |
| AATCGCGCCGCTTAATGATG+GGG | + | chr1_1:74409971-74409990 | None:intergenic | 50.0% | |
| GAATCGCGCCGCTTAATGAT+GGG | + | chr1_1:74409972-74409991 | None:intergenic | 50.0% | |
| CATCATTAAGCGGCGCGATT+CGG | - | chr1_1:74409971-74409990 | Msa0043280:intron | 50.0% | |
| ATCATTAAGCGGCGCGATTC+GGG | - | chr1_1:74409972-74409991 | Msa0043280:intron | 50.0% | |
| TTCAGACTCCGGGACCATTA+AGG | + | chr1_1:74410043-74410062 | None:intergenic | 50.0% | |
| GCTTCTTGCAGGATCTGGAA+AGG | - | chr1_1:74410130-74410149 | Msa0043280:intron | 50.0% | |
| GGGCTTGTAGAGATCATCTG+AGG | - | chr1_1:74410151-74410170 | Msa0043280:intron | 50.0% | |
| ATCATCTGAGGAGGAGATGC+TGG | - | chr1_1:74410163-74410182 | Msa0043280:intron | 50.0% | |
| TCATCTGAGGAGGAGATGCT+GGG | - | chr1_1:74410164-74410183 | Msa0043280:intron | 50.0% | |
| !! | CAAAAGAATCGCTCGGTGCT+TGG | + | chr1_1:74410283-74410302 | None:intergenic | 50.0% |
| !!! | CAAGCACCGAGCGATTCTTT+TGG | - | chr1_1:74410281-74410300 | Msa0043280:intron | 50.0% |
| GATAGTACTATGGTGCAGCC+TGG | - | chr1_1:74410309-74410328 | Msa0043280:intron | 50.0% | |
| !! | CTTGGACTTGCTGCAGAACA+CGG | - | chr1_1:74410468-74410487 | Msa0043280:CDS | 50.0% |
| !! | AGAGTCCAAAGAGAGTGCTC+TGG | - | chr1_1:74410772-74410791 | Msa0043280:intron | 50.0% |
| ! | CCAAACCAGAGCACTCTCTT+TGG | + | chr1_1:74410780-74410799 | None:intergenic | 50.0% |
| !! | CCAAAGAGAGTGCTCTGGTT+TGG | - | chr1_1:74410777-74410796 | Msa0043280:intron | 50.0% |
| GGCAAACGGAGGAAAAAGTG+AGG | + | chr1_1:74411173-74411192 | None:intergenic | 50.0% | |
| CCACTTAGGATTTGCCACGT+GGG | + | chr1_1:74411242-74411261 | None:intergenic | 50.0% | |
| GCCAAAGACGAACTCAACGA+CGG | - | chr1_1:74411697-74411716 | Msa0043280:CDS | 50.0% | |
| GGTTGTCGTTGTTGTGGTTG+AGG | + | chr1_1:74411732-74411751 | None:intergenic | 50.0% | |
| AGAGAAAACCGCACGGTTTC+TGG | - | chr1_1:74411786-74411805 | Msa0043280:CDS | 50.0% | |
| ! | TGGTGGACCAACCTTAAGTG+TGG | + | chr1_1:74412268-74412287 | None:intergenic | 50.0% |
| CAAGGAAACACGTCCGCAAT+GGG | + | chr1_1:74413254-74413273 | None:intergenic | 50.0% | |
| ! | GGTTTTTGACCAACGGTGCA+AGG | + | chr1_1:74413272-74413291 | None:intergenic | 50.0% |
| CCAGCAACAGTTGCCACTCT+TGG | + | chr1_1:74408599-74408618 | None:intergenic | 55.0% | |
| CCAAGAGTGGCAACTGTTGC+TGG | - | chr1_1:74408596-74408615 | Msa0043280:intron | 55.0% | |
| GATGCTTGGGGTGGATGACA+TGG | - | chr1_1:74409522-74409541 | Msa0043280:intron | 55.0% | |
| GGCTGCTCCCCATCATTAAG+CGG | - | chr1_1:74409961-74409980 | Msa0043280:intron | 55.0% | |
| CGAATCGCGCCGCTTAATGA+TGG | + | chr1_1:74409973-74409992 | None:intergenic | 55.0% | |
| GGATTCCGCCTTAATGGTCC+CGG | - | chr1_1:74410032-74410051 | Msa0043280:intron | 55.0% | |
| AGACTCCGGGACCATTAAGG+CGG | + | chr1_1:74410040-74410059 | None:intergenic | 55.0% | |
| GCGTAGCTTCTTGCAGGATC+TGG | - | chr1_1:74410125-74410144 | Msa0043280:intron | 55.0% | |
| CATCTGAGGAGGAGATGCTG+GGG | - | chr1_1:74410165-74410184 | Msa0043280:intron | 55.0% | |
| AGGAGGAGATGCTGGGGAAT+TGG | - | chr1_1:74410171-74410190 | Msa0043280:intron | 55.0% | |
| TCCGTTAGTAAGAGCCCACG+TGG | - | chr1_1:74411225-74411244 | Msa0043280:CDS | 55.0% | |
| GCCACGTGGGCTCTTACTAA+CGG | + | chr1_1:74411229-74411248 | None:intergenic | 55.0% | |
| CCCACGTGGCAAATCCTAAG+TGG | - | chr1_1:74411239-74411258 | Msa0043280:CDS | 55.0% | |
| GCCACTTAGGATTTGCCACG+TGG | + | chr1_1:74411243-74411262 | None:intergenic | 55.0% | |
| GCCGTCGTTGAGTTCGTCTT+TGG | + | chr1_1:74411701-74411720 | None:intergenic | 55.0% | |
| CCACAACAACGACAACCGCA+CGG | - | chr1_1:74411735-74411754 | Msa0043280:CDS | 55.0% | |
| AGGAGGACCGTTGGATTACG+CGG | + | chr1_1:74412189-74412208 | None:intergenic | 55.0% | |
| TCGGCCATGCTAGCGTAACA+TGG | + | chr1_1:74412709-74412728 | None:intergenic | 55.0% | |
| GGCATCTCTATCGCCCATTG+CGG | - | chr1_1:74413238-74413257 | Msa0043280:intron | 55.0% | |
| GCAAGGAAACACGTCCGCAA+TGG | + | chr1_1:74413255-74413274 | None:intergenic | 55.0% | |
| GACGTGTTTCCTTGCACCGT+TGG | - | chr1_1:74413260-74413279 | Msa0043280:intron | 55.0% | |
| TCATGCGGCTCGCCGTCTTT+CGG | - | chr1_1:74408554-74408573 | Msa0043280:intron | 60.0% | |
| CTTCCGCTGTCGCCTGATCT+TGG | - | chr1_1:74408998-74409017 | Msa0043280:intron | 60.0% | |
| CCACCAAGATCAGGCGACAG+CGG | + | chr1_1:74409004-74409023 | None:intergenic | 60.0% | |
| TTGGGCGCGTAGCTTCTTGC+AGG | - | chr1_1:74410119-74410138 | Msa0043280:intron | 60.0% | |
| GACGAACTCAACGACGGCGA+CGG | - | chr1_1:74411703-74411722 | Msa0043280:CDS | 60.0% | |
| CCGTGCGGTTGTCGTTGTTG+TGG | + | chr1_1:74411738-74411757 | None:intergenic | 60.0% | |
| GGAGGACCGTTGGATTACGC+GGG | + | chr1_1:74412188-74412207 | None:intergenic | 60.0% | |
| CCGCTGTCGCCTGATCTTGG+TGG | - | chr1_1:74409001-74409020 | Msa0043280:intron | 65.0% | |
| GCAAACCCTGCTAGAGGCCG+CGG | - | chr1_1:74409640-74409659 | Msa0043280:intron | 65.0% | |
| CCTTTCCGCGGCCTCTAGCA+GGG | + | chr1_1:74409648-74409667 | None:intergenic | 65.0% | |
| TCCTTTCCGCGGCCTCTAGC+AGG | + | chr1_1:74409649-74409668 | None:intergenic | 65.0% | |
| ! | GCGCGATTCGGGTGAATCCG+TGG | - | chr1_1:74409983-74410002 | Msa0043280:intron | 65.0% |
| CCCTGCTAGAGGCCGCGGAA+AGG | - | chr1_1:74409645-74409664 | Msa0043280:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 74407692 | 74413659 | 74407692 | ID=Msa0043280;Name=Msa0043280 |
| chr1_1 | mRNA | 74407692 | 74413659 | 74407692 | ID=Msa0043280-mRNA-1;Parent=Msa0043280;Name=Msa0043280-mRNA-1;_AED=0.01;_eAED=0.01;_QI=307|1|1|1|0.66|0.5|4|250|855 |
| chr1_1 | exon | 74407692 | 74408247 | 74407692 | ID=Msa0043280-mRNA-1:exon:25065;Parent=Msa0043280-mRNA-1 |
| chr1_1 | exon | 74410420 | 74410693 | 74410420 | ID=Msa0043280-mRNA-1:exon:25064;Parent=Msa0043280-mRNA-1 |
| chr1_1 | exon | 74410849 | 74412869 | 74410849 | ID=Msa0043280-mRNA-1:exon:25063;Parent=Msa0043280-mRNA-1 |
| chr1_1 | exon | 74413386 | 74413659 | 74413386 | ID=Msa0043280-mRNA-1:exon:25062;Parent=Msa0043280-mRNA-1 |
| chr1_1 | five_prime_UTR | 74413386 | 74413659 | 74413386 | ID=Msa0043280-mRNA-1:five_prime_utr;Parent=Msa0043280-mRNA-1 |
| chr1_1 | five_prime_UTR | 74412837 | 74412869 | 74412837 | ID=Msa0043280-mRNA-1:five_prime_utr;Parent=Msa0043280-mRNA-1 |
| chr1_1 | CDS | 74410849 | 74412836 | 74410849 | ID=Msa0043280-mRNA-1:cds;Parent=Msa0043280-mRNA-1 |
| chr1_1 | CDS | 74410420 | 74410693 | 74410420 | ID=Msa0043280-mRNA-1:cds;Parent=Msa0043280-mRNA-1 |
| chr1_1 | CDS | 74407942 | 74408247 | 74407942 | ID=Msa0043280-mRNA-1:cds;Parent=Msa0043280-mRNA-1 |
| chr1_1 | three_prime_UTR | 74407692 | 74407941 | 74407692 | ID=Msa0043280-mRNA-1:three_prime_utr;Parent=Msa0043280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
