AlfalfaGEDB | Msa0043450

M. sativa cultivar zhongmu-4 / Msa0043450

KEGG: -
GO: -
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0043450	XP_039683851.1	87.119	590	46	2	23	612	663	1222	0.0	1055
Msa0043450	XP_039683851.1	87.500	376	41	1	243	612	265	640	0.0	678

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0043450	sp\|Q3ECH2\|LRL28_ARATH	55.291	378	138	8	243	605	501	862	1.19e-125	395

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0014790	Msa0043450	0.813559	2.407614e-51	-8.615850e-47
Msa0043370	Msa0043450	0.805376	1.375320e-49	-8.615850e-47
Msa0043450	Msa0043460	0.838216	3.281510e-57	-8.615850e-47
Msa0043450	Msa0050240	0.843861	1.079569e-58	-8.615850e-47
Msa0043450	Msa0108970	0.822156	2.753965e-53	-8.615850e-47
Msa0043450	Msa0341860	0.800001	1.768959e-48	-8.615850e-47
Msa0043450	Msa0360130	0.831856	1.317053e-55	-8.615850e-47
Msa0043450	Msa0410960	0.808472	3.045828e-50	-8.615850e-47
Msa0043450	Msa0451760	0.804196	2.426241e-49	-8.615850e-47
Msa0043450	Msa0503620	0.823669	1.222809e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0043450	MtrunA17_Chr7g0232421	93.750	368	23	0	245	612	1	368	0.0	716
Msa0043450	MtrunA17_Chr1g0209471	89.946	368	37	0	245	612	1	368	0.0	686
Msa0043450	MtrunA17_Chr7g0232441	88.108	370	44	0	243	612	259	628	0.0	676
Msa0043450	MtrunA17_Chr1g0209501	56.501	623	246	11	1	612	5	613	0.0	676
Msa0043450	MtrunA17_Chr1g0209401	86.908	359	46	1	254	612	1	358	0.0	644
Msa0043450	MtrunA17_Chr1g0209511	53.535	594	240	8	31	597	24	608	0.0	613
Msa0043450	MtrunA17_Chr1g0209381	50.326	614	259	16	1	582	1	600	0.0	536
Msa0043450	MtrunA17_Chr1g0208841	71.467	368	41	2	245	612	1	304	5.30e-166	475
Msa0043450	MtrunA17_Chr6g0483981	61.930	373	129	7	246	610	201	568	1.17e-154	456
Msa0043450	MtrunA17_Chr6g0484071	61.517	356	131	4	250	603	2	353	1.88e-152	443

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0043450	AT1G67000.1	55.291	378	138	8	243	605	501	862	1.21e-126	395
Msa0043450	AT1G70250.1	59.271	329	123	5	289	611	441	764	2.19e-124	386
Msa0043450	AT1G66910.2	39.514	658	315	22	7	609	16	645	4.11e-124	381
Msa0043450	AT1G66910.1	39.362	658	319	21	7	609	16	648	6.36e-124	381
Msa0043450	AT4G18250.1	54.294	361	146	6	246	598	300	649	9.30e-124	381
Msa0043450	AT5G38260.1	38.511	618	308	15	30	612	36	616	2.12e-122	376
Msa0043450	AT1G66930.1	41.488	605	278	20	31	597	71	637	1.64e-121	375
Msa0043450	AT1G66920.1	47.235	434	199	10	180	597	167	586	8.64e-121	371
Msa0043450	AT1G66920.2	46.712	441	199	10	180	597	167	594	9.76e-121	371
Msa0043450	AT1G66980.4	57.680	319	122	4	297	609	778	1089	1.49e-120	384

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Find 111 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATCTCAATAATTTGA+TGG	0.356633	1_1:-74593642	None:intergenic
AAACATCTCAATAATTTGAT+GGG	0.500701	1_1:-74593641	None:intergenic
AAAGAAACCAAAGGAGAAGG+AGG	0.550958	1_1:-74591171	None:intergenic
AAAGTGGTGGAAATGTTGGA+AGG	0.597204	1_1:+74594537	Msa0043450:CDS
AAATCAGATGTCTACAGTTA+TGG	0.433327	1_1:+74594288	Msa0043450:CDS
AAATGAAATTGATGAAGAAA+TGG	0.401918	1_1:+74594446	Msa0043450:CDS
AAATGACGGTGGTGAGTTTA+TGG	0.319914	1_1:+74594475	Msa0043450:CDS
AAATGGATTGAAGACGTGGA+AGG	0.603346	1_1:-74594606	None:intergenic
AAATGTCTAGTGAACAACTC+TGG	0.584121	1_1:-74594249	None:intergenic
AAATTAGGTCAGGGAGGATA+CGG	0.481571	1_1:+74593742	Msa0043450:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCAAAAAAAATTGAGCTAAC+TGG	+	chr1_1:74591048-74591067	Msa0043450:CDS	30.0%
TAAAAAGAAACCAAAGGAGA+AGG	-	chr1_1:74591177-74591196	None:intergenic	30.0%
CCTGTTATAATAGATATCGT+AGG	-	chr1_1:74591295-74591314	None:intergenic	30.0%
CCTACGATATCTATTATAAC+AGG	+	chr1_1:74591292-74591311	Msa0043450:CDS	30.0%
TCTCAATGTTACTAATGACA+AGG	+	chr1_1:74591323-74591342	Msa0043450:CDS	30.0%
AGAATGTTCTACTGTCAAAA+TGG	+	chr1_1:74591519-74591538	Msa0043450:CDS	30.0%
TGGTTTATGATATAACTCTG+TGG	-	chr1_1:74591704-74591723	None:intergenic	30.0%
AGATCTAGAGATTGATAAGT+TGG	-	chr1_1:74591736-74591755	None:intergenic	30.0%
AAAAAAAAAATTGAGGGGGT+GGG	-	chr1_1:74591954-74591973	None:intergenic	30.0%
AAAAAAAAAAATTGAGGGGG+TGG	-	chr1_1:74591955-74591974	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	74590814	74594647	74590814	ID=Msa0043450;Name=Msa0043450
chr1_1	mRNA	74590814	74594647	74590814	ID=Msa0043450-mRNA-1;Parent=Msa0043450;Name=Msa0043450-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0\|0\|0\|1\|1\|1\|2\|0\|612
chr1_1	exon	74590814	74591540	74590814	ID=Msa0043450-mRNA-1:exon:25164;Parent=Msa0043450-mRNA-1
chr1_1	exon	74593536	74594647	74593536	ID=Msa0043450-mRNA-1:exon:25165;Parent=Msa0043450-mRNA-1
chr1_1	CDS	74590814	74591540	74590814	ID=Msa0043450-mRNA-1:cds;Parent=Msa0043450-mRNA-1
chr1_1	CDS	74593536	74594647	74593536	ID=Msa0043450-mRNA-1:cds;Parent=Msa0043450-mRNA-1

Gene Sequence

>Msa0043450

ATGGCTCCAGTTGATTTGTTCTGCTTCCTTTTGTTTTGCCACCTCATGCTGATTTTATCAGCAGGGTATGGAAACGGGTACACATATAACTGTCCACACTCATTCAGTTGTGGAGTTCGTGGGATTTTCCGGTACCCTTTCACCAAGGCAGAGCAACCAGACTGTGGCTCCATACTCATACATGGCTGTGATGACAGTTATTATTCACCCAAAATGATCCAACTGAACAAGAATGCAAAAAAAATTGAGCTAACTGGTGTCATTGACCAGAGTACCATTACACTTTCTGATCAAGAATTTTACAAACGTTTGCAAGATAATGTTTGTGATACTTTGAACCACAATTACACTCTTCCTCCTCCTTCTCCTTTGGTTTCTTTTTATATAAACTCTAATGTGACCCTTTTCCTATGCAATCGCAGCCATAATATCAATCCTCCAGCGCAGTATTTTAAACACAACTGTTCTTCGACCTATTCCTACGATATCTATTATAACAGGAAGCCATATCTCAATGTTACTAATGACAAGGCAGATAGATTTTTCTCGTCATGCTCGGTTCTTCAGTTTCCATCTAAAGACTTGACCGATACTAAAAACATTTTATCATTTGTTTCTGCTCAAATGGAAATTAAAATAGTATTATCTGATGATTGTGATGAGTGCGCCAACCACAGAGGAGGCCAATGTATGCTTGATGCCAAAAGAATGTTCTACTGTCAAAATGCAGCCATGGTGATTGTTGGAGTTGCAGTGCTGATGTTGTTGGCTTACTGCTTTAGAACAAAGATCTTCACTCCAGCATTTCTTTTGTTCAGGAAGGAGAATCCAACCCATCAAATTATTGAGATGTTTTTGAAGGAACAAGGACCGCTTCTTGCTGCTAGGTACAGTTATTCAGAAGTCAAGAAAATAACTAACTCTTTTAGAGACAAATTAGGTCAGGGAGGATACGGATGTGTATACAAAGGGAAGTTACATGATCAGCGGATTGTTGCAGTGAAGGTATTAAGTGAGTCAAAAGGTGACGGTGAAGATTTCATCAATGAAGTTGCAAGCATTAGTAGAACTTCACATGTCAACATTGTTAGGCTTTTGGGGTTCTGTTTGGATGGTTCTAAAAAGGCATTAATATATGAATTCATGCCTAATGGATCTCTTGAGAAGTTCATATATGAAGAGAAAAATCCAATCAGGGATGATCGCCAATTGGATTGCAAAACATTGTATGATATTGCAGTTGGCGTTGCTCATGGGTTAGAGTACTTGCACAGAGGCTGTAACACTAGAATCTTACATTTTGACATAAAACCTCATAATATATTACTTGATGAGGATTTTGGTCCTAAAATTTCAGATTTTGGACTCGCTAAAATATGTCCAAGAAAAGAAAGCATTGTATCCATATTTGGTGCTAGGGGAACACCAGGATATATTGCTCCAGAGTTGTTCACTAGACATTTTGGTGGGGTGTCACATAAATCAGATGTCTACAGTTATGGAATGATGGTTTTAGAGATGGTTGGTCGAAGAAAGAACATTAAGGTTGAAGTTGATTGTTCTAGTGAGCTATATTTTCCACACTGGATTTACAAGCGTCTTGAATTGAATCAGGATCTTGGACTCAGGTGTATTAAAAATGAAATTGATGAAGAAATGGTCAGAAAAATGACGGTGGTGAGTTTATGGTGCATACAAACTGACCCTTCACATCGACCAGCAATGAATAAAGTGGTGGAAATGTTGGAAGGGAGCCTTCAAATGTTGGAAATACCACCGAAACCCTTTTTATCTTCTCCTTCCACGTCTTCAATCCATTTATCATCTGAAATATTGTGA

Protein sequence

>Msa0043450

MAPVDLFCFLLFCHLMLILSAGYGNGYTYNCPHSFSCGVRGIFRYPFTKAEQPDCGSILIHGCDDSYYSPKMIQLNKNAKKIELTGVIDQSTITLSDQEFYKRLQDNVCDTLNHNYTLPPPSPLVSFYINSNVTLFLCNRSHNINPPAQYFKHNCSSTYSYDIYYNRKPYLNVTNDKADRFFSSCSVLQFPSKDLTDTKNILSFVSAQMEIKIVLSDDCDECANHRGGQCMLDAKRMFYCQNAAMVIVGVAVLMLLAYCFRTKIFTPAFLLFRKENPTHQIIEMFLKEQGPLLAARYSYSEVKKITNSFRDKLGQGGYGCVYKGKLHDQRIVAVKVLSESKGDGEDFINEVASISRTSHVNIVRLLGFCLDGSKKALIYEFMPNGSLEKFIYEEKNPIRDDRQLDCKTLYDIAVGVAHGLEYLHRGCNTRILHFDIKPHNILLDEDFGPKISDFGLAKICPRKESIVSIFGARGTPGYIAPELFTRHFGGVSHKSDVYSYGMMVLEMVGRRKNIKVEVDCSSELYFPHWIYKRLELNQDLGLRCIKNEIDEEMVRKMTVVSLWCIQTDPSHRPAMNKVVEMLEGSLQMLEIPPKPFLSSPSTSSIHLSSEIL*