AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1422150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1422150 MtrunA17_Chr4g0045131 97.196 321 9 0 1 321 37 357 0.0 652
Msa1422150 MtrunA17_Chr4g0045121 82.243 321 56 1 1 321 1 320 0.0 538
Msa1422150 MtrunA17_Chr4g0045181 63.240 321 111 3 1 318 1 317 5.16e-158 444
Msa1422150 MtrunA17_Chr7g0235741 61.905 315 117 2 10 321 38 352 6.71e-152 430
Msa1422150 MtrunA17_Chr3g0095711 42.683 328 177 6 2 319 43 369 3.68e-90 273
Msa1422150 MtrunA17_Chr5g0394211 40.729 329 181 8 1 318 33 358 7.59e-90 272
Msa1422150 MtrunA17_Chr4g0045191 43.492 315 158 4 4 318 10 304 3.21e-89 269
Msa1422150 MtrunA17_Chr3g0133701 41.667 324 173 5 1 318 1 314 3.29e-89 269
Msa1422150 MtrunA17_Chr1g0205871 42.683 328 172 9 1 318 1 322 3.88e-86 261
Msa1422150 MtrunA17_Chr8g0353951 41.772 316 176 6 11 319 15 329 6.07e-83 254
Msa1422150 MtrunA17_Chr5g0394251 39.940 333 184 10 1 319 1 331 4.12e-80 246
Msa1422150 MtrunA17_Chr5g0394241 39.939 328 180 8 5 318 2 326 1.34e-73 229
Msa1422150 MtrunA17_Chr7g0233871 39.571 326 188 6 1 318 1 325 2.19e-73 229
Msa1422150 MtrunA17_Chr1g0205781 41.411 326 179 7 1 318 1 322 4.54e-72 226
Msa1422150 MtrunA17_Chr1g0205791 44.203 276 143 6 49 318 46 316 8.25e-65 208
Msa1422150 MtrunA17_Chr4g0025291 33.832 334 183 9 5 319 2 316 1.63e-52 175
Msa1422150 MtrunA17_Chr1g0149271 36.156 307 180 8 20 319 11 308 6.03e-52 173
Msa1422150 MtrunA17_Chr1g0210121 33.224 304 186 5 12 303 26 324 5.71e-48 164
Msa1422150 MtrunA17_Chr7g0214851 31.683 303 184 8 19 300 28 328 4.27e-42 149
Msa1422150 MtrunA17_Chr7g0268091 31.111 315 204 7 12 318 7 316 1.86e-41 146
Msa1422150 MtrunA17_Chr3g0081521 30.996 271 172 4 62 319 73 341 2.51e-39 141
Msa1422150 MtrunA17_Chr6g0474541 35.458 251 151 6 20 263 48 294 3.51e-39 141
Msa1422150 MtrunA17_Chr1g0204201 33.080 263 147 7 20 270 19 264 4.75e-39 140
Msa1422150 MtrunA17_Chr8g0351201 31.290 310 200 6 20 320 21 326 6.75e-37 134
Msa1422150 MtrunA17_Chr8g0351211 32.500 320 189 10 20 321 9 319 6.18e-36 132
Msa1422150 MtrunA17_Chr6g0474471 31.313 297 177 11 39 318 39 325 7.69e-36 132
Msa1422150 MtrunA17_Chr6g0477271 32.990 291 177 7 37 318 70 351 2.37e-35 131
Msa1422150 MtrunA17_Chr1g0196311 32.937 252 149 8 74 318 118 356 3.17e-35 131
Msa1422150 MtrunA17_Chr6g0474491 32.384 281 163 9 39 301 38 309 1.22e-34 128
Msa1422150 MtrunA17_Chr7g0259161 31.923 260 146 9 74 318 103 346 8.25e-34 127
Msa1422150 MtrunA17_Chr6g0477161 31.525 295 178 6 39 318 398 683 1.07e-33 130
Msa1422150 MtrunA17_Chr6g0477161 30.690 290 178 6 43 318 54 334 1.19e-33 130
Msa1422150 MtrunA17_Chr6g0477231 30.769 299 178 8 39 318 47 335 4.85e-33 124
Msa1422150 MtrunA17_Chr6g0474411 30.421 309 184 10 28 318 31 326 1.01e-32 123
Msa1422150 MtrunA17_Chr6g0474631 29.355 310 190 8 26 318 27 324 1.31e-32 123
Msa1422150 MtrunA17_Chr6g0477251 30.952 294 180 6 39 318 603 887 1.39e-32 127
Msa1422150 MtrunA17_Chr6g0477251 30.952 294 180 6 39 318 49 333 2.35e-31 124
Msa1422150 MtrunA17_Chr1g0204211 30.612 294 174 9 6 280 22 304 1.76e-32 123
Msa1422150 MtrunA17_Chr8g0351171 29.897 291 187 7 39 318 33 317 1.18e-30 117
Msa1422150 MtrunA17_Chr1g0191301 29.139 302 180 11 37 318 53 340 1.35e-30 118
Msa1422150 MtrunA17_Chr6g0477241 34.615 182 105 2 39 212 60 235 6.24e-29 112
Msa1422150 MtrunA17_Chr6g0458881 27.481 262 146 11 75 297 158 414 2.45e-14 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1422150 AT1G47480.1 47.812 320 154 5 1 318 1 309 1.32e-102 303
Msa1422150 AT3G48690.1 47.826 322 159 6 8 320 1 322 1.54e-101 301
Msa1422150 AT2G03550.1 46.326 313 163 4 8 318 1 310 2.51e-100 298
Msa1422150 AT3G48700.1 44.545 330 163 7 8 320 1 327 4.61e-100 298
Msa1422150 AT1G19190.1 46.057 317 163 5 8 319 1 314 1.58e-99 296
Msa1422150 AT1G49660.1 47.962 319 160 5 8 320 1 319 6.73e-96 286
Msa1422150 AT1G49650.1 44.984 309 163 6 18 320 67 374 1.22e-90 275
Msa1422150 AT1G49640.1 44.156 308 159 7 18 318 12 313 4.17e-86 261
Msa1422150 AT1G68620.1 31.023 303 192 7 5 300 16 308 5.49e-43 151
Msa1422150 AT5G16080.1 30.599 317 192 10 12 314 28 330 4.46e-39 141
Msa1422150 AT5G06570.1 31.975 319 204 7 11 318 9 325 6.23e-39 140
Msa1422150 AT5G06570.2 31.975 319 204 7 11 318 9 325 6.23e-39 140
Msa1422150 AT5G06570.3 31.975 319 204 7 11 318 24 340 9.09e-39 140
Msa1422150 AT5G06570.4 31.975 319 204 7 11 318 24 340 9.09e-39 140
Msa1422150 AT2G45600.1 30.128 312 195 8 20 319 16 316 9.13e-34 127
Msa1422150 AT5G27320.1 28.146 302 186 9 37 320 53 341 9.20e-33 124
Msa1422150 AT2G45610.1 31.164 292 183 7 39 318 38 323 1.92e-32 123
Msa1422150 AT3G05120.1 28.428 299 181 10 42 320 58 343 1.26e-31 121
Msa1422150 AT5G23530.1 30.314 287 183 7 38 318 51 326 3.16e-31 120
Msa1422150 AT3G63010.1 32.143 252 151 8 74 318 103 341 1.30e-30 119
Msa1422150 AT5G62180.1 30.037 273 167 7 39 296 38 301 1.62e-27 110

Find 74 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGAAAAGATTCATAATTTA+TGG 0.132943 tig0025341:-22220 Msa1422150:CDS
GGTTGGTGGGTGATTGGTTT+TGG 0.145456 tig0025341:+22670 None:intergenic
CCTGTTCTTGTTTACATTCA+TGG 0.188053 tig0025341:-22638 Msa1422150:CDS
TGCTGAGATGTTATGTTCTT+TGG 0.197369 tig0025341:+22706 None:intergenic
ACTTCACTTGCTAATGTTAT+TGG 0.227846 tig0025341:-22554 Msa1422150:CDS
TCGGGTCGGGAAGGAAAATT+TGG 0.248520 tig0025341:-22333 Msa1422150:CDS
CCACAGGTCATGAAGATTCT+TGG 0.249527 tig0025341:-22490 Msa1422150:CDS
CCCGGCTAATGATCCGGATT+TGG 0.252548 tig0025341:-22150 Msa1422150:CDS
TTGCACACCATTTAAGTATT+CGG 0.264356 tig0025341:-22352 Msa1422150:CDS
CCGGCTAATGATCCGGATTT+GGG 0.298106 tig0025341:-22149 Msa1422150:CDS
CCTGTGGGAACAGGGTGTTC+AGG 0.298801 tig0025341:+22506 None:intergenic
TGCACACCATTTAAGTATTC+GGG 0.314345 tig0025341:-22351 Msa1422150:CDS
TTAAGGTAGTTATGGTAGTT+TGG 0.317173 tig0025341:+22584 None:intergenic
CTGTGGGAACAGGGTGTTCA+GGG 0.338171 tig0025341:+22507 None:intergenic
TCCCGACCCGAATACTTAAA+TGG 0.338222 tig0025341:+22345 None:intergenic
GGATAGGGGTTGGTATTATA+AGG 0.344213 tig0025341:-22072 Msa1422150:CDS
ATTCTTGGCTTGCACTCAAA+TGG 0.347739 tig0025341:-22475 Msa1422150:CDS
GCTTCACATGTTGGTGGAAA+TGG 0.350595 tig0025341:-22449 Msa1422150:CDS
TCTTCATGACCTGTGGGAAC+AGG 0.379458 tig0025341:+22497 None:intergenic
AGATTGCTTATTTGTGTTGC+TGG 0.381182 tig0025341:-22110 Msa1422150:CDS
TAACAGAGTTAAGGTAGTTA+TGG 0.382469 tig0025341:+22576 None:intergenic
TTGGATGGTTTGAAACTTGA+AGG 0.392629 tig0025341:-22314 Msa1422150:CDS
GGTCGTGTTCAGAGACTTGC+AGG 0.405326 tig0025341:-22794 Msa1422150:CDS
TTATGGTAGTTTGGTGAGAA+AGG 0.405757 tig0025341:+22593 None:intergenic
CCATGAATGTAAACAAGAAC+AGG 0.406581 tig0025341:+22638 None:intergenic
TGATCCGGATTTGGGGAAGT+TGG 0.425803 tig0025341:-22141 Msa1422150:CDS
GATCCGGATTTGGGGAAGTT+GGG 0.428894 tig0025341:-22140 Msa1422150:CDS
CCCAAATCCGGATCATTAGC+CGG 0.438064 tig0025341:+22149 None:intergenic
TTCTTGGCTTGCACTCAAAT+GGG 0.448935 tig0025341:-22474 Msa1422150:CDS
CAACCCAACTTCCCCAAATC+CGG 0.451858 tig0025341:+22137 None:intergenic
GATTAACCCGGCTAATGATC+CGG 0.463961 tig0025341:-22156 Msa1422150:CDS
CATTAGCCGGGTTAATCAAC+GGG 0.468907 tig0025341:+22162 None:intergenic
CTTTGATGAAGGAAACAACT+TGG 0.469524 tig0025341:+21934 None:intergenic
ACCATTTAAGTATTCGGGTC+GGG 0.470145 tig0025341:-22346 Msa1422150:CDS
GTTCTTAAATTATACAAAAG+TGG 0.472355 tig0025341:-22815 Msa1422150:CDS
CCAAATCCGGATCATTAGCC+GGG 0.473736 tig0025341:+22150 None:intergenic
CAAGTTGTTTCCTTCATCAA+AGG 0.484994 tig0025341:-21933 Msa1422150:CDS
CAAGTGAAGTAACAGAGTTA+AGG 0.493229 tig0025341:+22567 None:intergenic
TTCATCGTCGATGGTGGAGG+AGG 0.507650 tig0025341:+22859 None:intergenic
CGGGTTAATCAACGGGTCAT+CGG 0.507916 tig0025341:+22169 None:intergenic
TACTTCATCGTCGATGGTGG+AGG 0.523560 tig0025341:+22856 None:intergenic
AAATAGTTGGGGTGGTGTTG+TGG 0.524797 tig0025341:-22036 Msa1422150:CDS
GATTGCTTATTTGTGTTGCT+GGG 0.526972 tig0025341:-22109 Msa1422150:CDS
TTCATAGGAGGTGATAGTGC+TGG 0.528280 tig0025341:-22383 Msa1422150:CDS
TGGATGGTTTGAAACTTGAA+GGG 0.541623 tig0025341:-22313 Msa1422150:CDS
GTGGAAATGGCTCTGATGAA+TGG 0.542774 tig0025341:-22436 Msa1422150:CDS
TGTTCAGAGACTTGCAGGTA+CGG 0.552280 tig0025341:-22789 Msa1422150:CDS
TTTGCATGTCCAACTACGAA+TGG 0.552729 tig0025341:-22194 Msa1422150:CDS
GGCTACTTCATCGTCGATGG+TGG 0.554184 tig0025341:+22853 None:intergenic
CTTCATGACCTGTGGGAACA+GGG 0.558600 tig0025341:+22498 None:intergenic
TCATCGGATCCATTCGTAGT+TGG 0.564890 tig0025341:+22185 None:intergenic
AACGGCTACTTCATCGTCGA+TGG 0.565230 tig0025341:+22850 None:intergenic
CACCATTTAAGTATTCGGGT+CGG 0.566021 tig0025341:-22347 Msa1422150:CDS
GTCGGGAAGGAAAATTTGGA+TGG 0.567129 tig0025341:-22329 Msa1422150:CDS
CCTGAACACCCTGTTCCCAC+AGG 0.567848 tig0025341:-22506 Msa1422150:CDS
ACCGCAGCATTGTCACATGT+TGG 0.575233 tig0025341:+21966 None:intergenic
AAATGGGTTGCTTCACATGT+TGG 0.579541 tig0025341:-22458 Msa1422150:CDS
TCATTAGCCGGGTTAATCAA+CGG 0.581749 tig0025341:+22161 None:intergenic
AAGAACTGGGGTTAGATCAA+CGG 0.586206 tig0025341:+22832 None:intergenic
CCAAGAATCTTCATGACCTG+TGG 0.586890 tig0025341:+22490 None:intergenic
TGTGGGAACAGGGTGTTCAG+GGG 0.589713 tig0025341:+22508 None:intergenic
TTTAAGTATTCGGGTCGGGA+AGG 0.597599 tig0025341:-22342 Msa1422150:CDS
AACATCTTTAGATTCAACGT+TGG 0.601272 tig0025341:+22736 None:intergenic
CGATGACCCGTTGATTAACC+CGG 0.602163 tig0025341:-22168 Msa1422150:CDS
GGTGGAGGAGGTTGAATCCA+TGG 0.605959 tig0025341:+22871 None:intergenic
CAAGAATCTTCATGACCTGT+GGG 0.606763 tig0025341:+22491 None:intergenic
TGTGGAAGTGATTGAAACAG+AGG 0.609748 tig0025341:-22018 Msa1422150:CDS
TTTGTATAATTTAAGAACTG+GGG 0.616246 tig0025341:+22820 None:intergenic
TGGGTTGCTTCACATGTTGG+TGG 0.616285 tig0025341:-22455 Msa1422150:CDS
CGGCTAATGATCCGGATTTG+GGG 0.633862 tig0025341:-22148 Msa1422150:CDS
ACCAACATGTGACAATGCTG+CGG 0.661762 tig0025341:-21967 Msa1422150:CDS
GTTCTTGTTTACATTCATGG+TGG 0.662192 tig0025341:-22635 Msa1422150:CDS
ATAGGAGGTGATAGTGCTGG+TGG 0.662743 tig0025341:-22380 Msa1422150:CDS
CATGAATGTAAACAAGAACA+GGG 0.675441 tig0025341:+22639 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTATAATTTAAGAACT+GGG + tig0025341:21979-21998 None:intergenic 15.0%
!!! TTTATATTCATCCTTATTTT+TGG - tig0025341:22509-22528 Msa1422150:CDS 15.0%
!!! TTATATTCATCCTTATTTTT+GGG - tig0025341:22510-22529 Msa1422150:CDS 15.0%
!! TAGAAAAGATTCATAATTTA+TGG - tig0025341:22575-22594 Msa1422150:CDS 15.0%
!!! TTTTGTATAATTTAAGAACT+GGG + tig0025341:21979-21998 None:intergenic 15.0%
!!! TTTATATTCATCCTTATTTT+TGG - tig0025341:22509-22528 Msa1422150:CDS 15.0%
!!! TTATATTCATCCTTATTTTT+GGG - tig0025341:22510-22529 Msa1422150:CDS 15.0%
!! TAGAAAAGATTCATAATTTA+TGG - tig0025341:22575-22594 Msa1422150:CDS 15.0%
!! TTTGTATAATTTAAGAACTG+GGG + tig0025341:21978-21997 None:intergenic 20.0%
!!! CTTTTGTATAATTTAAGAAC+TGG + tig0025341:21980-21999 None:intergenic 20.0%
!! GTTCTTAAATTATACAAAAG+TGG - tig0025341:21980-21999 Msa1422150:CDS 20.0%
!!! TATATTCATCCTTATTTTTG+GGG - tig0025341:22511-22530 Msa1422150:CDS 20.0%
!! TTTGTATAATTTAAGAACTG+GGG + tig0025341:21978-21997 None:intergenic 20.0%
!!! CTTTTGTATAATTTAAGAAC+TGG + tig0025341:21980-21999 None:intergenic 20.0%
!! GTTCTTAAATTATACAAAAG+TGG - tig0025341:21980-21999 Msa1422150:CDS 20.0%
!!! TATATTCATCCTTATTTTTG+GGG - tig0025341:22511-22530 Msa1422150:CDS 20.0%
!!! GATTTTGAGAAAGTTTTCAT+AGG - tig0025341:22397-22416 Msa1422150:CDS 25.0%
! AATTGCTTGAGAAAAATAGT+TGG - tig0025341:22746-22765 Msa1422150:CDS 25.0%
! ATTGCTTGAGAAAAATAGTT+GGG - tig0025341:22747-22766 Msa1422150:CDS 25.0%
!!! GATTTTGAGAAAGTTTTCAT+AGG - tig0025341:22397-22416 Msa1422150:CDS 25.0%
! AATTGCTTGAGAAAAATAGT+TGG - tig0025341:22746-22765 Msa1422150:CDS 25.0%
! ATTGCTTGAGAAAAATAGTT+GGG - tig0025341:22747-22766 Msa1422150:CDS 25.0%
!!! TTAGATTCAACGTTGGTTTT+AGG + tig0025341:22055-22074 None:intergenic 30.0%
AACATCTTTAGATTCAACGT+TGG + tig0025341:22062-22081 None:intergenic 30.0%
CATGAATGTAAACAAGAACA+GGG + tig0025341:22159-22178 None:intergenic 30.0%
TTAAGGTAGTTATGGTAGTT+TGG + tig0025341:22214-22233 None:intergenic 30.0%
TAACAGAGTTAAGGTAGTTA+TGG + tig0025341:22222-22241 None:intergenic 30.0%
! ACTTCACTTGCTAATGTTAT+TGG - tig0025341:22241-22260 Msa1422150:CDS 30.0%
! TTTGAGAAAGTTTTCATAGG+AGG - tig0025341:22400-22419 Msa1422150:CDS 30.0%
TTGCACACCATTTAAGTATT+CGG - tig0025341:22443-22462 Msa1422150:CDS 30.0%
!! GCAAGATATTTTGAAGGATA+GGG - tig0025341:22708-22727 Msa1422150:CDS 30.0%
!! CAAGATATTTTGAAGGATAG+GGG - tig0025341:22709-22728 Msa1422150:CDS 30.0%
TTGCTTGAGAAAAATAGTTG+GGG - tig0025341:22748-22767 Msa1422150:CDS 30.0%
!!! TTAGATTCAACGTTGGTTTT+AGG + tig0025341:22055-22074 None:intergenic 30.0%
AACATCTTTAGATTCAACGT+TGG + tig0025341:22062-22081 None:intergenic 30.0%
CATGAATGTAAACAAGAACA+GGG + tig0025341:22159-22178 None:intergenic 30.0%
TTAAGGTAGTTATGGTAGTT+TGG + tig0025341:22214-22233 None:intergenic 30.0%
TAACAGAGTTAAGGTAGTTA+TGG + tig0025341:22222-22241 None:intergenic 30.0%
! ACTTCACTTGCTAATGTTAT+TGG - tig0025341:22241-22260 Msa1422150:CDS 30.0%
! TTTGAGAAAGTTTTCATAGG+AGG - tig0025341:22400-22419 Msa1422150:CDS 30.0%
TTGCACACCATTTAAGTATT+CGG - tig0025341:22443-22462 Msa1422150:CDS 30.0%
!! GCAAGATATTTTGAAGGATA+GGG - tig0025341:22708-22727 Msa1422150:CDS 30.0%
!! CAAGATATTTTGAAGGATAG+GGG - tig0025341:22709-22728 Msa1422150:CDS 30.0%
TTGCTTGAGAAAAATAGTTG+GGG - tig0025341:22748-22767 Msa1422150:CDS 30.0%
!!! TTGGTTTTAGGATCAAGAGA+TGG + tig0025341:22043-22062 None:intergenic 35.0%
TGCTGAGATGTTATGTTCTT+TGG + tig0025341:22092-22111 None:intergenic 35.0%
! AACAAGAACAGGGAGTTTTT+GGG + tig0025341:22149-22168 None:intergenic 35.0%
! AAACAAGAACAGGGAGTTTT+TGG + tig0025341:22150-22169 None:intergenic 35.0%
CCATGAATGTAAACAAGAAC+AGG + tig0025341:22160-22179 None:intergenic 35.0%
! CCTGTTCTTGTTTACATTCA+TGG - tig0025341:22157-22176 Msa1422150:CDS 35.0%
! GTTCTTGTTTACATTCATGG+TGG - tig0025341:22160-22179 Msa1422150:CDS 35.0%
! TTATGGTAGTTTGGTGAGAA+AGG + tig0025341:22205-22224 None:intergenic 35.0%
CAAGTGAAGTAACAGAGTTA+AGG + tig0025341:22231-22250 None:intergenic 35.0%
TGCACACCATTTAAGTATTC+GGG - tig0025341:22444-22463 Msa1422150:CDS 35.0%
! TTGGATGGTTTGAAACTTGA+AGG - tig0025341:22481-22500 Msa1422150:CDS 35.0%
! TGGATGGTTTGAAACTTGAA+GGG - tig0025341:22482-22501 Msa1422150:CDS 35.0%
AGATTGCTTATTTGTGTTGC+TGG - tig0025341:22685-22704 Msa1422150:CDS 35.0%
! GATTGCTTATTTGTGTTGCT+GGG - tig0025341:22686-22705 Msa1422150:CDS 35.0%
!! GGCAAGATATTTTGAAGGAT+AGG - tig0025341:22707-22726 Msa1422150:CDS 35.0%
!! ATATTTTGAAGGATAGGGGT+TGG - tig0025341:22713-22732 Msa1422150:CDS 35.0%
CTTTGATGAAGGAAACAACT+TGG + tig0025341:22864-22883 None:intergenic 35.0%
! CAAGTTGTTTCCTTCATCAA+AGG - tig0025341:22862-22881 Msa1422150:CDS 35.0%
!!! TTGGTTTTAGGATCAAGAGA+TGG + tig0025341:22043-22062 None:intergenic 35.0%
TGCTGAGATGTTATGTTCTT+TGG + tig0025341:22092-22111 None:intergenic 35.0%
! AACAAGAACAGGGAGTTTTT+GGG + tig0025341:22149-22168 None:intergenic 35.0%
! AAACAAGAACAGGGAGTTTT+TGG + tig0025341:22150-22169 None:intergenic 35.0%
CCATGAATGTAAACAAGAAC+AGG + tig0025341:22160-22179 None:intergenic 35.0%
! CCTGTTCTTGTTTACATTCA+TGG - tig0025341:22157-22176 Msa1422150:CDS 35.0%
! GTTCTTGTTTACATTCATGG+TGG - tig0025341:22160-22179 Msa1422150:CDS 35.0%
! TTATGGTAGTTTGGTGAGAA+AGG + tig0025341:22205-22224 None:intergenic 35.0%
CAAGTGAAGTAACAGAGTTA+AGG + tig0025341:22231-22250 None:intergenic 35.0%
TGCACACCATTTAAGTATTC+GGG - tig0025341:22444-22463 Msa1422150:CDS 35.0%
! TTGGATGGTTTGAAACTTGA+AGG - tig0025341:22481-22500 Msa1422150:CDS 35.0%
! TGGATGGTTTGAAACTTGAA+GGG - tig0025341:22482-22501 Msa1422150:CDS 35.0%
AGATTGCTTATTTGTGTTGC+TGG - tig0025341:22685-22704 Msa1422150:CDS 35.0%
! GATTGCTTATTTGTGTTGCT+GGG - tig0025341:22686-22705 Msa1422150:CDS 35.0%
!! GGCAAGATATTTTGAAGGAT+AGG - tig0025341:22707-22726 Msa1422150:CDS 35.0%
!! ATATTTTGAAGGATAGGGGT+TGG - tig0025341:22713-22732 Msa1422150:CDS 35.0%
CTTTGATGAAGGAAACAACT+TGG + tig0025341:22864-22883 None:intergenic 35.0%
! CAAGTTGTTTCCTTCATCAA+AGG - tig0025341:22862-22881 Msa1422150:CDS 35.0%
AAGAACTGGGGTTAGATCAA+CGG + tig0025341:21966-21985 None:intergenic 40.0%
!!! GTTTTAGGATCAAGAGATGG+AGG + tig0025341:22040-22059 None:intergenic 40.0%
CAAGAATCTTCATGACCTGT+GGG + tig0025341:22307-22326 None:intergenic 40.0%
!! ATTCTTGGCTTGCACTCAAA+TGG - tig0025341:22320-22339 Msa1422150:CDS 40.0%
!! TTCTTGGCTTGCACTCAAAT+GGG - tig0025341:22321-22340 Msa1422150:CDS 40.0%
!! AAATGGGTTGCTTCACATGT+TGG - tig0025341:22337-22356 Msa1422150:CDS 40.0%
CACCATTTAAGTATTCGGGT+CGG - tig0025341:22448-22467 Msa1422150:CDS 40.0%
ACCATTTAAGTATTCGGGTC+GGG - tig0025341:22449-22468 Msa1422150:CDS 40.0%
CGATCTACACCCCAAAAATA+AGG + tig0025341:22523-22542 None:intergenic 40.0%
!!! TTTTGGGGTGTAGATCGAAT+TGG - tig0025341:22526-22545 Msa1422150:CDS 40.0%
TTTGCATGTCCAACTACGAA+TGG - tig0025341:22601-22620 Msa1422150:CDS 40.0%
TCATTAGCCGGGTTAATCAA+CGG + tig0025341:22637-22656 None:intergenic 40.0%
!! TGCTGGGCAAGATATTTTGA+AGG - tig0025341:22702-22721 Msa1422150:CDS 40.0%
!! GGATAGGGGTTGGTATTATA+AGG - tig0025341:22723-22742 Msa1422150:CDS 40.0%
CTTGAGAAAAATAGTTGGGG+TGG - tig0025341:22751-22770 Msa1422150:CDS 40.0%
TGTGGAAGTGATTGAAACAG+AGG - tig0025341:22777-22796 Msa1422150:CDS 40.0%
AAGAACTGGGGTTAGATCAA+CGG + tig0025341:21966-21985 None:intergenic 40.0%
!!! GTTTTAGGATCAAGAGATGG+AGG + tig0025341:22040-22059 None:intergenic 40.0%
CAAGAATCTTCATGACCTGT+GGG + tig0025341:22307-22326 None:intergenic 40.0%
!! ATTCTTGGCTTGCACTCAAA+TGG - tig0025341:22320-22339 Msa1422150:CDS 40.0%
!! TTCTTGGCTTGCACTCAAAT+GGG - tig0025341:22321-22340 Msa1422150:CDS 40.0%
!! AAATGGGTTGCTTCACATGT+TGG - tig0025341:22337-22356 Msa1422150:CDS 40.0%
CACCATTTAAGTATTCGGGT+CGG - tig0025341:22448-22467 Msa1422150:CDS 40.0%
ACCATTTAAGTATTCGGGTC+GGG - tig0025341:22449-22468 Msa1422150:CDS 40.0%
CGATCTACACCCCAAAAATA+AGG + tig0025341:22523-22542 None:intergenic 40.0%
!!! TTTTGGGGTGTAGATCGAAT+TGG - tig0025341:22526-22545 Msa1422150:CDS 40.0%
TTTGCATGTCCAACTACGAA+TGG - tig0025341:22601-22620 Msa1422150:CDS 40.0%
TCATTAGCCGGGTTAATCAA+CGG + tig0025341:22637-22656 None:intergenic 40.0%
!! TGCTGGGCAAGATATTTTGA+AGG - tig0025341:22702-22721 Msa1422150:CDS 40.0%
!! GGATAGGGGTTGGTATTATA+AGG - tig0025341:22723-22742 Msa1422150:CDS 40.0%
CTTGAGAAAAATAGTTGGGG+TGG - tig0025341:22751-22770 Msa1422150:CDS 40.0%
TGTGGAAGTGATTGAAACAG+AGG - tig0025341:22777-22796 Msa1422150:CDS 40.0%
TGTTCAGAGACTTGCAGGTA+CGG - tig0025341:22006-22025 Msa1422150:CDS 45.0%
!!! GTTGGTGGGTGATTGGTTTT+GGG + tig0025341:22127-22146 None:intergenic 45.0%
!!! TTTTTGGGTTGGTGGGTGAT+TGG + tig0025341:22134-22153 None:intergenic 45.0%
!!! AGAACAGGGAGTTTTTGGGT+TGG + tig0025341:22145-22164 None:intergenic 45.0%
CCAAGAATCTTCATGACCTG+TGG + tig0025341:22308-22327 None:intergenic 45.0%
CCACAGGTCATGAAGATTCT+TGG - tig0025341:22305-22324 Msa1422150:CDS 45.0%
! GCTTCACATGTTGGTGGAAA+TGG - tig0025341:22346-22365 Msa1422150:CDS 45.0%
!! GTGGAAATGGCTCTGATGAA+TGG - tig0025341:22359-22378 Msa1422150:CDS 45.0%
! TTCATAGGAGGTGATAGTGC+TGG - tig0025341:22412-22431 Msa1422150:CDS 45.0%
TCCCGACCCGAATACTTAAA+TGG + tig0025341:22453-22472 None:intergenic 45.0%
TTTAAGTATTCGGGTCGGGA+AGG - tig0025341:22453-22472 Msa1422150:CDS 45.0%
GTCGGGAAGGAAAATTTGGA+TGG - tig0025341:22466-22485 Msa1422150:CDS 45.0%
TCATCGGATCCATTCGTAGT+TGG + tig0025341:22613-22632 None:intergenic 45.0%
CATTAGCCGGGTTAATCAAC+GGG + tig0025341:22636-22655 None:intergenic 45.0%
GATTAACCCGGCTAATGATC+CGG - tig0025341:22639-22658 Msa1422150:CDS 45.0%
! AAATAGTTGGGGTGGTGTTG+TGG - tig0025341:22759-22778 Msa1422150:CDS 45.0%
ACCAACATGTGACAATGCTG+CGG - tig0025341:22828-22847 Msa1422150:CDS 45.0%
TGTTCAGAGACTTGCAGGTA+CGG - tig0025341:22006-22025 Msa1422150:CDS 45.0%
!!! GTTGGTGGGTGATTGGTTTT+GGG + tig0025341:22127-22146 None:intergenic 45.0%
!!! TTTTTGGGTTGGTGGGTGAT+TGG + tig0025341:22134-22153 None:intergenic 45.0%
!!! AGAACAGGGAGTTTTTGGGT+TGG + tig0025341:22145-22164 None:intergenic 45.0%
CCAAGAATCTTCATGACCTG+TGG + tig0025341:22308-22327 None:intergenic 45.0%
CCACAGGTCATGAAGATTCT+TGG - tig0025341:22305-22324 Msa1422150:CDS 45.0%
! GCTTCACATGTTGGTGGAAA+TGG - tig0025341:22346-22365 Msa1422150:CDS 45.0%
!! GTGGAAATGGCTCTGATGAA+TGG - tig0025341:22359-22378 Msa1422150:CDS 45.0%
! TTCATAGGAGGTGATAGTGC+TGG - tig0025341:22412-22431 Msa1422150:CDS 45.0%
TCCCGACCCGAATACTTAAA+TGG + tig0025341:22453-22472 None:intergenic 45.0%
TTTAAGTATTCGGGTCGGGA+AGG - tig0025341:22453-22472 Msa1422150:CDS 45.0%
GTCGGGAAGGAAAATTTGGA+TGG - tig0025341:22466-22485 Msa1422150:CDS 45.0%
TCATCGGATCCATTCGTAGT+TGG + tig0025341:22613-22632 None:intergenic 45.0%
CATTAGCCGGGTTAATCAAC+GGG + tig0025341:22636-22655 None:intergenic 45.0%
GATTAACCCGGCTAATGATC+CGG - tig0025341:22639-22658 Msa1422150:CDS 45.0%
! AAATAGTTGGGGTGGTGTTG+TGG - tig0025341:22759-22778 Msa1422150:CDS 45.0%
ACCAACATGTGACAATGCTG+CGG - tig0025341:22828-22847 Msa1422150:CDS 45.0%
! TACTTCATCGTCGATGGTGG+AGG + tig0025341:21942-21961 None:intergenic 50.0%
AACGGCTACTTCATCGTCGA+TGG + tig0025341:21948-21967 None:intergenic 50.0%
!!! GGTTGGTGGGTGATTGGTTT+TGG + tig0025341:22128-22147 None:intergenic 50.0%
!!! CAGGGAGTTTTTGGGTTGGT+GGG + tig0025341:22141-22160 None:intergenic 50.0%
!!! ACAGGGAGTTTTTGGGTTGG+TGG + tig0025341:22142-22161 None:intergenic 50.0%
CTTCATGACCTGTGGGAACA+GGG + tig0025341:22300-22319 None:intergenic 50.0%
TCTTCATGACCTGTGGGAAC+AGG + tig0025341:22301-22320 None:intergenic 50.0%
TGGGTTGCTTCACATGTTGG+TGG - tig0025341:22340-22359 Msa1422150:CDS 50.0%
! ATAGGAGGTGATAGTGCTGG+TGG - tig0025341:22415-22434 Msa1422150:CDS 50.0%
TCGGGTCGGGAAGGAAAATT+TGG - tig0025341:22462-22481 Msa1422150:CDS 50.0%
CGGGTTAATCAACGGGTCAT+CGG + tig0025341:22629-22648 None:intergenic 50.0%
! CGATGACCCGTTGATTAACC+CGG - tig0025341:22627-22646 Msa1422150:CDS 50.0%
CCAAATCCGGATCATTAGCC+GGG + tig0025341:22648-22667 None:intergenic 50.0%
CCCAAATCCGGATCATTAGC+CGG + tig0025341:22649-22668 None:intergenic 50.0%
CCGGCTAATGATCCGGATTT+GGG - tig0025341:22646-22665 Msa1422150:CDS 50.0%
CGGCTAATGATCCGGATTTG+GGG - tig0025341:22647-22666 Msa1422150:CDS 50.0%
TGATCCGGATTTGGGGAAGT+TGG - tig0025341:22654-22673 Msa1422150:CDS 50.0%
GATCCGGATTTGGGGAAGTT+GGG - tig0025341:22655-22674 Msa1422150:CDS 50.0%
CAACCCAACTTCCCCAAATC+CGG + tig0025341:22661-22680 None:intergenic 50.0%
ACCGCAGCATTGTCACATGT+TGG + tig0025341:22832-22851 None:intergenic 50.0%
! TACTTCATCGTCGATGGTGG+AGG + tig0025341:21942-21961 None:intergenic 50.0%
AACGGCTACTTCATCGTCGA+TGG + tig0025341:21948-21967 None:intergenic 50.0%
!!! GGTTGGTGGGTGATTGGTTT+TGG + tig0025341:22128-22147 None:intergenic 50.0%
!!! CAGGGAGTTTTTGGGTTGGT+GGG + tig0025341:22141-22160 None:intergenic 50.0%
!!! ACAGGGAGTTTTTGGGTTGG+TGG + tig0025341:22142-22161 None:intergenic 50.0%
CTTCATGACCTGTGGGAACA+GGG + tig0025341:22300-22319 None:intergenic 50.0%
TCTTCATGACCTGTGGGAAC+AGG + tig0025341:22301-22320 None:intergenic 50.0%
TGGGTTGCTTCACATGTTGG+TGG - tig0025341:22340-22359 Msa1422150:CDS 50.0%
! ATAGGAGGTGATAGTGCTGG+TGG - tig0025341:22415-22434 Msa1422150:CDS 50.0%
TCGGGTCGGGAAGGAAAATT+TGG - tig0025341:22462-22481 Msa1422150:CDS 50.0%
CGGGTTAATCAACGGGTCAT+CGG + tig0025341:22629-22648 None:intergenic 50.0%
! CGATGACCCGTTGATTAACC+CGG - tig0025341:22627-22646 Msa1422150:CDS 50.0%
CCAAATCCGGATCATTAGCC+GGG + tig0025341:22648-22667 None:intergenic 50.0%
CCCAAATCCGGATCATTAGC+CGG + tig0025341:22649-22668 None:intergenic 50.0%
CCGGCTAATGATCCGGATTT+GGG - tig0025341:22646-22665 Msa1422150:CDS 50.0%
CGGCTAATGATCCGGATTTG+GGG - tig0025341:22647-22666 Msa1422150:CDS 50.0%
TGATCCGGATTTGGGGAAGT+TGG - tig0025341:22654-22673 Msa1422150:CDS 50.0%
GATCCGGATTTGGGGAAGTT+GGG - tig0025341:22655-22674 Msa1422150:CDS 50.0%
CAACCCAACTTCCCCAAATC+CGG + tig0025341:22661-22680 None:intergenic 50.0%
ACCGCAGCATTGTCACATGT+TGG + tig0025341:22832-22851 None:intergenic 50.0%
!! TTCATCGTCGATGGTGGAGG+AGG + tig0025341:21939-21958 None:intergenic 55.0%
GGCTACTTCATCGTCGATGG+TGG + tig0025341:21945-21964 None:intergenic 55.0%
GGTCGTGTTCAGAGACTTGC+AGG - tig0025341:22001-22020 Msa1422150:CDS 55.0%
! TGTGGGAACAGGGTGTTCAG+GGG + tig0025341:22290-22309 None:intergenic 55.0%
! CTGTGGGAACAGGGTGTTCA+GGG + tig0025341:22291-22310 None:intergenic 55.0%
CCCGGCTAATGATCCGGATT+TGG - tig0025341:22645-22664 Msa1422150:CDS 55.0%
!! TTCATCGTCGATGGTGGAGG+AGG + tig0025341:21939-21958 None:intergenic 55.0%
GGCTACTTCATCGTCGATGG+TGG + tig0025341:21945-21964 None:intergenic 55.0%
GGTCGTGTTCAGAGACTTGC+AGG - tig0025341:22001-22020 Msa1422150:CDS 55.0%
! TGTGGGAACAGGGTGTTCAG+GGG + tig0025341:22290-22309 None:intergenic 55.0%
! CTGTGGGAACAGGGTGTTCA+GGG + tig0025341:22291-22310 None:intergenic 55.0%
CCCGGCTAATGATCCGGATT+TGG - tig0025341:22645-22664 Msa1422150:CDS 55.0%
! CCTGTGGGAACAGGGTGTTC+AGG + tig0025341:22292-22311 None:intergenic 60.0%
CCTGAACACCCTGTTCCCAC+AGG - tig0025341:22289-22308 Msa1422150:CDS 60.0%
! CCTGTGGGAACAGGGTGTTC+AGG + tig0025341:22292-22311 None:intergenic 60.0%
CCTGAACACCCTGTTCCCAC+AGG - tig0025341:22289-22308 Msa1422150:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0025341 gene 21926 22891 21926 ID=Msa1422150;Name=Msa1422150
tig0025341 mRNA 21926 22891 21926 ID=Msa1422150-mRNA-1;Parent=Msa1422150;Name=Msa1422150-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|321
tig0025341 exon 21926 22891 21926 ID=Msa1422150-mRNA-1:exon:2450;Parent=Msa1422150-mRNA-1
tig0025341 CDS 21926 22891 21926 ID=Msa1422150-mRNA-1:cds;Parent=Msa1422150-mRNA-1
Gene Sequence

>Msa1422150

ATGGATTCAACCTCCTCCACCATCGACGATGAAGTAGCCGTTGATCTAACCCCAGTTCTTAAATTATACAAAAGTGGTCGTGTTCAGAGACTTGCAGGTACGGAAGTTCTTCCTCCATCTCTTGATCCTAAAACCAACGTTGAATCTAAAGATGTTATAATCTCCAAAGAACATAACATCTCAGCAAGACTTTTCATTCCCAAAACCAATCACCCACCAACCCAAAAACTCCCTGTTCTTGTTTACATTCATGGTGGTGCTTTCTGCATTGAAACACCTTTCTCACCAAACTACCATAACTACCTTAACTCTGTTACTTCACTTGCTAATGTTATTGGTGTCTCTGTTCATTACAGAAGAGCCCCTGAACACCCTGTTCCCACAGGTCATGAAGATTCTTGGCTTGCACTCAAATGGGTTGCTTCACATGTTGGTGGAAATGGCTCTGATGAATGGTTGAATCAATATGCAGATTTTGAGAAAGTTTTCATAGGAGGTGATAGTGCTGGTGGTAATATTGCACACCATTTAAGTATTCGGGTCGGGAAGGAAAATTTGGATGGTTTGAAACTTGAAGGGAGTTTTTATATTCATCCTTATTTTTGGGGTGTAGATCGAATTGGTTCAGAACTGAAACAAGCTGAATATATAGAAAAGATTCATAATTTATGGCGTTTTGCATGTCCAACTACGAATGGATCCGATGACCCGTTGATTAACCCGGCTAATGATCCGGATTTGGGGAAGTTGGGTTGTAAGAGATTGCTTATTTGTGTTGCTGGGCAAGATATTTTGAAGGATAGGGGTTGGTATTATAAGGAATTGCTTGAGAAAAATAGTTGGGGTGGTGTTGTGGAAGTGATTGAAACAGAGGATGAGAATCATGTGTTTCATATGTTCAAACCAACATGTGACAATGCTGCGGTTTTGCTTAACCAAGTTGTTTCCTTCATCAAAGGTGCTTGA

Protein sequence

>Msa1422150

MDSTSSTIDDEVAVDLTPVLKLYKSGRVQRLAGTEVLPPSLDPKTNVESKDVIISKEHNISARLFIPKTNHPPTQKLPVLVYIHGGAFCIETPFSPNYHNYLNSVTSLANVIGVSVHYRRAPEHPVPTGHEDSWLALKWVASHVGGNGSDEWLNQYADFEKVFIGGDSAGGNIAHHLSIRVGKENLDGLKLEGSFYIHPYFWGVDRIGSELKQAEYIEKIHNLWRFACPTTNGSDDPLINPANDPDLGKLGCKRLLICVAGQDILKDRGWYYKELLEKNSWGGVVEVIETEDENHVFHMFKPTCDNAAVLLNQVVSFIKGA*