AlfalfaGEDB | Msa0137200

M. sativa cultivar zhongmu-4 / Msa0137200

KEGG: K16055
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0033554 GO:0034637 GO:0042578 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044424 GO:0044464 GO:0046351 GO:0050896 GO:0051716 GO:0070413 GO:0071704 GO:1901576
PFAM: PF00982.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0137200	XP_013470155.1	99.180	854	7	0	1	854	1	854	0.0	1766

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0137200	sp\|O23617\|TPS5_ARATH	77.374	853	189	3	1	850	1	852	0.0	1410

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0137200	A0A072VRW8	99.180	854	7	0	1	854	1	854	0.0	1766

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0031220	Msa0137200	0.828849	7.153485e-55	-8.615850e-47
Msa0043280	Msa0137200	0.918658	1.187407e-86	-8.615850e-47
Msa0053830	Msa0137200	0.808134	3.594886e-50	-8.615850e-47
Msa0078510	Msa0137200	0.814618	1.405613e-51	-8.615850e-47
Msa0099660	Msa0137200	0.811233	7.754393e-51	-8.615850e-47
Msa0099670	Msa0137200	0.822209	2.677604e-53	-8.615850e-47
Msa0126290	Msa0137200	0.821694	3.524126e-53	-8.615850e-47
Msa0137200	Msa0171170	0.858952	5.784407e-63	-8.615850e-47
Msa0137200	Msa0182380	0.955251	4.656089e-113	-8.615850e-47
Msa0137200	Msa0238260	0.803121	4.054478e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0137200	MtrunA17_Chr1g0209251	99.180	854	7	0	1	854	1	854	0.0	1766
Msa0137200	MtrunA17_Chr8g0391971	72.824	850	223	5	1	843	1	849	0.0	1312
Msa0137200	MtrunA17_Chr1g0161531	72.535	852	224	6	1	843	1	851	0.0	1300
Msa0137200	MtrunA17_Chr4g0041381	64.947	853	288	3	1	844	1	851	0.0	1204
Msa0137200	MtrunA17_Chr8g0364961	66.982	845	271	2	1	843	1	839	0.0	1182
Msa0137200	MtrunA17_Chr4g0073041	60.050	801	310	7	52	846	47	843	0.0	1003
Msa0137200	MtrunA17_Chr3g0117891	53.766	770	353	2	83	850	3	771	0.0	845
Msa0137200	MtrunA17_Chr3g0107401	49.082	599	275	3	61	659	1	569	0.0	576
Msa0137200	MtrunA17_Chr2g0314621	34.321	810	464	20	1	792	74	833	7.34e-144	449
Msa0137200	MtrunA17_Chr8g0359371	35.714	756	423	21	58	792	83	796	6.40e-140	438

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0137200	AT4G17770.1	77.374	853	189	3	1	850	1	852	1410
Msa0137200	AT4G17770.2	77.374	853	189	3	1	850	1	852	1410
Msa0137200	AT1G68020.2	71.114	862	224	6	1	843	1	856	1301
Msa0137200	AT1G68020.3	71.114	862	224	6	1	843	1	856	1301
Msa0137200	AT1G06410.3	67.217	848	266	4	1	844	1	840	1181
Msa0137200	AT1G06410.1	67.217	848	266	4	1	844	1	840	1181
Msa0137200	AT1G06410.2	67.217	848	266	4	1	844	1	840	1181
Msa0137200	AT1G23870.1	63.860	855	307	1	1	853	1	855	1158
Msa0137200	AT1G70290.1	62.426	841	309	3	1	839	1	836	1120
Msa0137200	AT1G60140.6	61.091	843	326	1	1	841	1	843	1109

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Find 213 sgRNAs with CRISPR-Local

Find 288 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGATAAACGACACATT+TGG	0.409911	1_3:-69504687	Msa0137200:CDS
AAACTTATGCAACCGTGAAA+AGG	0.479354	1_3:-69504704	Msa0137200:CDS
AAACTTTAGAAAGCTATCTG+TGG	0.628781	1_3:-69504163	Msa0137200:CDS
AAAGGTCAAACTGTGATGCT+TGG	0.478423	1_3:-69504885	Msa0137200:CDS
AACGACACATTTGGAAGGCC+TGG	0.452363	1_3:-69504678	Msa0137200:CDS
AACTAACATTCATTCATTCA+AGG	0.456387	1_3:-69506444	Msa0137200:intron
AAGACCTATGTAGCCTCGCT+TGG	0.466700	1_3:+69505031	None:intergenic
AAGATTACAGGTGTGTATCC+AGG	0.509121	1_3:+69504660	None:intergenic
AAGCAAAGCCAAATATTACT+TGG	0.502945	1_3:-69502724	Msa0137200:CDS
AAGCGATTCTCTCCCAACTC+TGG	0.499258	1_3:+69504622	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGGTAATTAACACTGAATTG+GGG	+	chr1_3:69502666-69502685	None:intergenic	30.0%
CTGGTAATTAACACTGAATT+GGG	+	chr1_3:69502667-69502686	None:intergenic	30.0%
TGAAGTAAGATCTAACAAGT+TGG	+	chr1_3:69503121-69503140	None:intergenic	30.0%
TTGTTAGATCTTACTTCATG+CGG	-	chr1_3:69503123-69503142	Msa0137200:intron	30.0%
TAGAATTTAGTGAAAAGCTC+AGG	+	chr1_3:69503516-69503535	None:intergenic	30.0%
GTTTCTGTAAACAACATCTA+TGG	-	chr1_3:69503541-69503560	Msa0137200:CDS	30.0%
TTCTGAATTCTGACCTTATA+GGG	-	chr1_3:69503853-69503872	Msa0137200:intron	30.0%
TTTACAACATGCTGAAATGA+GGG	-	chr1_3:69504178-69504197	Msa0137200:CDS	30.0%
AAAAGGATAAACGACACATT+TGG	-	chr1_3:69504290-69504309	Msa0137200:CDS	30.0%
GAGTATATCATTTGTAGACA+AGG	-	chr1_3:69504443-69504462	Msa0137200:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	69502379	69506620	69502379	ID=Msa0137200;Name=Msa0137200
chr1_3	mRNA	69502379	69506620	69502379	ID=Msa0137200-mRNA-1;Parent=Msa0137200;Name=Msa0137200-mRNA-1;_AED=0.03;_eAED=0.03;_QI=205\|1\|1\|1\|0.66\|0.5\|4\|250\|855
chr1_3	exon	69502379	69502934	69502379	ID=Msa0137200-mRNA-1:exon:24076;Parent=Msa0137200-mRNA-1
chr1_3	exon	69503483	69503756	69503483	ID=Msa0137200-mRNA-1:exon:24075;Parent=Msa0137200-mRNA-1
chr1_3	exon	69503913	69505929	69503913	ID=Msa0137200-mRNA-1:exon:24074;Parent=Msa0137200-mRNA-1
chr1_3	exon	69506445	69506620	69506445	ID=Msa0137200-mRNA-1:exon:24073;Parent=Msa0137200-mRNA-1
chr1_3	five_prime_UTR	69506445	69506620	69506445	ID=Msa0137200-mRNA-1:five_prime_utr;Parent=Msa0137200-mRNA-1
chr1_3	five_prime_UTR	69505901	69505929	69505901	ID=Msa0137200-mRNA-1:five_prime_utr;Parent=Msa0137200-mRNA-1
chr1_3	CDS	69503913	69505900	69503913	ID=Msa0137200-mRNA-1:cds;Parent=Msa0137200-mRNA-1
chr1_3	CDS	69503483	69503756	69503483	ID=Msa0137200-mRNA-1:cds;Parent=Msa0137200-mRNA-1
chr1_3	CDS	69502629	69502934	69502629	ID=Msa0137200-mRNA-1:cds;Parent=Msa0137200-mRNA-1
chr1_3	three_prime_UTR	69502379	69502628	69502379	ID=Msa0137200-mRNA-1:three_prime_utr;Parent=Msa0137200-mRNA-1

Gene Sequence

>Msa0137200

ATGGCTTCAAGGTCATATTCCAACTTGTTAGATCTTACTTCATGCGGCTCGCCGTCTTTCGGTCGTGAGAAGAAAAGGCTTCCAAGAGTGGCAACTGTTGCTGGAGTGCTATCTGAATTAGATGATGAAACCAACAACAGTGTTGGTTCTGATGCTCCATCCTCCATTTCTCAAGAAAGGATGATCATTGTTGGTAACCAGCTTCCATTGAAGGCACAAAGGAAAGAGGAAAATGGTAAGTGGGAATTCACTTGGGATGAGGATTCACTTCTTTTACAGCTGAAAGATGGTCTTGGTGATGATGTTGAAACAATCTATATTGGTTGTCTTAAAGAAGAAATTGATCCAATTGAGCAAGATGATGTTGCTCAGTACTTGCTTGACAATTTCAAATGTGTACCAACTTTCCTTCCACCTGAGCTTTTCACTAAATTCTATCATGGTTTCTGTAAACAACATCTATGGCCTTTGTTTCACTACATGCTTCCGCTGTCGCCTGATCTCGGTGGTCGATTTGATCGATCTCTTTGGCAGGCTTATGTTTCTGTCAACAAAATATTTGCTGATAAAGTGATGGAAGTTATCAACCCTGATGAGGATTTTGTTTGGGTTCATGACTACCACTTGATGGTTCTTCCAACATTTTTGAGAAAGAGATTTAACAGGGCAAGGCTTGGATTCTTCCTCCATAGTCCTTTTCCTTCGTCCGAGATATACCGAACCCTTCCTGTTAGAGATGAACTTCTTAGAGCTCTTCTGAATTCTGACCTTATAGGGTTTCATACTTTCGACTATGCTAGGCATTTCCTCTCCTGTTGCAGTAGAATGTTGGGAATTGCTTATCAATCCAAGCGAGGCTACATAGGTCTTGAGTACTATGGAAGAACTGTTAGCATTAAGATTCTTCCTGTTGGTATTCATATAGGCCAGCTTGAGTCAGTCATGAATCTTTCTGAGACAGAAAGCAAGGTTGCTGAGTTAAGAAACCAGTTCAAAGGTCAAACTGTGATGCTTGGGGTGGATGACATGGATATCTTCAAAGGCATCAGCTTAAAACTTTTGGCAATGGAACAATTGCTTTTACAACATGCTGAAATGAGGGGAAAGGTTGTTCTGGTTCAAATCGCAAACCCTGCTAGAGGCCGCGGAAAGGATGTGCAAGAAGTGCAGTGTGAAACTTATGCAACCGTGAAAAGGATAAACGACACATTTGGAAGGCCTGGATACACACCTGTAATCTTGATCGATACAACACTCCAGAGTTGGGAGAGAATCGCTTACTATGCAATTGCGGAATGTTGTCTTGTTACAGCAGTGAGAGATGGGATGAATCTTATACCATATGAGTATATCATTTGTAGACAAGGAAATGAGAAGATAGATGAGATTTTAGGAATAAATTCAACTATCCAAAAGAAGAGCATGCTGGTGGTGTCTGAATTCATTGGCTGCTCCCCATCATTAAGCGGCGCGATTCGGGTGAATCCGTGGAATATTGATGCTGTTGCTGAAGCTATGGATTCCGCCTTAATGGTCCCGGAGTCTGAAAAACATATGCGTCATGAGAAGCATTATAGGTACGTTAGTACGCACGATGTTGCATATTGGGCGCGTAGCTTCTTGCAGGATCTGGAAAGGGCTTGTAGAGATCATCTGAGGAGGAGATGCTGGGGAATTGGTTTTGGTTTAGGATTTCGAGTAATAGCTTTGGACCCAAACTTTAGAAAGCTATCTGTGGAACACATTGTTTCAGCTTATAAGAGGACCAAGCACCGAGCGATTCTTTTGGATTATGATAGTACTATGGTGCAGCCTGGATCAATTAGTGCAACACCTAGTGCTGAAGCTGTTTCCATCTTGAACAGCTTGTGCAGTGATACCAAGAATTGTGTTTTCATTGTGAGTGGAAAGGAGAGAAACACTCTCACTGAATGGTTTTCTTCTTGTGAAAAGCTTGGACTTGCTGCAGAACACGGCTATTTTGTGAAGACAAGCCATACTGAAGAATGGGAAGCTTGTGTTTCTGTGCCTGATTTTGACTGGAAACAGATTGCTGAGCCAGTTATGCAGTTATATACAGAAACTACTGATGGTTCTAACATAGAGTCCAAAGAGAGTGCTCTGGTTTGGAATTACGAATTTGCAGACCGAGATTTCGGTTCATGTCAAGCTAAGGAACTTCTTGATCATCTGGAAAGTGTTCTTGCTAATGAGCCTGTTTCAGTTAAAAGTGGCCCATACATTGTGGAAGTTAAACCTCAGGGTGTGAGTAAGGGTATTGTTGCAGAACGTATTCTGATAACAATGCAACAAAAGGGAGTGATTCCAGATTTTGTTCTATGCATTGGTGATGACAGATCAGATGAGGACATGTTTGGGGTAATAACAAGTGCAAGGGCATCTCTATCGCCCATTGCGGACGTGTTTCCTTGCACCGTTGGTCAAAAACCAAGCAAAGCCAAATATTACTTGGAAGACACAAGTGAGATTTTGAGGATGTTGCAAGGTCTTGCCAATGCTTCTGAACAAACTGCTGCTAGAAGTTCTTCCCAGTTATCTCCTCATTAA

Protein sequence

>Msa0137200

MASRSYSNLLDLTSCGSPSFGREKKRLPRVATVAGVLSELDDETNNSVGSDAPSSISQERMIIVGNQLPLKAQRKEENGKWEFTWDEDSLLLQLKDGLGDDVETIYIGCLKEEIDPIEQDDVAQYLLDNFKCVPTFLPPELFTKFYHGFCKQHLWPLFHYMLPLSPDLGGRFDRSLWQAYVSVNKIFADKVMEVINPDEDFVWVHDYHLMVLPTFLRKRFNRARLGFFLHSPFPSSEIYRTLPVRDELLRALLNSDLIGFHTFDYARHFLSCCSRMLGIAYQSKRGYIGLEYYGRTVSIKILPVGIHIGQLESVMNLSETESKVAELRNQFKGQTVMLGVDDMDIFKGISLKLLAMEQLLLQHAEMRGKVVLVQIANPARGRGKDVQEVQCETYATVKRINDTFGRPGYTPVILIDTTLQSWERIAYYAIAECCLVTAVRDGMNLIPYEYIICRQGNEKIDEILGINSTIQKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVAEAMDSALMVPESEKHMRHEKHYRYVSTHDVAYWARSFLQDLERACRDHLRRRCWGIGFGLGFRVIALDPNFRKLSVEHIVSAYKRTKHRAILLDYDSTMVQPGSISATPSAEAVSILNSLCSDTKNCVFIVSGKERNTLTEWFSSCEKLGLAAEHGYFVKTSHTEEWEACVSVPDFDWKQIAEPVMQLYTETTDGSNIESKESALVWNYEFADRDFGSCQAKELLDHLESVLANEPVSVKSGPYIVEVKPQGVSKGIVAERILITMQQKGVIPDFVLCIGDDRSDEDMFGVITSARASLSPIADVFPCTVGQKPSKAKYYLEDTSEILRMLQGLANASEQTAARSSSQLSPH*