Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0137200 | XP_013470155.1 | 99.180 | 854 | 7 | 0 | 1 | 854 | 1 | 854 | 0.0 | 1766 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0137200 | sp|O23617|TPS5_ARATH | 77.374 | 853 | 189 | 3 | 1 | 850 | 1 | 852 | 0.0 | 1410 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0137200 | A0A072VRW8 | 99.180 | 854 | 7 | 0 | 1 | 854 | 1 | 854 | 0.0 | 1766 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0031220 | Msa0137200 | 0.828849 | 7.153485e-55 | -8.615850e-47 |
Msa0043280 | Msa0137200 | 0.918658 | 1.187407e-86 | -8.615850e-47 |
Msa0053830 | Msa0137200 | 0.808134 | 3.594886e-50 | -8.615850e-47 |
Msa0078510 | Msa0137200 | 0.814618 | 1.405613e-51 | -8.615850e-47 |
Msa0099660 | Msa0137200 | 0.811233 | 7.754393e-51 | -8.615850e-47 |
Msa0099670 | Msa0137200 | 0.822209 | 2.677604e-53 | -8.615850e-47 |
Msa0126290 | Msa0137200 | 0.821694 | 3.524126e-53 | -8.615850e-47 |
Msa0137200 | Msa0171170 | 0.858952 | 5.784407e-63 | -8.615850e-47 |
Msa0137200 | Msa0182380 | 0.955251 | 4.656089e-113 | -8.615850e-47 |
Msa0137200 | Msa0238260 | 0.803121 | 4.054478e-49 | -8.615850e-47 |
Msa0137200 | Msa0275690 | 0.814539 | 1.463454e-51 | -8.615850e-47 |
Msa0137200 | Msa0660330 | 0.824351 | 8.460506e-54 | -8.615850e-47 |
Msa0137200 | Msa1404500 | 0.959168 | 3.805324e-117 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0137200 | MtrunA17_Chr1g0209251 | 99.180 | 854 | 7 | 0 | 1 | 854 | 1 | 854 | 0.0 | 1766 |
Msa0137200 | MtrunA17_Chr8g0391971 | 72.824 | 850 | 223 | 5 | 1 | 843 | 1 | 849 | 0.0 | 1312 |
Msa0137200 | MtrunA17_Chr1g0161531 | 72.535 | 852 | 224 | 6 | 1 | 843 | 1 | 851 | 0.0 | 1300 |
Msa0137200 | MtrunA17_Chr4g0041381 | 64.947 | 853 | 288 | 3 | 1 | 844 | 1 | 851 | 0.0 | 1204 |
Msa0137200 | MtrunA17_Chr8g0364961 | 66.982 | 845 | 271 | 2 | 1 | 843 | 1 | 839 | 0.0 | 1182 |
Msa0137200 | MtrunA17_Chr4g0073041 | 60.050 | 801 | 310 | 7 | 52 | 846 | 47 | 843 | 0.0 | 1003 |
Msa0137200 | MtrunA17_Chr3g0117891 | 53.766 | 770 | 353 | 2 | 83 | 850 | 3 | 771 | 0.0 | 845 |
Msa0137200 | MtrunA17_Chr3g0107401 | 49.082 | 599 | 275 | 3 | 61 | 659 | 1 | 569 | 0.0 | 576 |
Msa0137200 | MtrunA17_Chr2g0314621 | 34.321 | 810 | 464 | 20 | 1 | 792 | 74 | 833 | 7.34e-144 | 449 |
Msa0137200 | MtrunA17_Chr8g0359371 | 35.714 | 756 | 423 | 21 | 58 | 792 | 83 | 796 | 6.40e-140 | 438 |
Msa0137200 | MtrunA17_Chr8g0380051 | 38.082 | 365 | 201 | 10 | 37 | 398 | 54 | 396 | 8.20e-71 | 240 |
Msa0137200 | MtrunA17_Chr8g0380061 | 32.877 | 438 | 244 | 14 | 387 | 806 | 5 | 410 | 5.30e-57 | 204 |
Msa0137200 | MtrunA17_Chr3g0107421 | 48.485 | 165 | 85 | 0 | 252 | 416 | 1 | 165 | 2.25e-48 | 169 |
Msa0137200 | MtrunA17_Chr3g0116901 | 43.243 | 185 | 85 | 3 | 8 | 192 | 6 | 170 | 7.64e-46 | 162 |
Msa0137200 | MtrunA17_Chr3g0107411 | 51.701 | 147 | 71 | 0 | 443 | 589 | 1 | 147 | 1.89e-45 | 160 |
Msa0137200 | MtrunA17_Chr3g0107431 | 42.241 | 116 | 52 | 2 | 58 | 173 | 9 | 109 | 7.10e-26 | 102 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0137200 | AT4G17770.1 | 77.374 | 853 | 189 | 3 | 1 | 850 | 1 | 852 | 0.0 | 1410 |
Msa0137200 | AT4G17770.2 | 77.374 | 853 | 189 | 3 | 1 | 850 | 1 | 852 | 0.0 | 1410 |
Msa0137200 | AT1G68020.2 | 71.114 | 862 | 224 | 6 | 1 | 843 | 1 | 856 | 0.0 | 1301 |
Msa0137200 | AT1G68020.3 | 71.114 | 862 | 224 | 6 | 1 | 843 | 1 | 856 | 0.0 | 1301 |
Msa0137200 | AT1G06410.3 | 67.217 | 848 | 266 | 4 | 1 | 844 | 1 | 840 | 0.0 | 1181 |
Msa0137200 | AT1G06410.1 | 67.217 | 848 | 266 | 4 | 1 | 844 | 1 | 840 | 0.0 | 1181 |
Msa0137200 | AT1G06410.2 | 67.217 | 848 | 266 | 4 | 1 | 844 | 1 | 840 | 0.0 | 1181 |
Msa0137200 | AT1G23870.1 | 63.860 | 855 | 307 | 1 | 1 | 853 | 1 | 855 | 0.0 | 1158 |
Msa0137200 | AT1G70290.1 | 62.426 | 841 | 309 | 3 | 1 | 839 | 1 | 836 | 0.0 | 1120 |
Msa0137200 | AT1G60140.6 | 61.091 | 843 | 326 | 1 | 1 | 841 | 1 | 843 | 0.0 | 1109 |
Msa0137200 | AT1G60140.1 | 61.091 | 843 | 326 | 1 | 1 | 841 | 1 | 843 | 0.0 | 1109 |
Msa0137200 | AT1G60140.2 | 61.091 | 843 | 326 | 1 | 1 | 841 | 1 | 843 | 0.0 | 1109 |
Msa0137200 | AT1G60140.5 | 61.091 | 843 | 326 | 1 | 1 | 841 | 1 | 843 | 0.0 | 1109 |
Msa0137200 | AT1G60140.4 | 61.091 | 843 | 326 | 1 | 1 | 841 | 1 | 843 | 0.0 | 1109 |
Msa0137200 | AT1G68020.1 | 71.701 | 682 | 170 | 5 | 1 | 665 | 1 | 676 | 0.0 | 1045 |
Msa0137200 | AT2G18700.1 | 58.392 | 846 | 338 | 7 | 1 | 842 | 1 | 836 | 0.0 | 1043 |
Msa0137200 | AT1G70290.2 | 58.621 | 841 | 303 | 4 | 1 | 839 | 1 | 798 | 0.0 | 1030 |
Msa0137200 | AT1G60140.3 | 61.804 | 754 | 288 | 0 | 1 | 754 | 1 | 754 | 0.0 | 1007 |
Msa0137200 | AT1G16980.1 | 34.761 | 817 | 462 | 26 | 60 | 850 | 13 | 784 | 1.32e-145 | 450 |
Msa0137200 | AT1G78580.4 | 34.875 | 757 | 431 | 19 | 57 | 792 | 90 | 805 | 3.73e-141 | 442 |
Msa0137200 | AT1G78580.1 | 34.875 | 757 | 431 | 19 | 57 | 792 | 90 | 805 | 3.73e-141 | 442 |
Msa0137200 | AT1G78580.2 | 34.875 | 757 | 431 | 19 | 57 | 792 | 90 | 805 | 3.73e-141 | 442 |
Msa0137200 | AT1G78580.3 | 34.875 | 757 | 431 | 19 | 57 | 792 | 90 | 805 | 3.73e-141 | 442 |
Msa0137200 | AT4G27550.2 | 33.976 | 830 | 450 | 27 | 56 | 837 | 1 | 780 | 3.29e-137 | 427 |
Msa0137200 | AT4G27550.1 | 34.135 | 832 | 455 | 28 | 56 | 837 | 1 | 789 | 1.57e-136 | 426 |
Msa0137200 | AT1G16980.2 | 35.220 | 636 | 353 | 20 | 60 | 681 | 13 | 603 | 6.82e-118 | 373 |
Find 213 sgRNAs with CRISPR-Local
Find 288 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAATGCAAGAATACCCTTTC+TGG | 0.172862 | 1_3:-69506603 | None:intergenic |
ACAGATAGCTTTCTAAAGTT+TGG | 0.197254 | 1_3:+69504165 | None:intergenic |
CTTCTGAATTCTGACCTTAT+AGG | 0.215099 | 1_3:-69505125 | Msa0137200:CDS |
AGATGCTGGGGAATTGGTTT+TGG | 0.230491 | 1_3:-69504216 | Msa0137200:CDS |
CCACCAGCATGCTCTTCTTT+TGG | 0.238177 | 1_3:+69504469 | None:intergenic |
TGTGTCTTCCAAGTAATATT+TGG | 0.250613 | 1_3:+69502716 | None:intergenic |
TTCTGAATTCTGACCTTATA+GGG | 0.267422 | 1_3:-69505124 | Msa0137200:CDS |
AGGCATCAGCTTAAAACTTT+TGG | 0.272351 | 1_3:-69504838 | Msa0137200:CDS |
CAAAAGAATAAGAATGAAAA+TGG | 0.273130 | 1_3:+69502371 | None:intergenic |
CTTCCTGTTGGTATTCATAT+AGG | 0.288144 | 1_3:-69504975 | Msa0137200:CDS |
CATCATTAAGCGGCGCGATT+CGG | 0.290810 | 1_3:-69504422 | Msa0137200:CDS |
CAAGCACCGAGCGATTCTTT+TGG | 0.298713 | 1_3:-69504112 | Msa0137200:CDS |
CCAAGAGTGGCAACTGTTGC+TGG | 0.299481 | 1_3:-69505797 | Msa0137200:CDS |
CACAATGAAAACACAATTCT+TGG | 0.302805 | 1_3:+69503999 | None:intergenic |
GAATTTGCAGACCGAGATTT+CGG | 0.306462 | 1_3:-69503586 | Msa0137200:CDS |
CAGATAGCTTTCTAAAGTTT+GGG | 0.314076 | 1_3:+69504166 | None:intergenic |
TCCTTTCCGCGGCCTCTAGC+AGG | 0.317442 | 1_3:+69504747 | None:intergenic |
TAACGGAGAAGAAGAATCTT+TGG | 0.323144 | 1_3:-69506484 | Msa0137200:five_prime_UTR |
TTGCTTAATGAGGAGATAAC+TGG | 0.325875 | 1_3:+69502625 | None:intergenic |
CTTGGTTGGTTATCTTGTAT+TGG | 0.332117 | 1_3:-69502537 | Msa0137200:three_prime_UTR |
TACGCACGATGTTGCATATT+GGG | 0.340179 | 1_3:-69504292 | Msa0137200:CDS |
CCAAACCAGAGCACTCTCTT+TGG | 0.342936 | 1_3:+69503615 | None:intergenic |
TCTTTCCTTTGTGCCTTCAA+TGG | 0.344898 | 1_3:+69505674 | None:intergenic |
TTTGGATTATGATAGTACTA+TGG | 0.345249 | 1_3:-69504094 | Msa0137200:CDS |
AGCTATGGATTCCGCCTTAA+TGG | 0.346795 | 1_3:-69504367 | Msa0137200:CDS |
GATCATCCTTTCTTGAGAAA+TGG | 0.352240 | 1_3:+69505715 | None:intergenic |
GGTTTAACTTCCACAATGTA+TGG | 0.356426 | 1_3:+69503487 | None:intergenic |
GCAACATCATCTTGCTCAAT+TGG | 0.362213 | 1_3:+69505533 | None:intergenic |
TCTGTATATAACTGCATAAC+TGG | 0.363196 | 1_3:+69503664 | None:intergenic |
AGGAGGAGATGCTGGGGAAT+TGG | 0.363586 | 1_3:-69504222 | Msa0137200:CDS |
AAGCTTCCCATTCTTCAGTA+TGG | 0.363738 | 1_3:+69503728 | None:intergenic |
AGATCAGATGAGGACATGTT+TGG | 0.364020 | 1_3:-69502819 | Msa0137200:CDS |
TTCAGACTCCGGGACCATTA+AGG | 0.365240 | 1_3:+69504353 | None:intergenic |
CTAAGAAGTTCATCTCTAAC+AGG | 0.372241 | 1_3:+69505152 | None:intergenic |
CCAATGCATAGAACAAAATC+TGG | 0.378049 | 1_3:+69502849 | None:intergenic |
GTTGTATCGATCAAGATTAC+AGG | 0.378659 | 1_3:+69504648 | None:intergenic |
GGTTCATGACTACCACTTGA+TGG | 0.384948 | 1_3:-69505270 | Msa0137200:CDS |
ATCATCTGAGGAGGAGATGC+TGG | 0.385858 | 1_3:-69504230 | Msa0137200:CDS |
GTCGATTTGATCGATCTCTT+TGG | 0.389308 | 1_3:-69505370 | Msa0137200:CDS |
TTTGTTGCAGGGTGTGAGTA+AGG | 0.391370 | 1_3:-69502922 | Msa0137200:intron |
CTTTCGGTCGTGAGAAGAAA+AGG | 0.392381 | 1_3:-69505823 | Msa0137200:CDS |
GTGTGTTGTGTTATTATTAA+CGG | 0.393755 | 1_3:-69506501 | Msa0137200:five_prime_UTR |
GTTTCTGTAAACAACATCTA+TGG | 0.394301 | 1_3:-69505436 | Msa0137200:CDS |
ATCTGTTTCCAGTCAAAATC+AGG | 0.395840 | 1_3:+69503694 | None:intergenic |
GCACAAAGGAAAGAGGAAAA+TGG | 0.406553 | 1_3:-69505665 | Msa0137200:CDS |
ACATTGTTTCAGCTTATAAG+AGG | 0.408474 | 1_3:-69504137 | Msa0137200:CDS |
AAAAGGATAAACGACACATT+TGG | 0.409911 | 1_3:-69504687 | Msa0137200:CDS |
ATCATTAAGCGGCGCGATTC+GGG | 0.410018 | 1_3:-69504421 | Msa0137200:CDS |
TAAGGAACTTCTTGATCATC+TGG | 0.414096 | 1_3:-69503551 | Msa0137200:CDS |
TGCGTCATGAGAAGCATTAT+AGG | 0.414289 | 1_3:-69504323 | Msa0137200:CDS |
GATCAGATGAGGACATGTTT+GGG | 0.414515 | 1_3:-69502818 | Msa0137200:CDS |
CGAAAGTATGAAACCCTATA+AGG | 0.416886 | 1_3:+69505111 | None:intergenic |
GTACGCACGATGTTGCATAT+TGG | 0.417861 | 1_3:-69504293 | Msa0137200:CDS |
CCAGCAACAGTTGCCACTCT+TGG | 0.421922 | 1_3:+69505797 | None:intergenic |
TCCCAACATTCTACTGCAAC+AGG | 0.422981 | 1_3:+69505067 | None:intergenic |
TCTGATAACAATGCAACAAA+AGG | 0.423959 | 1_3:-69502880 | Msa0137200:CDS |
TCCTGTTGCAGTAGAATGTT+GGG | 0.425459 | 1_3:-69505068 | Msa0137200:CDS |
AATGAGGGGAAAGGTTGTTC+TGG | 0.426046 | 1_3:-69504784 | Msa0137200:CDS |
ATCAGAACCAACACTGTTGT+TGG | 0.428130 | 1_3:+69505748 | None:intergenic |
CCAAAGAGAGTGCTCTGGTT+TGG | 0.428765 | 1_3:-69503615 | Msa0137200:CDS |
TCATGCGGCTCGCCGTCTTT+CGG | 0.430507 | 1_3:-69505839 | Msa0137200:CDS |
AAGTAATATTTGGCTTTGCT+TGG | 0.430940 | 1_3:+69502726 | None:intergenic |
CGGACGAAGGAAAAGGACTA+TGG | 0.431241 | 1_3:+69505192 | None:intergenic |
GATGTTGAAACAATCTATAT+TGG | 0.433844 | 1_3:-69505578 | Msa0137200:CDS |
GCGTAGCTTCTTGCAGGATC+TGG | 0.434843 | 1_3:-69504268 | Msa0137200:CDS |
AGGATTTCGAGTAATAGCTT+TGG | 0.436633 | 1_3:-69504190 | Msa0137200:CDS |
ACCCAAACAAAATCCTCATC+AGG | 0.437641 | 1_3:+69505290 | None:intergenic |
CGAATCGCGCCGCTTAATGA+TGG | 0.438856 | 1_3:+69504423 | None:intergenic |
TTGGGCGCGTAGCTTCTTGC+AGG | 0.441346 | 1_3:-69504274 | Msa0137200:CDS |
CAAGAAAGGATGATCATTGT+TGG | 0.442753 | 1_3:-69505707 | Msa0137200:CDS |
AAGGTCAAACTGTGATGCTT+GGG | 0.444131 | 1_3:-69504884 | Msa0137200:CDS |
CAAAAGAATCGCTCGGTGCT+TGG | 0.449492 | 1_3:+69504113 | None:intergenic |
CTTCCGCTGTCGCCTGATCT+CGG | 0.449506 | 1_3:-69505395 | Msa0137200:CDS |
TCACAGTTTGACCTTTGAAC+TGG | 0.450018 | 1_3:+69504892 | None:intergenic |
AACGACACATTTGGAAGGCC+TGG | 0.452363 | 1_3:-69504678 | Msa0137200:CDS |
GAAACATATACTAATGCTAT+TGG | 0.453760 | 1_3:-69502583 | Msa0137200:three_prime_UTR |
AACTAACATTCATTCATTCA+AGG | 0.456387 | 1_3:-69506444 | Msa0137200:intron |
GGAAAGAGGAAAATGGTAAG+TGG | 0.457394 | 1_3:-69505658 | Msa0137200:CDS |
TTTGTCTATAAAACCAGAAA+GGG | 0.457718 | 1_3:+69506590 | None:intergenic |
TCAAATCGACCACCGAGATC+AGG | 0.459599 | 1_3:+69505383 | None:intergenic |
GATTGTATCTAAGTTGTTGA+AGG | 0.461165 | 1_3:-69502466 | Msa0137200:three_prime_UTR |
TGGTAACCAGCTTCCATTGA+AGG | 0.461364 | 1_3:-69505687 | Msa0137200:CDS |
TTACAGCTGAAAGATGGTCT+TGG | 0.463158 | 1_3:-69505605 | Msa0137200:CDS |
AAGACCTATGTAGCCTCGCT+TGG | 0.466700 | 1_3:+69505031 | None:intergenic |
AGCAGTTTGTTCAGAAGCAT+TGG | 0.467175 | 1_3:+69502662 | None:intergenic |
AGATTTAACAGGGCAAGGCT+TGG | 0.467489 | 1_3:-69505224 | Msa0137200:CDS |
GACAAGCCATACTGAAGAAT+GGG | 0.468184 | 1_3:-69503734 | Msa0137200:CDS |
CAAGGAAACACGTCCGCAAT+GGG | 0.469994 | 1_3:+69502765 | None:intergenic |
CTACAAATGATATACTCATA+TGG | 0.471654 | 1_3:+69504540 | None:intergenic |
CTGGTGGTGTCTGAATTCAT+TGG | 0.473518 | 1_3:-69504453 | Msa0137200:CDS |
ATTTGATCGATCTCTTTGGC+AGG | 0.477042 | 1_3:-69505366 | Msa0137200:CDS |
AAAGGTCAAACTGTGATGCT+TGG | 0.478423 | 1_3:-69504885 | Msa0137200:CDS |
AAACTTATGCAACCGTGAAA+AGG | 0.479354 | 1_3:-69504704 | Msa0137200:CDS |
CATCCTCCATTTCTCAAGAA+AGG | 0.479386 | 1_3:-69505721 | Msa0137200:CDS |
CAATCCAAGCGAGGCTACAT+AGG | 0.479480 | 1_3:-69505035 | Msa0137200:CDS |
TTTGTGCCTTCAATGGAAGC+TGG | 0.479814 | 1_3:+69505681 | None:intergenic |
TTGTAGTATTTGTGAATACT+TGG | 0.480347 | 1_3:-69502555 | Msa0137200:three_prime_UTR |
TTAGAAAAGCTTGCTTAATG+AGG | 0.481570 | 1_3:+69502615 | None:intergenic |
TACATAGGTCTTGAGTACTA+TGG | 0.482799 | 1_3:-69505020 | Msa0137200:CDS |
CTCCTGTTGCAGTAGAATGT+TGG | 0.483716 | 1_3:-69505069 | Msa0137200:CDS |
TATATCTCGGACGAAGGAAA+AGG | 0.486903 | 1_3:+69505185 | None:intergenic |
GAATCGCGCCGCTTAATGAT+GGG | 0.487141 | 1_3:+69504424 | None:intergenic |
CGATACAACACTCCAGAGTT+GGG | 0.487205 | 1_3:-69504634 | Msa0137200:CDS |
GAGTGAGCAAAATGGCTTCA+AGG | 0.488129 | 1_3:-69505889 | Msa0137200:exon |
TCGGTAGTAGCAACAACGTT+GGG | 0.494104 | 1_3:+69502487 | None:intergenic |
AAGCGATTCTCTCCCAACTC+TGG | 0.499258 | 1_3:+69504622 | None:intergenic |
TGATGCTGTTGCTGAAGCTA+TGG | 0.500313 | 1_3:-69504382 | Msa0137200:CDS |
TTCAACAACTTAGATACAAT+CGG | 0.501980 | 1_3:+69502468 | None:intergenic |
ATGGTAAGTGGGAATTCACT+TGG | 0.502564 | 1_3:-69505646 | Msa0137200:CDS |
AAGCAAAGCCAAATATTACT+TGG | 0.502945 | 1_3:-69502724 | Msa0137200:CDS |
CTTGTTACAGCAGTGAGAGA+TGG | 0.504181 | 1_3:-69504576 | Msa0137200:CDS |
GACGTGTTTCCTTGCACCGT+TGG | 0.505796 | 1_3:-69502756 | Msa0137200:CDS |
TGGCCTATATGAATACCAAC+AGG | 0.508722 | 1_3:+69504972 | None:intergenic |
CATCTCTAACAGGAAGGGTT+CGG | 0.508766 | 1_3:+69505162 | None:intergenic |
AAGATTACAGGTGTGTATCC+AGG | 0.509121 | 1_3:+69504660 | None:intergenic |
TCGATACAACACTCCAGAGT+TGG | 0.509920 | 1_3:-69504635 | Msa0137200:CDS |
GGACAAGCCATACTGAAGAA+TGG | 0.510330 | 1_3:-69503735 | Msa0137200:CDS |
AGCTCAGGTGGAAGGAAAGT+TGG | 0.512723 | 1_3:+69505479 | None:intergenic |
GAAAGAGATTTAACAGGGCA+AGG | 0.513388 | 1_3:-69505229 | Msa0137200:CDS |
CTGATAACAATGCAACAAAA+GGG | 0.514427 | 1_3:-69502879 | Msa0137200:CDS |
GTGGGAATTCACTTGGGATG+AGG | 0.515265 | 1_3:-69505639 | Msa0137200:CDS |
ATGGAAACAGCTTCAGCACT+AGG | 0.515512 | 1_3:+69504045 | None:intergenic |
TTGTTGCAGGGTGTGAGTAA+GGG | 0.516408 | 1_3:-69502921 | Msa0137200:intron |
TTCTTCTCACGACCGAAAGA+CGG | 0.519257 | 1_3:+69505827 | None:intergenic |
GAGTGAGTGAGTGAGCAAAA+TGG | 0.520874 | 1_3:-69505897 | Msa0137200:exon |
ATTAGTATATGTTTCTTACA+TGG | 0.521029 | 1_3:+69502591 | None:intergenic |
TTCATACTTTCGACTATGCT+AGG | 0.522500 | 1_3:-69505100 | Msa0137200:CDS |
CTTCTTGCAGGATCTGGAAA+GGG | 0.524177 | 1_3:-69504262 | Msa0137200:CDS |
CTTGACATGAACCGAAATCT+CGG | 0.524650 | 1_3:+69503575 | None:intergenic |
GATAGTACTATGGTGCAGCC+TGG | 0.524793 | 1_3:-69504084 | Msa0137200:CDS |
TCATCTGAGGAGGAGATGCT+GGG | 0.527479 | 1_3:-69504229 | Msa0137200:CDS |
CATTGTGGAAGTTAAACCTC+AGG | 0.529575 | 1_3:-69503482 | Msa0137200:intron |
AGCATTAAGATTCTTCCTGT+TGG | 0.529787 | 1_3:-69504987 | Msa0137200:CDS |
TGAAGTAAGATCTAACAAGT+TGG | 0.532544 | 1_3:+69505859 | None:intergenic |
GAGCCTGTTTCAGTTAAAAG+TGG | 0.534096 | 1_3:-69503511 | Msa0137200:CDS |
GCAAACCCTGCTAGAGGCCG+CGG | 0.535783 | 1_3:-69504753 | Msa0137200:CDS |
GCAAGGAAACACGTCCGCAA+TGG | 0.535831 | 1_3:+69502764 | None:intergenic |
CCTTTCCGCGGCCTCTAGCA+GGG | 0.538093 | 1_3:+69504748 | None:intergenic |
AGTATTTGTGAATACTTGGT+TGG | 0.540615 | 1_3:-69502551 | Msa0137200:three_prime_UTR |
GGTGTTGCACTAATTGATCC+AGG | 0.542444 | 1_3:+69504066 | None:intergenic |
TTTACAACATGCTGAAATGA+GGG | 0.544384 | 1_3:-69504799 | Msa0137200:CDS |
GATTCATGACTGACTCAAGC+TGG | 0.544391 | 1_3:+69504952 | None:intergenic |
GGATTCCGCCTTAATGGTCC+CGG | 0.546381 | 1_3:-69504361 | Msa0137200:CDS |
CTTTCTTGAGAAATGGAGGA+TGG | 0.547660 | 1_3:+69505722 | None:intergenic |
GAAAGAGGAAAATGGTAAGT+GGG | 0.548871 | 1_3:-69505657 | Msa0137200:CDS |
TAGAATTTAGTGAAAAGCTC+AGG | 0.548984 | 1_3:+69505464 | None:intergenic |
AGAGAAACACTCTCACTGAA+TGG | 0.549371 | 1_3:-69503966 | Msa0137200:CDS |
TTTCGGTTCATGTCAAGCTA+AGG | 0.551647 | 1_3:-69503569 | Msa0137200:CDS |
CTTGGACTTGCTGCAGAACA+CGG | 0.553602 | 1_3:-69503925 | Msa0137200:CDS |
GATGACATGGATATCTTCAA+AGG | 0.559121 | 1_3:-69504858 | Msa0137200:CDS |
CATCCTTTCTTGAGAAATGG+AGG | 0.564155 | 1_3:+69505718 | None:intergenic |
GTTTAACTTCCACAATGTAT+GGG | 0.566536 | 1_3:+69503488 | None:intergenic |
ACTGCACAAGCTGTTCAAGA+TGG | 0.567111 | 1_3:+69504026 | None:intergenic |
TAGTGAAAAGCTCAGGTGGA+AGG | 0.568307 | 1_3:+69505471 | None:intergenic |
CATAATCCAAAAGAATCGCT+CGG | 0.569386 | 1_3:+69504106 | None:intergenic |
CCCTGCTAGAGGCCGCGGAA+AGG | 0.571655 | 1_3:-69504748 | Msa0137200:CDS |
GCTTCTTGCAGGATCTGGAA+AGG | 0.572169 | 1_3:-69504263 | Msa0137200:CDS |
ATTGAAGGCACAAAGGAAAG+AGG | 0.575033 | 1_3:-69505672 | Msa0137200:CDS |
GAAGTTCATCTCTAACAGGA+AGG | 0.577715 | 1_3:+69505156 | None:intergenic |
TTGTTAGATCTTACTTCATG+CGG | 0.579234 | 1_3:-69505854 | Msa0137200:CDS |
AATATTTGCTGATAAAGTGA+TGG | 0.579350 | 1_3:-69505324 | Msa0137200:CDS |
GGCTGCTCCCCATCATTAAG+CGG | 0.581670 | 1_3:-69504432 | Msa0137200:CDS |
TGCTTAATGAGGAGATAACT+GGG | 0.586765 | 1_3:+69502626 | None:intergenic |
TTGTTACAGCAGTGAGAGAT+GGG | 0.586812 | 1_3:-69504575 | Msa0137200:CDS |
CCACCGAGATCAGGCGACAG+CGG | 0.589419 | 1_3:+69505392 | None:intergenic |
GCGCGATTCGGGTGAATCCG+TGG | 0.589497 | 1_3:-69504410 | Msa0137200:CDS |
GATGCTTGGGGTGGATGACA+TGG | 0.591172 | 1_3:-69504871 | Msa0137200:CDS |
AGAGTCCAAAGAGAGTGCTC+TGG | 0.593330 | 1_3:-69503620 | Msa0137200:CDS |
GAAGAAAAGGCTTCCAAGAG+TGG | 0.594619 | 1_3:-69505810 | Msa0137200:CDS |
AGGAAGGGTTCGGTATATCT+CGG | 0.595173 | 1_3:+69505172 | None:intergenic |
TCTTTCTGAGACAGAAAGCA+AGG | 0.595405 | 1_3:-69504931 | Msa0137200:CDS |
TAAAAGTGGCCCATACATTG+TGG | 0.597276 | 1_3:-69503497 | Msa0137200:CDS |
AAGTTCATCTCTAACAGGAA+GGG | 0.599310 | 1_3:+69505157 | None:intergenic |
TTGGGGTAATAACAAGTGCA+AGG | 0.603403 | 1_3:-69502800 | Msa0137200:CDS |
TATCCAAAAGAAGAGCATGC+TGG | 0.604070 | 1_3:-69504472 | Msa0137200:CDS |
GAGTTAAGAAACCAGTTCAA+AGG | 0.606608 | 1_3:-69504903 | Msa0137200:CDS |
GATGAAACCAACAACAGTGT+TGG | 0.613941 | 1_3:-69505755 | Msa0137200:CDS |
GCAACAGCATCAATATTCCA+CGG | 0.614265 | 1_3:+69504393 | None:intergenic |
TGGTAAGTGGGAATTCACTT+GGG | 0.618013 | 1_3:-69505645 | Msa0137200:CDS |
GTTCGGTATATCTCGGACGA+AGG | 0.622286 | 1_3:+69505179 | None:intergenic |
ACATGCTGAAATGAGGGGAA+AGG | 0.622463 | 1_3:-69504793 | Msa0137200:CDS |
AATTTAGTGAAAAGCTCAGG+TGG | 0.623435 | 1_3:+69505467 | None:intergenic |
GGAAGTTATCAACCCTGATG+AGG | 0.625660 | 1_3:-69505303 | Msa0137200:CDS |
AAACTTTAGAAAGCTATCTG+TGG | 0.628781 | 1_3:-69504163 | Msa0137200:CDS |
AGCTTCCATTGAAGGCACAA+AGG | 0.630490 | 1_3:-69505679 | Msa0137200:CDS |
AATCGCGCCGCTTAATGATG+GGG | 0.632508 | 1_3:+69504425 | None:intergenic |
TGGGGTAATAACAAGTGCAA+GGG | 0.633008 | 1_3:-69502799 | Msa0137200:CDS |
TTACAACATGCTGAAATGAG+GGG | 0.634606 | 1_3:-69504798 | Msa0137200:CDS |
GGAAGCATGTAGTGAAACAA+AGG | 0.636066 | 1_3:+69505413 | None:intergenic |
CTTCTTGCACATCCTTTCCG+CGG | 0.637125 | 1_3:+69504736 | None:intergenic |
CCCAAACAAAATCCTCATCA+GGG | 0.640182 | 1_3:+69505291 | None:intergenic |
TGGTGATGACAGATCAGATG+AGG | 0.641223 | 1_3:-69502829 | Msa0137200:CDS |
GAGTATATCATTTGTAGACA+AGG | 0.642548 | 1_3:-69504534 | Msa0137200:CDS |
GGCATCTCTATCGCCCATTG+CGG | 0.645098 | 1_3:-69502778 | Msa0137200:CDS |
CATCTGAGGAGGAGATGCTG+GGG | 0.645178 | 1_3:-69504228 | Msa0137200:CDS |
TTTGAGAAAGAGATTTAACA+GGG | 0.647753 | 1_3:-69505234 | Msa0137200:CDS |
ATCGGTAGTAGCAACAACGT+TGG | 0.649041 | 1_3:+69502486 | None:intergenic |
CAAATCGCAAACCCTGCTAG+AGG | 0.649493 | 1_3:-69504759 | Msa0137200:CDS |
AATCGCTTACTATGCAATTG+CGG | 0.650771 | 1_3:-69504607 | Msa0137200:CDS |
ACATTCTACTGCAACAGGAG+AGG | 0.651128 | 1_3:+69505072 | None:intergenic |
CTTGTAGAGATCATCTGAGG+AGG | 0.654064 | 1_3:-69504239 | Msa0137200:CDS |
GGATAAACGACACATTTGGA+AGG | 0.660498 | 1_3:-69504683 | Msa0137200:CDS |
TTATATACAGAAACTACTGA+TGG | 0.662521 | 1_3:-69503652 | Msa0137200:CDS |
CCAAAAGAAGAGCATGCTGG+TGG | 0.662803 | 1_3:-69504469 | Msa0137200:CDS |
AGACTCCGGGACCATTAAGG+CGG | 0.664593 | 1_3:+69504356 | None:intergenic |
ATCAGATGAGGACATGTTTG+GGG | 0.667558 | 1_3:-69502817 | Msa0137200:CDS |
TCAAACTGTGATGCTTGGGG+TGG | 0.668780 | 1_3:-69504880 | Msa0137200:CDS |
ACGAAGGAAAAGGACTATGG+AGG | 0.674332 | 1_3:+69505195 | None:intergenic |
GGGCTTGTAGAGATCATCTG+AGG | 0.683476 | 1_3:-69504242 | Msa0137200:CDS |
ATGTTGGAAGAACCATCAAG+TGG | 0.693809 | 1_3:+69505258 | None:intergenic |
CCGCTGTCGCCTGATCTCGG+TGG | 0.698431 | 1_3:-69505392 | Msa0137200:CDS |
AGGTCAAACTGTGATGCTTG+GGG | 0.701625 | 1_3:-69504883 | Msa0137200:CDS |
ATTGCTTATCAATCCAAGCG+AGG | 0.704535 | 1_3:-69505044 | Msa0137200:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTTGTTTATTTATTTATTTC+TGG | - | chr1_3:69502691-69502710 | Msa0137200:CDS | 10.0% |
!! | TCTAAATATAATTTCTCATA+TGG | - | chr1_3:69502827-69502846 | Msa0137200:CDS | 15.0% |
!!! | AAATAAATTGTTTTCTTTGA+TGG | - | chr1_3:69505171-69505190 | Msa0137200:CDS | 15.0% |
!! | GATCTTTAGTTAAAATAAAA+AGG | - | chr1_3:69505621-69505640 | Msa0137200:CDS | 15.0% |
!! | GATAATGATTAATAATACTA+TGG | - | chr1_3:69505924-69505943 | Msa0137200:intron | 15.0% |
!!! | ATTATCATTCTCTTTTTAAT+AGG | - | chr1_3:69506581-69506600 | Msa0137200:five_prime_UTR | 15.0% |
!! | AAATAAATAAACAAATCACC+TGG | + | chr1_3:69502686-69502705 | None:intergenic | 20.0% |
!!! | ATTTATTTATTTCTGGTAGT+TGG | - | chr1_3:69502698-69502717 | Msa0137200:CDS | 20.0% |
!! | AAAATCAAATTAGAACCAAA+GGG | + | chr1_3:69502881-69502900 | None:intergenic | 20.0% |
!!! | AATTTATCCTTTTTTTTTCC+AGG | - | chr1_3:69505221-69505240 | Msa0137200:CDS | 20.0% |
!! | TTTGTATACTACTTATTGTT+GGG | - | chr1_3:69505591-69505610 | Msa0137200:CDS | 20.0% |
!! | ATTAAGAAACAGACATTTAT+CGG | + | chr1_3:69505689-69505708 | None:intergenic | 20.0% |
!! | TTGAAGTTAATTCTAATCTT+TGG | - | chr1_3:69505951-69505970 | Msa0137200:intron | 20.0% |
!! | AGTTCATTATCTTAGAAATA+AGG | + | chr1_3:69506000-69506019 | None:intergenic | 20.0% |
!! | ATTAGTATATGTTTCTTACA+TGG | + | chr1_3:69506389-69506408 | None:intergenic | 20.0% |
! | TTTGTCTATAAAACCAGAAA+GGG | + | chr1_3:69502390-69502409 | None:intergenic | 25.0% |
!! | TTTTGTCTATAAAACCAGAA+AGG | + | chr1_3:69502391-69502410 | None:intergenic | 25.0% |
!! | GTGTGTTGTGTTATTATTAA+CGG | - | chr1_3:69502476-69502495 | Msa0137200:three_prime_UTR | 25.0% |
! | AACTAACATTCATTCATTCA+AGG | - | chr1_3:69502533-69502552 | Msa0137200:three_prime_UTR | 25.0% |
! | TGAATAATGTAAACAGAAAG+AGG | + | chr1_3:69502615-69502634 | None:intergenic | 25.0% |
! | GAAAATCAAATTAGAACCAA+AGG | + | chr1_3:69502882-69502901 | None:intergenic | 25.0% |
! | CCATAAAAAAAGAAATTGCA+TGG | + | chr1_3:69502904-69502923 | None:intergenic | 25.0% |
!!! | CCATGCAATTTCTTTTTTTA+TGG | - | chr1_3:69502901-69502920 | Msa0137200:CDS | 25.0% |
! | GATGTTGAAACAATCTATAT+TGG | - | chr1_3:69503399-69503418 | Msa0137200:intron | 25.0% |
!! | CTTTTCACTAAATTCTATCA+TGG | - | chr1_3:69503519-69503538 | Msa0137200:CDS | 25.0% |
!! | AATATTTGCTGATAAAGTGA+TGG | - | chr1_3:69503653-69503672 | Msa0137200:CDS | 25.0% |
! | AATCTCTTTCTCAAAAATGT+TGG | + | chr1_3:69503738-69503757 | None:intergenic | 25.0% |
!!! | TTTTGAGAAAGAGATTTAAC+AGG | - | chr1_3:69503742-69503761 | Msa0137200:intron | 25.0% |
! | TTTGAGAAAGAGATTTAACA+GGG | - | chr1_3:69503743-69503762 | Msa0137200:intron | 25.0% |
! | CTACAAATGATATACTCATA+TGG | + | chr1_3:69504440-69504459 | None:intergenic | 25.0% |
! | TTTGGATTATGATAGTACTA+TGG | - | chr1_3:69504883-69504902 | Msa0137200:CDS | 25.0% |
! | TTTAAAAGAGTGAGTTCATT+TGG | + | chr1_3:69505124-69505143 | None:intergenic | 25.0% |
! | TTATATACAGAAACTACTGA+TGG | - | chr1_3:69505325-69505344 | Msa0137200:CDS | 25.0% |
!!! | ACTTTTTTATTACTAACCTG+AGG | + | chr1_3:69505514-69505533 | None:intergenic | 25.0% |
! | GTTTGTATACTACTTATTGT+TGG | - | chr1_3:69505590-69505609 | Msa0137200:CDS | 25.0% |
! | ATAAAAAGGATACTTGAATC+TGG | - | chr1_3:69505635-69505654 | Msa0137200:CDS | 25.0% |
! | TCATTATCTTAGAAATAAGG+AGG | + | chr1_3:69505997-69506016 | None:intergenic | 25.0% |
! | GAAACATATACTAATGCTAT+TGG | - | chr1_3:69506394-69506413 | Msa0137200:intron | 25.0% |
! | TTGTAGTATTTGTGAATACT+TGG | - | chr1_3:69506422-69506441 | Msa0137200:intron | 25.0% |
! | TTCAACAACTTAGATACAAT+CGG | + | chr1_3:69506512-69506531 | None:intergenic | 25.0% |
TGGTAATTAACACTGAATTG+GGG | + | chr1_3:69502666-69502685 | None:intergenic | 30.0% | |
CTGGTAATTAACACTGAATT+GGG | + | chr1_3:69502667-69502686 | None:intergenic | 30.0% | |
! | ATTTTGTCAATTCAACCCTT+TGG | - | chr1_3:69502863-69502882 | Msa0137200:CDS | 30.0% |
!!! | ATGCTAGTTTGCTAGTTTTT+TGG | - | chr1_3:69502982-69503001 | Msa0137200:intron | 30.0% |
!!! | AGTTGTATTTTTGCTGTTGT+AGG | - | chr1_3:69503048-69503067 | Msa0137200:intron | 30.0% |
TGAAGTAAGATCTAACAAGT+TGG | + | chr1_3:69503121-69503140 | None:intergenic | 30.0% | |
TTGTTAGATCTTACTTCATG+CGG | - | chr1_3:69503123-69503142 | Msa0137200:intron | 30.0% | |
TAGAATTTAGTGAAAAGCTC+AGG | + | chr1_3:69503516-69503535 | None:intergenic | 30.0% | |
GTTTCTGTAAACAACATCTA+TGG | - | chr1_3:69503541-69503560 | Msa0137200:CDS | 30.0% | |
TTCTGAATTCTGACCTTATA+GGG | - | chr1_3:69503853-69503872 | Msa0137200:intron | 30.0% | |
! | TTTTACAACATGCTGAAATG+AGG | - | chr1_3:69504177-69504196 | Msa0137200:CDS | 30.0% |
TTTACAACATGCTGAAATGA+GGG | - | chr1_3:69504178-69504197 | Msa0137200:CDS | 30.0% | |
AAAAGGATAAACGACACATT+TGG | - | chr1_3:69504290-69504309 | Msa0137200:CDS | 30.0% | |
GAGTATATCATTTGTAGACA+AGG | - | chr1_3:69504443-69504462 | Msa0137200:CDS | 30.0% | |
! | GAGAAGATAGATGAGATTTT+AGG | - | chr1_3:69504470-69504489 | Msa0137200:CDS | 30.0% |
!! | CAGATAGCTTTCTAAAGTTT+GGG | + | chr1_3:69504814-69504833 | None:intergenic | 30.0% |
!! | ACAGATAGCTTTCTAAAGTT+TGG | + | chr1_3:69504815-69504834 | None:intergenic | 30.0% |
! | AAACTTTAGAAAGCTATCTG+TGG | - | chr1_3:69504814-69504833 | Msa0137200:CDS | 30.0% |
ACATTGTTTCAGCTTATAAG+AGG | - | chr1_3:69504840-69504859 | Msa0137200:CDS | 30.0% | |
CACAATGAAAACACAATTCT+TGG | + | chr1_3:69504981-69505000 | None:intergenic | 30.0% | |
! | AATTGTGTTTTCATTGTGAG+TGG | - | chr1_3:69504983-69505002 | Msa0137200:CDS | 30.0% |
! | TTTTCTTCTTGTGAAAAGCT+TGG | - | chr1_3:69505034-69505053 | Msa0137200:CDS | 30.0% |
TTATGCATGAAAGAATGTTG+TGG | - | chr1_3:69505145-69505164 | Msa0137200:CDS | 30.0% | |
TCTGTATATAACTGCATAAC+TGG | + | chr1_3:69505316-69505335 | None:intergenic | 30.0% | |
! | GTTTAACTTCCACAATGTAT+GGG | + | chr1_3:69505492-69505511 | None:intergenic | 30.0% |
TCGTAGATCAAAGAAAATAG+CGG | + | chr1_3:69505874-69505893 | None:intergenic | 30.0% | |
! | TTGGTCATGAATTCTTTTGA+AGG | - | chr1_3:69505970-69505989 | Msa0137200:intron | 30.0% |
! | TGGTCATGAATTCTTTTGAA+GGG | - | chr1_3:69505971-69505990 | Msa0137200:intron | 30.0% |
TCTGATAACAATGCAACAAA+AGG | - | chr1_3:69506097-69506116 | Msa0137200:intron | 30.0% | |
CTGATAACAATGCAACAAAA+GGG | - | chr1_3:69506098-69506117 | Msa0137200:intron | 30.0% | |
!! | AAGTAATATTTGGCTTTGCT+TGG | + | chr1_3:69506254-69506273 | None:intergenic | 30.0% |
AAGCAAAGCCAAATATTACT+TGG | - | chr1_3:69506253-69506272 | Msa0137200:intron | 30.0% | |
TGTGTCTTCCAAGTAATATT+TGG | + | chr1_3:69506264-69506283 | None:intergenic | 30.0% | |
! | TTAGAAAAGCTTGCTTAATG+AGG | + | chr1_3:69506365-69506384 | None:intergenic | 30.0% |
AGTATTTGTGAATACTTGGT+TGG | - | chr1_3:69506426-69506445 | Msa0137200:intron | 30.0% | |
GTTGGGATTAGAGATAAAAA+TGG | + | chr1_3:69506476-69506495 | None:intergenic | 30.0% | |
GATTGTATCTAAGTTGTTGA+AGG | - | chr1_3:69506511-69506530 | Msa0137200:five_prime_UTR | 30.0% | |
TAACGGAGAAGAAGAATCTT+TGG | - | chr1_3:69502493-69502512 | Msa0137200:three_prime_UTR | 35.0% | |
!! | ATTCAAGGTTAGCTTAGCTT+AGG | - | chr1_3:69502548-69502567 | Msa0137200:three_prime_UTR | 35.0% |
!!! | GAAGAGTTTTAGAAGAGCAA+TGG | + | chr1_3:69502590-69502609 | None:intergenic | 35.0% |
CCTGGTAATTAACACTGAAT+TGG | + | chr1_3:69502668-69502687 | None:intergenic | 35.0% | |
CCAATTCAGTGTTAATTACC+AGG | - | chr1_3:69502665-69502684 | Msa0137200:CDS | 35.0% | |
GATCATCCTTTCTTGAGAAA+TGG | + | chr1_3:69503265-69503284 | None:intergenic | 35.0% | |
CAAGAAAGGATGATCATTGT+TGG | - | chr1_3:69503270-69503289 | Msa0137200:intron | 35.0% | |
GAAAGAGGAAAATGGTAAGT+GGG | - | chr1_3:69503320-69503339 | Msa0137200:intron | 35.0% | |
! | CTTCTTTTACAGCTGAAAGA+TGG | - | chr1_3:69503366-69503385 | Msa0137200:intron | 35.0% |
AATTTAGTGAAAAGCTCAGG+TGG | + | chr1_3:69503513-69503532 | None:intergenic | 35.0% | |
AAGTTCATCTCTAACAGGAA+GGG | + | chr1_3:69503823-69503842 | None:intergenic | 35.0% | |
CTAAGAAGTTCATCTCTAAC+AGG | + | chr1_3:69503828-69503847 | None:intergenic | 35.0% | |
CTTCTGAATTCTGACCTTAT+AGG | - | chr1_3:69503852-69503871 | Msa0137200:intron | 35.0% | |
! | CGAAAGTATGAAACCCTATA+AGG | + | chr1_3:69503869-69503888 | None:intergenic | 35.0% |
TTCATACTTTCGACTATGCT+AGG | - | chr1_3:69503877-69503896 | Msa0137200:intron | 35.0% | |
TACATAGGTCTTGAGTACTA+TGG | - | chr1_3:69503957-69503976 | Msa0137200:CDS | 35.0% | |
AGCATTAAGATTCTTCCTGT+TGG | - | chr1_3:69503990-69504009 | Msa0137200:CDS | 35.0% | |
CTTCCTGTTGGTATTCATAT+AGG | - | chr1_3:69504002-69504021 | Msa0137200:CDS | 35.0% | |
GAGTTAAGAAACCAGTTCAA+AGG | - | chr1_3:69504074-69504093 | Msa0137200:CDS | 35.0% | |
GATGACATGGATATCTTCAA+AGG | - | chr1_3:69504119-69504138 | Msa0137200:CDS | 35.0% | |
! | AGGCATCAGCTTAAAACTTT+TGG | - | chr1_3:69504139-69504158 | Msa0137200:CDS | 35.0% |
! | CAGCTTAAAACTTTTGGCAA+TGG | - | chr1_3:69504145-69504164 | Msa0137200:CDS | 35.0% |
TTACAACATGCTGAAATGAG+GGG | - | chr1_3:69504179-69504198 | Msa0137200:CDS | 35.0% | |
AAACTTATGCAACCGTGAAA+AGG | - | chr1_3:69504273-69504292 | Msa0137200:CDS | 35.0% | |
!!! | TGTGTCGTTTATCCTTTTCA+CGG | + | chr1_3:69504288-69504307 | None:intergenic | 35.0% |
! | GTTGTATCGATCAAGATTAC+AGG | + | chr1_3:69504332-69504351 | None:intergenic | 35.0% |
AATCGCTTACTATGCAATTG+CGG | - | chr1_3:69504370-69504389 | Msa0137200:CDS | 35.0% | |
! | AGGATTTCGAGTAATAGCTT+TGG | - | chr1_3:69504787-69504806 | Msa0137200:CDS | 35.0% |
CATAATCCAAAAGAATCGCT+CGG | + | chr1_3:69504874-69504893 | None:intergenic | 35.0% | |
! | TGTTTTCATTGTGAGTGGAA+AGG | - | chr1_3:69504988-69505007 | Msa0137200:CDS | 35.0% |
GAGTGAGTTCATTTGGTATA+AGG | + | chr1_3:69505117-69505136 | None:intergenic | 35.0% | |
TTCTTTGATGGAGATTGCTT+AGG | - | chr1_3:69505183-69505202 | Msa0137200:CDS | 35.0% | |
AGATTGCTTAGGCAGTTAAA+CGG | - | chr1_3:69505194-69505213 | Msa0137200:CDS | 35.0% | |
ATCTGTTTCCAGTCAAAATC+AGG | + | chr1_3:69505286-69505305 | None:intergenic | 35.0% | |
TAAGGAACTTCTTGATCATC+TGG | - | chr1_3:69505426-69505445 | Msa0137200:CDS | 35.0% | |
! | GGTTTAACTTCCACAATGTA+TGG | + | chr1_3:69505493-69505512 | None:intergenic | 35.0% |
! | CACTTGACATTTTTGTTGCA+GGG | - | chr1_3:69506044-69506063 | Msa0137200:intron | 35.0% |
CCAATGCATAGAACAAAATC+TGG | + | chr1_3:69506131-69506150 | None:intergenic | 35.0% | |
! | CCAGATTTTGTTCTATGCAT+TGG | - | chr1_3:69506128-69506147 | Msa0137200:intron | 35.0% |
!! | TTTGCTTGGTTTTTGACCAA+CGG | + | chr1_3:69506240-69506259 | None:intergenic | 35.0% |
! | AAGACACAAGTGAGATTTTG+AGG | - | chr1_3:69506276-69506295 | Msa0137200:intron | 35.0% |
TGCTTAATGAGGAGATAACT+GGG | + | chr1_3:69506354-69506373 | None:intergenic | 35.0% | |
TTGCTTAATGAGGAGATAAC+TGG | + | chr1_3:69506355-69506374 | None:intergenic | 35.0% | |
! | CTTGGTTGGTTATCTTGTAT+TGG | - | chr1_3:69506440-69506459 | Msa0137200:intron | 35.0% |
CTGAATTGGGGCAATGTTTA+AGG | + | chr1_3:69502654-69502673 | None:intergenic | 40.0% | |
GATGAAACCAACAACAGTGT+TGG | - | chr1_3:69503222-69503241 | Msa0137200:intron | 40.0% | |
ATCAGAACCAACACTGTTGT+TGG | + | chr1_3:69503232-69503251 | None:intergenic | 40.0% | |
CTTTCTTGAGAAATGGAGGA+TGG | + | chr1_3:69503258-69503277 | None:intergenic | 40.0% | |
CATCCTCCATTTCTCAAGAA+AGG | - | chr1_3:69503256-69503275 | Msa0137200:intron | 40.0% | |
CATCCTTTCTTGAGAAATGG+AGG | + | chr1_3:69503262-69503281 | None:intergenic | 40.0% | |
TCTTTCCTTTGTGCCTTCAA+TGG | + | chr1_3:69503306-69503325 | None:intergenic | 40.0% | |
! | ATTGAAGGCACAAAGGAAAG+AGG | - | chr1_3:69503305-69503324 | Msa0137200:intron | 40.0% |
GCACAAAGGAAAGAGGAAAA+TGG | - | chr1_3:69503312-69503331 | Msa0137200:intron | 40.0% | |
GGAAAGAGGAAAATGGTAAG+TGG | - | chr1_3:69503319-69503338 | Msa0137200:intron | 40.0% | |
ATGGTAAGTGGGAATTCACT+TGG | - | chr1_3:69503331-69503350 | Msa0137200:intron | 40.0% | |
TGGTAAGTGGGAATTCACTT+GGG | - | chr1_3:69503332-69503351 | Msa0137200:intron | 40.0% | |
TTACAGCTGAAAGATGGTCT+TGG | - | chr1_3:69503372-69503391 | Msa0137200:intron | 40.0% | |
GCAACATCATCTTGCTCAAT+TGG | + | chr1_3:69503447-69503466 | None:intergenic | 40.0% | |
! | GGAAGCATGTAGTGAAACAA+AGG | + | chr1_3:69503567-69503586 | None:intergenic | 40.0% |
!! | GTCGATTTGATCGATCTCTT+TGG | - | chr1_3:69503607-69503626 | Msa0137200:CDS | 40.0% |
ATTTGATCGATCTCTTTGGC+AGG | - | chr1_3:69503611-69503630 | Msa0137200:CDS | 40.0% | |
! | ACCCTGATGAGGATTTTGTT+TGG | - | chr1_3:69503685-69503704 | Msa0137200:CDS | 40.0% |
CCCAAACAAAATCCTCATCA+GGG | + | chr1_3:69503689-69503708 | None:intergenic | 40.0% | |
!! | CCCTGATGAGGATTTTGTTT+GGG | - | chr1_3:69503686-69503705 | Msa0137200:CDS | 40.0% |
ACCCAAACAAAATCCTCATC+AGG | + | chr1_3:69503690-69503709 | None:intergenic | 40.0% | |
ATGTTGGAAGAACCATCAAG+TGG | + | chr1_3:69503722-69503741 | None:intergenic | 40.0% | |
GAAAGAGATTTAACAGGGCA+AGG | - | chr1_3:69503748-69503767 | Msa0137200:intron | 40.0% | |
TATATCTCGGACGAAGGAAA+AGG | + | chr1_3:69503795-69503814 | None:intergenic | 40.0% | |
GAAGTTCATCTCTAACAGGA+AGG | + | chr1_3:69503824-69503843 | None:intergenic | 40.0% | |
TCCTGTTGCAGTAGAATGTT+GGG | - | chr1_3:69503909-69503928 | Msa0137200:intron | 40.0% | |
ATTGCTTATCAATCCAAGCG+AGG | - | chr1_3:69503933-69503952 | Msa0137200:CDS | 40.0% | |
TGGCCTATATGAATACCAAC+AGG | + | chr1_3:69504008-69504027 | None:intergenic | 40.0% | |
!! | TCTTTCTGAGACAGAAAGCA+AGG | - | chr1_3:69504046-69504065 | Msa0137200:CDS | 40.0% |
TCACAGTTTGACCTTTGAAC+TGG | + | chr1_3:69504088-69504107 | None:intergenic | 40.0% | |
AAAGGTCAAACTGTGATGCT+TGG | - | chr1_3:69504092-69504111 | Msa0137200:CDS | 40.0% | |
AAGGTCAAACTGTGATGCTT+GGG | - | chr1_3:69504093-69504112 | Msa0137200:CDS | 40.0% | |
GGATAAACGACACATTTGGA+AGG | - | chr1_3:69504294-69504313 | Msa0137200:CDS | 40.0% | |
AAGATTACAGGTGTGTATCC+AGG | + | chr1_3:69504320-69504339 | None:intergenic | 40.0% | |
TTGTTACAGCAGTGAGAGAT+GGG | - | chr1_3:69504402-69504421 | Msa0137200:CDS | 40.0% | |
! | TATCCAAAAGAAGAGCATGC+TGG | - | chr1_3:69504505-69504524 | Msa0137200:CDS | 40.0% |
GCAACAGCATCAATATTCCA+CGG | + | chr1_3:69504587-69504606 | None:intergenic | 40.0% | |
!! | GCATATGTTTTTCAGACTCC+GGG | + | chr1_3:69504637-69504656 | None:intergenic | 40.0% |
!! | CGCATATGTTTTTCAGACTC+CGG | + | chr1_3:69504638-69504657 | None:intergenic | 40.0% |
!! | TGCGTCATGAGAAGCATTAT+AGG | - | chr1_3:69504654-69504673 | Msa0137200:CDS | 40.0% |
TACGCACGATGTTGCATATT+GGG | - | chr1_3:69504685-69504704 | Msa0137200:CDS | 40.0% | |
!!! | TGGGGAATTGGTTTTGGTTT+AGG | - | chr1_3:69504767-69504786 | Msa0137200:CDS | 40.0% |
AGAGAAACACTCTCACTGAA+TGG | - | chr1_3:69505011-69505030 | Msa0137200:CDS | 40.0% | |
! | GGTATAAGGAGTATGACACA+AGG | + | chr1_3:69505103-69505122 | None:intergenic | 40.0% |
GGCTTGTCCTGGAAAAAAAA+AGG | + | chr1_3:69505231-69505250 | None:intergenic | 40.0% | |
GACAAGCCATACTGAAGAAT+GGG | - | chr1_3:69505243-69505262 | Msa0137200:CDS | 40.0% | |
AAGCTTCCCATTCTTCAGTA+TGG | + | chr1_3:69505252-69505271 | None:intergenic | 40.0% | |
!! | TTTCTGTGCCTGATTTTGAC+TGG | - | chr1_3:69505275-69505294 | Msa0137200:CDS | 40.0% |
GAATTTGCAGACCGAGATTT+CGG | - | chr1_3:69505391-69505410 | Msa0137200:CDS | 40.0% | |
CTTGACATGAACCGAAATCT+CGG | + | chr1_3:69505405-69505424 | None:intergenic | 40.0% | |
TTTCGGTTCATGTCAAGCTA+AGG | - | chr1_3:69505408-69505427 | Msa0137200:CDS | 40.0% | |
GAGCCTGTTTCAGTTAAAAG+TGG | - | chr1_3:69505466-69505485 | Msa0137200:CDS | 40.0% | |
TAAAAGTGGCCCATACATTG+TGG | - | chr1_3:69505480-69505499 | Msa0137200:CDS | 40.0% | |
CATTGTGGAAGTTAAACCTC+AGG | - | chr1_3:69505495-69505514 | Msa0137200:CDS | 40.0% | |
AACCATGTTACGCTAGCATA+TGG | - | chr1_3:69505663-69505682 | Msa0137200:CDS | 40.0% | |
TGATCTACGATTGACAACAC+TGG | - | chr1_3:69505884-69505903 | Msa0137200:exon | 40.0% | |
CCTGCAACAAAAATGTCAAG+TGG | + | chr1_3:69506046-69506065 | None:intergenic | 40.0% | |
! | CCACTTGACATTTTTGTTGC+AGG | - | chr1_3:69506043-69506062 | Msa0137200:intron | 40.0% |
AGATCAGATGAGGACATGTT+TGG | - | chr1_3:69506158-69506177 | Msa0137200:intron | 40.0% | |
GATCAGATGAGGACATGTTT+GGG | - | chr1_3:69506159-69506178 | Msa0137200:intron | 40.0% | |
ATCAGATGAGGACATGTTTG+GGG | - | chr1_3:69506160-69506179 | Msa0137200:intron | 40.0% | |
TTGGGGTAATAACAAGTGCA+AGG | - | chr1_3:69506177-69506196 | Msa0137200:intron | 40.0% | |
TGGGGTAATAACAAGTGCAA+GGG | - | chr1_3:69506178-69506197 | Msa0137200:intron | 40.0% | |
!! | GAGATTTTGAGGATGTTGCA+AGG | - | chr1_3:69506287-69506306 | Msa0137200:intron | 40.0% |
! | AGCAGTTTGTTCAGAAGCAT+TGG | + | chr1_3:69506318-69506337 | None:intergenic | 40.0% |
GAGTGAGTGAGTGAGCAAAA+TGG | - | chr1_3:69503080-69503099 | Msa0137200:intron | 45.0% | |
GAGTGAGCAAAATGGCTTCA+AGG | - | chr1_3:69503088-69503107 | Msa0137200:intron | 45.0% | |
TTCTTCTCACGACCGAAAGA+CGG | + | chr1_3:69503153-69503172 | None:intergenic | 45.0% | |
CTTTCGGTCGTGAGAAGAAA+AGG | - | chr1_3:69503154-69503173 | Msa0137200:intron | 45.0% | |
GAAGAAAAGGCTTCCAAGAG+TGG | - | chr1_3:69503167-69503186 | Msa0137200:intron | 45.0% | |
TGGTAACCAGCTTCCATTGA+AGG | - | chr1_3:69503290-69503309 | Msa0137200:intron | 45.0% | |
TTTGTGCCTTCAATGGAAGC+TGG | + | chr1_3:69503299-69503318 | None:intergenic | 45.0% | |
! | AGCTTCCATTGAAGGCACAA+AGG | - | chr1_3:69503298-69503317 | Msa0137200:intron | 45.0% |
TAGTGAAAAGCTCAGGTGGA+AGG | + | chr1_3:69503509-69503528 | None:intergenic | 45.0% | |
GGAAGTTATCAACCCTGATG+AGG | - | chr1_3:69503674-69503693 | Msa0137200:CDS | 45.0% | |
GGTTCATGACTACCACTTGA+TGG | - | chr1_3:69503707-69503726 | Msa0137200:CDS | 45.0% | |
AGATTTAACAGGGCAAGGCT+TGG | - | chr1_3:69503753-69503772 | Msa0137200:intron | 45.0% | |
ACGAAGGAAAAGGACTATGG+AGG | + | chr1_3:69503785-69503804 | None:intergenic | 45.0% | |
! | AGGAAGGGTTCGGTATATCT+CGG | + | chr1_3:69503808-69503827 | None:intergenic | 45.0% |
CATCTCTAACAGGAAGGGTT+CGG | + | chr1_3:69503818-69503837 | None:intergenic | 45.0% | |
ACATTCTACTGCAACAGGAG+AGG | + | chr1_3:69503908-69503927 | None:intergenic | 45.0% | |
CTCCTGTTGCAGTAGAATGT+TGG | - | chr1_3:69503908-69503927 | Msa0137200:intron | 45.0% | |
TCCCAACATTCTACTGCAAC+AGG | + | chr1_3:69503913-69503932 | None:intergenic | 45.0% | |
! | GATTCATGACTGACTCAAGC+TGG | + | chr1_3:69504028-69504047 | None:intergenic | 45.0% |
AGGTCAAACTGTGATGCTTG+GGG | - | chr1_3:69504094-69504113 | Msa0137200:CDS | 45.0% | |
ACATGCTGAAATGAGGGGAA+AGG | - | chr1_3:69504184-69504203 | Msa0137200:CDS | 45.0% | |
AATGAGGGGAAAGGTTGTTC+TGG | - | chr1_3:69504193-69504212 | Msa0137200:CDS | 45.0% | |
TCGATACAACACTCCAGAGT+TGG | - | chr1_3:69504342-69504361 | Msa0137200:CDS | 45.0% | |
CGATACAACACTCCAGAGTT+GGG | - | chr1_3:69504343-69504362 | Msa0137200:CDS | 45.0% | |
CTTGTTACAGCAGTGAGAGA+TGG | - | chr1_3:69504401-69504420 | Msa0137200:CDS | 45.0% | |
! | CTGGTGGTGTCTGAATTCAT+TGG | - | chr1_3:69504524-69504543 | Msa0137200:CDS | 45.0% |
TGATGCTGTTGCTGAAGCTA+TGG | - | chr1_3:69504595-69504614 | Msa0137200:CDS | 45.0% | |
AGCTATGGATTCCGCCTTAA+TGG | - | chr1_3:69504610-69504629 | Msa0137200:CDS | 45.0% | |
GTACGCACGATGTTGCATAT+TGG | - | chr1_3:69504684-69504703 | Msa0137200:CDS | 45.0% | |
CTTCTTGCAGGATCTGGAAA+GGG | - | chr1_3:69504715-69504734 | Msa0137200:CDS | 45.0% | |
CTTGTAGAGATCATCTGAGG+AGG | - | chr1_3:69504738-69504757 | Msa0137200:CDS | 45.0% | |
!! | AGATGCTGGGGAATTGGTTT+TGG | - | chr1_3:69504761-69504780 | Msa0137200:CDS | 45.0% |
! | GGTGTTGCACTAATTGATCC+AGG | + | chr1_3:69504914-69504933 | None:intergenic | 45.0% |
ATGGAAACAGCTTCAGCACT+AGG | + | chr1_3:69504935-69504954 | None:intergenic | 45.0% | |
ACTGCACAAGCTGTTCAAGA+TGG | + | chr1_3:69504954-69504973 | None:intergenic | 45.0% | |
! | TTCTTCAGTATGGCTTGTCC+TGG | + | chr1_3:69505242-69505261 | None:intergenic | 45.0% |
GGACAAGCCATACTGAAGAA+TGG | - | chr1_3:69505242-69505261 | Msa0137200:CDS | 45.0% | |
!!! | GGGCCACTTTTAACTGAAAC+AGG | + | chr1_3:69505472-69505491 | None:intergenic | 45.0% |
TGCTAGCGTAACATGGTTCT+AGG | + | chr1_3:69505661-69505680 | None:intergenic | 45.0% | |
ATAGTAGCGCTACAACGTAG+TGG | - | chr1_3:69505735-69505754 | Msa0137200:CDS | 45.0% | |
!! | CAACACTGGCTTGAAGTAGT+TGG | - | chr1_3:69505898-69505917 | Msa0137200:exon | 45.0% |
TTTGTTGCAGGGTGTGAGTA+AGG | - | chr1_3:69506055-69506074 | Msa0137200:intron | 45.0% | |
TTGTTGCAGGGTGTGAGTAA+GGG | - | chr1_3:69506056-69506075 | Msa0137200:intron | 45.0% | |
! | TGGTGATGACAGATCAGATG+AGG | - | chr1_3:69506148-69506167 | Msa0137200:intron | 45.0% |
TCGGTAGTAGCAACAACGTT+GGG | + | chr1_3:69506493-69506512 | None:intergenic | 45.0% | |
ATCGGTAGTAGCAACAACGT+TGG | + | chr1_3:69506494-69506513 | None:intergenic | 45.0% | |
GTGGGAATTCACTTGGGATG+AGG | - | chr1_3:69503338-69503357 | Msa0137200:intron | 50.0% | |
AGCTCAGGTGGAAGGAAAGT+TGG | + | chr1_3:69503501-69503520 | None:intergenic | 50.0% | |
TCAAATCGACCACCGAGATC+AGG | + | chr1_3:69503597-69503616 | None:intergenic | 50.0% | |
CGGACGAAGGAAAAGGACTA+TGG | + | chr1_3:69503788-69503807 | None:intergenic | 50.0% | |
GTTCGGTATATCTCGGACGA+AGG | + | chr1_3:69503801-69503820 | None:intergenic | 50.0% | |
CAATCCAAGCGAGGCTACAT+AGG | - | chr1_3:69503942-69503961 | Msa0137200:CDS | 50.0% | |
AAGACCTATGTAGCCTCGCT+TGG | + | chr1_3:69503949-69503968 | None:intergenic | 50.0% | |
TCAAACTGTGATGCTTGGGG+TGG | - | chr1_3:69504097-69504116 | Msa0137200:CDS | 50.0% | |
CAAATCGCAAACCCTGCTAG+AGG | - | chr1_3:69504218-69504237 | Msa0137200:CDS | 50.0% | |
CTTCTTGCACATCCTTTCCG+CGG | + | chr1_3:69504244-69504263 | None:intergenic | 50.0% | |
AACGACACATTTGGAAGGCC+TGG | - | chr1_3:69504299-69504318 | Msa0137200:CDS | 50.0% | |
AAGCGATTCTCTCCCAACTC+TGG | + | chr1_3:69504358-69504377 | None:intergenic | 50.0% | |
! | CCACCAGCATGCTCTTCTTT+TGG | + | chr1_3:69504511-69504530 | None:intergenic | 50.0% |
! | CCAAAAGAAGAGCATGCTGG+TGG | - | chr1_3:69504508-69504527 | Msa0137200:CDS | 50.0% |
AATCGCGCCGCTTAATGATG+GGG | + | chr1_3:69504555-69504574 | None:intergenic | 50.0% | |
GAATCGCGCCGCTTAATGAT+GGG | + | chr1_3:69504556-69504575 | None:intergenic | 50.0% | |
CATCATTAAGCGGCGCGATT+CGG | - | chr1_3:69504555-69504574 | Msa0137200:CDS | 50.0% | |
ATCATTAAGCGGCGCGATTC+GGG | - | chr1_3:69504556-69504575 | Msa0137200:CDS | 50.0% | |
TTCAGACTCCGGGACCATTA+AGG | + | chr1_3:69504627-69504646 | None:intergenic | 50.0% | |
GCTTCTTGCAGGATCTGGAA+AGG | - | chr1_3:69504714-69504733 | Msa0137200:CDS | 50.0% | |
GGGCTTGTAGAGATCATCTG+AGG | - | chr1_3:69504735-69504754 | Msa0137200:CDS | 50.0% | |
ATCATCTGAGGAGGAGATGC+TGG | - | chr1_3:69504747-69504766 | Msa0137200:CDS | 50.0% | |
TCATCTGAGGAGGAGATGCT+GGG | - | chr1_3:69504748-69504767 | Msa0137200:CDS | 50.0% | |
!! | CAAAAGAATCGCTCGGTGCT+TGG | + | chr1_3:69504867-69504886 | None:intergenic | 50.0% |
!!! | CAAGCACCGAGCGATTCTTT+TGG | - | chr1_3:69504865-69504884 | Msa0137200:CDS | 50.0% |
GATAGTACTATGGTGCAGCC+TGG | - | chr1_3:69504893-69504912 | Msa0137200:CDS | 50.0% | |
!! | CTTGGACTTGCTGCAGAACA+CGG | - | chr1_3:69505052-69505071 | Msa0137200:CDS | 50.0% |
!! | AGAGTCCAAAGAGAGTGCTC+TGG | - | chr1_3:69505357-69505376 | Msa0137200:CDS | 50.0% |
! | CCAAACCAGAGCACTCTCTT+TGG | + | chr1_3:69505365-69505384 | None:intergenic | 50.0% |
!! | CCAAAGAGAGTGCTCTGGTT+TGG | - | chr1_3:69505362-69505381 | Msa0137200:CDS | 50.0% |
GGCCATATGCTAGCGTAACA+TGG | + | chr1_3:69505668-69505687 | None:intergenic | 50.0% | |
CAAGGAAACACGTCCGCAAT+GGG | + | chr1_3:69506215-69506234 | None:intergenic | 50.0% | |
! | GGTTTTTGACCAACGGTGCA+AGG | + | chr1_3:69506233-69506252 | None:intergenic | 50.0% |
CCAGCAACAGTTGCCACTCT+TGG | + | chr1_3:69503183-69503202 | None:intergenic | 55.0% | |
CCAAGAGTGGCAACTGTTGC+TGG | - | chr1_3:69503180-69503199 | Msa0137200:intron | 55.0% | |
GATGCTTGGGGTGGATGACA+TGG | - | chr1_3:69504106-69504125 | Msa0137200:CDS | 55.0% | |
GGCTGCTCCCCATCATTAAG+CGG | - | chr1_3:69504545-69504564 | Msa0137200:CDS | 55.0% | |
CGAATCGCGCCGCTTAATGA+TGG | + | chr1_3:69504557-69504576 | None:intergenic | 55.0% | |
GGATTCCGCCTTAATGGTCC+CGG | - | chr1_3:69504616-69504635 | Msa0137200:CDS | 55.0% | |
AGACTCCGGGACCATTAAGG+CGG | + | chr1_3:69504624-69504643 | None:intergenic | 55.0% | |
GCGTAGCTTCTTGCAGGATC+TGG | - | chr1_3:69504709-69504728 | Msa0137200:CDS | 55.0% | |
CATCTGAGGAGGAGATGCTG+GGG | - | chr1_3:69504749-69504768 | Msa0137200:CDS | 55.0% | |
AGGAGGAGATGCTGGGGAAT+TGG | - | chr1_3:69504755-69504774 | Msa0137200:CDS | 55.0% | |
GGCATCTCTATCGCCCATTG+CGG | - | chr1_3:69506199-69506218 | Msa0137200:intron | 55.0% | |
GCAAGGAAACACGTCCGCAA+TGG | + | chr1_3:69506216-69506235 | None:intergenic | 55.0% | |
GACGTGTTTCCTTGCACCGT+TGG | - | chr1_3:69506221-69506240 | Msa0137200:intron | 55.0% | |
TCATGCGGCTCGCCGTCTTT+CGG | - | chr1_3:69503138-69503157 | Msa0137200:intron | 60.0% | |
CTTCCGCTGTCGCCTGATCT+CGG | - | chr1_3:69503582-69503601 | Msa0137200:CDS | 60.0% | |
TTGGGCGCGTAGCTTCTTGC+AGG | - | chr1_3:69504703-69504722 | Msa0137200:CDS | 60.0% | |
CCACCGAGATCAGGCGACAG+CGG | + | chr1_3:69503588-69503607 | None:intergenic | 65.0% | |
GCAAACCCTGCTAGAGGCCG+CGG | - | chr1_3:69504224-69504243 | Msa0137200:CDS | 65.0% | |
CCTTTCCGCGGCCTCTAGCA+GGG | + | chr1_3:69504232-69504251 | None:intergenic | 65.0% | |
TCCTTTCCGCGGCCTCTAGC+AGG | + | chr1_3:69504233-69504252 | None:intergenic | 65.0% | |
! | GCGCGATTCGGGTGAATCCG+TGG | - | chr1_3:69504567-69504586 | Msa0137200:CDS | 65.0% |
CCGCTGTCGCCTGATCTCGG+TGG | - | chr1_3:69503585-69503604 | Msa0137200:CDS | 70.0% | |
CCCTGCTAGAGGCCGCGGAA+AGG | - | chr1_3:69504229-69504248 | Msa0137200:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_3 | gene | 69502379 | 69506620 | 69502379 | ID=Msa0137200;Name=Msa0137200 |
chr1_3 | mRNA | 69502379 | 69506620 | 69502379 | ID=Msa0137200-mRNA-1;Parent=Msa0137200;Name=Msa0137200-mRNA-1;_AED=0.03;_eAED=0.03;_QI=205|1|1|1|0.66|0.5|4|250|855 |
chr1_3 | exon | 69502379 | 69502934 | 69502379 | ID=Msa0137200-mRNA-1:exon:24076;Parent=Msa0137200-mRNA-1 |
chr1_3 | exon | 69503483 | 69503756 | 69503483 | ID=Msa0137200-mRNA-1:exon:24075;Parent=Msa0137200-mRNA-1 |
chr1_3 | exon | 69503913 | 69505929 | 69503913 | ID=Msa0137200-mRNA-1:exon:24074;Parent=Msa0137200-mRNA-1 |
chr1_3 | exon | 69506445 | 69506620 | 69506445 | ID=Msa0137200-mRNA-1:exon:24073;Parent=Msa0137200-mRNA-1 |
chr1_3 | five_prime_UTR | 69506445 | 69506620 | 69506445 | ID=Msa0137200-mRNA-1:five_prime_utr;Parent=Msa0137200-mRNA-1 |
chr1_3 | five_prime_UTR | 69505901 | 69505929 | 69505901 | ID=Msa0137200-mRNA-1:five_prime_utr;Parent=Msa0137200-mRNA-1 |
chr1_3 | CDS | 69503913 | 69505900 | 69503913 | ID=Msa0137200-mRNA-1:cds;Parent=Msa0137200-mRNA-1 |
chr1_3 | CDS | 69503483 | 69503756 | 69503483 | ID=Msa0137200-mRNA-1:cds;Parent=Msa0137200-mRNA-1 |
chr1_3 | CDS | 69502629 | 69502934 | 69502629 | ID=Msa0137200-mRNA-1:cds;Parent=Msa0137200-mRNA-1 |
chr1_3 | three_prime_UTR | 69502379 | 69502628 | 69502379 | ID=Msa0137200-mRNA-1:three_prime_utr;Parent=Msa0137200-mRNA-1 |
Gene Sequence |
Protein sequence |