Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0043480 | sp|Q65XS5|BC10_ORYSJ | 34.194 | 310 | 152 | 9 | 125 | 387 | 85 | 389 | 8.12e-42 | 155 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043480 | Msa0043630 | 0.982061 | 3.937687e-154 | -8.615850e-47 |
| Msa0043480 | Msa0182200 | 0.979648 | 1.972093e-148 | -8.615850e-47 |
| Msa0043480 | Msa0182250 | 0.959915 | 5.694835e-118 | -8.615850e-47 |
| Msa0043480 | Msa0729350 | 0.811850 | 5.696464e-51 | -8.615850e-47 |
| Msa0043480 | Msa1224940 | 0.979490 | 4.410395e-148 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0043480 | MtrunA17_Chr1g0209531 | 98.297 | 411 | 7 | 0 | 1 | 411 | 1 | 411 | 0.0 | 842 |
| Msa0043480 | MtrunA17_Chr5g0423131 | 68.542 | 391 | 120 | 2 | 5 | 393 | 1 | 390 | 0.0 | 564 |
| Msa0043480 | MtrunA17_Chr6g0484141 | 54.048 | 420 | 161 | 7 | 5 | 393 | 1 | 419 | 9.57e-159 | 454 |
| Msa0043480 | MtrunA17_Chr5g0394961 | 53.207 | 421 | 160 | 8 | 8 | 393 | 3 | 421 | 7.66e-150 | 431 |
| Msa0043480 | MtrunA17_Chr3g0136091 | 48.293 | 410 | 172 | 7 | 5 | 393 | 3 | 393 | 1.35e-130 | 381 |
| Msa0043480 | MtrunA17_Chr1g0151841 | 55.696 | 316 | 135 | 5 | 82 | 393 | 63 | 377 | 2.22e-130 | 380 |
| Msa0043480 | MtrunA17_Chr2g0276861 | 54.369 | 309 | 138 | 2 | 87 | 393 | 131 | 438 | 8.73e-122 | 360 |
| Msa0043480 | MtrunA17_Chr8g0341461 | 53.896 | 308 | 138 | 4 | 87 | 391 | 105 | 411 | 1.99e-117 | 348 |
| Msa0043480 | MtrunA17_Chr5g0394981 | 64.486 | 214 | 74 | 2 | 181 | 393 | 2 | 214 | 1.12e-97 | 290 |
| Msa0043480 | MtrunA17_Chr4g0073871 | 61.682 | 214 | 80 | 2 | 181 | 393 | 9 | 221 | 2.21e-91 | 275 |
| Msa0043480 | MtrunA17_Chr1g0148241 | 39.418 | 378 | 187 | 9 | 32 | 384 | 30 | 390 | 1.99e-77 | 245 |
| Msa0043480 | MtrunA17_Chr3g0138871 | 41.486 | 323 | 151 | 6 | 91 | 384 | 58 | 371 | 2.73e-74 | 236 |
| Msa0043480 | MtrunA17_Chr4g0071911 | 40.120 | 334 | 166 | 8 | 89 | 399 | 72 | 394 | 3.43e-72 | 231 |
| Msa0043480 | MtrunA17_Chr2g0298501 | 41.590 | 327 | 156 | 9 | 87 | 386 | 68 | 386 | 2.50e-69 | 224 |
| Msa0043480 | MtrunA17_Chr2g0298511 | 41.754 | 285 | 140 | 6 | 124 | 386 | 97 | 377 | 1.18e-67 | 219 |
| Msa0043480 | MtrunA17_Chr2g0289021 | 36.593 | 317 | 157 | 9 | 109 | 384 | 46 | 359 | 7.88e-52 | 178 |
| Msa0043480 | MtrunA17_Chr8g0384601 | 35.714 | 308 | 149 | 9 | 124 | 387 | 55 | 357 | 1.92e-50 | 174 |
| Msa0043480 | MtrunA17_Chr1g0170231 | 34.483 | 319 | 178 | 8 | 95 | 391 | 33 | 342 | 6.21e-47 | 164 |
| Msa0043480 | MtrunA17_Chr3g0137661 | 36.102 | 313 | 183 | 8 | 92 | 391 | 66 | 374 | 1.02e-45 | 162 |
| Msa0043480 | MtrunA17_Chr4g0073881 | 42.995 | 207 | 84 | 6 | 8 | 181 | 3 | 208 | 1.12e-44 | 154 |
| Msa0043480 | MtrunA17_Chr1g0170151 | 35.897 | 312 | 172 | 9 | 99 | 391 | 39 | 341 | 1.51e-40 | 147 |
| Msa0043480 | MtrunA17_Chr2g0322161 | 35.333 | 300 | 149 | 12 | 125 | 391 | 78 | 365 | 3.81e-39 | 144 |
| Msa0043480 | MtrunA17_Chr5g0394971 | 62.791 | 86 | 31 | 1 | 97 | 181 | 1 | 86 | 6.75e-33 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0043480 | AT1G68390.1 | 64.744 | 312 | 105 | 4 | 86 | 393 | 98 | 408 | 3.88e-149 | 429 |
| Msa0043480 | AT5G11730.1 | 56.958 | 309 | 130 | 3 | 87 | 393 | 79 | 386 | 6.59e-131 | 382 |
| Msa0043480 | AT3G21310.1 | 55.183 | 328 | 142 | 4 | 70 | 393 | 57 | 383 | 2.97e-129 | 377 |
| Msa0043480 | AT3G21310.3 | 55.183 | 328 | 142 | 4 | 70 | 393 | 57 | 383 | 2.97e-129 | 377 |
| Msa0043480 | AT1G68380.1 | 53.406 | 367 | 160 | 6 | 33 | 393 | 31 | 392 | 4.06e-129 | 377 |
| Msa0043480 | AT1G73810.1 | 51.351 | 407 | 173 | 8 | 8 | 393 | 16 | 418 | 3.63e-127 | 374 |
| Msa0043480 | AT5G25970.1 | 56.026 | 307 | 132 | 3 | 87 | 391 | 80 | 385 | 8.33e-126 | 369 |
| Msa0043480 | AT5G25970.2 | 56.026 | 307 | 132 | 3 | 87 | 391 | 80 | 385 | 8.33e-126 | 369 |
| Msa0043480 | AT5G25970.3 | 56.026 | 307 | 132 | 3 | 87 | 391 | 80 | 385 | 8.33e-126 | 369 |
| Msa0043480 | AT1G10880.1 | 59.107 | 291 | 116 | 3 | 99 | 388 | 93 | 381 | 1.25e-124 | 366 |
| Msa0043480 | AT1G10280.1 | 44.975 | 398 | 189 | 5 | 25 | 393 | 16 | 412 | 4.51e-123 | 363 |
| Msa0043480 | AT1G51770.1 | 53.012 | 332 | 147 | 5 | 70 | 393 | 62 | 392 | 3.34e-121 | 358 |
| Msa0043480 | AT5G16170.1 | 46.684 | 377 | 179 | 5 | 35 | 393 | 37 | 409 | 9.28e-117 | 347 |
| Msa0043480 | AT1G51770.2 | 48.193 | 332 | 136 | 6 | 70 | 393 | 62 | 365 | 3.27e-104 | 313 |
| Msa0043480 | AT4G31350.4 | 42.014 | 288 | 139 | 4 | 124 | 388 | 88 | 370 | 3.92e-74 | 236 |
| Msa0043480 | AT4G31350.1 | 42.014 | 288 | 139 | 4 | 124 | 388 | 88 | 370 | 3.92e-74 | 236 |
| Msa0043480 | AT4G31350.2 | 42.014 | 288 | 139 | 4 | 124 | 388 | 88 | 370 | 3.92e-74 | 236 |
| Msa0043480 | AT4G30060.2 | 39.394 | 330 | 160 | 7 | 86 | 386 | 71 | 389 | 1.86e-71 | 230 |
| Msa0043480 | AT4G30060.1 | 39.394 | 330 | 160 | 7 | 86 | 386 | 71 | 389 | 1.86e-71 | 230 |
| Msa0043480 | AT2G19160.2 | 39.024 | 328 | 168 | 8 | 86 | 388 | 68 | 388 | 2.46e-71 | 229 |
| Msa0043480 | AT2G19160.1 | 39.024 | 328 | 168 | 8 | 86 | 388 | 68 | 388 | 2.46e-71 | 229 |
| Msa0043480 | AT4G31350.3 | 40.000 | 285 | 144 | 3 | 124 | 388 | 88 | 365 | 1.67e-69 | 224 |
| Msa0043480 | AT4G25870.1 | 40.645 | 310 | 159 | 5 | 102 | 388 | 75 | 382 | 5.56e-69 | 223 |
| Msa0043480 | AT3G21310.2 | 54.359 | 195 | 86 | 2 | 70 | 261 | 57 | 251 | 3.30e-68 | 217 |
| Msa0043480 | AT5G57270.3 | 38.182 | 330 | 151 | 7 | 84 | 388 | 80 | 381 | 1.28e-65 | 214 |
| Msa0043480 | AT5G57270.1 | 38.182 | 330 | 151 | 7 | 84 | 388 | 80 | 381 | 1.28e-65 | 214 |
| Msa0043480 | AT5G57270.4 | 38.182 | 330 | 151 | 7 | 84 | 388 | 80 | 381 | 1.28e-65 | 214 |
| Msa0043480 | AT5G57270.5 | 38.182 | 330 | 151 | 7 | 84 | 388 | 80 | 381 | 1.28e-65 | 214 |
| Msa0043480 | AT5G57270.2 | 38.182 | 330 | 151 | 7 | 84 | 388 | 80 | 381 | 1.28e-65 | 214 |
| Msa0043480 | AT5G25330.1 | 33.773 | 379 | 214 | 13 | 30 | 391 | 1 | 359 | 3.09e-53 | 181 |
| Msa0043480 | AT1G62305.1 | 36.218 | 312 | 150 | 10 | 115 | 384 | 60 | 364 | 1.62e-49 | 172 |
| Msa0043480 | AT3G52060.1 | 34.194 | 310 | 178 | 10 | 99 | 391 | 43 | 343 | 3.85e-49 | 170 |
| Msa0043480 | AT5G14550.3 | 35.275 | 309 | 151 | 8 | 121 | 385 | 61 | 364 | 6.13e-49 | 170 |
| Msa0043480 | AT5G14550.1 | 35.161 | 310 | 152 | 8 | 120 | 385 | 60 | 364 | 8.10e-49 | 170 |
| Msa0043480 | AT5G14550.2 | 37.452 | 259 | 140 | 6 | 121 | 360 | 61 | 316 | 7.30e-48 | 167 |
| Msa0043480 | AT1G11940.1 | 37.075 | 294 | 138 | 9 | 124 | 375 | 73 | 361 | 1.25e-47 | 167 |
| Msa0043480 | AT1G62305.3 | 41.629 | 221 | 102 | 6 | 115 | 313 | 60 | 275 | 7.95e-45 | 158 |
| Msa0043480 | AT5G22070.1 | 33.136 | 338 | 169 | 14 | 95 | 391 | 38 | 359 | 1.09e-42 | 154 |
| Msa0043480 | AT1G11940.2 | 46.067 | 178 | 89 | 4 | 124 | 297 | 73 | 247 | 8.86e-42 | 149 |
| Msa0043480 | AT5G14550.4 | 35.862 | 290 | 148 | 10 | 121 | 385 | 61 | 337 | 6.47e-41 | 148 |
| Msa0043480 | AT4G32290.1 | 32.905 | 389 | 212 | 14 | 33 | 391 | 7 | 376 | 6.24e-37 | 139 |
| Msa0043480 | AT1G62305.2 | 32.692 | 312 | 137 | 10 | 115 | 384 | 60 | 340 | 9.50e-36 | 135 |
Find 64 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCACCTATCTCCTAATTT+TGG | 0.184517 | 1_1:-74609626 | Msa0043480:CDS |
| GATAGTAACTTATGTTTATT+AGG | 0.206271 | 1_1:+74607871 | None:intergenic |
| CATTCTAATCCTTCTTATAA+TGG | 0.257546 | 1_1:-74609244 | Msa0043480:CDS |
| TCATCCATATCATGCATAAT+TGG | 0.279929 | 1_1:+74609433 | None:intergenic |
| TCCTCCAATTATGCATGATA+TGG | 0.306477 | 1_1:-74609437 | Msa0043480:CDS |
| TTAAACCAAATACCAAAATT+AGG | 0.314110 | 1_1:+74609614 | None:intergenic |
| CTTTGGTTAGAATAAAGTTT+GGG | 0.319095 | 1_1:-74608140 | Msa0043480:CDS |
| GTTTATTAAGTAAGAATAGA+TGG | 0.333539 | 1_1:+74608392 | None:intergenic |
| CTCTGTCCATTTCAAACCAT+TGG | 0.344014 | 1_1:+74608259 | None:intergenic |
| TTGGGGAAGGAAATTCAAAT+AGG | 0.374868 | 1_1:-74608122 | Msa0043480:CDS |
| GGGAAACCTCGGGTAACATT+TGG | 0.376467 | 1_1:+74608304 | None:intergenic |
| GGTGACAAATGTTGTGTTCT+TGG | 0.377523 | 1_1:+74609511 | None:intergenic |
| CGTTCTTGTTTCACCGCAAT+CGG | 0.394209 | 1_1:+74609487 | None:intergenic |
| TGACTTGGGTTGACTGGTCA+AGG | 0.394569 | 1_1:-74608095 | Msa0043480:CDS |
| ACTTTGGTTAGAATAAAGTT+TGG | 0.400537 | 1_1:-74608141 | Msa0043480:CDS |
| TCTTTGATATAGAGATTGAT+TGG | 0.407880 | 1_1:+74609680 | None:intergenic |
| AAGAAATGCAAGTATAATAA+TGG | 0.408664 | 1_1:-74608003 | Msa0043480:CDS |
| AACTTTATTCTAACCAAAGT+TGG | 0.411378 | 1_1:+74608144 | None:intergenic |
| GAAGTTGAAGAGTGGTATGC+AGG | 0.429293 | 1_1:+74608419 | None:intergenic |
| AAATACCAAAATTAGGAGAT+AGG | 0.433518 | 1_1:+74609621 | None:intergenic |
| AGGGTCCCAATGGTTTGAAA+TGG | 0.440613 | 1_1:-74608265 | Msa0043480:CDS |
| TCTGTCCATTTCAAACCATT+GGG | 0.442280 | 1_1:+74608260 | None:intergenic |
| TATAATGCAGGAAGTTGAAT+GGG | 0.448864 | 1_1:-74608532 | Msa0043480:intron |
| AAGAGCTTTGACAAAGTACT+AGG | 0.449050 | 1_1:+74607937 | None:intergenic |
| GCTCTTGAAGATTGCGCCTA+AGG | 0.449626 | 1_1:-74607920 | Msa0043480:CDS |
| TCCCTCAACGAATGGAGAAA+AGG | 0.452596 | 1_1:-74608285 | Msa0043480:CDS |
| GGAGTTTGACTTGGGTTGAC+TGG | 0.465504 | 1_1:-74608101 | Msa0043480:CDS |
| AGGTGAGAAAATTAATAAAG+TGG | 0.465868 | 1_1:+74609641 | None:intergenic |
| TGAACATTACTTGCCAACTT+TGG | 0.466371 | 1_1:-74608157 | Msa0043480:CDS |
| GACTTGGGTTGACTGGTCAA+GGG | 0.470853 | 1_1:-74608094 | Msa0043480:CDS |
| CTGATATGAGAACAAATCGT+TGG | 0.474721 | 1_1:+74608445 | None:intergenic |
| TGGATGATGAAGAATTGTTA+TGG | 0.474924 | 1_1:-74609417 | Msa0043480:CDS |
| CCCTCAACGAATGGAGAAAA+GGG | 0.478730 | 1_1:-74608284 | Msa0043480:CDS |
| CTATAATGCAGGAAGTTGAA+TGG | 0.492949 | 1_1:-74608533 | Msa0043480:intron |
| ACAAGAACGTGTAGGATTGA+AGG | 0.500595 | 1_1:-74609473 | Msa0043480:CDS |
| TTGGTATTTGGTTTAACACT+TGG | 0.502163 | 1_1:-74609607 | Msa0043480:CDS |
| CGACCACGACCGACCGAGCT+AGG | 0.504404 | 1_1:+74608336 | None:intergenic |
| TTCAAATAGGAGTTTGACTT+GGG | 0.504505 | 1_1:-74608109 | Msa0043480:CDS |
| ATTCAAATAGGAGTTTGACT+TGG | 0.516231 | 1_1:-74608110 | Msa0043480:CDS |
| TGTTCAAACTGCATAACCTT+AGG | 0.519351 | 1_1:+74607904 | None:intergenic |
| GATCCTAGCTCGGTCGGTCG+TGG | 0.528787 | 1_1:-74608339 | Msa0043480:CDS |
| GTTAGAATAAAGTTTGGGGA+AGG | 0.530410 | 1_1:-74608135 | Msa0043480:CDS |
| ACTTGGGTTGACTGGTCAAG+GGG | 0.535261 | 1_1:-74608093 | Msa0043480:CDS |
| CCGAGGTTTCCCTCAACGAA+TGG | 0.536541 | 1_1:-74608293 | Msa0043480:CDS |
| CGGTAGAAGAATTCCCAGTA+AGG | 0.536710 | 1_1:-74609194 | Msa0043480:intron |
| GTCTTATGATGATCCTAGCT+CGG | 0.545878 | 1_1:-74608349 | Msa0043480:CDS |
| TGCAGTTTGAACACTACGAC+AGG | 0.553841 | 1_1:-74607894 | Msa0043480:CDS |
| TGGGTTGACTGGTCAAGGGG+TGG | 0.553874 | 1_1:-74608090 | Msa0043480:CDS |
| AGCAAACAGAAAACATGCAT+TGG | 0.562151 | 1_1:+74607972 | None:intergenic |
| TCCATATCATGCATAATTGG+AGG | 0.565222 | 1_1:+74609436 | None:intergenic |
| CCATTCGTTGAGGGAAACCT+CGG | 0.566873 | 1_1:+74608293 | None:intergenic |
| ATGGACAGAGAACTTGCTCT+AGG | 0.576538 | 1_1:-74608246 | Msa0043480:CDS |
| GGGTGTGATCCATTATAAGA+AGG | 0.577180 | 1_1:+74609235 | None:intergenic |
| ACATTTGTCACCGCCGATTG+CGG | 0.594351 | 1_1:-74609500 | Msa0043480:CDS |
| CATTCGTTGAGGGAAACCTC+GGG | 0.602596 | 1_1:+74608294 | None:intergenic |
| ATATCATGCATAATTGGAGG+AGG | 0.604452 | 1_1:+74609439 | None:intergenic |
| ATGGTTGAGAAGTTGAAGAG+TGG | 0.604831 | 1_1:+74608411 | None:intergenic |
| TCTTGTTTCACCGCAATCGG+CGG | 0.617064 | 1_1:+74609490 | None:intergenic |
| AATGGAGAAAAGGGTCCCAA+TGG | 0.634468 | 1_1:-74608275 | Msa0043480:CDS |
| TTTGGTTAGAATAAAGTTTG+GGG | 0.642533 | 1_1:-74608139 | Msa0043480:CDS |
| TAGCATCCAAATGTTACCCG+AGG | 0.647404 | 1_1:-74608310 | Msa0043480:CDS |
| TATGATGATCCTAGCTCGGT+CGG | 0.674006 | 1_1:-74608345 | Msa0043480:CDS |
| ATAATGCAGGAAGTTGAATG+GGG | 0.703755 | 1_1:-74608531 | Msa0043480:intron |
| GCGGTGAAACAAGAACGTGT+AGG | 0.726920 | 1_1:-74609481 | Msa0043480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATGTTACATTTTAATTTT+TGG | - | chr1_1:74608436-74608455 | Msa0043480:CDS | 10.0% |
| !!! | ATATGTTACATTTTAATTTT+TGG | - | chr1_1:74608436-74608455 | Msa0043480:CDS | 10.0% |
| !! | TATTATGACAGAAAAAATGA+AGG | - | chr1_1:74607855-74607874 | Msa0043480:CDS | 20.0% |
| !! | ATTATGACAGAAAAAATGAA+GGG | - | chr1_1:74607856-74607875 | Msa0043480:CDS | 20.0% |
| !! | TTAAACCAAATACCAAAATT+AGG | + | chr1_1:74607963-74607982 | None:intergenic | 20.0% |
| !! | ATTGAAAAATGATTATTGCT+TGG | - | chr1_1:74608486-74608505 | Msa0043480:CDS | 20.0% |
| !! | TATACAAATTGCTTAATAGA+AGG | - | chr1_1:74608573-74608592 | Msa0043480:intron | 20.0% |
| !!! | ATTGTGAACTTTTAACAAAA+TGG | - | chr1_1:74608752-74608771 | Msa0043480:intron | 20.0% |
| !! | GTTTATTAAGTAAGAATAGA+TGG | + | chr1_1:74609185-74609204 | None:intergenic | 20.0% |
| !!! | TGATGTTAATGTTAAGTTTT+TGG | - | chr1_1:74609534-74609553 | Msa0043480:CDS | 20.0% |
| !! | AAGAAATGCAAGTATAATAA+TGG | - | chr1_1:74609571-74609590 | Msa0043480:CDS | 20.0% |
| !! | GATAGTAACTTATGTTTATT+AGG | + | chr1_1:74609706-74609725 | None:intergenic | 20.0% |
| !! | TATTATGACAGAAAAAATGA+AGG | - | chr1_1:74607855-74607874 | Msa0043480:CDS | 20.0% |
| !! | ATTATGACAGAAAAAATGAA+GGG | - | chr1_1:74607856-74607875 | Msa0043480:CDS | 20.0% |
| !! | TTAAACCAAATACCAAAATT+AGG | + | chr1_1:74607963-74607982 | None:intergenic | 20.0% |
| !! | ATTGAAAAATGATTATTGCT+TGG | - | chr1_1:74608486-74608505 | Msa0043480:CDS | 20.0% |
| !! | TATACAAATTGCTTAATAGA+AGG | - | chr1_1:74608573-74608592 | Msa0043480:intron | 20.0% |
| !!! | ATTGTGAACTTTTAACAAAA+TGG | - | chr1_1:74608752-74608771 | Msa0043480:intron | 20.0% |
| !! | GTTTATTAAGTAAGAATAGA+TGG | + | chr1_1:74609185-74609204 | None:intergenic | 20.0% |
| !!! | TGATGTTAATGTTAAGTTTT+TGG | - | chr1_1:74609534-74609553 | Msa0043480:CDS | 20.0% |
| !! | AAGAAATGCAAGTATAATAA+TGG | - | chr1_1:74609571-74609590 | Msa0043480:CDS | 20.0% |
| !! | GATAGTAACTTATGTTTATT+AGG | + | chr1_1:74609706-74609725 | None:intergenic | 20.0% |
| ! | TCTTTGATATAGAGATTGAT+TGG | + | chr1_1:74607897-74607916 | None:intergenic | 25.0% |
| ! | AGGTGAGAAAATTAATAAAG+TGG | + | chr1_1:74607936-74607955 | None:intergenic | 25.0% |
| ! | AAATACCAAAATTAGGAGAT+AGG | + | chr1_1:74607956-74607975 | None:intergenic | 25.0% |
| !!! | TATCTCCTAATTTTGGTATT+TGG | - | chr1_1:74607955-74607974 | Msa0043480:CDS | 25.0% |
| !! | AAAAACATGAATGCAACTTT+TGG | + | chr1_1:74608231-74608250 | None:intergenic | 25.0% |
| ! | CATTCTAATCCTTCTTATAA+TGG | - | chr1_1:74608330-74608349 | Msa0043480:CDS | 25.0% |
| ! | TTGCTTGGATTTAATTCAAA+TGG | - | chr1_1:74608501-74608520 | Msa0043480:CDS | 25.0% |
| !!! | TTTTAGCTAGAATGATGATA+TGG | - | chr1_1:74608698-74608717 | Msa0043480:intron | 25.0% |
| !! | CTTTTAACAAAATGGTACTA+TGG | - | chr1_1:74608760-74608779 | Msa0043480:intron | 25.0% |
| !!! | AAATAAACAGTGATGGATAT+TGG | - | chr1_1:74609005-74609024 | Msa0043480:intron | 25.0% |
| ! | TTGCAATATTCTTGAAAAAC+TGG | + | chr1_1:74609379-74609398 | None:intergenic | 25.0% |
| !!! | GTTTTTCAAGAATATTGCAA+AGG | - | chr1_1:74609379-74609398 | Msa0043480:CDS | 25.0% |
| ! | AACTTTATTCTAACCAAAGT+TGG | + | chr1_1:74609433-74609452 | None:intergenic | 25.0% |
| ! | ACTTTGGTTAGAATAAAGTT+TGG | - | chr1_1:74609433-74609452 | Msa0043480:CDS | 25.0% |
| ! | CTTTGGTTAGAATAAAGTTT+GGG | - | chr1_1:74609434-74609453 | Msa0043480:CDS | 25.0% |
| ! | TTTGGTTAGAATAAAGTTTG+GGG | - | chr1_1:74609435-74609454 | Msa0043480:CDS | 25.0% |
| !!! | TTAAGTTTTTGGAGAGATTA+AGG | - | chr1_1:74609545-74609564 | Msa0043480:CDS | 25.0% |
| ! | TCTTTGATATAGAGATTGAT+TGG | + | chr1_1:74607897-74607916 | None:intergenic | 25.0% |
| ! | AGGTGAGAAAATTAATAAAG+TGG | + | chr1_1:74607936-74607955 | None:intergenic | 25.0% |
| ! | AAATACCAAAATTAGGAGAT+AGG | + | chr1_1:74607956-74607975 | None:intergenic | 25.0% |
| !!! | TATCTCCTAATTTTGGTATT+TGG | - | chr1_1:74607955-74607974 | Msa0043480:CDS | 25.0% |
| !! | AAAAACATGAATGCAACTTT+TGG | + | chr1_1:74608231-74608250 | None:intergenic | 25.0% |
| ! | CATTCTAATCCTTCTTATAA+TGG | - | chr1_1:74608330-74608349 | Msa0043480:CDS | 25.0% |
| ! | TTGCTTGGATTTAATTCAAA+TGG | - | chr1_1:74608501-74608520 | Msa0043480:CDS | 25.0% |
| !!! | TTTTAGCTAGAATGATGATA+TGG | - | chr1_1:74608698-74608717 | Msa0043480:intron | 25.0% |
| !! | CTTTTAACAAAATGGTACTA+TGG | - | chr1_1:74608760-74608779 | Msa0043480:intron | 25.0% |
| !!! | AAATAAACAGTGATGGATAT+TGG | - | chr1_1:74609005-74609024 | Msa0043480:intron | 25.0% |
| ! | TTGCAATATTCTTGAAAAAC+TGG | + | chr1_1:74609379-74609398 | None:intergenic | 25.0% |
| !!! | GTTTTTCAAGAATATTGCAA+AGG | - | chr1_1:74609379-74609398 | Msa0043480:CDS | 25.0% |
| ! | AACTTTATTCTAACCAAAGT+TGG | + | chr1_1:74609433-74609452 | None:intergenic | 25.0% |
| ! | ACTTTGGTTAGAATAAAGTT+TGG | - | chr1_1:74609433-74609452 | Msa0043480:CDS | 25.0% |
| ! | CTTTGGTTAGAATAAAGTTT+GGG | - | chr1_1:74609434-74609453 | Msa0043480:CDS | 25.0% |
| ! | TTTGGTTAGAATAAAGTTTG+GGG | - | chr1_1:74609435-74609454 | Msa0043480:CDS | 25.0% |
| !!! | TTAAGTTTTTGGAGAGATTA+AGG | - | chr1_1:74609545-74609564 | Msa0043480:CDS | 25.0% |
| ! | TTGGTATTTGGTTTAACACT+TGG | - | chr1_1:74607967-74607986 | Msa0043480:CDS | 30.0% |
| TCATCCATATCATGCATAAT+TGG | + | chr1_1:74608144-74608163 | None:intergenic | 30.0% | |
| TGGATGATGAAGAATTGTTA+TGG | - | chr1_1:74608157-74608176 | Msa0043480:CDS | 30.0% | |
| !! | TTGCATTCATGTTTTTGACA+AGG | - | chr1_1:74608235-74608254 | Msa0043480:CDS | 30.0% |
| !! | TGCATTCATGTTTTTGACAA+GGG | - | chr1_1:74608236-74608255 | Msa0043480:CDS | 30.0% |
| !! | AGTTTTTCAAAGGTCATGAA+GGG | - | chr1_1:74608289-74608308 | Msa0043480:CDS | 30.0% |
| AAAAACTAACTGACCTTACT+GGG | + | chr1_1:74608396-74608415 | None:intergenic | 30.0% | |
| AAAAAACTAACTGACCTTAC+TGG | + | chr1_1:74608397-74608416 | None:intergenic | 30.0% | |
| CAGATTAAGACAATAGAGAA+TGG | + | chr1_1:74608463-74608482 | None:intergenic | 30.0% | |
| ! | ATATAACAAGACTTTTGCAC+AGG | + | chr1_1:74608546-74608565 | None:intergenic | 30.0% |
| ! | ATGCATACTTGTTTCTTTGT+AGG | - | chr1_1:74608944-74608963 | Msa0043480:intron | 30.0% |
| TCTCTGTTGTAATAAGTTAC+TGG | + | chr1_1:74608986-74609005 | None:intergenic | 30.0% | |
| AACAGAGAAATAAACAGTGA+TGG | - | chr1_1:74608998-74609017 | Msa0043480:intron | 30.0% | |
| TATAATGCAGGAAGTTGAAT+GGG | - | chr1_1:74609042-74609061 | Msa0043480:intron | 30.0% | |
| ATTCAAATAGGAGTTTGACT+TGG | - | chr1_1:74609464-74609483 | Msa0043480:CDS | 30.0% | |
| ! | TTCAAATAGGAGTTTGACTT+GGG | - | chr1_1:74609465-74609484 | Msa0043480:CDS | 30.0% |
| ! | TTGGTATTTGGTTTAACACT+TGG | - | chr1_1:74607967-74607986 | Msa0043480:CDS | 30.0% |
| TCATCCATATCATGCATAAT+TGG | + | chr1_1:74608144-74608163 | None:intergenic | 30.0% | |
| TGGATGATGAAGAATTGTTA+TGG | - | chr1_1:74608157-74608176 | Msa0043480:CDS | 30.0% | |
| !! | TTGCATTCATGTTTTTGACA+AGG | - | chr1_1:74608235-74608254 | Msa0043480:CDS | 30.0% |
| !! | TGCATTCATGTTTTTGACAA+GGG | - | chr1_1:74608236-74608255 | Msa0043480:CDS | 30.0% |
| !! | AGTTTTTCAAAGGTCATGAA+GGG | - | chr1_1:74608289-74608308 | Msa0043480:CDS | 30.0% |
| AAAAACTAACTGACCTTACT+GGG | + | chr1_1:74608396-74608415 | None:intergenic | 30.0% | |
| AAAAAACTAACTGACCTTAC+TGG | + | chr1_1:74608397-74608416 | None:intergenic | 30.0% | |
| CAGATTAAGACAATAGAGAA+TGG | + | chr1_1:74608463-74608482 | None:intergenic | 30.0% | |
| ! | ATATAACAAGACTTTTGCAC+AGG | + | chr1_1:74608546-74608565 | None:intergenic | 30.0% |
| ! | ATGCATACTTGTTTCTTTGT+AGG | - | chr1_1:74608944-74608963 | Msa0043480:intron | 30.0% |
| TCTCTGTTGTAATAAGTTAC+TGG | + | chr1_1:74608986-74609005 | None:intergenic | 30.0% | |
| AACAGAGAAATAAACAGTGA+TGG | - | chr1_1:74608998-74609017 | Msa0043480:intron | 30.0% | |
| TATAATGCAGGAAGTTGAAT+GGG | - | chr1_1:74609042-74609061 | Msa0043480:intron | 30.0% | |
| ATTCAAATAGGAGTTTGACT+TGG | - | chr1_1:74609464-74609483 | Msa0043480:CDS | 30.0% | |
| ! | TTCAAATAGGAGTTTGACTT+GGG | - | chr1_1:74609465-74609484 | Msa0043480:CDS | 30.0% |
| ! | TCTCACCTATCTCCTAATTT+TGG | - | chr1_1:74607948-74607967 | Msa0043480:CDS | 35.0% |
| ATATCATGCATAATTGGAGG+AGG | + | chr1_1:74608138-74608157 | None:intergenic | 35.0% | |
| TCCTCCAATTATGCATGATA+TGG | - | chr1_1:74608137-74608156 | Msa0043480:CDS | 35.0% | |
| TCCATATCATGCATAATTGG+AGG | + | chr1_1:74608141-74608160 | None:intergenic | 35.0% | |
| !!! | CTTTTGGAACTCGTTCAAAA+GGG | + | chr1_1:74608215-74608234 | None:intergenic | 35.0% |
| !!! | ACTTTTGGAACTCGTTCAAA+AGG | + | chr1_1:74608216-74608235 | None:intergenic | 35.0% |
| !! | GCATTCATGTTTTTGACAAG+GGG | - | chr1_1:74608237-74608256 | Msa0043480:CDS | 35.0% |
| TTGAAAAACTGTTCCCACAA+AGG | + | chr1_1:74608279-74608298 | None:intergenic | 35.0% | |
| !! | TTGTGGGAACAGTTTTTCAA+AGG | - | chr1_1:74608279-74608298 | Msa0043480:CDS | 35.0% |
| !! | CAGTTTTTCAAAGGTCATGA+AGG | - | chr1_1:74608288-74608307 | Msa0043480:CDS | 35.0% |
| ATTCTTCTACCGTGAAAAAC+AGG | + | chr1_1:74608372-74608391 | None:intergenic | 35.0% | |
| AAGCCAAGTGAAGAGTAAAA+TGG | - | chr1_1:74608609-74608628 | Msa0043480:intron | 35.0% | |
| AGCCAAGTGAAGAGTAAAAT+GGG | - | chr1_1:74608610-74608629 | Msa0043480:intron | 35.0% | |
| CAAAATTGTCCAGTCAAACA+AGG | - | chr1_1:74608884-74608903 | Msa0043480:intron | 35.0% | |
| ! | ACTTTAAGTCCTTGTTTGAC+TGG | + | chr1_1:74608896-74608915 | None:intergenic | 35.0% |
| AACTAACCCTTCTATAATGC+AGG | - | chr1_1:74609030-74609049 | Msa0043480:intron | 35.0% | |
| CAACTTCCTGCATTATAGAA+GGG | + | chr1_1:74609039-74609058 | None:intergenic | 35.0% | |
| TCAACTTCCTGCATTATAGA+AGG | + | chr1_1:74609040-74609059 | None:intergenic | 35.0% | |
| CTATAATGCAGGAAGTTGAA+TGG | - | chr1_1:74609041-74609060 | Msa0043480:intron | 35.0% | |
| ATAATGCAGGAAGTTGAATG+GGG | - | chr1_1:74609043-74609062 | Msa0043480:intron | 35.0% | |
| CTGATATGAGAACAAATCGT+TGG | + | chr1_1:74609132-74609151 | None:intergenic | 35.0% | |
| TCTGTCCATTTCAAACCATT+GGG | + | chr1_1:74609317-74609336 | None:intergenic | 35.0% | |
| TGAACATTACTTGCCAACTT+TGG | - | chr1_1:74609417-74609436 | Msa0043480:CDS | 35.0% | |
| GTTAGAATAAAGTTTGGGGA+AGG | - | chr1_1:74609439-74609458 | Msa0043480:CDS | 35.0% | |
| TTGGGGAAGGAAATTCAAAT+AGG | - | chr1_1:74609452-74609471 | Msa0043480:CDS | 35.0% | |
| TCAGATCTCAAAAAATGAGC+TGG | + | chr1_1:74609517-74609536 | None:intergenic | 35.0% | |
| AGCAAACAGAAAACATGCAT+TGG | + | chr1_1:74609605-74609624 | None:intergenic | 35.0% | |
| ! | ATGCATGTTTTCTGTTTGCT+AGG | - | chr1_1:74609605-74609624 | Msa0043480:CDS | 35.0% |
| ! | AAGAGCTTTGACAAAGTACT+AGG | + | chr1_1:74609640-74609659 | None:intergenic | 35.0% |
| TGTTCAAACTGCATAACCTT+AGG | + | chr1_1:74609673-74609692 | None:intergenic | 35.0% | |
| ! | TCTCACCTATCTCCTAATTT+TGG | - | chr1_1:74607948-74607967 | Msa0043480:CDS | 35.0% |
| ATATCATGCATAATTGGAGG+AGG | + | chr1_1:74608138-74608157 | None:intergenic | 35.0% | |
| TCCTCCAATTATGCATGATA+TGG | - | chr1_1:74608137-74608156 | Msa0043480:CDS | 35.0% | |
| TCCATATCATGCATAATTGG+AGG | + | chr1_1:74608141-74608160 | None:intergenic | 35.0% | |
| !!! | CTTTTGGAACTCGTTCAAAA+GGG | + | chr1_1:74608215-74608234 | None:intergenic | 35.0% |
| !!! | ACTTTTGGAACTCGTTCAAA+AGG | + | chr1_1:74608216-74608235 | None:intergenic | 35.0% |
| !! | GCATTCATGTTTTTGACAAG+GGG | - | chr1_1:74608237-74608256 | Msa0043480:CDS | 35.0% |
| TTGAAAAACTGTTCCCACAA+AGG | + | chr1_1:74608279-74608298 | None:intergenic | 35.0% | |
| !! | TTGTGGGAACAGTTTTTCAA+AGG | - | chr1_1:74608279-74608298 | Msa0043480:CDS | 35.0% |
| !! | CAGTTTTTCAAAGGTCATGA+AGG | - | chr1_1:74608288-74608307 | Msa0043480:CDS | 35.0% |
| ATTCTTCTACCGTGAAAAAC+AGG | + | chr1_1:74608372-74608391 | None:intergenic | 35.0% | |
| AAGCCAAGTGAAGAGTAAAA+TGG | - | chr1_1:74608609-74608628 | Msa0043480:intron | 35.0% | |
| AGCCAAGTGAAGAGTAAAAT+GGG | - | chr1_1:74608610-74608629 | Msa0043480:intron | 35.0% | |
| CAAAATTGTCCAGTCAAACA+AGG | - | chr1_1:74608884-74608903 | Msa0043480:intron | 35.0% | |
| ! | ACTTTAAGTCCTTGTTTGAC+TGG | + | chr1_1:74608896-74608915 | None:intergenic | 35.0% |
| AACTAACCCTTCTATAATGC+AGG | - | chr1_1:74609030-74609049 | Msa0043480:intron | 35.0% | |
| CAACTTCCTGCATTATAGAA+GGG | + | chr1_1:74609039-74609058 | None:intergenic | 35.0% | |
| TCAACTTCCTGCATTATAGA+AGG | + | chr1_1:74609040-74609059 | None:intergenic | 35.0% | |
| CTATAATGCAGGAAGTTGAA+TGG | - | chr1_1:74609041-74609060 | Msa0043480:intron | 35.0% | |
| ATAATGCAGGAAGTTGAATG+GGG | - | chr1_1:74609043-74609062 | Msa0043480:intron | 35.0% | |
| CTGATATGAGAACAAATCGT+TGG | + | chr1_1:74609132-74609151 | None:intergenic | 35.0% | |
| TCTGTCCATTTCAAACCATT+GGG | + | chr1_1:74609317-74609336 | None:intergenic | 35.0% | |
| TGAACATTACTTGCCAACTT+TGG | - | chr1_1:74609417-74609436 | Msa0043480:CDS | 35.0% | |
| GTTAGAATAAAGTTTGGGGA+AGG | - | chr1_1:74609439-74609458 | Msa0043480:CDS | 35.0% | |
| TTGGGGAAGGAAATTCAAAT+AGG | - | chr1_1:74609452-74609471 | Msa0043480:CDS | 35.0% | |
| TCAGATCTCAAAAAATGAGC+TGG | + | chr1_1:74609517-74609536 | None:intergenic | 35.0% | |
| AGCAAACAGAAAACATGCAT+TGG | + | chr1_1:74609605-74609624 | None:intergenic | 35.0% | |
| ! | ATGCATGTTTTCTGTTTGCT+AGG | - | chr1_1:74609605-74609624 | Msa0043480:CDS | 35.0% |
| ! | AAGAGCTTTGACAAAGTACT+AGG | + | chr1_1:74609640-74609659 | None:intergenic | 35.0% |
| TGTTCAAACTGCATAACCTT+AGG | + | chr1_1:74609673-74609692 | None:intergenic | 35.0% | |
| GGTGACAAATGTTGTGTTCT+TGG | + | chr1_1:74608066-74608085 | None:intergenic | 40.0% | |
| ACAAGAACGTGTAGGATTGA+AGG | - | chr1_1:74608101-74608120 | Msa0043480:CDS | 40.0% | |
| !!! | TGTGTTTTTGGCACCTTTGT+GGG | - | chr1_1:74608263-74608282 | Msa0043480:CDS | 40.0% |
| GGGTGTGATCCATTATAAGA+AGG | + | chr1_1:74608342-74608361 | None:intergenic | 40.0% | |
| GCCAAGTGAAGAGTAAAATG+GGG | - | chr1_1:74608611-74608630 | Msa0043480:intron | 40.0% | |
| ! | TCCCCATTTTACTCTTCACT+TGG | + | chr1_1:74608615-74608634 | None:intergenic | 40.0% |
| GTGAAGAGTAAAATGGGGAA+AGG | - | chr1_1:74608616-74608635 | Msa0043480:intron | 40.0% | |
| ATGGTTGAGAAGTTGAAGAG+TGG | + | chr1_1:74609166-74609185 | None:intergenic | 40.0% | |
| GTCTTATGATGATCCTAGCT+CGG | - | chr1_1:74609225-74609244 | Msa0043480:CDS | 40.0% | |
| CTCTGTCCATTTCAAACCAT+TGG | + | chr1_1:74609318-74609337 | None:intergenic | 40.0% | |
| CTCAAAAAATGAGCTGGATG+TGG | + | chr1_1:74609511-74609530 | None:intergenic | 40.0% | |
| GGTGACAAATGTTGTGTTCT+TGG | + | chr1_1:74608066-74608085 | None:intergenic | 40.0% | |
| ACAAGAACGTGTAGGATTGA+AGG | - | chr1_1:74608101-74608120 | Msa0043480:CDS | 40.0% | |
| !!! | TGTGTTTTTGGCACCTTTGT+GGG | - | chr1_1:74608263-74608282 | Msa0043480:CDS | 40.0% |
| GGGTGTGATCCATTATAAGA+AGG | + | chr1_1:74608342-74608361 | None:intergenic | 40.0% | |
| GCCAAGTGAAGAGTAAAATG+GGG | - | chr1_1:74608611-74608630 | Msa0043480:intron | 40.0% | |
| ! | TCCCCATTTTACTCTTCACT+TGG | + | chr1_1:74608615-74608634 | None:intergenic | 40.0% |
| GTGAAGAGTAAAATGGGGAA+AGG | - | chr1_1:74608616-74608635 | Msa0043480:intron | 40.0% | |
| ATGGTTGAGAAGTTGAAGAG+TGG | + | chr1_1:74609166-74609185 | None:intergenic | 40.0% | |
| GTCTTATGATGATCCTAGCT+CGG | - | chr1_1:74609225-74609244 | Msa0043480:CDS | 40.0% | |
| CTCTGTCCATTTCAAACCAT+TGG | + | chr1_1:74609318-74609337 | None:intergenic | 40.0% | |
| CTCAAAAAATGAGCTGGATG+TGG | + | chr1_1:74609511-74609530 | None:intergenic | 40.0% | |
| ! | CGTTCTTGTTTCACCGCAAT+CGG | + | chr1_1:74608090-74608109 | None:intergenic | 45.0% |
| !!! | CTGTGTTTTTGGCACCTTTG+TGG | - | chr1_1:74608262-74608281 | Msa0043480:CDS | 45.0% |
| CGTGAAAAACAGGACTCTCA+GGG | + | chr1_1:74608362-74608381 | None:intergenic | 45.0% | |
| !! | CCTGAGAGTCCTGTTTTTCA+CGG | - | chr1_1:74608360-74608379 | Msa0043480:CDS | 45.0% |
| CGGTAGAAGAATTCCCAGTA+AGG | - | chr1_1:74608380-74608399 | Msa0043480:CDS | 45.0% | |
| GAAGTTGAAGAGTGGTATGC+AGG | + | chr1_1:74609158-74609177 | None:intergenic | 45.0% | |
| TATGATGATCCTAGCTCGGT+CGG | - | chr1_1:74609229-74609248 | Msa0043480:CDS | 45.0% | |
| TAGCATCCAAATGTTACCCG+AGG | - | chr1_1:74609264-74609283 | Msa0043480:CDS | 45.0% | |
| TCCCTCAACGAATGGAGAAA+AGG | - | chr1_1:74609289-74609308 | Msa0043480:CDS | 45.0% | |
| ! | CCCTTTTCTCCATTCGTTGA+GGG | + | chr1_1:74609293-74609312 | None:intergenic | 45.0% |
| CCCTCAACGAATGGAGAAAA+GGG | - | chr1_1:74609290-74609309 | Msa0043480:CDS | 45.0% | |
| ! | ACCCTTTTCTCCATTCGTTG+AGG | + | chr1_1:74609294-74609313 | None:intergenic | 45.0% |
| AATGGAGAAAAGGGTCCCAA+TGG | - | chr1_1:74609299-74609318 | Msa0043480:CDS | 45.0% | |
| AGGGTCCCAATGGTTTGAAA+TGG | - | chr1_1:74609309-74609328 | Msa0043480:CDS | 45.0% | |
| ! | ATGGACAGAGAACTTGCTCT+AGG | - | chr1_1:74609328-74609347 | Msa0043480:CDS | 45.0% |
| TGCAGTTTGAACACTACGAC+AGG | - | chr1_1:74609680-74609699 | Msa0043480:CDS | 45.0% | |
| ! | CGTTCTTGTTTCACCGCAAT+CGG | + | chr1_1:74608090-74608109 | None:intergenic | 45.0% |
| !!! | CTGTGTTTTTGGCACCTTTG+TGG | - | chr1_1:74608262-74608281 | Msa0043480:CDS | 45.0% |
| CGTGAAAAACAGGACTCTCA+GGG | + | chr1_1:74608362-74608381 | None:intergenic | 45.0% | |
| !! | CCTGAGAGTCCTGTTTTTCA+CGG | - | chr1_1:74608360-74608379 | Msa0043480:CDS | 45.0% |
| CGGTAGAAGAATTCCCAGTA+AGG | - | chr1_1:74608380-74608399 | Msa0043480:CDS | 45.0% | |
| GAAGTTGAAGAGTGGTATGC+AGG | + | chr1_1:74609158-74609177 | None:intergenic | 45.0% | |
| TATGATGATCCTAGCTCGGT+CGG | - | chr1_1:74609229-74609248 | Msa0043480:CDS | 45.0% | |
| TAGCATCCAAATGTTACCCG+AGG | - | chr1_1:74609264-74609283 | Msa0043480:CDS | 45.0% | |
| TCCCTCAACGAATGGAGAAA+AGG | - | chr1_1:74609289-74609308 | Msa0043480:CDS | 45.0% | |
| ! | CCCTTTTCTCCATTCGTTGA+GGG | + | chr1_1:74609293-74609312 | None:intergenic | 45.0% |
| CCCTCAACGAATGGAGAAAA+GGG | - | chr1_1:74609290-74609309 | Msa0043480:CDS | 45.0% | |
| ! | ACCCTTTTCTCCATTCGTTG+AGG | + | chr1_1:74609294-74609313 | None:intergenic | 45.0% |
| AATGGAGAAAAGGGTCCCAA+TGG | - | chr1_1:74609299-74609318 | Msa0043480:CDS | 45.0% | |
| AGGGTCCCAATGGTTTGAAA+TGG | - | chr1_1:74609309-74609328 | Msa0043480:CDS | 45.0% | |
| ! | ATGGACAGAGAACTTGCTCT+AGG | - | chr1_1:74609328-74609347 | Msa0043480:CDS | 45.0% |
| TGCAGTTTGAACACTACGAC+AGG | - | chr1_1:74609680-74609699 | Msa0043480:CDS | 45.0% | |
| ! | ACATTTGTCACCGCCGATTG+CGG | - | chr1_1:74608074-74608093 | Msa0043480:CDS | 50.0% |
| ! | TCTTGTTTCACCGCAATCGG+CGG | + | chr1_1:74608087-74608106 | None:intergenic | 50.0% |
| GCGGTGAAACAAGAACGTGT+AGG | - | chr1_1:74608093-74608112 | Msa0043480:CDS | 50.0% | |
| !!! | GACAAGGGGTGCTGTGTTTT+TGG | - | chr1_1:74608251-74608270 | Msa0043480:CDS | 50.0% |
| CCGTGAAAAACAGGACTCTC+AGG | + | chr1_1:74608363-74608382 | None:intergenic | 50.0% | |
| GGGAAACCTCGGGTAACATT+TGG | + | chr1_1:74609273-74609292 | None:intergenic | 50.0% | |
| CATTCGTTGAGGGAAACCTC+GGG | + | chr1_1:74609283-74609302 | None:intergenic | 50.0% | |
| CCATTCGTTGAGGGAAACCT+CGG | + | chr1_1:74609284-74609303 | None:intergenic | 50.0% | |
| !! | GGAGTTTGACTTGGGTTGAC+TGG | - | chr1_1:74609473-74609492 | Msa0043480:CDS | 50.0% |
| !! | TGACTTGGGTTGACTGGTCA+AGG | - | chr1_1:74609479-74609498 | Msa0043480:CDS | 50.0% |
| !! | GACTTGGGTTGACTGGTCAA+GGG | - | chr1_1:74609480-74609499 | Msa0043480:CDS | 50.0% |
| !! | ACTTGGGTTGACTGGTCAAG+GGG | - | chr1_1:74609481-74609500 | Msa0043480:CDS | 50.0% |
| GCTCTTGAAGATTGCGCCTA+AGG | - | chr1_1:74609654-74609673 | Msa0043480:CDS | 50.0% | |
| ! | ACATTTGTCACCGCCGATTG+CGG | - | chr1_1:74608074-74608093 | Msa0043480:CDS | 50.0% |
| ! | TCTTGTTTCACCGCAATCGG+CGG | + | chr1_1:74608087-74608106 | None:intergenic | 50.0% |
| GCGGTGAAACAAGAACGTGT+AGG | - | chr1_1:74608093-74608112 | Msa0043480:CDS | 50.0% | |
| !!! | GACAAGGGGTGCTGTGTTTT+TGG | - | chr1_1:74608251-74608270 | Msa0043480:CDS | 50.0% |
| CCGTGAAAAACAGGACTCTC+AGG | + | chr1_1:74608363-74608382 | None:intergenic | 50.0% | |
| GGGAAACCTCGGGTAACATT+TGG | + | chr1_1:74609273-74609292 | None:intergenic | 50.0% | |
| CATTCGTTGAGGGAAACCTC+GGG | + | chr1_1:74609283-74609302 | None:intergenic | 50.0% | |
| CCATTCGTTGAGGGAAACCT+CGG | + | chr1_1:74609284-74609303 | None:intergenic | 50.0% | |
| !! | GGAGTTTGACTTGGGTTGAC+TGG | - | chr1_1:74609473-74609492 | Msa0043480:CDS | 50.0% |
| !! | TGACTTGGGTTGACTGGTCA+AGG | - | chr1_1:74609479-74609498 | Msa0043480:CDS | 50.0% |
| !! | GACTTGGGTTGACTGGTCAA+GGG | - | chr1_1:74609480-74609499 | Msa0043480:CDS | 50.0% |
| !! | ACTTGGGTTGACTGGTCAAG+GGG | - | chr1_1:74609481-74609500 | Msa0043480:CDS | 50.0% |
| GCTCTTGAAGATTGCGCCTA+AGG | - | chr1_1:74609654-74609673 | Msa0043480:CDS | 50.0% | |
| CCGAGGTTTCCCTCAACGAA+TGG | - | chr1_1:74609281-74609300 | Msa0043480:CDS | 55.0% | |
| CCGAGGTTTCCCTCAACGAA+TGG | - | chr1_1:74609281-74609300 | Msa0043480:CDS | 55.0% | |
| ! | TGGGTTGACTGGTCAAGGGG+TGG | - | chr1_1:74609484-74609503 | Msa0043480:CDS | 60.0% |
| ! | TGGGTTGACTGGTCAAGGGG+TGG | - | chr1_1:74609484-74609503 | Msa0043480:CDS | 60.0% |
| GATCCTAGCTCGGTCGGTCG+TGG | - | chr1_1:74609235-74609254 | Msa0043480:CDS | 65.0% | |
| GATCCTAGCTCGGTCGGTCG+TGG | - | chr1_1:74609235-74609254 | Msa0043480:CDS | 65.0% | |
| CGACCACGACCGACCGAGCT+AGG | + | chr1_1:74609241-74609260 | None:intergenic | 70.0% | |
| CGACCACGACCGACCGAGCT+AGG | + | chr1_1:74609241-74609260 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 74607852 | 74609744 | 74607852 | ID=Msa0043480;Name=Msa0043480 |
| chr1_1 | mRNA | 74607852 | 74609744 | 74607852 | ID=Msa0043480-mRNA-1;Parent=Msa0043480;Name=Msa0043480-mRNA-1;_AED=0.05;_eAED=0.05;_QI=7|1|0.5|1|1|1|2|0|411 |
| chr1_1 | exon | 74607852 | 74608544 | 74607852 | ID=Msa0043480-mRNA-1:exon:25167;Parent=Msa0043480-mRNA-1 |
| chr1_1 | exon | 74609195 | 74609744 | 74609195 | ID=Msa0043480-mRNA-1:exon:25166;Parent=Msa0043480-mRNA-1 |
| chr1_1 | five_prime_UTR | 74609738 | 74609744 | 74609738 | ID=Msa0043480-mRNA-1:five_prime_utr;Parent=Msa0043480-mRNA-1 |
| chr1_1 | CDS | 74609195 | 74609737 | 74609195 | ID=Msa0043480-mRNA-1:cds;Parent=Msa0043480-mRNA-1 |
| chr1_1 | CDS | 74607852 | 74608544 | 74607852 | ID=Msa0043480-mRNA-1:cds;Parent=Msa0043480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
