Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0182380 | XP_013470155.1 | 99.063 | 854 | 8 | 0 | 1 | 854 | 1 | 854 | 0.0 | 1764 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0182380 | sp|O23617|TPS5_ARATH | 77.374 | 853 | 189 | 3 | 1 | 850 | 1 | 852 | 0.0 | 1409 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0182380 | A0A072VRW8 | 99.063 | 854 | 8 | 0 | 1 | 854 | 1 | 854 | 0.0 | 1764 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031220 | Msa0182380 | 0.844179 | 8.875262e-59 | -8.615850e-47 |
| Msa0043280 | Msa0182380 | 0.881296 | 2.700223e-70 | -8.615850e-47 |
| Msa0053830 | Msa0182380 | 0.804168 | 2.458436e-49 | -8.615850e-47 |
| Msa0078510 | Msa0182380 | 0.841050 | 6.009361e-58 | -8.615850e-47 |
| Msa0099660 | Msa0182380 | 0.809502 | 1.832925e-50 | -8.615850e-47 |
| Msa0099670 | Msa0182380 | 0.818590 | 1.810295e-52 | -8.615850e-47 |
| Msa0126290 | Msa0182380 | 0.847962 | 8.295587e-60 | -8.615850e-47 |
| Msa0137200 | Msa0182380 | 0.955251 | 4.656089e-113 | -8.615850e-47 |
| Msa0171170 | Msa0182380 | 0.847482 | 1.124459e-59 | -8.615850e-47 |
| Msa0182380 | Msa0275690 | 0.803239 | 3.832284e-49 | -8.615850e-47 |
| Msa0182380 | Msa0660330 | 0.811438 | 7.001323e-51 | -8.615850e-47 |
| Msa0182380 | Msa1404500 | 0.995024 | 2.573340e-212 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0182380 | MtrunA17_Chr1g0209251 | 99.063 | 854 | 8 | 0 | 1 | 854 | 1 | 854 | 0.0 | 1764 |
| Msa0182380 | MtrunA17_Chr8g0391971 | 72.706 | 850 | 224 | 5 | 1 | 843 | 1 | 849 | 0.0 | 1313 |
| Msa0182380 | MtrunA17_Chr1g0161531 | 72.535 | 852 | 224 | 6 | 1 | 843 | 1 | 851 | 0.0 | 1300 |
| Msa0182380 | MtrunA17_Chr4g0041381 | 64.947 | 853 | 288 | 3 | 1 | 844 | 1 | 851 | 0.0 | 1203 |
| Msa0182380 | MtrunA17_Chr8g0364961 | 66.982 | 845 | 271 | 2 | 1 | 843 | 1 | 839 | 0.0 | 1182 |
| Msa0182380 | MtrunA17_Chr4g0073041 | 60.050 | 801 | 310 | 7 | 52 | 846 | 47 | 843 | 0.0 | 1002 |
| Msa0182380 | MtrunA17_Chr3g0117891 | 53.766 | 770 | 353 | 2 | 83 | 850 | 3 | 771 | 0.0 | 844 |
| Msa0182380 | MtrunA17_Chr3g0107401 | 49.082 | 599 | 275 | 3 | 61 | 659 | 1 | 569 | 0.0 | 576 |
| Msa0182380 | MtrunA17_Chr2g0314621 | 35.857 | 753 | 424 | 19 | 58 | 792 | 122 | 833 | 8.08e-144 | 449 |
| Msa0182380 | MtrunA17_Chr8g0359371 | 35.714 | 756 | 423 | 21 | 58 | 792 | 83 | 796 | 1.03e-139 | 437 |
| Msa0182380 | MtrunA17_Chr8g0380051 | 39.244 | 344 | 184 | 10 | 58 | 398 | 75 | 396 | 9.36e-71 | 240 |
| Msa0182380 | MtrunA17_Chr8g0380061 | 32.877 | 438 | 244 | 14 | 387 | 806 | 5 | 410 | 4.52e-57 | 204 |
| Msa0182380 | MtrunA17_Chr3g0107421 | 48.485 | 165 | 85 | 0 | 252 | 416 | 1 | 165 | 2.14e-48 | 169 |
| Msa0182380 | MtrunA17_Chr3g0116901 | 53.383 | 133 | 61 | 1 | 60 | 192 | 39 | 170 | 7.79e-46 | 162 |
| Msa0182380 | MtrunA17_Chr3g0107411 | 51.701 | 147 | 71 | 0 | 443 | 589 | 1 | 147 | 1.87e-45 | 160 |
| Msa0182380 | MtrunA17_Chr3g0107431 | 42.241 | 116 | 52 | 2 | 58 | 173 | 9 | 109 | 1.09e-24 | 99.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0182380 | AT4G17770.1 | 77.374 | 853 | 189 | 3 | 1 | 850 | 1 | 852 | 0.0 | 1409 |
| Msa0182380 | AT4G17770.2 | 77.374 | 853 | 189 | 3 | 1 | 850 | 1 | 852 | 0.0 | 1409 |
| Msa0182380 | AT1G68020.2 | 71.346 | 862 | 222 | 7 | 1 | 843 | 1 | 856 | 0.0 | 1300 |
| Msa0182380 | AT1G68020.3 | 71.346 | 862 | 222 | 7 | 1 | 843 | 1 | 856 | 0.0 | 1300 |
| Msa0182380 | AT1G06410.3 | 67.217 | 848 | 266 | 4 | 1 | 844 | 1 | 840 | 0.0 | 1179 |
| Msa0182380 | AT1G06410.1 | 67.217 | 848 | 266 | 4 | 1 | 844 | 1 | 840 | 0.0 | 1179 |
| Msa0182380 | AT1G06410.2 | 67.217 | 848 | 266 | 4 | 1 | 844 | 1 | 840 | 0.0 | 1179 |
| Msa0182380 | AT1G23870.1 | 63.860 | 855 | 307 | 1 | 1 | 853 | 1 | 855 | 0.0 | 1158 |
| Msa0182380 | AT1G70290.1 | 62.307 | 841 | 310 | 3 | 1 | 839 | 1 | 836 | 0.0 | 1117 |
| Msa0182380 | AT1G60140.6 | 61.091 | 843 | 326 | 1 | 1 | 841 | 1 | 843 | 0.0 | 1108 |
| Msa0182380 | AT1G60140.1 | 61.091 | 843 | 326 | 1 | 1 | 841 | 1 | 843 | 0.0 | 1108 |
| Msa0182380 | AT1G60140.2 | 61.091 | 843 | 326 | 1 | 1 | 841 | 1 | 843 | 0.0 | 1108 |
| Msa0182380 | AT1G60140.5 | 61.091 | 843 | 326 | 1 | 1 | 841 | 1 | 843 | 0.0 | 1108 |
| Msa0182380 | AT1G60140.4 | 61.091 | 843 | 326 | 1 | 1 | 841 | 1 | 843 | 0.0 | 1108 |
| Msa0182380 | AT1G68020.1 | 71.994 | 682 | 168 | 6 | 1 | 665 | 1 | 676 | 0.0 | 1043 |
| Msa0182380 | AT2G18700.1 | 58.392 | 846 | 338 | 7 | 1 | 842 | 1 | 836 | 0.0 | 1043 |
| Msa0182380 | AT1G70290.2 | 58.502 | 841 | 304 | 4 | 1 | 839 | 1 | 798 | 0.0 | 1027 |
| Msa0182380 | AT1G60140.3 | 61.804 | 754 | 288 | 0 | 1 | 754 | 1 | 754 | 0.0 | 1006 |
| Msa0182380 | AT1G16980.1 | 34.761 | 817 | 462 | 26 | 60 | 850 | 13 | 784 | 1.05e-145 | 450 |
| Msa0182380 | AT1G78580.4 | 34.875 | 757 | 431 | 19 | 57 | 792 | 90 | 805 | 3.66e-141 | 442 |
| Msa0182380 | AT1G78580.1 | 34.875 | 757 | 431 | 19 | 57 | 792 | 90 | 805 | 3.66e-141 | 442 |
| Msa0182380 | AT1G78580.2 | 34.875 | 757 | 431 | 19 | 57 | 792 | 90 | 805 | 3.66e-141 | 442 |
| Msa0182380 | AT1G78580.3 | 34.875 | 757 | 431 | 19 | 57 | 792 | 90 | 805 | 3.66e-141 | 442 |
| Msa0182380 | AT4G27550.2 | 33.976 | 830 | 450 | 27 | 56 | 837 | 1 | 780 | 4.77e-137 | 427 |
| Msa0182380 | AT4G27550.1 | 34.135 | 832 | 455 | 28 | 56 | 837 | 1 | 789 | 1.25e-136 | 426 |
| Msa0182380 | AT1G16980.2 | 35.220 | 636 | 353 | 20 | 60 | 681 | 13 | 603 | 6.68e-118 | 373 |
Find 211 sgRNAs with CRISPR-Local
Find 404 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATGCAAGAATACCCTTTC+TGG | 0.172862 | 1_4:-70859631 | None:intergenic |
| ACAGATAGCTTTCTAAAGTT+TGG | 0.197254 | 1_4:+70856074 | None:intergenic |
| CTTCTGAATTCTGACCTTAT+AGG | 0.215099 | 1_4:-70857034 | Msa0182380:CDS |
| AGATGCTGGGGAATTGGTTT+TGG | 0.230491 | 1_4:-70856125 | Msa0182380:CDS |
| CCACCAGCATGCTCTTCTTT+TGG | 0.238177 | 1_4:+70856378 | None:intergenic |
| AGGAATCAGCTTAAAACTTT+TGG | 0.239280 | 1_4:-70856747 | Msa0182380:CDS |
| TTCTGAATTCTGACCTTATA+GGG | 0.267422 | 1_4:-70857033 | Msa0182380:CDS |
| CAAAAGAATTAGAATGAAAA+TGG | 0.273130 | 1_4:+70854283 | None:intergenic |
| TGTGTCTTCCAAGTAATATT+TGG | 0.281526 | 1_4:+70854628 | None:intergenic |
| CTTCCTGTTGGTATTCATAT+AGG | 0.288144 | 1_4:-70856884 | Msa0182380:CDS |
| CATCATTAAGCGGCGCGATT+CGG | 0.290810 | 1_4:-70856331 | Msa0182380:CDS |
| CAAGCACCGAGCGATTCTTT+TGG | 0.298713 | 1_4:-70856021 | Msa0182380:CDS |
| CCAAGAGTGGCAACTGTTGC+TGG | 0.299481 | 1_4:-70857706 | Msa0182380:CDS |
| CACAATGAAAACACAATTCT+TGG | 0.302805 | 1_4:+70855908 | None:intergenic |
| GAATTTGCAGACCGAGATTT+CGG | 0.306462 | 1_4:-70855496 | Msa0182380:CDS |
| CAGATAGCTTTCTAAAGTTT+GGG | 0.314076 | 1_4:+70856075 | None:intergenic |
| TCCTTTCCGCGGCCTCTAGC+AGG | 0.317442 | 1_4:+70856656 | None:intergenic |
| TAACGGAGAAGAAGAATCTT+TGG | 0.323144 | 1_4:-70859509 | Msa0182380:five_prime_UTR |
| TTGCTTAATGAGGAGATAAC+TGG | 0.325875 | 1_4:+70854537 | None:intergenic |
| CTTGGTTGGTTATCTTGTAT+TGG | 0.332117 | 1_4:-70854449 | Msa0182380:three_prime_UTR |
| TACGCACGATGTTGCATATT+GGG | 0.340179 | 1_4:-70856201 | Msa0182380:CDS |
| CCAAACCAGAGCACTCTCTT+TGG | 0.342936 | 1_4:+70855525 | None:intergenic |
| TCTTTCCTTTGTGCCTTCAA+TGG | 0.344898 | 1_4:+70857583 | None:intergenic |
| TTTGGATTATGATAGTACTA+TGG | 0.345249 | 1_4:-70856003 | Msa0182380:CDS |
| AGCTATGGATTCCGCCTTAA+TGG | 0.346795 | 1_4:-70856276 | Msa0182380:CDS |
| GGTTTAACTTCCACAATGTA+TGG | 0.356426 | 1_4:+70855397 | None:intergenic |
| GCAACATCATCTTGCTCAAT+TGG | 0.362213 | 1_4:+70857442 | None:intergenic |
| TCTGTATATAACTGCATAAC+TGG | 0.363196 | 1_4:+70855574 | None:intergenic |
| AGGAGGAGATGCTGGGGAAT+TGG | 0.363586 | 1_4:-70856131 | Msa0182380:CDS |
| AAGCTTCCCATTCTTCAGTA+TGG | 0.363738 | 1_4:+70855638 | None:intergenic |
| AGATCAGATGAGGACATGTT+TGG | 0.364020 | 1_4:-70854731 | Msa0182380:CDS |
| TTCAGACTCCGGGACCATTA+AGG | 0.365240 | 1_4:+70856262 | None:intergenic |
| CTTCCGCTGTCGCCTGATCT+TGG | 0.368992 | 1_4:-70857304 | Msa0182380:CDS |
| CTAAGAAGTTCATCTCTAAC+AGG | 0.372241 | 1_4:+70857061 | None:intergenic |
| CCAATGCATAGAACAAAATC+TGG | 0.378049 | 1_4:+70854761 | None:intergenic |
| GTTGTATCGATCAAGATTAC+AGG | 0.378659 | 1_4:+70856557 | None:intergenic |
| GGTTCATGACTACCACTTGA+TGG | 0.384948 | 1_4:-70857179 | Msa0182380:CDS |
| ATCATCTGAGGAGGAGATGC+TGG | 0.385858 | 1_4:-70856139 | Msa0182380:CDS |
| GTCGATTTGATCGATCTCTT+TGG | 0.389308 | 1_4:-70857279 | Msa0182380:CDS |
| TTTGTTGCAGGGTGTGAGTA+AGG | 0.391370 | 1_4:-70854834 | Msa0182380:intron |
| CTTTCGGTCGTGAGAAGAAA+AGG | 0.392381 | 1_4:-70857732 | Msa0182380:CDS |
| GTGTGTTGTGTTATTATTAA+CGG | 0.393755 | 1_4:-70859526 | Msa0182380:five_prime_UTR |
| ATCTGTTTCCAGTCAAAATC+AGG | 0.395840 | 1_4:+70855604 | None:intergenic |
| GTTTCTGTAAGCAACATCTA+TGG | 0.403151 | 1_4:-70857345 | Msa0182380:CDS |
| GCACAAAGGAAAGAGGAAAA+TGG | 0.406553 | 1_4:-70857574 | Msa0182380:CDS |
| ACATTGTTTCAGCTTATAAG+AGG | 0.408474 | 1_4:-70856046 | Msa0182380:CDS |
| GATCATCCTCTCTTGAGAAA+TGG | 0.409237 | 1_4:+70857624 | None:intergenic |
| AAAAGGATAAACGACACATT+TGG | 0.409911 | 1_4:-70856596 | Msa0182380:CDS |
| ATCATTAAGCGGCGCGATTC+GGG | 0.410018 | 1_4:-70856330 | Msa0182380:CDS |
| TAAGGAACTTCTTGATCATC+TGG | 0.414096 | 1_4:-70855461 | Msa0182380:CDS |
| TGCGTCATGAGAAGCATTAT+AGG | 0.414289 | 1_4:-70856232 | Msa0182380:CDS |
| GATCAGATGAGGACATGTTT+GGG | 0.414515 | 1_4:-70854730 | Msa0182380:CDS |
| CGAAAGTATGAAACCCTATA+AGG | 0.416886 | 1_4:+70857020 | None:intergenic |
| GTACGCACGATGTTGCATAT+TGG | 0.417861 | 1_4:-70856202 | Msa0182380:CDS |
| CCAGCAACAGTTGCCACTCT+TGG | 0.421922 | 1_4:+70857706 | None:intergenic |
| TCCCAACATTCTACTGCAAC+AGG | 0.422981 | 1_4:+70856976 | None:intergenic |
| TCTGATAACAATGCAACAAA+AGG | 0.423959 | 1_4:-70854792 | Msa0182380:CDS |
| TCCTGTTGCAGTAGAATGTT+GGG | 0.425459 | 1_4:-70856977 | Msa0182380:CDS |
| AATGAGGGGAAAGGTTGTTC+TGG | 0.426046 | 1_4:-70856693 | Msa0182380:CDS |
| CCAAAGAGAGTGCTCTGGTT+TGG | 0.428765 | 1_4:-70855525 | Msa0182380:CDS |
| TCATGCGGCTCGCCGTCTTT+CGG | 0.430507 | 1_4:-70857748 | Msa0182380:CDS |
| AAGTAATATTTGGCTTTGCT+TGG | 0.430940 | 1_4:+70854638 | None:intergenic |
| CGGACGAAGGAAAAGGACTA+TGG | 0.431241 | 1_4:+70857101 | None:intergenic |
| GATGTTGAAACAATCTATAT+TGG | 0.433844 | 1_4:-70857487 | Msa0182380:CDS |
| GCGTAGCTTCTTGCAGGATC+TGG | 0.434843 | 1_4:-70856177 | Msa0182380:CDS |
| AGGATTTCGAGTAATAGCTT+TGG | 0.436633 | 1_4:-70856099 | Msa0182380:CDS |
| ACCCAAACAAAATCCTCATC+AGG | 0.437641 | 1_4:+70857199 | None:intergenic |
| CGAATCGCGCCGCTTAATGA+TGG | 0.438856 | 1_4:+70856332 | None:intergenic |
| TTGGGCGCGTAGCTTCTTGC+AGG | 0.441346 | 1_4:-70856183 | Msa0182380:CDS |
| TCAAATCGACCACCAAGATC+AGG | 0.444062 | 1_4:+70857292 | None:intergenic |
| AAGGTCAAACTGTGATGCTT+GGG | 0.444131 | 1_4:-70856793 | Msa0182380:CDS |
| CAAAAGAATCGCTCGGTGCT+TGG | 0.449492 | 1_4:+70856022 | None:intergenic |
| TCACAGTTTGACCTTTGAAC+TGG | 0.450018 | 1_4:+70856801 | None:intergenic |
| AACGACACATTTGGAAGGCC+TGG | 0.452363 | 1_4:-70856587 | Msa0182380:CDS |
| AACTAACATTCATTCATTCA+AGG | 0.456387 | 1_4:-70859469 | Msa0182380:intron |
| GGAAAGAGGAAAATGGTAAG+TGG | 0.457394 | 1_4:-70857567 | Msa0182380:CDS |
| TTTGTCTATAAAACCAGAAA+GGG | 0.457718 | 1_4:+70859618 | None:intergenic |
| CAAGAGAGGATGATCATTGT+TGG | 0.460566 | 1_4:-70857616 | Msa0182380:CDS |
| GATTGTATCTAAGTTGTTGA+AGG | 0.461165 | 1_4:-70854378 | Msa0182380:three_prime_UTR |
| TGGTAACCAGCTTCCATTGA+AGG | 0.461364 | 1_4:-70857596 | Msa0182380:CDS |
| GAAACATATACTAATGCTAT+TGG | 0.462818 | 1_4:-70854495 | Msa0182380:three_prime_UTR |
| TTACAGCTGAAAGATGGTCT+TGG | 0.463158 | 1_4:-70857514 | Msa0182380:CDS |
| AAGACCTATGTAGCCTCGCT+TGG | 0.466700 | 1_4:+70856940 | None:intergenic |
| AGCAGTTTGTTCAGAAGCAT+TGG | 0.467175 | 1_4:+70854574 | None:intergenic |
| AGATTTAACAGGGCAAGGCT+TGG | 0.467489 | 1_4:-70857133 | Msa0182380:CDS |
| GACAAGCCATACTGAAGAAT+GGG | 0.468184 | 1_4:-70855644 | Msa0182380:CDS |
| CAAGGAAACACGTCCGCAAT+GGG | 0.469994 | 1_4:+70854677 | None:intergenic |
| CTACAAATGATATACTCATA+TGG | 0.471654 | 1_4:+70856449 | None:intergenic |
| CTGGTGGTGTCTGAATTCAT+TGG | 0.473518 | 1_4:-70856362 | Msa0182380:CDS |
| ATTTGATCGATCTCTTTGGC+AGG | 0.477042 | 1_4:-70857275 | Msa0182380:CDS |
| AAAGGTCAAACTGTGATGCT+TGG | 0.478423 | 1_4:-70856794 | Msa0182380:CDS |
| AAACTTATGCAACCGTGAAA+AGG | 0.479354 | 1_4:-70856613 | Msa0182380:CDS |
| CAATCCAAGCGAGGCTACAT+AGG | 0.479480 | 1_4:-70856944 | Msa0182380:CDS |
| TTTGTGCCTTCAATGGAAGC+TGG | 0.479814 | 1_4:+70857590 | None:intergenic |
| TTGTAGTATTTGTGAATACT+TGG | 0.480347 | 1_4:-70854467 | Msa0182380:three_prime_UTR |
| TCGGTAGTAGCAACAATGTT+GGG | 0.481685 | 1_4:+70854399 | None:intergenic |
| TACATAGGTCTTGAGTACTA+TGG | 0.482799 | 1_4:-70856929 | Msa0182380:CDS |
| CTCCTGTTGCAGTAGAATGT+TGG | 0.483716 | 1_4:-70856978 | Msa0182380:CDS |
| TTAGAAAAGCTTGCTTAATG+AGG | 0.484009 | 1_4:+70854527 | None:intergenic |
| TATATCTCGGACGAAGGAAA+AGG | 0.486903 | 1_4:+70857094 | None:intergenic |
| GAATCGCGCCGCTTAATGAT+GGG | 0.487141 | 1_4:+70856333 | None:intergenic |
| CGATACAACACTCCAGAGTT+GGG | 0.487205 | 1_4:-70856543 | Msa0182380:CDS |
| GAGTGAGCAAAATGGCTTCA+AGG | 0.488129 | 1_4:-70857798 | Msa0182380:exon |
| AAGCGATTCTCTCCCAACTC+TGG | 0.499258 | 1_4:+70856531 | None:intergenic |
| TGATGCTGTTGCTGAAGCTA+TGG | 0.500313 | 1_4:-70856291 | Msa0182380:CDS |
| TTCAACAACTTAGATACAAT+CGG | 0.501980 | 1_4:+70854380 | None:intergenic |
| ATGGTAAGTGGGAATTCACT+TGG | 0.502564 | 1_4:-70857555 | Msa0182380:CDS |
| AAGCAAAGCCAAATATTACT+TGG | 0.502945 | 1_4:-70854636 | Msa0182380:CDS |
| CTTGTTACAGCAGTGAGAGA+TGG | 0.504181 | 1_4:-70856485 | Msa0182380:CDS |
| GACGTGTTTCCTTGCACCGT+TGG | 0.505796 | 1_4:-70854668 | Msa0182380:CDS |
| TGGCCTATATGAATACCAAC+AGG | 0.508722 | 1_4:+70856881 | None:intergenic |
| CATCTCTAACAGGAAGGGTT+CGG | 0.508766 | 1_4:+70857071 | None:intergenic |
| AAGATTACAGGTGTGTATCC+AGG | 0.509121 | 1_4:+70856569 | None:intergenic |
| TCGATACAACACTCCAGAGT+TGG | 0.509920 | 1_4:-70856544 | Msa0182380:CDS |
| GGACAAGCCATACTGAAGAA+TGG | 0.510330 | 1_4:-70855645 | Msa0182380:CDS |
| AGCTCAGGTGGAAGGAAAGT+TGG | 0.512723 | 1_4:+70857388 | None:intergenic |
| GAAAGAGATTTAACAGGGCA+AGG | 0.513388 | 1_4:-70857138 | Msa0182380:CDS |
| CTGATAACAATGCAACAAAA+GGG | 0.514427 | 1_4:-70854791 | Msa0182380:CDS |
| GTGGGAATTCACTTGGGATG+AGG | 0.515265 | 1_4:-70857548 | Msa0182380:CDS |
| ATGGAAACAGCTTCAGCACT+AGG | 0.515512 | 1_4:+70855954 | None:intergenic |
| TTGTTGCAGGGTGTGAGTAA+GGG | 0.516408 | 1_4:-70854833 | Msa0182380:intron |
| TTCTTCTCACGACCGAAAGA+CGG | 0.519257 | 1_4:+70857736 | None:intergenic |
| GAGTGAGTGAGTGAGCAAAA+TGG | 0.520874 | 1_4:-70857806 | Msa0182380:exon |
| TTCATACTTTCGACTATGCT+AGG | 0.522500 | 1_4:-70857009 | Msa0182380:CDS |
| CTTCTTGCAGGATCTGGAAA+GGG | 0.524177 | 1_4:-70856171 | Msa0182380:CDS |
| CTTGACATGAACCGAAATCT+CGG | 0.524650 | 1_4:+70855485 | None:intergenic |
| GATAGTACTATGGTGCAGCC+TGG | 0.524793 | 1_4:-70855993 | Msa0182380:CDS |
| TCATCTGAGGAGGAGATGCT+GGG | 0.527479 | 1_4:-70856138 | Msa0182380:CDS |
| CATTGTGGAAGTTAAACCTC+AGG | 0.529575 | 1_4:-70855392 | Msa0182380:intron |
| AGCATTAAGATTCTTCCTGT+TGG | 0.529787 | 1_4:-70856896 | Msa0182380:CDS |
| TGAAGTAAGATCTAACAAGT+TGG | 0.532544 | 1_4:+70857768 | None:intergenic |
| GAGCCTGTTTCAGTTAAAAG+TGG | 0.534096 | 1_4:-70855421 | Msa0182380:CDS |
| GCAAACCCTGCTAGAGGCCG+CGG | 0.535783 | 1_4:-70856662 | Msa0182380:CDS |
| GCAAGGAAACACGTCCGCAA+TGG | 0.535831 | 1_4:+70854676 | None:intergenic |
| ATCGGTAGTAGCAACAATGT+TGG | 0.537458 | 1_4:+70854398 | None:intergenic |
| CCTTTCCGCGGCCTCTAGCA+GGG | 0.538093 | 1_4:+70856657 | None:intergenic |
| CCGCTGTCGCCTGATCTTGG+TGG | 0.540431 | 1_4:-70857301 | Msa0182380:CDS |
| AGTATTTGTGAATACTTGGT+TGG | 0.540615 | 1_4:-70854463 | Msa0182380:three_prime_UTR |
| GGTGTTGCACTAATTGATCC+AGG | 0.542444 | 1_4:+70855975 | None:intergenic |
| TTTACAACATGCTGAAATGA+GGG | 0.544384 | 1_4:-70856708 | Msa0182380:CDS |
| GATTCATGACTGACTCAAGC+TGG | 0.544391 | 1_4:+70856861 | None:intergenic |
| GATGACATGGATATCTTCAA+AGG | 0.545640 | 1_4:-70856767 | Msa0182380:CDS |
| GGATTCCGCCTTAATGGTCC+CGG | 0.546381 | 1_4:-70856270 | Msa0182380:CDS |
| GAAAGAGGAAAATGGTAAGT+GGG | 0.548871 | 1_4:-70857566 | Msa0182380:CDS |
| TAGAATTTAGTGAAAAGCTC+AGG | 0.548984 | 1_4:+70857373 | None:intergenic |
| AGAGAAACACTCTCACTGAA+TGG | 0.549371 | 1_4:-70855875 | Msa0182380:CDS |
| TTTCGGTTCATGTCAAGCTA+AGG | 0.551647 | 1_4:-70855479 | Msa0182380:CDS |
| CTTGGACTTGCTGCAGAACA+CGG | 0.553602 | 1_4:-70855834 | Msa0182380:CDS |
| GTTTAACTTCCACAATGTAT+GGG | 0.566536 | 1_4:+70855398 | None:intergenic |
| ACTGCACAAGCTGTTCAAGA+TGG | 0.567111 | 1_4:+70855935 | None:intergenic |
| TAGTGAAAAGCTCAGGTGGA+AGG | 0.568307 | 1_4:+70857380 | None:intergenic |
| CATAATCCAAAAGAATCGCT+CGG | 0.569386 | 1_4:+70856015 | None:intergenic |
| CCCTGCTAGAGGCCGCGGAA+AGG | 0.571655 | 1_4:-70856657 | Msa0182380:CDS |
| GCTTCTTGCAGGATCTGGAA+AGG | 0.572169 | 1_4:-70856172 | Msa0182380:CDS |
| GATGAAATCAACAACAGTGT+TGG | 0.573789 | 1_4:-70857664 | Msa0182380:CDS |
| CGTCCTCCATTTCTCAAGAG+AGG | 0.575029 | 1_4:-70857630 | Msa0182380:CDS |
| ATTGAAGGCACAAAGGAAAG+AGG | 0.575033 | 1_4:-70857581 | Msa0182380:CDS |
| CTCTCTTGAGAAATGGAGGA+CGG | 0.575333 | 1_4:+70857631 | None:intergenic |
| GAAGTTCATCTCTAACAGGA+AGG | 0.577715 | 1_4:+70857065 | None:intergenic |
| TTGTTAGATCTTACTTCATG+CGG | 0.579234 | 1_4:-70857763 | Msa0182380:CDS |
| AATATTTGCTGATAAAGTGA+TGG | 0.579350 | 1_4:-70857233 | Msa0182380:CDS |
| GGCTGCTCCCCATCATTAAG+CGG | 0.581670 | 1_4:-70856341 | Msa0182380:CDS |
| TGCTTAATGAGGAGATAACT+GGG | 0.586765 | 1_4:+70854538 | None:intergenic |
| TTGTTACAGCAGTGAGAGAT+GGG | 0.586812 | 1_4:-70856484 | Msa0182380:CDS |
| GCGCGATTCGGGTGAATCCG+TGG | 0.589497 | 1_4:-70856319 | Msa0182380:CDS |
| GATGCTTGGGGTGGATGACA+TGG | 0.591172 | 1_4:-70856780 | Msa0182380:CDS |
| AGAGTCCAAAGAGAGTGCTC+TGG | 0.593330 | 1_4:-70855530 | Msa0182380:CDS |
| GAAGAAAAGGCTTCCAAGAG+TGG | 0.594619 | 1_4:-70857719 | Msa0182380:CDS |
| AGGAAGGGTTCGGTATATCT+CGG | 0.595173 | 1_4:+70857081 | None:intergenic |
| TCTTTCTGAGACAGAAAGCA+AGG | 0.595405 | 1_4:-70856840 | Msa0182380:CDS |
| CATCCTCTCTTGAGAAATGG+AGG | 0.595883 | 1_4:+70857627 | None:intergenic |
| GAGCTAAGAAACCAGTTCAA+AGG | 0.597173 | 1_4:-70856812 | Msa0182380:CDS |
| TAAAAGTGGCCCATACATTG+TGG | 0.597276 | 1_4:-70855407 | Msa0182380:CDS |
| AAGTTCATCTCTAACAGGAA+GGG | 0.599310 | 1_4:+70857066 | None:intergenic |
| TTGGGGTAATAACAAGTGCA+AGG | 0.603403 | 1_4:-70854712 | Msa0182380:CDS |
| TATCCAAAAGAAGAGCATGC+TGG | 0.604070 | 1_4:-70856381 | Msa0182380:CDS |
| CCACCAAGATCAGGCGACAG+CGG | 0.612409 | 1_4:+70857301 | None:intergenic |
| GCAACAGCATCAATATTCCA+CGG | 0.614265 | 1_4:+70856302 | None:intergenic |
| TGGTAAGTGGGAATTCACTT+GGG | 0.618013 | 1_4:-70857554 | Msa0182380:CDS |
| GTTCGGTATATCTCGGACGA+AGG | 0.622286 | 1_4:+70857088 | None:intergenic |
| ACATGCTGAAATGAGGGGAA+AGG | 0.622463 | 1_4:-70856702 | Msa0182380:CDS |
| AATTTAGTGAAAAGCTCAGG+TGG | 0.623435 | 1_4:+70857376 | None:intergenic |
| GGAAGTTATCAACCCTGATG+AGG | 0.625660 | 1_4:-70857212 | Msa0182380:CDS |
| AAACTTTAGAAAGCTATCTG+TGG | 0.628781 | 1_4:-70856072 | Msa0182380:CDS |
| AGCTTCCATTGAAGGCACAA+AGG | 0.630490 | 1_4:-70857588 | Msa0182380:CDS |
| AATCGCGCCGCTTAATGATG+GGG | 0.632508 | 1_4:+70856334 | None:intergenic |
| TGGGGTAATAACAAGTGCAA+GGG | 0.633008 | 1_4:-70854711 | Msa0182380:CDS |
| TTACAACATGCTGAAATGAG+GGG | 0.634606 | 1_4:-70856707 | Msa0182380:CDS |
| GGAAGCATGTAGTGAAACAA+AGG | 0.636066 | 1_4:+70857322 | None:intergenic |
| CTTCTTGCACATCCTTTCCG+CGG | 0.637125 | 1_4:+70856645 | None:intergenic |
| CCCAAACAAAATCCTCATCA+GGG | 0.640182 | 1_4:+70857200 | None:intergenic |
| TGGTGATGACAGATCAGATG+AGG | 0.641223 | 1_4:-70854741 | Msa0182380:CDS |
| GAGTATATCATTTGTAGACA+AGG | 0.642548 | 1_4:-70856443 | Msa0182380:CDS |
| GGCATCTCTATCGCCCATTG+CGG | 0.645098 | 1_4:-70854690 | Msa0182380:CDS |
| CATCTGAGGAGGAGATGCTG+GGG | 0.645178 | 1_4:-70856137 | Msa0182380:CDS |
| TTTGAGAAAGAGATTTAACA+GGG | 0.647753 | 1_4:-70857143 | Msa0182380:CDS |
| CAAATCGCAAACCCTGCTAG+AGG | 0.649493 | 1_4:-70856668 | Msa0182380:CDS |
| AATCGCTTACTATGCAATTG+CGG | 0.650771 | 1_4:-70856516 | Msa0182380:CDS |
| ACATTCTACTGCAACAGGAG+AGG | 0.651128 | 1_4:+70856981 | None:intergenic |
| CTTGTAGAGATCATCTGAGG+AGG | 0.654064 | 1_4:-70856148 | Msa0182380:CDS |
| GGATAAACGACACATTTGGA+AGG | 0.660498 | 1_4:-70856592 | Msa0182380:CDS |
| TTATATACAGAAACTACTGA+TGG | 0.662521 | 1_4:-70855562 | Msa0182380:CDS |
| CCAAAAGAAGAGCATGCTGG+TGG | 0.662803 | 1_4:-70856378 | Msa0182380:CDS |
| AGACTCCGGGACCATTAAGG+CGG | 0.664593 | 1_4:+70856265 | None:intergenic |
| ATCAGATGAGGACATGTTTG+GGG | 0.667558 | 1_4:-70854729 | Msa0182380:CDS |
| TCAAACTGTGATGCTTGGGG+TGG | 0.668780 | 1_4:-70856789 | Msa0182380:CDS |
| ACGAAGGAAAAGGACTATGG+AGG | 0.674332 | 1_4:+70857104 | None:intergenic |
| GGGCTTGTAGAGATCATCTG+AGG | 0.683476 | 1_4:-70856151 | Msa0182380:CDS |
| ATGTTGGAAGAACCATCAAG+TGG | 0.693809 | 1_4:+70857167 | None:intergenic |
| AGGTCAAACTGTGATGCTTG+GGG | 0.701625 | 1_4:-70856792 | Msa0182380:CDS |
| ATTGCTTATCAATCCAAGCG+AGG | 0.704535 | 1_4:-70856953 | Msa0182380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGTTTATTTATTTATTTC+TGG | - | chr1_4:70854610-70854629 | Msa0182380:CDS | 10.0% |
| !! | TCTAAATATAATTTCTCATA+TGG | - | chr1_4:70854744-70854763 | Msa0182380:CDS | 15.0% |
| !! | AAAACTAAAGTAAAAAGATA+AGG | + | chr1_4:70855118-70855137 | None:intergenic | 15.0% |
| !!! | TTATCTTTTTACTTTAGTTT+TGG | - | chr1_4:70855117-70855136 | Msa0182380:intron | 15.0% |
| !!! | AAATAAATTGTTTTCTTTGA+TGG | - | chr1_4:70858202-70858221 | Msa0182380:intron | 15.0% |
| !! | GATCTTTAGTTAAAATAAAA+AGG | - | chr1_4:70858651-70858670 | Msa0182380:intron | 15.0% |
| !! | GATAATGATTAATAATACTA+TGG | - | chr1_4:70858952-70858971 | Msa0182380:intron | 15.0% |
| !!! | ATTATCATTCTCTTTTTAAT+AGG | - | chr1_4:70859609-70859628 | Msa0182380:five_prime_UTR | 15.0% |
| !! | AATGAATAATAAACAGAAAG+AGG | + | chr1_4:70854530-70854549 | None:intergenic | 20.0% |
| !! | TAGTAATTAAATCTGAATTG+AGG | + | chr1_4:70854585-70854604 | None:intergenic | 20.0% |
| !! | TCAATTCAGATTTAATTACT+AGG | - | chr1_4:70854584-70854603 | Msa0182380:CDS | 20.0% |
| !!! | ATTTATTTATTTCTGGTAGT+TGG | - | chr1_4:70854617-70854636 | Msa0182380:CDS | 20.0% |
| !!! | AAATTTATCCTTTTTTTTCC+AGG | - | chr1_4:70858251-70858270 | Msa0182380:intron | 20.0% |
| !! | TTTGTATACTACTTATTGTT+GGG | - | chr1_4:70858621-70858640 | Msa0182380:intron | 20.0% |
| !! | ATTAAGAAACAGACATTTAT+CGG | + | chr1_4:70858717-70858736 | None:intergenic | 20.0% |
| !! | TTGAAGTTAATTCTAATCTT+TGG | - | chr1_4:70858979-70858998 | Msa0182380:intron | 20.0% |
| ! | TTTGTCTATAAAACCAGAAA+GGG | + | chr1_4:70854302-70854321 | None:intergenic | 25.0% |
| !! | TTTTGTCTATAAAACCAGAA+AGG | + | chr1_4:70854303-70854322 | None:intergenic | 25.0% |
| !! | GTGTGTTGTGTTATTATTAA+CGG | - | chr1_4:70854391-70854410 | Msa0182380:three_prime_UTR | 25.0% |
| ! | AACTAACATTCATTCATTCA+AGG | - | chr1_4:70854448-70854467 | Msa0182380:three_prime_UTR | 25.0% |
| ! | AAAATCAAATTAGACCCAAA+GGG | + | chr1_4:70854798-70854817 | None:intergenic | 25.0% |
| ! | CCATAAAAAAAGAAATTGCA+TGG | + | chr1_4:70854821-70854840 | None:intergenic | 25.0% |
| !!! | CCATGCAATTTCTTTTTTTA+TGG | - | chr1_4:70854818-70854837 | Msa0182380:CDS | 25.0% |
| ! | AGTAAAAAGATAAGGACTTA+GGG | + | chr1_4:70855110-70855129 | None:intergenic | 25.0% |
| ! | AAGTAAAAAGATAAGGACTT+AGG | + | chr1_4:70855111-70855130 | None:intergenic | 25.0% |
| !!! | TAGAAAAGTTGGTAGAAAAT+AGG | - | chr1_4:70855718-70855737 | Msa0182380:intron | 25.0% |
| !! | GTTTCTCTAATAGTTTTCTT+AGG | + | chr1_4:70855843-70855862 | None:intergenic | 25.0% |
| ! | AACCATTAGAAAAGATTTAG+AGG | - | chr1_4:70855860-70855879 | Msa0182380:CDS | 25.0% |
| ! | GATGTTGAAACAATCTATAT+TGG | - | chr1_4:70856430-70856449 | Msa0182380:CDS | 25.0% |
| !! | CTTTTCACTAAATTCTATCA+TGG | - | chr1_4:70856550-70856569 | Msa0182380:CDS | 25.0% |
| !! | AATATTTGCTGATAAAGTGA+TGG | - | chr1_4:70856684-70856703 | Msa0182380:CDS | 25.0% |
| ! | AATCTCTTTCTCAAAAATGT+TGG | + | chr1_4:70856769-70856788 | None:intergenic | 25.0% |
| !!! | TTTTGAGAAAGAGATTTAAC+AGG | - | chr1_4:70856773-70856792 | Msa0182380:CDS | 25.0% |
| ! | TTTGAGAAAGAGATTTAACA+GGG | - | chr1_4:70856774-70856793 | Msa0182380:CDS | 25.0% |
| ! | CTACAAATGATATACTCATA+TGG | + | chr1_4:70857471-70857490 | None:intergenic | 25.0% |
| ! | TTTGGATTATGATAGTACTA+TGG | - | chr1_4:70857914-70857933 | Msa0182380:intron | 25.0% |
| ! | TTTAAAAGAGTGAGTTCATT+TGG | + | chr1_4:70858155-70858174 | None:intergenic | 25.0% |
| ! | TTATATACAGAAACTACTGA+TGG | - | chr1_4:70858355-70858374 | Msa0182380:intron | 25.0% |
| !!! | ACTTTTTTATTACTAACCTG+AGG | + | chr1_4:70858544-70858563 | None:intergenic | 25.0% |
| ! | GTTTGTATACTACTTATTGT+TGG | - | chr1_4:70858620-70858639 | Msa0182380:intron | 25.0% |
| ! | ATAAAAAGGATACTTGAATC+TGG | - | chr1_4:70858665-70858684 | Msa0182380:intron | 25.0% |
| ! | AGTTCATGATCTTAGAAATA+AGG | + | chr1_4:70859028-70859047 | None:intergenic | 25.0% |
| ! | GAAACATATACTAATGCTAT+TGG | - | chr1_4:70859422-70859441 | Msa0182380:intron | 25.0% |
| ! | TTGTAGTATTTGTGAATACT+TGG | - | chr1_4:70859450-70859469 | Msa0182380:intron | 25.0% |
| ! | GTTGGGATTAGAAATAAAAA+TGG | + | chr1_4:70859504-70859523 | None:intergenic | 25.0% |
| ! | TTCAACAACTTAGATACAAT+CGG | + | chr1_4:70859540-70859559 | None:intergenic | 25.0% |
| !! | ATTCAAGGTTAGCTTAACTT+AGG | - | chr1_4:70854463-70854482 | Msa0182380:three_prime_UTR | 30.0% |
| ! | ATTTTGTCAATTCAACCCTT+TGG | - | chr1_4:70854780-70854799 | Msa0182380:CDS | 30.0% |
| ! | TTTTGTCAATTCAACCCTTT+GGG | - | chr1_4:70854781-70854800 | Msa0182380:CDS | 30.0% |
| GAAAATCAAATTAGACCCAA+AGG | + | chr1_4:70854799-70854818 | None:intergenic | 30.0% | |
| ATCAATGAAAACTAAGTGCA+GGG | + | chr1_4:70854903-70854922 | None:intergenic | 30.0% | |
| AATCAATGAAAACTAAGTGC+AGG | + | chr1_4:70854904-70854923 | None:intergenic | 30.0% | |
| !! | GCACTTAGTTTTCATTGATT+TGG | - | chr1_4:70854904-70854923 | Msa0182380:intron | 30.0% |
| !!! | AGTTTTCATTGATTTGGAGA+AGG | - | chr1_4:70854910-70854929 | Msa0182380:intron | 30.0% |
| TATTGTTATGGGAAAATCTC+CGG | + | chr1_4:70855068-70855087 | None:intergenic | 30.0% | |
| !!! | TTTAGTTTTGGATGTACTGA+CGG | - | chr1_4:70855129-70855148 | Msa0182380:intron | 30.0% |
| TAGAAACAAGACGGAATATA+TGG | - | chr1_4:70855288-70855307 | Msa0182380:intron | 30.0% | |
| TGGAATGTAACTTCAGTAAA+AGG | - | chr1_4:70855308-70855327 | Msa0182380:intron | 30.0% | |
| ATATCTAAACCGTGTAACTT+GGG | + | chr1_4:70855380-70855399 | None:intergenic | 30.0% | |
| TTACACGGTTTAGATATCTT+GGG | - | chr1_4:70855383-70855402 | Msa0182380:intron | 30.0% | |
| ! | TCTACCAACTTTTCTACTAT+AGG | + | chr1_4:70855714-70855733 | None:intergenic | 30.0% |
| ! | GACCTCTAAATCTTTTCTAA+TGG | + | chr1_4:70855865-70855884 | None:intergenic | 30.0% |
| GTTCTATCAAAGACCATATT+TGG | + | chr1_4:70855900-70855919 | None:intergenic | 30.0% | |
| TGGTCTTTGATAGAACATTA+TGG | - | chr1_4:70855904-70855923 | Msa0182380:CDS | 30.0% | |
| TCTTTGATAGAACATTATGG+CGG | - | chr1_4:70855907-70855926 | Msa0182380:CDS | 30.0% | |
| !!! | ATGCTAGTTTGCTAGTTTTT+TGG | - | chr1_4:70856013-70856032 | Msa0182380:CDS | 30.0% |
| !!! | AGTTGTATTTTTGCTGTTGT+AGG | - | chr1_4:70856079-70856098 | Msa0182380:CDS | 30.0% |
| TGAAGTAAGATCTAACAAGT+TGG | + | chr1_4:70856152-70856171 | None:intergenic | 30.0% | |
| TTGTTAGATCTTACTTCATG+CGG | - | chr1_4:70856154-70856173 | Msa0182380:CDS | 30.0% | |
| TAGAATTTAGTGAAAAGCTC+AGG | + | chr1_4:70856547-70856566 | None:intergenic | 30.0% | |
| TTCTGAATTCTGACCTTATA+GGG | - | chr1_4:70856884-70856903 | Msa0182380:CDS | 30.0% | |
| ! | AGGAATCAGCTTAAAACTTT+TGG | - | chr1_4:70857170-70857189 | Msa0182380:CDS | 30.0% |
| ! | TTTTACAACATGCTGAAATG+AGG | - | chr1_4:70857208-70857227 | Msa0182380:CDS | 30.0% |
| TTTACAACATGCTGAAATGA+GGG | - | chr1_4:70857209-70857228 | Msa0182380:CDS | 30.0% | |
| AAAAGGATAAACGACACATT+TGG | - | chr1_4:70857321-70857340 | Msa0182380:CDS | 30.0% | |
| GAGTATATCATTTGTAGACA+AGG | - | chr1_4:70857474-70857493 | Msa0182380:CDS | 30.0% | |
| ! | GAGAAGATAGATGAGATTTT+AGG | - | chr1_4:70857501-70857520 | Msa0182380:CDS | 30.0% |
| !! | CAGATAGCTTTCTAAAGTTT+GGG | + | chr1_4:70857845-70857864 | None:intergenic | 30.0% |
| !! | ACAGATAGCTTTCTAAAGTT+TGG | + | chr1_4:70857846-70857865 | None:intergenic | 30.0% |
| ! | AAACTTTAGAAAGCTATCTG+TGG | - | chr1_4:70857845-70857864 | Msa0182380:intron | 30.0% |
| ACATTGTTTCAGCTTATAAG+AGG | - | chr1_4:70857871-70857890 | Msa0182380:intron | 30.0% | |
| CACAATGAAAACACAATTCT+TGG | + | chr1_4:70858012-70858031 | None:intergenic | 30.0% | |
| ! | AATTGTGTTTTCATTGTGAG+TGG | - | chr1_4:70858014-70858033 | Msa0182380:intron | 30.0% |
| ! | TTTTCTTCTTGTGAAAAGCT+TGG | - | chr1_4:70858065-70858084 | Msa0182380:intron | 30.0% |
| TTATGCATGAAAGAATGTTG+TGG | - | chr1_4:70858176-70858195 | Msa0182380:intron | 30.0% | |
| TCTGTATATAACTGCATAAC+TGG | + | chr1_4:70858346-70858365 | None:intergenic | 30.0% | |
| ! | GTTTAACTTCCACAATGTAT+GGG | + | chr1_4:70858522-70858541 | None:intergenic | 30.0% |
| TCGTAGATCAAAGAAAATAG+CGG | + | chr1_4:70858902-70858921 | None:intergenic | 30.0% | |
| ! | TTGGTCATGAATTCTTTTGA+AGG | - | chr1_4:70858998-70859017 | Msa0182380:intron | 30.0% |
| ! | TGGTCATGAATTCTTTTGAA+GGG | - | chr1_4:70858999-70859018 | Msa0182380:intron | 30.0% |
| TCATGATCTTAGAAATAAGG+AGG | + | chr1_4:70859025-70859044 | None:intergenic | 30.0% | |
| TCTGATAACAATGCAACAAA+AGG | - | chr1_4:70859125-70859144 | Msa0182380:intron | 30.0% | |
| CTGATAACAATGCAACAAAA+GGG | - | chr1_4:70859126-70859145 | Msa0182380:intron | 30.0% | |
| !! | AAGTAATATTTGGCTTTGCT+TGG | + | chr1_4:70859282-70859301 | None:intergenic | 30.0% |
| AAGCAAAGCCAAATATTACT+TGG | - | chr1_4:70859281-70859300 | Msa0182380:intron | 30.0% | |
| TGTGTCTTCCAAGTAATATT+TGG | + | chr1_4:70859292-70859311 | None:intergenic | 30.0% | |
| ! | TTAGAAAAGCTTGCTTAATG+AGG | + | chr1_4:70859393-70859412 | None:intergenic | 30.0% |
| ! | CAAGCTTTTCTAATCTATGT+AGG | - | chr1_4:70859400-70859419 | Msa0182380:intron | 30.0% |
| AGTATTTGTGAATACTTGGT+TGG | - | chr1_4:70859454-70859473 | Msa0182380:intron | 30.0% | |
| GATTGTATCTAAGTTGTTGA+AGG | - | chr1_4:70859539-70859558 | Msa0182380:five_prime_UTR | 30.0% | |
| TAACGGAGAAGAAGAATCTT+TGG | - | chr1_4:70854408-70854427 | Msa0182380:three_prime_UTR | 35.0% | |
| CTGAATTGAGGCAATGTTTA+AGG | + | chr1_4:70854573-70854592 | None:intergenic | 35.0% | |
| !! | ATCCTGGATAGCTCTAATAT+AGG | + | chr1_4:70854999-70855018 | None:intergenic | 35.0% |
| ! | GGAGATTTTCCCATAACAAT+AGG | - | chr1_4:70855067-70855086 | Msa0182380:intron | 35.0% |
| ! | TCTGCAAAAAGCATACATCT+CGG | + | chr1_4:70855175-70855194 | None:intergenic | 35.0% |
| AACTTCAGTAAAAGGAGAAG+TGG | - | chr1_4:70855316-70855335 | Msa0182380:intron | 35.0% | |
| ACTTCAGTAAAAGGAGAAGT+GGG | - | chr1_4:70855317-70855336 | Msa0182380:intron | 35.0% | |
| ATATCATACCCCAAGTTACA+CGG | - | chr1_4:70855368-70855387 | Msa0182380:intron | 35.0% | |
| TATCTAAACCGTGTAACTTG+GGG | + | chr1_4:70855379-70855398 | None:intergenic | 35.0% | |
| GATATCTAAACCGTGTAACT+TGG | + | chr1_4:70855381-70855400 | None:intergenic | 35.0% | |
| GTTACACGGTTTAGATATCT+TGG | - | chr1_4:70855382-70855401 | Msa0182380:intron | 35.0% | |
| !! | TTCTCCGTCATTTTGTACTA+TGG | + | chr1_4:70855410-70855429 | None:intergenic | 35.0% |
| TACATCATCGTATTCAAGCT+GGG | - | chr1_4:70855443-70855462 | Msa0182380:CDS | 35.0% | |
| ! | AAAGTACCACTTAAGCTGAA+AGG | - | chr1_4:70855508-70855527 | Msa0182380:CDS | 35.0% |
| AACTTTCCTTTCAGCTTAAG+TGG | + | chr1_4:70855517-70855536 | None:intergenic | 35.0% | |
| AGCTGAAAGGAAAGTTCTAT+CGG | - | chr1_4:70855521-70855540 | Msa0182380:CDS | 35.0% | |
| AGACTAGACATGATAGGATT+AGG | - | chr1_4:70855656-70855675 | Msa0182380:intron | 35.0% | |
| AGCACCTATAGTAGAAAAGT+TGG | - | chr1_4:70855707-70855726 | Msa0182380:intron | 35.0% | |
| TGGTAGAAAATAGGCTTAGA+TGG | - | chr1_4:70855727-70855746 | Msa0182380:intron | 35.0% | |
| GAAAATAGGCTTAGATGGTT+TGG | - | chr1_4:70855732-70855751 | Msa0182380:intron | 35.0% | |
| TTGATCTACTCTTCTTACCA+CGG | + | chr1_4:70855784-70855803 | None:intergenic | 35.0% | |
| GGTAAGAAGAGTAGATCAAA+TGG | - | chr1_4:70855785-70855804 | Msa0182380:intron | 35.0% | |
| AAGAAGAGTAGATCAAATGG+AGG | - | chr1_4:70855788-70855807 | Msa0182380:intron | 35.0% | |
| AGATTTAGAGGTCAATGAGT+TGG | - | chr1_4:70855872-70855891 | Msa0182380:CDS | 35.0% | |
| ! | CAATGAGTTGGATCCAAATA+TGG | - | chr1_4:70855884-70855903 | Msa0182380:CDS | 35.0% |
| GATGAAATCAACAACAGTGT+TGG | - | chr1_4:70856253-70856272 | Msa0182380:CDS | 35.0% | |
| GAAAGAGGAAAATGGTAAGT+GGG | - | chr1_4:70856351-70856370 | Msa0182380:CDS | 35.0% | |
| ! | CTTCTTTTACAGCTGAAAGA+TGG | - | chr1_4:70856397-70856416 | Msa0182380:CDS | 35.0% |
| AATTTAGTGAAAAGCTCAGG+TGG | + | chr1_4:70856544-70856563 | None:intergenic | 35.0% | |
| GTTTCTGTAAGCAACATCTA+TGG | - | chr1_4:70856572-70856591 | Msa0182380:CDS | 35.0% | |
| AAGTTCATCTCTAACAGGAA+GGG | + | chr1_4:70856854-70856873 | None:intergenic | 35.0% | |
| CTAAGAAGTTCATCTCTAAC+AGG | + | chr1_4:70856859-70856878 | None:intergenic | 35.0% | |
| CTTCTGAATTCTGACCTTAT+AGG | - | chr1_4:70856883-70856902 | Msa0182380:CDS | 35.0% | |
| ! | CGAAAGTATGAAACCCTATA+AGG | + | chr1_4:70856900-70856919 | None:intergenic | 35.0% |
| TTCATACTTTCGACTATGCT+AGG | - | chr1_4:70856908-70856927 | Msa0182380:CDS | 35.0% | |
| TACATAGGTCTTGAGTACTA+TGG | - | chr1_4:70856988-70857007 | Msa0182380:CDS | 35.0% | |
| AGCATTAAGATTCTTCCTGT+TGG | - | chr1_4:70857021-70857040 | Msa0182380:CDS | 35.0% | |
| CTTCCTGTTGGTATTCATAT+AGG | - | chr1_4:70857033-70857052 | Msa0182380:CDS | 35.0% | |
| GATGACATGGATATCTTCAA+AGG | - | chr1_4:70857150-70857169 | Msa0182380:CDS | 35.0% | |
| ! | CAGCTTAAAACTTTTGGCAA+TGG | - | chr1_4:70857176-70857195 | Msa0182380:CDS | 35.0% |
| TTACAACATGCTGAAATGAG+GGG | - | chr1_4:70857210-70857229 | Msa0182380:CDS | 35.0% | |
| AAACTTATGCAACCGTGAAA+AGG | - | chr1_4:70857304-70857323 | Msa0182380:CDS | 35.0% | |
| !!! | TGTGTCGTTTATCCTTTTCA+CGG | + | chr1_4:70857319-70857338 | None:intergenic | 35.0% |
| ! | GTTGTATCGATCAAGATTAC+AGG | + | chr1_4:70857363-70857382 | None:intergenic | 35.0% |
| AATCGCTTACTATGCAATTG+CGG | - | chr1_4:70857401-70857420 | Msa0182380:CDS | 35.0% | |
| ! | AGGATTTCGAGTAATAGCTT+TGG | - | chr1_4:70857818-70857837 | Msa0182380:five_prime_UTR | 35.0% |
| CATAATCCAAAAGAATCGCT+CGG | + | chr1_4:70857905-70857924 | None:intergenic | 35.0% | |
| ! | TGTTTTCATTGTGAGTGGAA+AGG | - | chr1_4:70858019-70858038 | Msa0182380:intron | 35.0% |
| GAGTGAGTTCATTTGGTATA+AGG | + | chr1_4:70858148-70858167 | None:intergenic | 35.0% | |
| TTCTTTGATGGAGATTGCTT+AGG | - | chr1_4:70858214-70858233 | Msa0182380:intron | 35.0% | |
| ATCTGTTTCCAGTCAAAATC+AGG | + | chr1_4:70858316-70858335 | None:intergenic | 35.0% | |
| TAAGGAACTTCTTGATCATC+TGG | - | chr1_4:70858456-70858475 | Msa0182380:intron | 35.0% | |
| ! | GGTTTAACTTCCACAATGTA+TGG | + | chr1_4:70858523-70858542 | None:intergenic | 35.0% |
| ! | CACTTGACATTTTTGTTGCA+GGG | - | chr1_4:70859072-70859091 | Msa0182380:intron | 35.0% |
| CCAATGCATAGAACAAAATC+TGG | + | chr1_4:70859159-70859178 | None:intergenic | 35.0% | |
| ! | CCAGATTTTGTTCTATGCAT+TGG | - | chr1_4:70859156-70859175 | Msa0182380:intron | 35.0% |
| !! | TTTGCTTGGTTTTTGACCAA+CGG | + | chr1_4:70859268-70859287 | None:intergenic | 35.0% |
| TGCTTAATGAGGAGATAACT+GGG | + | chr1_4:70859382-70859401 | None:intergenic | 35.0% | |
| TTGCTTAATGAGGAGATAAC+TGG | + | chr1_4:70859383-70859402 | None:intergenic | 35.0% | |
| ! | CTTGGTTGGTTATCTTGTAT+TGG | - | chr1_4:70859468-70859487 | Msa0182380:intron | 35.0% |
| ! | GAGTACCTAGAGAGATTTTG+TGG | - | chr1_4:70854942-70854961 | Msa0182380:intron | 40.0% |
| GCTTTCCACAAAATCTCTCT+AGG | + | chr1_4:70854950-70854969 | None:intergenic | 40.0% | |
| TGCCTATATTAGAGCTATCC+AGG | - | chr1_4:70854994-70855013 | Msa0182380:intron | 40.0% | |
| AGCTATCCAGGATATGTATG+AGG | - | chr1_4:70855006-70855025 | Msa0182380:intron | 40.0% | |
| GCTATCCAGGATATGTATGA+GGG | - | chr1_4:70855007-70855026 | Msa0182380:intron | 40.0% | |
| CTATCCAGGATATGTATGAG+GGG | - | chr1_4:70855008-70855027 | Msa0182380:intron | 40.0% | |
| TATCCAGGATATGTATGAGG+GGG | - | chr1_4:70855009-70855028 | Msa0182380:intron | 40.0% | |
| TGGTGCAGTCCTATTGTTAT+GGG | + | chr1_4:70855079-70855098 | None:intergenic | 40.0% | |
| TTGGTGCAGTCCTATTGTTA+TGG | + | chr1_4:70855080-70855099 | None:intergenic | 40.0% | |
| ATAACAATAGGACTGCACCA+AGG | - | chr1_4:70855079-70855098 | Msa0182380:intron | 40.0% | |
| TAACAATAGGACTGCACCAA+GGG | - | chr1_4:70855080-70855099 | Msa0182380:intron | 40.0% | |
| !! | ATTCCGTCTTGTTTCTACTC+AGG | + | chr1_4:70855285-70855304 | None:intergenic | 40.0% |
| TCTACCTTAGAGGTGAAAGT+TGG | - | chr1_4:70855340-70855359 | Msa0182380:intron | 40.0% | |
| ATCTCCAACTTTCACCTCTA+AGG | + | chr1_4:70855347-70855366 | None:intergenic | 40.0% | |
| GGGTCCATAGTACAAAATGA+CGG | - | chr1_4:70855403-70855422 | Msa0182380:CDS | 40.0% | |
| GTACATCATCGTATTCAAGC+TGG | - | chr1_4:70855442-70855461 | Msa0182380:CDS | 40.0% | |
| GTGGTAAGACTAGACATGAT+AGG | - | chr1_4:70855650-70855669 | Msa0182380:intron | 40.0% | |
| TGACATCATTAGAGAGAGAG+TGG | - | chr1_4:70855681-70855700 | Msa0182380:intron | 40.0% | |
| GACATCATTAGAGAGAGAGT+GGG | - | chr1_4:70855682-70855701 | Msa0182380:intron | 40.0% | |
| ACATCATTAGAGAGAGAGTG+GGG | - | chr1_4:70855683-70855702 | Msa0182380:intron | 40.0% | |
| AGTCAGGTTAAAAGAGGTAG+AGG | - | chr1_4:70855813-70855832 | Msa0182380:intron | 40.0% | |
| GATCATCCTCTCTTGAGAAA+TGG | + | chr1_4:70856296-70856315 | None:intergenic | 40.0% | |
| CAAGAGAGGATGATCATTGT+TGG | - | chr1_4:70856301-70856320 | Msa0182380:CDS | 40.0% | |
| TCTTTCCTTTGTGCCTTCAA+TGG | + | chr1_4:70856337-70856356 | None:intergenic | 40.0% | |
| ! | ATTGAAGGCACAAAGGAAAG+AGG | - | chr1_4:70856336-70856355 | Msa0182380:CDS | 40.0% |
| GCACAAAGGAAAGAGGAAAA+TGG | - | chr1_4:70856343-70856362 | Msa0182380:CDS | 40.0% | |
| GGAAAGAGGAAAATGGTAAG+TGG | - | chr1_4:70856350-70856369 | Msa0182380:CDS | 40.0% | |
| ATGGTAAGTGGGAATTCACT+TGG | - | chr1_4:70856362-70856381 | Msa0182380:CDS | 40.0% | |
| TGGTAAGTGGGAATTCACTT+GGG | - | chr1_4:70856363-70856382 | Msa0182380:CDS | 40.0% | |
| TTACAGCTGAAAGATGGTCT+TGG | - | chr1_4:70856403-70856422 | Msa0182380:CDS | 40.0% | |
| GCAACATCATCTTGCTCAAT+TGG | + | chr1_4:70856478-70856497 | None:intergenic | 40.0% | |
| ! | GGAAGCATGTAGTGAAACAA+AGG | + | chr1_4:70856598-70856617 | None:intergenic | 40.0% |
| !! | GTCGATTTGATCGATCTCTT+TGG | - | chr1_4:70856638-70856657 | Msa0182380:CDS | 40.0% |
| ATTTGATCGATCTCTTTGGC+AGG | - | chr1_4:70856642-70856661 | Msa0182380:CDS | 40.0% | |
| ! | ACCCTGATGAGGATTTTGTT+TGG | - | chr1_4:70856716-70856735 | Msa0182380:CDS | 40.0% |
| CCCAAACAAAATCCTCATCA+GGG | + | chr1_4:70856720-70856739 | None:intergenic | 40.0% | |
| !! | CCCTGATGAGGATTTTGTTT+GGG | - | chr1_4:70856717-70856736 | Msa0182380:CDS | 40.0% |
| ACCCAAACAAAATCCTCATC+AGG | + | chr1_4:70856721-70856740 | None:intergenic | 40.0% | |
| ATGTTGGAAGAACCATCAAG+TGG | + | chr1_4:70856753-70856772 | None:intergenic | 40.0% | |
| GAAAGAGATTTAACAGGGCA+AGG | - | chr1_4:70856779-70856798 | Msa0182380:CDS | 40.0% | |
| TATATCTCGGACGAAGGAAA+AGG | + | chr1_4:70856826-70856845 | None:intergenic | 40.0% | |
| GAAGTTCATCTCTAACAGGA+AGG | + | chr1_4:70856855-70856874 | None:intergenic | 40.0% | |
| TCCTGTTGCAGTAGAATGTT+GGG | - | chr1_4:70856940-70856959 | Msa0182380:CDS | 40.0% | |
| ATTGCTTATCAATCCAAGCG+AGG | - | chr1_4:70856964-70856983 | Msa0182380:CDS | 40.0% | |
| TGGCCTATATGAATACCAAC+AGG | + | chr1_4:70857039-70857058 | None:intergenic | 40.0% | |
| !! | TCTTTCTGAGACAGAAAGCA+AGG | - | chr1_4:70857077-70857096 | Msa0182380:CDS | 40.0% |
| GAGCTAAGAAACCAGTTCAA+AGG | - | chr1_4:70857105-70857124 | Msa0182380:CDS | 40.0% | |
| TCACAGTTTGACCTTTGAAC+TGG | + | chr1_4:70857119-70857138 | None:intergenic | 40.0% | |
| AAAGGTCAAACTGTGATGCT+TGG | - | chr1_4:70857123-70857142 | Msa0182380:CDS | 40.0% | |
| AAGGTCAAACTGTGATGCTT+GGG | - | chr1_4:70857124-70857143 | Msa0182380:CDS | 40.0% | |
| GGATAAACGACACATTTGGA+AGG | - | chr1_4:70857325-70857344 | Msa0182380:CDS | 40.0% | |
| AAGATTACAGGTGTGTATCC+AGG | + | chr1_4:70857351-70857370 | None:intergenic | 40.0% | |
| TTGTTACAGCAGTGAGAGAT+GGG | - | chr1_4:70857433-70857452 | Msa0182380:CDS | 40.0% | |
| ! | TATCCAAAAGAAGAGCATGC+TGG | - | chr1_4:70857536-70857555 | Msa0182380:CDS | 40.0% |
| GCAACAGCATCAATATTCCA+CGG | + | chr1_4:70857618-70857637 | None:intergenic | 40.0% | |
| !! | GCATATGTTTTTCAGACTCC+GGG | + | chr1_4:70857668-70857687 | None:intergenic | 40.0% |
| !! | CGCATATGTTTTTCAGACTC+CGG | + | chr1_4:70857669-70857688 | None:intergenic | 40.0% |
| !! | TGCGTCATGAGAAGCATTAT+AGG | - | chr1_4:70857685-70857704 | Msa0182380:CDS | 40.0% |
| TACGCACGATGTTGCATATT+GGG | - | chr1_4:70857716-70857735 | Msa0182380:CDS | 40.0% | |
| !!! | TGGGGAATTGGTTTTGGTTT+AGG | - | chr1_4:70857798-70857817 | Msa0182380:exon | 40.0% |
| AGAGAAACACTCTCACTGAA+TGG | - | chr1_4:70858042-70858061 | Msa0182380:intron | 40.0% | |
| ! | GGTATAAGGAGTATGACACA+AGG | + | chr1_4:70858134-70858153 | None:intergenic | 40.0% |
| ! | TGGCTTGTCCTGGAAAAAAA+AGG | + | chr1_4:70858262-70858281 | None:intergenic | 40.0% |
| !! | TTTCTGTGCCTGATTTTGAC+TGG | - | chr1_4:70858305-70858324 | Msa0182380:intron | 40.0% |
| GAATTTGCAGACCGAGATTT+CGG | - | chr1_4:70858421-70858440 | Msa0182380:intron | 40.0% | |
| CTTGACATGAACCGAAATCT+CGG | + | chr1_4:70858435-70858454 | None:intergenic | 40.0% | |
| TTTCGGTTCATGTCAAGCTA+AGG | - | chr1_4:70858438-70858457 | Msa0182380:intron | 40.0% | |
| GAGCCTGTTTCAGTTAAAAG+TGG | - | chr1_4:70858496-70858515 | Msa0182380:intron | 40.0% | |
| TAAAAGTGGCCCATACATTG+TGG | - | chr1_4:70858510-70858529 | Msa0182380:intron | 40.0% | |
| CATTGTGGAAGTTAAACCTC+AGG | - | chr1_4:70858525-70858544 | Msa0182380:intron | 40.0% | |
| TGATCTACGATTGACAACAC+TGG | - | chr1_4:70858912-70858931 | Msa0182380:intron | 40.0% | |
| CCTGCAACAAAAATGTCAAG+TGG | + | chr1_4:70859074-70859093 | None:intergenic | 40.0% | |
| ! | CCACTTGACATTTTTGTTGC+AGG | - | chr1_4:70859071-70859090 | Msa0182380:intron | 40.0% |
| AGATCAGATGAGGACATGTT+TGG | - | chr1_4:70859186-70859205 | Msa0182380:intron | 40.0% | |
| GATCAGATGAGGACATGTTT+GGG | - | chr1_4:70859187-70859206 | Msa0182380:intron | 40.0% | |
| ATCAGATGAGGACATGTTTG+GGG | - | chr1_4:70859188-70859207 | Msa0182380:intron | 40.0% | |
| TTGGGGTAATAACAAGTGCA+AGG | - | chr1_4:70859205-70859224 | Msa0182380:intron | 40.0% | |
| TGGGGTAATAACAAGTGCAA+GGG | - | chr1_4:70859206-70859225 | Msa0182380:intron | 40.0% | |
| ! | AAGACACAAGCGAGATTTTG+AGG | - | chr1_4:70859304-70859323 | Msa0182380:intron | 40.0% |
| !! | GAGATTTTGAGGATGTTGCA+AGG | - | chr1_4:70859315-70859334 | Msa0182380:intron | 40.0% |
| ! | AGCAGTTTGTTCAGAAGCAT+TGG | + | chr1_4:70859346-70859365 | None:intergenic | 40.0% |
| TCGGTAGTAGCAACAATGTT+GGG | + | chr1_4:70859521-70859540 | None:intergenic | 40.0% | |
| ATCGGTAGTAGCAACAATGT+TGG | + | chr1_4:70859522-70859541 | None:intergenic | 40.0% | |
| ! | AGAGATTTTGTGGAAAGCCC+TGG | - | chr1_4:70854952-70854971 | Msa0182380:intron | 45.0% |
| !! | TACATCTCGGTGCTAACTCT+TGG | + | chr1_4:70855162-70855181 | None:intergenic | 45.0% |
| ! | GCAGATGATGTAGTCTTGCT+TGG | - | chr1_4:70855190-70855209 | Msa0182380:intron | 45.0% |
| ATCATCGTATTCAAGCTGGG+TGG | - | chr1_4:70855446-70855465 | Msa0182380:CDS | 45.0% | |
| TTCAAGCTGGGTGGTTGAAA+TGG | - | chr1_4:70855455-70855474 | Msa0182380:CDS | 45.0% | |
| TTGAAATGGAGAAGAGCCTC+AGG | - | chr1_4:70855469-70855488 | Msa0182380:CDS | 45.0% | |
| CTTATCGCACAAAACACCTG+AGG | + | chr1_4:70855488-70855507 | None:intergenic | 45.0% | |
| ACCGGCAATGTTGTATGGTA+CGG | - | chr1_4:70855555-70855574 | Msa0182380:CDS | 45.0% | |
| TCCGTACCATACAACATTGC+CGG | + | chr1_4:70855559-70855578 | None:intergenic | 45.0% | |
| TGTTGTATGGTACGGAGTGT+TGG | - | chr1_4:70855563-70855582 | Msa0182380:CDS | 45.0% | |
| ! | GTTGTATGGTACGGAGTGTT+GGG | - | chr1_4:70855564-70855583 | Msa0182380:CDS | 45.0% |
| CGCTTACTTTACTCTCGTGT+TGG | + | chr1_4:70855600-70855619 | None:intergenic | 45.0% | |
| CGAGAGTAAAGTAAGCGTAG+CGG | - | chr1_4:70855603-70855622 | Msa0182380:CDS | 45.0% | |
| AGATCAAATGGAGGAGAGTC+AGG | - | chr1_4:70855797-70855816 | Msa0182380:intron | 45.0% | |
| GAGGAGAGTCAGGTTAAAAG+AGG | - | chr1_4:70855807-70855826 | Msa0182380:intron | 45.0% | |
| AACGCCTTATCCCACTAAGT+GGG | + | chr1_4:70855954-70855973 | None:intergenic | 45.0% | |
| GAGTGAGTGAGTGAGCAAAA+TGG | - | chr1_4:70856111-70856130 | Msa0182380:CDS | 45.0% | |
| GAGTGAGCAAAATGGCTTCA+AGG | - | chr1_4:70856119-70856138 | Msa0182380:CDS | 45.0% | |
| TTCTTCTCACGACCGAAAGA+CGG | + | chr1_4:70856184-70856203 | None:intergenic | 45.0% | |
| CTTTCGGTCGTGAGAAGAAA+AGG | - | chr1_4:70856185-70856204 | Msa0182380:CDS | 45.0% | |
| GAAGAAAAGGCTTCCAAGAG+TGG | - | chr1_4:70856198-70856217 | Msa0182380:CDS | 45.0% | |
| CTCTCTTGAGAAATGGAGGA+CGG | + | chr1_4:70856289-70856308 | None:intergenic | 45.0% | |
| CATCCTCTCTTGAGAAATGG+AGG | + | chr1_4:70856293-70856312 | None:intergenic | 45.0% | |
| TGGTAACCAGCTTCCATTGA+AGG | - | chr1_4:70856321-70856340 | Msa0182380:CDS | 45.0% | |
| TTTGTGCCTTCAATGGAAGC+TGG | + | chr1_4:70856330-70856349 | None:intergenic | 45.0% | |
| ! | AGCTTCCATTGAAGGCACAA+AGG | - | chr1_4:70856329-70856348 | Msa0182380:CDS | 45.0% |
| TAGTGAAAAGCTCAGGTGGA+AGG | + | chr1_4:70856540-70856559 | None:intergenic | 45.0% | |
| TCAAATCGACCACCAAGATC+AGG | + | chr1_4:70856628-70856647 | None:intergenic | 45.0% | |
| GGAAGTTATCAACCCTGATG+AGG | - | chr1_4:70856705-70856724 | Msa0182380:CDS | 45.0% | |
| GGTTCATGACTACCACTTGA+TGG | - | chr1_4:70856738-70856757 | Msa0182380:CDS | 45.0% | |
| AGATTTAACAGGGCAAGGCT+TGG | - | chr1_4:70856784-70856803 | Msa0182380:CDS | 45.0% | |
| ACGAAGGAAAAGGACTATGG+AGG | + | chr1_4:70856816-70856835 | None:intergenic | 45.0% | |
| ! | AGGAAGGGTTCGGTATATCT+CGG | + | chr1_4:70856839-70856858 | None:intergenic | 45.0% |
| CATCTCTAACAGGAAGGGTT+CGG | + | chr1_4:70856849-70856868 | None:intergenic | 45.0% | |
| ACATTCTACTGCAACAGGAG+AGG | + | chr1_4:70856939-70856958 | None:intergenic | 45.0% | |
| CTCCTGTTGCAGTAGAATGT+TGG | - | chr1_4:70856939-70856958 | Msa0182380:CDS | 45.0% | |
| TCCCAACATTCTACTGCAAC+AGG | + | chr1_4:70856944-70856963 | None:intergenic | 45.0% | |
| ! | GATTCATGACTGACTCAAGC+TGG | + | chr1_4:70857059-70857078 | None:intergenic | 45.0% |
| AGGTCAAACTGTGATGCTTG+GGG | - | chr1_4:70857125-70857144 | Msa0182380:CDS | 45.0% | |
| ACATGCTGAAATGAGGGGAA+AGG | - | chr1_4:70857215-70857234 | Msa0182380:CDS | 45.0% | |
| AATGAGGGGAAAGGTTGTTC+TGG | - | chr1_4:70857224-70857243 | Msa0182380:CDS | 45.0% | |
| TCGATACAACACTCCAGAGT+TGG | - | chr1_4:70857373-70857392 | Msa0182380:CDS | 45.0% | |
| CGATACAACACTCCAGAGTT+GGG | - | chr1_4:70857374-70857393 | Msa0182380:CDS | 45.0% | |
| CTTGTTACAGCAGTGAGAGA+TGG | - | chr1_4:70857432-70857451 | Msa0182380:CDS | 45.0% | |
| ! | CTGGTGGTGTCTGAATTCAT+TGG | - | chr1_4:70857555-70857574 | Msa0182380:CDS | 45.0% |
| TGATGCTGTTGCTGAAGCTA+TGG | - | chr1_4:70857626-70857645 | Msa0182380:CDS | 45.0% | |
| AGCTATGGATTCCGCCTTAA+TGG | - | chr1_4:70857641-70857660 | Msa0182380:CDS | 45.0% | |
| GTACGCACGATGTTGCATAT+TGG | - | chr1_4:70857715-70857734 | Msa0182380:CDS | 45.0% | |
| CTTCTTGCAGGATCTGGAAA+GGG | - | chr1_4:70857746-70857765 | Msa0182380:CDS | 45.0% | |
| CTTGTAGAGATCATCTGAGG+AGG | - | chr1_4:70857769-70857788 | Msa0182380:CDS | 45.0% | |
| !! | AGATGCTGGGGAATTGGTTT+TGG | - | chr1_4:70857792-70857811 | Msa0182380:exon | 45.0% |
| ! | GGTGTTGCACTAATTGATCC+AGG | + | chr1_4:70857945-70857964 | None:intergenic | 45.0% |
| ATGGAAACAGCTTCAGCACT+AGG | + | chr1_4:70857966-70857985 | None:intergenic | 45.0% | |
| ACTGCACAAGCTGTTCAAGA+TGG | + | chr1_4:70857985-70858004 | None:intergenic | 45.0% | |
| !!! | GGGCCACTTTTAACTGAAAC+AGG | + | chr1_4:70858502-70858521 | None:intergenic | 45.0% |
| TGCTAGCGTAACATGGTTCT+AGG | + | chr1_4:70858691-70858710 | None:intergenic | 45.0% | |
| AGAACCATGTTACGCTAGCA+TGG | - | chr1_4:70858691-70858710 | Msa0182380:intron | 45.0% | |
| ATAGTAGCGCTACAACGTAG+TGG | - | chr1_4:70858763-70858782 | Msa0182380:intron | 45.0% | |
| !! | CAACACTGGCTTGAAGTAGT+TGG | - | chr1_4:70858926-70858945 | Msa0182380:intron | 45.0% |
| TTTGTTGCAGGGTGTGAGTA+AGG | - | chr1_4:70859083-70859102 | Msa0182380:intron | 45.0% | |
| TTGTTGCAGGGTGTGAGTAA+GGG | - | chr1_4:70859084-70859103 | Msa0182380:intron | 45.0% | |
| ! | TGGTGATGACAGATCAGATG+AGG | - | chr1_4:70859176-70859195 | Msa0182380:intron | 45.0% |
| TGGAAAGCCCTGGAGAAGAA+AGG | - | chr1_4:70854962-70854981 | Msa0182380:intron | 50.0% | |
| GGAAAGCCCTGGAGAAGAAA+GGG | - | chr1_4:70854963-70854982 | Msa0182380:intron | 50.0% | |
| GAAAGCCCTGGAGAAGAAAG+GGG | - | chr1_4:70854964-70854983 | Msa0182380:intron | 50.0% | |
| AAGCCCCCTCATACATATCC+TGG | + | chr1_4:70855015-70855034 | None:intergenic | 50.0% | |
| AAGGACTTAGGGTTGACCCT+TGG | + | chr1_4:70855099-70855118 | None:intergenic | 50.0% | |
| ! | TAGTCTTGCTTGGTGAGTCG+AGG | - | chr1_4:70855200-70855219 | Msa0182380:intron | 50.0% |
| ! | AGTCTTGCTTGGTGAGTCGA+GGG | - | chr1_4:70855201-70855220 | Msa0182380:intron | 50.0% |
| GAGTCGAGGGAGGAGTTAAA+CGG | - | chr1_4:70855214-70855233 | Msa0182380:intron | 50.0% | |
| AGTCGAGGGAGGAGTTAAAC+GGG | - | chr1_4:70855215-70855234 | Msa0182380:intron | 50.0% | |
| TAAACGGGAGGCTAGAGACT+TGG | - | chr1_4:70855230-70855249 | Msa0182380:intron | 50.0% | |
| ! | AGGCAAGCCTTAGAAGCGTA+CGG | - | chr1_4:70855253-70855272 | Msa0182380:intron | 50.0% |
| !! | CCGTCTTGTTTCTACTCAGG+CGG | + | chr1_4:70855282-70855301 | None:intergenic | 50.0% |
| CCGCCTGAGTAGAAACAAGA+CGG | - | chr1_4:70855279-70855298 | Msa0182380:intron | 50.0% | |
| GAGAAGTGGGTCTACCTTAG+AGG | - | chr1_4:70855330-70855349 | Msa0182380:intron | 50.0% | |
| GTCAGACCGGCAATGTTGTA+TGG | - | chr1_4:70855550-70855569 | Msa0182380:CDS | 50.0% | |
| ! | AAGTAAGCGTAGCGGAGATG+AGG | - | chr1_4:70855611-70855630 | Msa0182380:CDS | 50.0% |
| AGGATGTTGCGTTGGATGAG+TGG | - | chr1_4:70855631-70855650 | Msa0182380:CDS | 50.0% | |
| TCTTCTTACCACGGCGTCTA+CGG | + | chr1_4:70855775-70855794 | None:intergenic | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr1_4:70855949-70855968 | None:intergenic | 50.0% | |
| ACGCCTTATCCCACTAAGTG+GGG | + | chr1_4:70855953-70855972 | None:intergenic | 50.0% | |
| CAACGCCTTATCCCACTAAG+TGG | + | chr1_4:70855955-70855974 | None:intergenic | 50.0% | |
| CGTCCTCCATTTCTCAAGAG+AGG | - | chr1_4:70856287-70856306 | Msa0182380:CDS | 50.0% | |
| GTGGGAATTCACTTGGGATG+AGG | - | chr1_4:70856369-70856388 | Msa0182380:CDS | 50.0% | |
| AGCTCAGGTGGAAGGAAAGT+TGG | + | chr1_4:70856532-70856551 | None:intergenic | 50.0% | |
| CGGACGAAGGAAAAGGACTA+TGG | + | chr1_4:70856819-70856838 | None:intergenic | 50.0% | |
| GTTCGGTATATCTCGGACGA+AGG | + | chr1_4:70856832-70856851 | None:intergenic | 50.0% | |
| CAATCCAAGCGAGGCTACAT+AGG | - | chr1_4:70856973-70856992 | Msa0182380:CDS | 50.0% | |
| AAGACCTATGTAGCCTCGCT+TGG | + | chr1_4:70856980-70856999 | None:intergenic | 50.0% | |
| TCAAACTGTGATGCTTGGGG+TGG | - | chr1_4:70857128-70857147 | Msa0182380:CDS | 50.0% | |
| CAAATCGCAAACCCTGCTAG+AGG | - | chr1_4:70857249-70857268 | Msa0182380:CDS | 50.0% | |
| CTTCTTGCACATCCTTTCCG+CGG | + | chr1_4:70857275-70857294 | None:intergenic | 50.0% | |
| AACGACACATTTGGAAGGCC+TGG | - | chr1_4:70857330-70857349 | Msa0182380:CDS | 50.0% | |
| AAGCGATTCTCTCCCAACTC+TGG | + | chr1_4:70857389-70857408 | None:intergenic | 50.0% | |
| ! | CCACCAGCATGCTCTTCTTT+TGG | + | chr1_4:70857542-70857561 | None:intergenic | 50.0% |
| ! | CCAAAAGAAGAGCATGCTGG+TGG | - | chr1_4:70857539-70857558 | Msa0182380:CDS | 50.0% |
| AATCGCGCCGCTTAATGATG+GGG | + | chr1_4:70857586-70857605 | None:intergenic | 50.0% | |
| GAATCGCGCCGCTTAATGAT+GGG | + | chr1_4:70857587-70857606 | None:intergenic | 50.0% | |
| CATCATTAAGCGGCGCGATT+CGG | - | chr1_4:70857586-70857605 | Msa0182380:CDS | 50.0% | |
| ATCATTAAGCGGCGCGATTC+GGG | - | chr1_4:70857587-70857606 | Msa0182380:CDS | 50.0% | |
| TTCAGACTCCGGGACCATTA+AGG | + | chr1_4:70857658-70857677 | None:intergenic | 50.0% | |
| GCTTCTTGCAGGATCTGGAA+AGG | - | chr1_4:70857745-70857764 | Msa0182380:CDS | 50.0% | |
| GGGCTTGTAGAGATCATCTG+AGG | - | chr1_4:70857766-70857785 | Msa0182380:CDS | 50.0% | |
| ATCATCTGAGGAGGAGATGC+TGG | - | chr1_4:70857778-70857797 | Msa0182380:CDS | 50.0% | |
| TCATCTGAGGAGGAGATGCT+GGG | - | chr1_4:70857779-70857798 | Msa0182380:CDS | 50.0% | |
| !! | CAAAAGAATCGCTCGGTGCT+TGG | + | chr1_4:70857898-70857917 | None:intergenic | 50.0% |
| !!! | CAAGCACCGAGCGATTCTTT+TGG | - | chr1_4:70857896-70857915 | Msa0182380:intron | 50.0% |
| GATAGTACTATGGTGCAGCC+TGG | - | chr1_4:70857924-70857943 | Msa0182380:intron | 50.0% | |
| !! | CTTGGACTTGCTGCAGAACA+CGG | - | chr1_4:70858083-70858102 | Msa0182380:intron | 50.0% |
| !! | AGAGTCCAAAGAGAGTGCTC+TGG | - | chr1_4:70858387-70858406 | Msa0182380:intron | 50.0% |
| ! | CCAAACCAGAGCACTCTCTT+TGG | + | chr1_4:70858395-70858414 | None:intergenic | 50.0% |
| !! | CCAAAGAGAGTGCTCTGGTT+TGG | - | chr1_4:70858392-70858411 | Msa0182380:intron | 50.0% |
| CAAGGAAACACGTCCGCAAT+GGG | + | chr1_4:70859243-70859262 | None:intergenic | 50.0% | |
| ! | GGTTTTTGACCAACGGTGCA+AGG | + | chr1_4:70859261-70859280 | None:intergenic | 50.0% |
| CCTCACCCCTTTCTTCTCCA+GGG | + | chr1_4:70854972-70854991 | None:intergenic | 55.0% | |
| TCCTCACCCCTTTCTTCTCC+AGG | + | chr1_4:70854973-70854992 | None:intergenic | 55.0% | |
| TTCGACTAGTGTGAGGACGC+AGG | - | chr1_4:70855033-70855052 | Msa0182380:intron | 55.0% | |
| ACTAGTGTGAGGACGCAGGA+TGG | - | chr1_4:70855037-70855056 | Msa0182380:intron | 55.0% | |
| CTAGTGTGAGGACGCAGGAT+GGG | - | chr1_4:70855038-70855057 | Msa0182380:intron | 55.0% | |
| TAGTGTGAGGACGCAGGATG+GGG | - | chr1_4:70855039-70855058 | Msa0182380:intron | 55.0% | |
| GCGGAAACCGTACGCTTCTA+AGG | + | chr1_4:70855263-70855282 | None:intergenic | 55.0% | |
| CTATCGGACAGCAGTCAGAC+CGG | - | chr1_4:70855537-70855556 | Msa0182380:CDS | 55.0% | |
| !! | GTATGGTACGGAGTGTTGGG+CGG | - | chr1_4:70855567-70855586 | Msa0182380:CDS | 55.0% |
| CGGAGATGAGGATGTTGCGT+TGG | - | chr1_4:70855623-70855642 | Msa0182380:CDS | 55.0% | |
| CTTCTTACCACGGCGTCTAC+GGG | + | chr1_4:70855774-70855793 | None:intergenic | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | + | chr1_4:70855941-70855960 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | - | chr1_4:70855940-70855959 | Msa0182380:CDS | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | - | chr1_4:70855941-70855960 | Msa0182380:CDS | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | chr1_4:70855947-70855966 | Msa0182380:CDS | 55.0% | |
| CCAGCAACAGTTGCCACTCT+TGG | + | chr1_4:70856214-70856233 | None:intergenic | 55.0% | |
| CCAAGAGTGGCAACTGTTGC+TGG | - | chr1_4:70856211-70856230 | Msa0182380:CDS | 55.0% | |
| GATGCTTGGGGTGGATGACA+TGG | - | chr1_4:70857137-70857156 | Msa0182380:CDS | 55.0% | |
| GGCTGCTCCCCATCATTAAG+CGG | - | chr1_4:70857576-70857595 | Msa0182380:CDS | 55.0% | |
| CGAATCGCGCCGCTTAATGA+TGG | + | chr1_4:70857588-70857607 | None:intergenic | 55.0% | |
| GGATTCCGCCTTAATGGTCC+CGG | - | chr1_4:70857647-70857666 | Msa0182380:CDS | 55.0% | |
| AGACTCCGGGACCATTAAGG+CGG | + | chr1_4:70857655-70857674 | None:intergenic | 55.0% | |
| GCGTAGCTTCTTGCAGGATC+TGG | - | chr1_4:70857740-70857759 | Msa0182380:CDS | 55.0% | |
| CATCTGAGGAGGAGATGCTG+GGG | - | chr1_4:70857780-70857799 | Msa0182380:CDS | 55.0% | |
| AGGAGGAGATGCTGGGGAAT+TGG | - | chr1_4:70857786-70857805 | Msa0182380:CDS | 55.0% | |
| TCGGCCATGCTAGCGTAACA+TGG | + | chr1_4:70858698-70858717 | None:intergenic | 55.0% | |
| GGCATCTCTATCGCCCATTG+CGG | - | chr1_4:70859227-70859246 | Msa0182380:intron | 55.0% | |
| GCAAGGAAACACGTCCGCAA+TGG | + | chr1_4:70859244-70859263 | None:intergenic | 55.0% | |
| GACGTGTTTCCTTGCACCGT+TGG | - | chr1_4:70859249-70859268 | Msa0182380:intron | 55.0% | |
| CCCTGGAGAAGAAAGGGGTG+AGG | - | chr1_4:70854969-70854988 | Msa0182380:intron | 60.0% | |
| AGGGGGCTTCGACTAGTGTG+AGG | - | chr1_4:70855026-70855045 | Msa0182380:intron | 60.0% | |
| AGGACGCAGGATGGGGATAC+CGG | - | chr1_4:70855046-70855065 | Msa0182380:intron | 60.0% | |
| ! | CTTGCTTGGTGAGTCGAGGG+AGG | - | chr1_4:70855204-70855223 | Msa0182380:intron | 60.0% |
| CGAGGGAGGAGTTAAACGGG+AGG | - | chr1_4:70855218-70855237 | Msa0182380:intron | 60.0% | |
| ACGGGAGGCTAGAGACTTGG+AGG | - | chr1_4:70855233-70855252 | Msa0182380:intron | 60.0% | |
| TCATGCGGCTCGCCGTCTTT+CGG | - | chr1_4:70856169-70856188 | Msa0182380:CDS | 60.0% | |
| CTTCCGCTGTCGCCTGATCT+TGG | - | chr1_4:70856613-70856632 | Msa0182380:CDS | 60.0% | |
| CCACCAAGATCAGGCGACAG+CGG | + | chr1_4:70856619-70856638 | None:intergenic | 60.0% | |
| TTGGGCGCGTAGCTTCTTGC+AGG | - | chr1_4:70857734-70857753 | Msa0182380:CDS | 60.0% | |
| GAGAAGACCCGTAGACGCCG+TGG | - | chr1_4:70855764-70855783 | Msa0182380:intron | 65.0% | |
| CCGCTGTCGCCTGATCTTGG+TGG | - | chr1_4:70856616-70856635 | Msa0182380:CDS | 65.0% | |
| GCAAACCCTGCTAGAGGCCG+CGG | - | chr1_4:70857255-70857274 | Msa0182380:CDS | 65.0% | |
| CCTTTCCGCGGCCTCTAGCA+GGG | + | chr1_4:70857263-70857282 | None:intergenic | 65.0% | |
| TCCTTTCCGCGGCCTCTAGC+AGG | + | chr1_4:70857264-70857283 | None:intergenic | 65.0% | |
| ! | GCGCGATTCGGGTGAATCCG+TGG | - | chr1_4:70857598-70857617 | Msa0182380:CDS | 65.0% |
| CCCTGCTAGAGGCCGCGGAA+AGG | - | chr1_4:70857260-70857279 | Msa0182380:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 70854291 | 70859648 | 70854291 | ID=Msa0182380;Name=Msa0182380 |
| chr1_4 | mRNA | 70854291 | 70859648 | 70854291 | ID=Msa0182380-mRNA-1;Parent=Msa0182380;Name=Msa0182380-mRNA-1;_AED=0.01;_eAED=0.01;_QI=208|1|1|1|0.66|0.5|4|250|855 |
| chr1_4 | exon | 70854291 | 70854846 | 70854291 | ID=Msa0182380-mRNA-1:exon:23769;Parent=Msa0182380-mRNA-1 |
| chr1_4 | exon | 70855393 | 70855666 | 70855393 | ID=Msa0182380-mRNA-1:exon:23768;Parent=Msa0182380-mRNA-1 |
| chr1_4 | exon | 70855822 | 70857838 | 70855822 | ID=Msa0182380-mRNA-1:exon:23767;Parent=Msa0182380-mRNA-1 |
| chr1_4 | exon | 70859470 | 70859648 | 70859470 | ID=Msa0182380-mRNA-1:exon:23766;Parent=Msa0182380-mRNA-1 |
| chr1_4 | five_prime_UTR | 70859470 | 70859648 | 70859470 | ID=Msa0182380-mRNA-1:five_prime_utr;Parent=Msa0182380-mRNA-1 |
| chr1_4 | five_prime_UTR | 70857810 | 70857838 | 70857810 | ID=Msa0182380-mRNA-1:five_prime_utr;Parent=Msa0182380-mRNA-1 |
| chr1_4 | CDS | 70855822 | 70857809 | 70855822 | ID=Msa0182380-mRNA-1:cds;Parent=Msa0182380-mRNA-1 |
| chr1_4 | CDS | 70855393 | 70855666 | 70855393 | ID=Msa0182380-mRNA-1:cds;Parent=Msa0182380-mRNA-1 |
| chr1_4 | CDS | 70854541 | 70854846 | 70854541 | ID=Msa0182380-mRNA-1:cds;Parent=Msa0182380-mRNA-1 |
| chr1_4 | three_prime_UTR | 70854291 | 70854540 | 70854291 | ID=Msa0182380-mRNA-1:three_prime_utr;Parent=Msa0182380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
