Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0043580 | XP_003592643.2 | 94.559 | 533 | 26 | 1 | 1 | 533 | 1 | 530 | 0.0 | 1033 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0043580 | sp|Q09758|GUP1_SCHPO | 34.073 | 496 | 300 | 9 | 51 | 532 | 95 | 577 | 5.75e-93 | 298 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043580 | Msa0138300 | 0.899368 | 2.123067e-77 | -8.615850e-47 |
| Msa0043580 | Msa0287870 | 0.800735 | 1.253628e-48 | -8.615850e-47 |
| Msa0043580 | Msa0321650 | 0.812524 | 4.060662e-51 | -8.615850e-47 |
| Msa0043580 | Msa0828500 | 0.804877 | 1.748989e-49 | -8.615850e-47 |
| Msa0043580 | Msa1102220 | 0.809001 | 2.347817e-50 | -8.615850e-47 |
| Msa0043580 | Msa1190920 | 0.808909 | 2.456635e-50 | -8.615850e-47 |
| Msa0043580 | Msa1458680 | 0.801075 | 1.068345e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0043580 | MtrunA17_Chr1g0209681 | 94.559 | 533 | 26 | 1 | 1 | 533 | 1 | 530 | 0.0 | 1033 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0043580 | AT1G57600.1 | 67.300 | 526 | 172 | 0 | 5 | 530 | 2 | 527 | 0.0 | 779 |
| Msa0043580 | AT1G57600.2 | 67.300 | 526 | 172 | 0 | 5 | 530 | 2 | 527 | 0.0 | 779 |
| Msa0043580 | AT1G57600.3 | 67.300 | 526 | 172 | 0 | 5 | 530 | 2 | 527 | 0.0 | 779 |
| Msa0043580 | AT1G57600.4 | 71.654 | 381 | 108 | 0 | 150 | 530 | 1 | 381 | 0.0 | 606 |
Find 129 sgRNAs with CRISPR-Local
Find 427 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTACTTTCCACTGATAATT+TGG | 0.137054 | 1_1:+74829741 | Msa0043580:CDS |
| GATGCGTTGCACATCAAATT+TGG | 0.145675 | 1_1:+74834374 | Msa0043580:three_prime_UTR |
| ATCAGCCGCAAAAGCATTTA+AGG | 0.184863 | 1_1:+74833505 | Msa0043580:CDS |
| TGGCAATTATTAATACATTT+TGG | 0.194876 | 1_1:-74833083 | None:intergenic |
| CCTCACGAGCCATTTGTTAA+AGG | 0.212104 | 1_1:-74833141 | None:intergenic |
| AATTAGGCTGAAAGCTCTTT+TGG | 0.234805 | 1_1:+74833616 | Msa0043580:intron |
| TTTAAAATGGATCAAGATAA+TGG | 0.242636 | 1_1:-74834344 | None:intergenic |
| TGTCGTATACCTTTGTTATT+TGG | 0.247307 | 1_1:+74831349 | Msa0043580:CDS |
| CACATGCTATCAAGCTTTAC+AGG | 0.247959 | 1_1:+74831127 | Msa0043580:CDS |
| CGCATCGGCAATCTTTAAAA+TGG | 0.251251 | 1_1:-74834357 | None:intergenic |
| CGTTGTCATATTTGCAAATC+AGG | 0.258934 | 1_1:+74831101 | Msa0043580:CDS |
| AAAGAACTCTTTCTGCTTCC+AGG | 0.261759 | 1_1:-74828341 | None:intergenic |
| ACTACAATGCCTTTGCTAAT+AGG | 0.269390 | 1_1:+74832510 | Msa0043580:CDS |
| GCCACAACTTGGAAGGCTTT+TGG | 0.272160 | 1_1:+74833102 | Msa0043580:CDS |
| CCTGTTCTTACACTTGTCTT+TGG | 0.273288 | 1_1:+74828731 | Msa0043580:CDS |
| GTTAGAAATGTGATATTCTA+TGG | 0.273414 | 1_1:+74832434 | Msa0043580:CDS |
| GGATATTCATTCTCAATGTT+TGG | 0.278766 | 1_1:+74829806 | Msa0043580:CDS |
| GTCATGCATTTATCCGGTTC+AGG | 0.298711 | 1_1:-74834239 | None:intergenic |
| GCCAAAGATAGAGGAGAAAA+TGG | 0.319156 | 1_1:-74834689 | None:intergenic |
| GACGTGTTCATCATTGGATA+TGG | 0.322150 | 1_1:+74832663 | Msa0043580:CDS |
| ACAATTACCGCGGCAGCTTT+AGG | 0.332237 | 1_1:+74829933 | Msa0043580:CDS |
| CTGATACTTAACAGTTTGTT+TGG | 0.332551 | 1_1:+74834290 | Msa0043580:three_prime_UTR |
| GATATTCATTCTCAATGTTT+GGG | 0.348229 | 1_1:+74829807 | Msa0043580:CDS |
| CGTGAACTCAGTGCTGTTGC+TGG | 0.351376 | 1_1:+74833652 | Msa0043580:CDS |
| AATCATACATTGAGGTGATT+AGG | 0.358788 | 1_1:-74828591 | None:intergenic |
| TTGGACCAAGCGGTATTAAC+TGG | 0.361852 | 1_1:+74833928 | Msa0043580:CDS |
| GGTATGTGTACATTCCTCTT+GGG | 0.362421 | 1_1:+74833249 | Msa0043580:intron |
| TTCACAGGGCTGCCTGTACT+TGG | 0.364315 | 1_1:+74834050 | Msa0043580:intron |
| GCTTTGGATTGGATTATCAT+TGG | 0.370496 | 1_1:+74830354 | Msa0043580:CDS |
| ATGCGTTGCACATCAAATTT+GGG | 0.390739 | 1_1:+74834375 | Msa0043580:three_prime_UTR |
| TATGCACCGCTTTATATTGC+CGG | 0.391803 | 1_1:+74831374 | Msa0043580:CDS |
| AAAGCGTTGAAGCTCACTAT+TGG | 0.394223 | 1_1:-74831398 | None:intergenic |
| ACTTAACAGTTTGTTTGGCT+TGG | 0.410155 | 1_1:+74834295 | Msa0043580:three_prime_UTR |
| GATCACTACAAACAACTATT+CGG | 0.417667 | 1_1:+74828546 | Msa0043580:intron |
| CCGTCAATAGCGTCGGCAAC+AGG | 0.422697 | 1_1:+74828229 | Msa0043580:five_prime_UTR |
| ACCTTAGGAAGCTTCTTTCA+TGG | 0.422815 | 1_1:+74833438 | Msa0043580:intron |
| CCTATGGACGTGTTCATCAT+TGG | 0.423881 | 1_1:+74832657 | Msa0043580:CDS |
| TGAAGAAAGCCCTCATCAAA+TGG | 0.426260 | 1_1:-74828772 | None:intergenic |
| AGGTATGTGTACATTCCTCT+TGG | 0.428755 | 1_1:+74833248 | Msa0043580:intron |
| AAACAAAGGTCGCCCTGAAC+CGG | 0.429639 | 1_1:+74834226 | Msa0043580:exon |
| GGCATGCTTCCTTTAACAAA+TGG | 0.429696 | 1_1:+74833132 | Msa0043580:CDS |
| TATTAATAATTGCCACAACT+TGG | 0.430954 | 1_1:+74833091 | Msa0043580:CDS |
| ATGAACAAGGACAACTATAA+TGG | 0.432494 | 1_1:+74828304 | Msa0043580:CDS |
| CTCTGTAATCGAATTTATGA+AGG | 0.438020 | 1_1:+74829785 | Msa0043580:CDS |
| TTAAAATGGATCAAGATAAT+GGG | 0.442652 | 1_1:-74834343 | None:intergenic |
| TGGCACATATGTTTCAACTT+TGG | 0.453371 | 1_1:+74829956 | Msa0043580:CDS |
| ACAGGGCTGCCTGTACTTGG+AGG | 0.454380 | 1_1:+74834053 | Msa0043580:intron |
| TTTATTCTTTATCCCTGAGT+TGG | 0.455828 | 1_1:+74833475 | Msa0043580:CDS |
| CAAGTAGTCATGCATTTATC+CGG | 0.457005 | 1_1:-74834245 | None:intergenic |
| ACAAGAAGAAAATTAATAGT+AGG | 0.459154 | 1_1:-74828993 | None:intergenic |
| GTGGAAGCACTTATCTCCTA+TGG | 0.462834 | 1_1:+74832641 | Msa0043580:CDS |
| CCTGTTGCCGACGCTATTGA+CGG | 0.466346 | 1_1:-74828229 | None:intergenic |
| CACTTCTGGCCCATTTGATG+AGG | 0.469438 | 1_1:+74828762 | Msa0043580:CDS |
| ACGTGTTCATCATTGGATAT+GGG | 0.472325 | 1_1:+74832664 | Msa0043580:CDS |
| TGAGAGGAATGTCTGTTGTC+TGG | 0.475739 | 1_1:+74828804 | Msa0043580:CDS |
| GCGCATGATAAGCTTTGGAT+TGG | 0.476068 | 1_1:+74830343 | Msa0043580:CDS |
| TTGTTAACAGGTGGCAAACC+TGG | 0.478504 | 1_1:+74833893 | Msa0043580:intron |
| ACAACTATTCGGTTTACGCC+CGG | 0.479775 | 1_1:+74828557 | Msa0043580:CDS |
| GAATTGTGTTGTAGGTGAAC+GGG | 0.479932 | 1_1:+74833039 | Msa0043580:intron |
| TCCAAAAGCCTTCCAAGTTG+TGG | 0.490739 | 1_1:-74833103 | None:intergenic |
| TGATATTCTATGGTTTCCGT+TGG | 0.493026 | 1_1:+74832444 | Msa0043580:CDS |
| CCTTAGGAAGCTTCTTTCAT+GGG | 0.495974 | 1_1:+74833439 | Msa0043580:intron |
| GGAAGCTTCTTTCATGGGCG+TGG | 0.496623 | 1_1:+74833444 | Msa0043580:intron |
| CCAAAGACAAGTGTAAGAAC+AGG | 0.498674 | 1_1:-74828731 | None:intergenic |
| TCATGCATTTATCCGGTTCA+GGG | 0.508646 | 1_1:-74834238 | None:intergenic |
| CGAGAGAGAAAAGGAGGGAG+AGG | 0.509377 | 1_1:-74828256 | None:intergenic |
| TGATTAGGAATGAGCCATCC+CGG | 0.509630 | 1_1:-74828576 | None:intergenic |
| CAACTATTCGGTTTACGCCC+GGG | 0.510122 | 1_1:+74828558 | Msa0043580:CDS |
| AATAATTGCCACAACTTGGA+AGG | 0.511611 | 1_1:+74833095 | Msa0043580:CDS |
| GAAGAAAGCCCTCATCAAAT+GGG | 0.511777 | 1_1:-74828771 | None:intergenic |
| CACTAATCGCGAGAGAGAAA+AGG | 0.512814 | 1_1:-74828265 | None:intergenic |
| AAGAACTCTTTCTGCTTCCA+GGG | 0.514162 | 1_1:-74828340 | None:intergenic |
| TAAATGCATGACTACTTGTC+TGG | 0.514826 | 1_1:+74834250 | Msa0043580:three_prime_UTR |
| AGTCTACACATCAACAAGTT+CGG | 0.515007 | 1_1:+74831323 | Msa0043580:CDS |
| ACTTCTGGCCCATTTGATGA+GGG | 0.519507 | 1_1:+74828763 | Msa0043580:CDS |
| ACATACCGCGAGAAAGTTGA+AGG | 0.522314 | 1_1:-74828414 | None:intergenic |
| ATAAGCAAGCCTCCAAGTAC+AGG | 0.522498 | 1_1:-74834062 | None:intergenic |
| GTATGTGTACATTCCTCTTG+GGG | 0.525167 | 1_1:+74833250 | Msa0043580:CDS |
| ATGCTCCGTGCAGATATGAT+AGG | 0.529167 | 1_1:-74828847 | None:intergenic |
| TTCTTCAATTTCAATGTGAG+AGG | 0.534160 | 1_1:+74828788 | Msa0043580:CDS |
| GATATTCTATGGTTTCCGTT+GGG | 0.539722 | 1_1:+74832445 | Msa0043580:CDS |
| TGCTTACAAAGAAAAGAAGA+AGG | 0.545743 | 1_1:+74828175 | Msa0043580:five_prime_UTR |
| TTCAGGTCTTAAACTTCATG+TGG | 0.546074 | 1_1:+74832900 | Msa0043580:intron |
| TAGGTTTGCATAATGAAACT+AGG | 0.550020 | 1_1:+74834500 | Msa0043580:three_prime_UTR |
| ATTTATATTGCAGGCAACAA+TGG | 0.550456 | 1_1:+74829900 | Msa0043580:intron |
| GTTTGGCTTGGAGATATCTG+TGG | 0.551371 | 1_1:+74834307 | Msa0043580:three_prime_UTR |
| AGGATGTCTCAGATTCTCAA+TGG | 0.553687 | 1_1:+74828687 | Msa0043580:intron |
| AGCAACCAGTTAATACCGCT+TGG | 0.553971 | 1_1:-74833933 | None:intergenic |
| CCAATGATGAACACGTCCAT+AGG | 0.560827 | 1_1:-74832657 | None:intergenic |
| AAATTTGATGTGCAACGCAT+CGG | 0.566308 | 1_1:-74834372 | None:intergenic |
| TATTTCTGCAGATGTTTGCA+CGG | 0.566514 | 1_1:+74829714 | Msa0043580:intron |
| TTTGGCTTGGAGATATCTGT+GGG | 0.568060 | 1_1:+74834308 | Msa0043580:three_prime_UTR |
| TATCATATCTGCACGGAGCA+TGG | 0.568139 | 1_1:+74828849 | Msa0043580:CDS |
| ATCATTGCCAACTGAAAACA+AGG | 0.569913 | 1_1:+74834437 | Msa0043580:three_prime_UTR |
| GGAATTGTGTTGTAGGTGAA+CGG | 0.574106 | 1_1:+74833038 | Msa0043580:intron |
| CGTGTTCATCATTGGATATG+GGG | 0.576460 | 1_1:+74832665 | Msa0043580:CDS |
| TAATCGCGAGAGAGAAAAGG+AGG | 0.580358 | 1_1:-74828262 | None:intergenic |
| TATTCGGTTTACGCCCGGGA+TGG | 0.580400 | 1_1:+74828562 | Msa0043580:CDS |
| GTTGAAGCTCACTATTGGAC+CGG | 0.582168 | 1_1:-74831393 | None:intergenic |
| CCTTTAACAAATGGCTCGTG+AGG | 0.584960 | 1_1:+74833141 | Msa0043580:CDS |
| GATTAGGAATGAGCCATCCC+GGG | 0.585902 | 1_1:-74828575 | None:intergenic |
| CGCTCCCTTCAACTTTCTCG+CGG | 0.589729 | 1_1:+74828409 | Msa0043580:CDS |
| TTGTAACTCCAAATTATCAG+TGG | 0.599794 | 1_1:-74829749 | None:intergenic |
| TAACAGGTGGCAAACCTGGT+TGG | 0.602168 | 1_1:+74833897 | Msa0043580:intron |
| ATTACCGCGGCAGCTTTAGG+TGG | 0.608263 | 1_1:+74829936 | Msa0043580:CDS |
| TATATTGCAGGCAACAATGG+AGG | 0.611356 | 1_1:+74829903 | Msa0043580:intron |
| AAGCGCCCACCTATTAGCAA+AGG | 0.620476 | 1_1:-74832519 | None:intergenic |
| TCGTCGTCCGTCAATAGCGT+CGG | 0.624092 | 1_1:+74828222 | Msa0043580:five_prime_UTR |
| ATGACTACTTGTCTGGTGGT+AGG | 0.632611 | 1_1:+74834257 | Msa0043580:three_prime_UTR |
| CCATCTGGCATGATTTAGAG+TGG | 0.634701 | 1_1:+74833321 | Msa0043580:CDS |
| GTCCAATAACAAAACCAACC+AGG | 0.634921 | 1_1:-74833911 | None:intergenic |
| AGTTACAATCACTTGCCTCG+TGG | 0.636614 | 1_1:+74833678 | Msa0043580:CDS |
| TATGTGTACATTCCTCTTGG+GGG | 0.644094 | 1_1:+74833251 | Msa0043580:CDS |
| GCTTACAAAGAAAAGAAGAA+GGG | 0.644208 | 1_1:+74828176 | Msa0043580:five_prime_UTR |
| CCACTCTAAATCATGCCAGA+TGG | 0.644443 | 1_1:-74833321 | None:intergenic |
| GTTGTAGGTGAACGGGATTG+AGG | 0.646607 | 1_1:+74833046 | Msa0043580:intron |
| ACAGTAGATTGCGATGAACA+AGG | 0.655075 | 1_1:+74828291 | Msa0043580:exon |
| GCCTACCTATCATATCTGCA+CGG | 0.660232 | 1_1:+74828842 | Msa0043580:CDS |
| AATCGCGAGAGAGAAAAGGA+GGG | 0.665539 | 1_1:-74828261 | None:intergenic |
| GGATAAAACACAATACCCAA+CGG | 0.670518 | 1_1:-74832460 | None:intergenic |
| TGTGCCACCTAAAGCTGCCG+CGG | 0.672567 | 1_1:-74829940 | None:intergenic |
| ACATAGATGAAGCAAAACAA+AGG | 0.675210 | 1_1:+74834212 | Msa0043580:CDS |
| GTGCATACACCAAATAACAA+AGG | 0.675286 | 1_1:-74831358 | None:intergenic |
| GATGTGTCATGAGCTCAACA+AGG | 0.689481 | 1_1:-74832481 | None:intergenic |
| ATGGTAGAAAGAGTTCACCC+TGG | 0.691169 | 1_1:+74828323 | Msa0043580:CDS |
| CATACCGCGAGAAAGTTGAA+GGG | 0.694597 | 1_1:-74828413 | None:intergenic |
| TCCGTGCAGATATGATAGGT+AGG | 0.700523 | 1_1:-74828843 | None:intergenic |
| ATTGGACCGGCAATATAAAG+CGG | 0.704232 | 1_1:-74831380 | None:intergenic |
| ATGCATGACTACTTGTCTGG+TGG | 0.704811 | 1_1:+74834253 | Msa0043580:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTTTTAACATATTTTTTT+AGG | + | chr1_1:74829553-74829572 | Msa0043580:intron | 10.0% |
| !!! | TCTTATGATAATTTTTAATT+AGG | + | chr1_1:74830173-74830192 | Msa0043580:intron | 10.0% |
| !! | GAAACTATATAATTATAAAA+TGG | - | chr1_1:74831243-74831262 | None:intergenic | 10.0% |
| !! | ATAATTATATAGTTTCTATT+CGG | + | chr1_1:74831247-74831266 | Msa0043580:intron | 10.0% |
| !!! | ATAATTTTAATTTCATTATC+AGG | + | chr1_1:74831295-74831314 | Msa0043580:intron | 10.0% |
| !! | AAGATATTATTTGATTAAAT+TGG | + | chr1_1:74831575-74831594 | Msa0043580:intron | 10.0% |
| !! | AGAATTATAATAATCATATA+TGG | - | chr1_1:74833732-74833751 | None:intergenic | 10.0% |
| !! | AAAGTAAATCTATTAAAAAT+AGG | + | chr1_1:74834476-74834495 | Msa0043580:three_prime_UTR | 10.0% |
| !! | AAGTAAATCTATTAAAAATA+GGG | + | chr1_1:74834477-74834496 | Msa0043580:three_prime_UTR | 10.0% |
| !! | ATAAAATACTTACAAAGAAA+TGG | - | chr1_1:74828642-74828661 | None:intergenic | 15.0% |
| !!! | TATTAATTTTCTTCTTGTTA+AGG | + | chr1_1:74828998-74829017 | Msa0043580:CDS | 15.0% |
| !! | TGTAGTAAACTTAATTATAT+AGG | + | chr1_1:74829371-74829390 | Msa0043580:intron | 15.0% |
| !!! | AAATATACTTTGAATAGTTT+TGG | + | chr1_1:74829437-74829456 | Msa0043580:intron | 15.0% |
| !!! | AATATACTTTGAATAGTTTT+GGG | + | chr1_1:74829438-74829457 | Msa0043580:intron | 15.0% |
| !!! | TGTTTGTATTTACAATTTTA+TGG | + | chr1_1:74829845-74829864 | Msa0043580:intron | 15.0% |
| !!! | ATTTTTAATTAGGATACTTA+TGG | + | chr1_1:74830183-74830202 | Msa0043580:intron | 15.0% |
| !!! | TTTTTAATTAGGATACTTAT+GGG | + | chr1_1:74830184-74830203 | Msa0043580:intron | 15.0% |
| !!! | ATATTTAAATAATTTTGCCT+GGG | + | chr1_1:74830752-74830771 | Msa0043580:intron | 15.0% |
| !!! | TTTTAGCTTAAAAATAAACA+TGG | - | chr1_1:74830885-74830904 | None:intergenic | 15.0% |
| !! | ATGAAATTAAAATTATGTAC+TGG | - | chr1_1:74831291-74831310 | None:intergenic | 15.0% |
| !! | ATATTATTTGATTAAATTGG+AGG | + | chr1_1:74831578-74831597 | Msa0043580:intron | 15.0% |
| !!! | TTTTTGTTTTTATGAAATAG+CGG | - | chr1_1:74831764-74831783 | None:intergenic | 15.0% |
| !! | AAACAAAAACAACAAAAATA+AGG | + | chr1_1:74831775-74831794 | Msa0043580:intron | 15.0% |
| !! | TTGTTAAACAAAAAAATAAC+AGG | + | chr1_1:74831950-74831969 | Msa0043580:intron | 15.0% |
| !! | AAAAAATTGAATATAACATG+TGG | - | chr1_1:74832562-74832581 | None:intergenic | 15.0% |
| !!! | TTTACTCTAATTTTATTGTA+TGG | + | chr1_1:74832579-74832598 | Msa0043580:intron | 15.0% |
| !!! | TCAAATTTAAGTTATCATTT+GGG | - | chr1_1:74833214-74833233 | None:intergenic | 15.0% |
| !! | AAATGATAACTTAAATTTGA+CGG | + | chr1_1:74833214-74833233 | Msa0043580:intron | 15.0% |
| !!! | AGTTACCATTATTAATTTTT+TGG | + | chr1_1:74833778-74833797 | Msa0043580:intron | 15.0% |
| !!! | TTAAGTTTTAATTCTTTTTC+TGG | + | chr1_1:74834595-74834614 | Msa0043580:three_prime_UTR | 15.0% |
| !!! | TTTTTTTTATTTATCGTCGT+CGG | + | chr1_1:74828518-74828537 | Msa0043580:intron | 20.0% |
| !! | ACAAGAAGAAAATTAATAGT+AGG | - | chr1_1:74828996-74829015 | None:intergenic | 20.0% |
| !!! | TTAGTTACAATATTTCTAGT+TGG | + | chr1_1:74829048-74829067 | Msa0043580:intron | 20.0% |
| !! | GATATAGAAATCTAGTTAAA+AGG | + | chr1_1:74829162-74829181 | Msa0043580:intron | 20.0% |
| !!! | ATTTGTGTATTTTTGTTTCT+AGG | + | chr1_1:74829276-74829295 | Msa0043580:intron | 20.0% |
| !! | GTAAACTTAATTATATAGGA+AGG | + | chr1_1:74829375-74829394 | Msa0043580:intron | 20.0% |
| !! | TCAAAGTATATTTCTTTAGT+AGG | - | chr1_1:74829430-74829449 | None:intergenic | 20.0% |
| !!! | ATATACTTTGAATAGTTTTG+GGG | + | chr1_1:74829439-74829458 | Msa0043580:intron | 20.0% |
| !!! | TATTTTTTTAGGAACATGAA+TGG | + | chr1_1:74829564-74829583 | Msa0043580:intron | 20.0% |
| !!! | TTCCTAAATAGATATTGTTT+TGG | + | chr1_1:74829622-74829641 | Msa0043580:intron | 20.0% |
| !!! | AATATCATTTTAGTCTTACA+TGG | - | chr1_1:74829698-74829717 | None:intergenic | 20.0% |
| !!! | TGTATTTACAATTTTATGGT+AGG | + | chr1_1:74829849-74829868 | Msa0043580:intron | 20.0% |
| !! | TATAAATACATAGCTTAAGT+GGG | - | chr1_1:74829887-74829906 | None:intergenic | 20.0% |
| !! | ATATAAATACATAGCTTAAG+TGG | - | chr1_1:74829888-74829907 | None:intergenic | 20.0% |
| !! | AAATATGAACCATAAATACA+TGG | - | chr1_1:74830021-74830040 | None:intergenic | 20.0% |
| !!! | GATATTTAAATAATTTTGCC+TGG | + | chr1_1:74830751-74830770 | Msa0043580:intron | 20.0% |
| !!! | GCTTAAATAGTCATATTTTT+AGG | + | chr1_1:74830931-74830950 | Msa0043580:intron | 20.0% |
| !!! | TACCATTTAAAATAAAGCAT+GGG | + | chr1_1:74831160-74831179 | Msa0043580:intron | 20.0% |
| !! | TTATAAAATGGAAAACTTGA+GGG | - | chr1_1:74831231-74831250 | None:intergenic | 20.0% |
| !! | ATTATAAAATGGAAAACTTG+AGG | - | chr1_1:74831232-74831251 | None:intergenic | 20.0% |
| !!! | TTTTCCGAAATTTAAGTATA+TGG | + | chr1_1:74831552-74831571 | Msa0043580:intron | 20.0% |
| !! | TCTTCCATATACTTAAATTT+CGG | - | chr1_1:74831559-74831578 | None:intergenic | 20.0% |
| !! | TTTCTCTTAAAATGAAATAG+CGG | + | chr1_1:74832106-74832125 | Msa0043580:intron | 20.0% |
| !! | AAAAAAAAAAAAAAACGCTG+TGG | - | chr1_1:74832847-74832866 | None:intergenic | 20.0% |
| !!! | TGGCAATTATTAATACATTT+TGG | - | chr1_1:74833086-74833105 | None:intergenic | 20.0% |
| !!! | GTCAAATTTAAGTTATCATT+TGG | - | chr1_1:74833215-74833234 | None:intergenic | 20.0% |
| !! | AATGATAACTTAAATTTGAC+GGG | + | chr1_1:74833215-74833234 | Msa0043580:intron | 20.0% |
| !! | TTATAATTCTTAGCTATTCT+CGG | + | chr1_1:74833742-74833761 | Msa0043580:intron | 20.0% |
| !! | TCTGTTATGTTAAAAAGTAA+AGG | - | chr1_1:74833994-74834013 | None:intergenic | 20.0% |
| !! | TTAAAATGGATCAAGATAAT+GGG | - | chr1_1:74834346-74834365 | None:intergenic | 20.0% |
| !!! | TTTAAAATGGATCAAGATAA+TGG | - | chr1_1:74834347-74834366 | None:intergenic | 20.0% |
| !! | AAATCTATTAAAAATAGGGT+AGG | + | chr1_1:74834481-74834500 | Msa0043580:three_prime_UTR | 20.0% |
| !!! | AAAATGGTTTTGTATAAGAT+TGG | - | chr1_1:74834676-74834695 | None:intergenic | 20.0% |
| ! | TAAACAGGTTATACTATACA+GGG | - | chr1_1:74828456-74828475 | None:intergenic | 25.0% |
| ! | ATAAACAGGTTATACTATAC+AGG | - | chr1_1:74828457-74828476 | None:intergenic | 25.0% |
| !!! | AGTTTGTTTGTTATGTGTAA+AGG | + | chr1_1:74828667-74828686 | Msa0043580:intron | 25.0% |
| !!! | GGTAAAAGGTATTAATCTAT+GGG | - | chr1_1:74829339-74829358 | None:intergenic | 25.0% |
| !!! | TGGTAAAAGGTATTAATCTA+TGG | - | chr1_1:74829340-74829359 | None:intergenic | 25.0% |
| !! | TTTACTACACAGTTTTACTA+TGG | - | chr1_1:74829360-74829379 | None:intergenic | 25.0% |
| ! | TATTTCTTTAGTAGGATGTA+GGG | - | chr1_1:74829422-74829441 | None:intergenic | 25.0% |
| ! | ATATTTCTTTAGTAGGATGT+AGG | - | chr1_1:74829423-74829442 | None:intergenic | 25.0% |
| ! | GTCCAAAACAATATCTATTT+AGG | - | chr1_1:74829627-74829646 | None:intergenic | 25.0% |
| !!! | TAGATATTGTTTTGGACTTT+TGG | + | chr1_1:74829630-74829649 | Msa0043580:intron | 25.0% |
| ! | GATATTCATTCTCAATGTTT+GGG | + | chr1_1:74829807-74829826 | Msa0043580:CDS | 25.0% |
| ! | AAGCTATGTATTTATATTGC+AGG | + | chr1_1:74829891-74829910 | Msa0043580:intron | 25.0% |
| ! | TGAAATTGTCCATGTATTTA+TGG | + | chr1_1:74830009-74830028 | Msa0043580:intron | 25.0% |
| ! | GTATAACTTAATATGAATGC+TGG | - | chr1_1:74830108-74830127 | None:intergenic | 25.0% |
| ! | GTATATAAGTTTCCATTCTA+CGG | + | chr1_1:74830443-74830462 | Msa0043580:intron | 25.0% |
| !! | TTTTTCTGCATATTTGCTTA+TGG | + | chr1_1:74830840-74830859 | Msa0043580:intron | 25.0% |
| ! | AAATTACTATAGATCACATG+AGG | - | chr1_1:74831039-74831058 | None:intergenic | 25.0% |
| !! | CTACCATTTAAAATAAAGCA+TGG | + | chr1_1:74831159-74831178 | Msa0043580:intron | 25.0% |
| !! | ACCATTTAAAATAAAGCATG+GGG | + | chr1_1:74831161-74831180 | Msa0043580:intron | 25.0% |
| ! | TGAATTTCATTACAGTTGTA+TGG | + | chr1_1:74831473-74831492 | Msa0043580:intron | 25.0% |
| ! | ACAATCATAGTAGTTAATAG+CGG | + | chr1_1:74831677-74831696 | Msa0043580:intron | 25.0% |
| !! | GTTTTATATGAACAAAACAG+AGG | + | chr1_1:74831817-74831836 | Msa0043580:intron | 25.0% |
| ! | AACTAGAACAAAAAAGTAAC+AGG | + | chr1_1:74831910-74831929 | Msa0043580:intron | 25.0% |
| ! | CTCGGTTTAAAAAAAAACAA+GGG | - | chr1_1:74832073-74832092 | None:intergenic | 25.0% |
| ! | AGAAAATACAAAATTGTCCT+CGG | - | chr1_1:74832091-74832110 | None:intergenic | 25.0% |
| !! | CTAACTGAATTACTATTTTG+AGG | - | chr1_1:74832419-74832438 | None:intergenic | 25.0% |
| ! | GTTAGAAATGTGATATTCTA+TGG | + | chr1_1:74832434-74832453 | Msa0043580:CDS | 25.0% |
| ! | TTGTATTATGTATCTGTTTC+AGG | + | chr1_1:74832883-74832902 | Msa0043580:intron | 25.0% |
| !! | TTAATTTGGAATTGTGTTGT+AGG | + | chr1_1:74833031-74833050 | Msa0043580:intron | 25.0% |
| !!! | ATACATTTTGGCATATTTTC+TGG | - | chr1_1:74833074-74833093 | None:intergenic | 25.0% |
| ! | TATTAATAATTGCCACAACT+TGG | + | chr1_1:74833091-74833110 | Msa0043580:CDS | 25.0% |
| !! | TTTAACCATGATTTTCCATT+TGG | + | chr1_1:74833176-74833195 | Msa0043580:intron | 25.0% |
| ! | AAAAACCAAATGGAAAATCA+TGG | - | chr1_1:74833184-74833203 | None:intergenic | 25.0% |
| ! | ATGATAACTTAAATTTGACG+GGG | + | chr1_1:74833216-74833235 | Msa0043580:intron | 25.0% |
| ! | GAAAAAGCTCTTAAATGTAT+GGG | + | chr1_1:74833280-74833299 | Msa0043580:CDS | 25.0% |
| ! | GTACATCTTTACAAATAGAA+TGG | - | chr1_1:74833378-74833397 | None:intergenic | 25.0% |
| ! | TTGTAAAGATGTACATTCTT+TGG | + | chr1_1:74833384-74833403 | Msa0043580:intron | 25.0% |
| !! | TATTACCTTAAATGCTTTTG+CGG | - | chr1_1:74833513-74833532 | None:intergenic | 25.0% |
| ! | GAAATTAGATGAGAAAAACA+AGG | - | chr1_1:74833544-74833563 | None:intergenic | 25.0% |
| ! | TTTCTCATCTAATTTCTCAA+CGG | + | chr1_1:74833548-74833567 | Msa0043580:intron | 25.0% |
| ! | TGGAGTTAAATTTCGAAATT+AGG | + | chr1_1:74833600-74833619 | Msa0043580:intron | 25.0% |
| !! | TTGCTTATGACATTTTATGT+TGG | + | chr1_1:74834077-74834096 | Msa0043580:CDS | 25.0% |
| ! | ATTATTAGAGAACAAATGTG+AGG | - | chr1_1:74834161-74834180 | None:intergenic | 25.0% |
| ! | CTTCTTTTCTTTGTAAGCAA+CGG | - | chr1_1:74828174-74828193 | None:intergenic | 30.0% |
| TGCTTACAAAGAAAAGAAGA+AGG | + | chr1_1:74828175-74828194 | Msa0043580:five_prime_UTR | 30.0% | |
| GCTTACAAAGAAAAGAAGAA+GGG | + | chr1_1:74828176-74828195 | Msa0043580:five_prime_UTR | 30.0% | |
| ATGAACAAGGACAACTATAA+TGG | + | chr1_1:74828304-74828323 | Msa0043580:CDS | 30.0% | |
| ACCTGTTTATGTAGATGATA+TGG | + | chr1_1:74828467-74828486 | Msa0043580:intron | 30.0% | |
| GATCACTACAAACAACTATT+CGG | + | chr1_1:74828546-74828565 | Msa0043580:intron | 30.0% | |
| AATCATACATTGAGGTGATT+AGG | - | chr1_1:74828594-74828613 | None:intergenic | 30.0% | |
| CTTACAAAGAAATGGTGATA+AGG | - | chr1_1:74828634-74828653 | None:intergenic | 30.0% | |
| !!! | CTTTGGAATTTTTACACTTC+TGG | + | chr1_1:74828748-74828767 | Msa0043580:CDS | 30.0% |
| TTCTTCAATTTCAATGTGAG+AGG | + | chr1_1:74828788-74828807 | Msa0043580:CDS | 30.0% | |
| ! | CACAGTTTTACTATGGTAAA+AGG | - | chr1_1:74829353-74829372 | None:intergenic | 30.0% |
| AGAGAGATTTGTATATCCAA+TGG | + | chr1_1:74829485-74829504 | Msa0043580:intron | 30.0% | |
| AGATTTGTATATCCAATGGT+GGG | + | chr1_1:74829489-74829508 | Msa0043580:intron | 30.0% | |
| TATCATAGGTCTCATTCTAT+TGG | + | chr1_1:74829516-74829535 | Msa0043580:intron | 30.0% | |
| AGTACTTTCCACTGATAATT+TGG | + | chr1_1:74829741-74829760 | Msa0043580:CDS | 30.0% | |
| TTGTAACTCCAAATTATCAG+TGG | - | chr1_1:74829752-74829771 | None:intergenic | 30.0% | |
| CTCTGTAATCGAATTTATGA+AGG | + | chr1_1:74829785-74829804 | Msa0043580:CDS | 30.0% | |
| GGATATTCATTCTCAATGTT+TGG | + | chr1_1:74829806-74829825 | Msa0043580:CDS | 30.0% | |
| ATTTATATTGCAGGCAACAA+TGG | + | chr1_1:74829900-74829919 | Msa0043580:intron | 30.0% | |
| ! | AACTAGTTTCAAATCAAGTG+AGG | - | chr1_1:74830150-74830169 | None:intergenic | 30.0% |
| ! | TGGGCTGGAATATTAAAATT+TGG | + | chr1_1:74830203-74830222 | Msa0043580:intron | 30.0% |
| TTTCTAAGCATAGTTGTTTG+TGG | + | chr1_1:74830310-74830329 | Msa0043580:intron | 30.0% | |
| !! | TCAAGATTCTCATTTTGATC+CGG | + | chr1_1:74830382-74830401 | Msa0043580:CDS | 30.0% |
| ! | CTTTTGATATTACCTCAAAG+TGG | + | chr1_1:74830716-74830735 | Msa0043580:intron | 30.0% |
| CTTAACAATTATGTAAGACC+AGG | + | chr1_1:74830783-74830802 | Msa0043580:intron | 30.0% | |
| TAATTAAACTTAAACCAGCC+TGG | - | chr1_1:74830804-74830823 | None:intergenic | 30.0% | |
| !! | AGGCTGGTTTAAGTTTAATT+AGG | + | chr1_1:74830803-74830822 | Msa0043580:intron | 30.0% |
| !!! | ACCCCATGCTTTATTTTAAA+TGG | - | chr1_1:74831165-74831184 | None:intergenic | 30.0% |
| !! | TGTCGTATACCTTTGTTATT+TGG | + | chr1_1:74831349-74831368 | Msa0043580:CDS | 30.0% |
| !!! | TGTGACTGCAAGTTATTTTT+AGG | + | chr1_1:74831434-74831453 | Msa0043580:intron | 30.0% |
| CTTAAATTTCGGAAAATAGC+AGG | - | chr1_1:74831548-74831567 | None:intergenic | 30.0% | |
| TGTAATCAGTCAAAACACTT+TGG | + | chr1_1:74831639-74831658 | Msa0043580:intron | 30.0% | |
| CCTCGGTTTAAAAAAAAACA+AGG | - | chr1_1:74832074-74832093 | None:intergenic | 30.0% | |
| !!! | CCTTGTTTTTTTTTAAACCG+AGG | + | chr1_1:74832071-74832090 | Msa0043580:intron | 30.0% |
| GTATTCATAGTAGTCAATAG+TGG | - | chr1_1:74832242-74832261 | None:intergenic | 30.0% | |
| AAAAGGACTACTTCTGATTA+TGG | - | chr1_1:74832286-74832305 | None:intergenic | 30.0% | |
| CATCAATATAACATAGACTC+AGG | - | chr1_1:74832363-74832382 | None:intergenic | 30.0% | |
| CTGAGTCTATGTTATATTGA+TGG | + | chr1_1:74832361-74832380 | Msa0043580:intron | 30.0% | |
| ! | CTATGTTATATTGATGGTAC+TGG | + | chr1_1:74832367-74832386 | Msa0043580:intron | 30.0% |
| ! | TCTTCATCAATTTTATCCAG+CGG | + | chr1_1:74832615-74832634 | Msa0043580:intron | 30.0% |
| TAAACGTCCATGTATATTCA+TGG | + | chr1_1:74832999-74833018 | Msa0043580:intron | 30.0% | |
| ACTTTCTCCATGAATATACA+TGG | - | chr1_1:74833009-74833028 | None:intergenic | 30.0% | |
| CATGGAGAAAGTCATTAATT+TGG | + | chr1_1:74833017-74833036 | Msa0043580:intron | 30.0% | |
| GGGAAAAACTAAAAACCAAA+TGG | - | chr1_1:74833194-74833213 | None:intergenic | 30.0% | |
| GGAAAAAGCTCTTAAATGTA+TGG | + | chr1_1:74833279-74833298 | Msa0043580:CDS | 30.0% | |
| !! | ATGGGTTATATTCACTTTTG+TGG | + | chr1_1:74833298-74833317 | Msa0043580:CDS | 30.0% |
| GGATTAAACAGACCAATAAA+GGG | - | chr1_1:74833357-74833376 | None:intergenic | 30.0% | |
| TGGATTAAACAGACCAATAA+AGG | - | chr1_1:74833358-74833377 | None:intergenic | 30.0% | |
| TGATTATTCTCATGAACCTT+AGG | + | chr1_1:74833423-74833442 | Msa0043580:intron | 30.0% | |
| TTTATTCTTTATCCCTGAGT+TGG | + | chr1_1:74833475-74833494 | Msa0043580:CDS | 30.0% | |
| !! | CTGATTTTAATACCAACTCA+GGG | - | chr1_1:74833490-74833509 | None:intergenic | 30.0% |
| ! | CATATATGGTTAGCTATCAA+GGG | - | chr1_1:74833718-74833737 | None:intergenic | 30.0% |
| ! | TCATATATGGTTAGCTATCA+AGG | - | chr1_1:74833719-74833738 | None:intergenic | 30.0% |
| CGCAGCCAAAAAATTAATAA+TGG | - | chr1_1:74833786-74833805 | None:intergenic | 30.0% | |
| ! | GCTTTCTTCTTTTCTTCATA+AGG | + | chr1_1:74833953-74833972 | Msa0043580:CDS | 30.0% |
| ! | TCTTCTTTTCTTCATAAGGA+AGG | + | chr1_1:74833957-74833976 | Msa0043580:CDS | 30.0% |
| ATTACGAAATTCCATTTCAC+AGG | + | chr1_1:74834035-74834054 | Msa0043580:intron | 30.0% | |
| TTACGAAATTCCATTTCACA+GGG | + | chr1_1:74834036-74834055 | Msa0043580:intron | 30.0% | |
| ! | TGAATTTTCCATCGTTTGAA+TGG | + | chr1_1:74834126-74834145 | Msa0043580:intron | 30.0% |
| ATAGAAAACCATTCAAACGA+TGG | - | chr1_1:74834137-74834156 | None:intergenic | 30.0% | |
| !!! | TTTGTTTTGCTTCATCTATG+TGG | - | chr1_1:74834213-74834232 | None:intergenic | 30.0% |
| ACATAGATGAAGCAAAACAA+AGG | + | chr1_1:74834212-74834231 | Msa0043580:CDS | 30.0% | |
| ! | CTGATACTTAACAGTTTGTT+TGG | + | chr1_1:74834290-74834309 | Msa0043580:three_prime_UTR | 30.0% |
| !!! | TCATTTTCCTTGTTTTCAGT+TGG | - | chr1_1:74834447-74834466 | None:intergenic | 30.0% |
| TAGGTTTGCATAATGAAACT+AGG | + | chr1_1:74834500-74834519 | Msa0043580:three_prime_UTR | 30.0% | |
| ! | TTTTCTTTGTAAGCAACGGA+CGG | - | chr1_1:74828170-74828189 | None:intergenic | 35.0% |
| GAAAAGAAGAAGGGCAAAAA+AGG | + | chr1_1:74828185-74828204 | Msa0043580:five_prime_UTR | 35.0% | |
| GCCATATCATCTACATAAAC+AGG | - | chr1_1:74828471-74828490 | None:intergenic | 35.0% | |
| GCAGAATCAATCATACATTG+AGG | - | chr1_1:74828602-74828621 | None:intergenic | 35.0% | |
| ! | TCTCAATGGAGAAATTTTCG+AGG | + | chr1_1:74828701-74828720 | Msa0043580:CDS | 35.0% |
| ! | AGTTGGTATGTGTAATGTGT+TGG | + | chr1_1:74829065-74829084 | Msa0043580:intron | 35.0% |
| ! | TTGAAAAACTGTGTTGACCA+TGG | + | chr1_1:74829311-74829330 | Msa0043580:intron | 35.0% |
| GTATTAATCTATGGGATCCA+TGG | - | chr1_1:74829331-74829350 | None:intergenic | 35.0% | |
| GAGATTTGTATATCCAATGG+TGG | + | chr1_1:74829488-74829507 | Msa0043580:intron | 35.0% | |
| GATTTGTATATCCAATGGTG+GGG | + | chr1_1:74829490-74829509 | Msa0043580:intron | 35.0% | |
| ATAGGTCTCATTCTATTGGT+TGG | + | chr1_1:74829520-74829539 | Msa0043580:intron | 35.0% | |
| TGAGGGAAGAGTGATAAATA+TGG | - | chr1_1:74829671-74829690 | None:intergenic | 35.0% | |
| ! | TAGTCTTACATGGTAACTGA+GGG | - | chr1_1:74829688-74829707 | None:intergenic | 35.0% |
| !! | TTAGTCTTACATGGTAACTG+AGG | - | chr1_1:74829689-74829708 | None:intergenic | 35.0% |
| ! | TATTTCTGCAGATGTTTGCA+CGG | + | chr1_1:74829714-74829733 | Msa0043580:intron | 35.0% |
| TGGCACATATGTTTCAACTT+TGG | + | chr1_1:74829956-74829975 | Msa0043580:CDS | 35.0% | |
| AATAGTTCAACCACCAAGAT+GGG | - | chr1_1:74830067-74830086 | None:intergenic | 35.0% | |
| CTTAATATGAATGCTGGTGA+TGG | - | chr1_1:74830102-74830121 | None:intergenic | 35.0% | |
| AAGTGAGGAATGATCAAGTT+TGG | - | chr1_1:74830135-74830154 | None:intergenic | 35.0% | |
| TAATTAGGATACTTATGGGC+TGG | + | chr1_1:74830188-74830207 | Msa0043580:intron | 35.0% | |
| ! | GCTTTGGATTGGATTATCAT+TGG | + | chr1_1:74830354-74830373 | Msa0043580:CDS | 35.0% |
| ! | GTCTCTCTCTTAACTTGATA+TGG | + | chr1_1:74830465-74830484 | Msa0043580:intron | 35.0% |
| ! | CTCTTAACTTGATATGGTTG+TGG | + | chr1_1:74830471-74830490 | Msa0043580:intron | 35.0% |
| ! | TGAGATAGTGCTGAATGAAA+TGG | - | chr1_1:74830630-74830649 | None:intergenic | 35.0% |
| TAAGCCCAGCATTATATTGT+TGG | + | chr1_1:74830657-74830676 | Msa0043580:intron | 35.0% | |
| AAGCCCAGCATTATATTGTT+GGG | + | chr1_1:74830658-74830677 | Msa0043580:intron | 35.0% | |
| ATGGTTTCTATCAGTCATTC+AGG | - | chr1_1:74830866-74830885 | None:intergenic | 35.0% | |
| TTGAAGACAACTTAAGATGC+AGG | - | chr1_1:74830908-74830927 | None:intergenic | 35.0% | |
| CGTTGTCATATTTGCAAATC+AGG | + | chr1_1:74831101-74831120 | Msa0043580:CDS | 35.0% | |
| TATAGTTTCTATTCGGCATG+TGG | + | chr1_1:74831254-74831273 | Msa0043580:intron | 35.0% | |
| AGTCTACACATCAACAAGTT+CGG | + | chr1_1:74831323-74831342 | Msa0043580:CDS | 35.0% | |
| GTGCATACACCAAATAACAA+AGG | - | chr1_1:74831361-74831380 | None:intergenic | 35.0% | |
| TCATTACAGTTGTATGGTTG+TGG | + | chr1_1:74831479-74831498 | Msa0043580:intron | 35.0% | |
| !! | TAGTAGTTAATAGCGGATAG+CGG | + | chr1_1:74831684-74831703 | Msa0043580:intron | 35.0% |
| !!! | AAGTAGTCCTTTTTTGTCCT+GGG | + | chr1_1:74832293-74832312 | Msa0043580:intron | 35.0% |
| TGATATTCTATGGTTTCCGT+TGG | + | chr1_1:74832444-74832463 | Msa0043580:CDS | 35.0% | |
| GATATTCTATGGTTTCCGTT+GGG | + | chr1_1:74832445-74832464 | Msa0043580:CDS | 35.0% | |
| GGATAAAACACAATACCCAA+CGG | - | chr1_1:74832463-74832482 | None:intergenic | 35.0% | |
| ACTACAATGCCTTTGCTAAT+AGG | + | chr1_1:74832510-74832529 | Msa0043580:CDS | 35.0% | |
| ACGTGTTCATCATTGGATAT+GGG | + | chr1_1:74832664-74832683 | Msa0043580:CDS | 35.0% | |
| ! | ATGTATCCGTTAGTGTCATT+AGG | - | chr1_1:74832737-74832756 | None:intergenic | 35.0% |
| AGTATATCACTAGGTAGGTT+TGG | - | chr1_1:74832764-74832783 | None:intergenic | 35.0% | |
| ACCTACCTAGTGATATACTA+AGG | + | chr1_1:74832765-74832784 | Msa0043580:intron | 35.0% | |
| CTAAGCCTTAGTATATCACT+AGG | - | chr1_1:74832773-74832792 | None:intergenic | 35.0% | |
| AGTGATATACTAAGGCTTAG+TGG | + | chr1_1:74832773-74832792 | Msa0043580:intron | 35.0% | |
| AACGCTGTGGTAACATAAAT+TGG | - | chr1_1:74832834-74832853 | None:intergenic | 35.0% | |
| TTCAGGTCTTAAACTTCATG+TGG | + | chr1_1:74832900-74832919 | Msa0043580:intron | 35.0% | |
| ! | GGCTAAAGTTTTTACTGATC+TGG | + | chr1_1:74832921-74832940 | Msa0043580:CDS | 35.0% |
| AATAATTGCCACAACTTGGA+AGG | + | chr1_1:74833095-74833114 | Msa0043580:CDS | 35.0% | |
| !! | TGGAAGGCTTTTGGAAAAAT+TGG | + | chr1_1:74833111-74833130 | Msa0043580:CDS | 35.0% |
| !! | GCTGATTTTAATACCAACTC+AGG | - | chr1_1:74833491-74833510 | None:intergenic | 35.0% |
| ! | AATTAGGCTGAAAGCTCTTT+TGG | + | chr1_1:74833616-74833635 | Msa0043580:intron | 35.0% |
| ! | ATTAGGCTGAAAGCTCTTTT+GGG | + | chr1_1:74833617-74833636 | Msa0043580:intron | 35.0% |
| ! | GCGTGATTTCATATCTGTTT+TGG | + | chr1_1:74833803-74833822 | Msa0043580:intron | 35.0% |
| !!! | AACCTGGTTGGTTTTGTTAT+TGG | + | chr1_1:74833909-74833928 | Msa0043580:CDS | 35.0% |
| ! | GACATTTTATGTTGGAGCAA+AGG | + | chr1_1:74834085-74834104 | Msa0043580:CDS | 35.0% |
| CAAGTAGTCATGCATTTATC+CGG | - | chr1_1:74834248-74834267 | None:intergenic | 35.0% | |
| TAAATGCATGACTACTTGTC+TGG | + | chr1_1:74834250-74834269 | Msa0043580:three_prime_UTR | 35.0% | |
| ! | ACTTAACAGTTTGTTTGGCT+TGG | + | chr1_1:74834295-74834314 | Msa0043580:three_prime_UTR | 35.0% |
| AAATTTGATGTGCAACGCAT+CGG | - | chr1_1:74834375-74834394 | None:intergenic | 35.0% | |
| ATGCGTTGCACATCAAATTT+GGG | + | chr1_1:74834375-74834394 | Msa0043580:three_prime_UTR | 35.0% | |
| ATCATTGCCAACTGAAAACA+AGG | + | chr1_1:74834437-74834456 | Msa0043580:three_prime_UTR | 35.0% | |
| TTTCTAAGCCACGAAAAAGA+GGG | - | chr1_1:74834539-74834558 | None:intergenic | 35.0% | |
| ! | TTTTCTAAGCCACGAAAAAG+AGG | - | chr1_1:74834540-74834559 | None:intergenic | 35.0% |
| !! | CTTTTTCGTGGCTTAGAAAA+TGG | + | chr1_1:74834540-74834559 | Msa0043580:three_prime_UTR | 35.0% |
| ACAGTAGATTGCGATGAACA+AGG | + | chr1_1:74828291-74828310 | Msa0043580:exon | 40.0% | |
| AAGAACTCTTTCTGCTTCCA+GGG | - | chr1_1:74828343-74828362 | None:intergenic | 40.0% | |
| AAAGAACTCTTTCTGCTTCC+AGG | - | chr1_1:74828344-74828363 | None:intergenic | 40.0% | |
| AGGATGTCTCAGATTCTCAA+TGG | + | chr1_1:74828687-74828706 | Msa0043580:intron | 40.0% | |
| CCAAAGACAAGTGTAAGAAC+AGG | - | chr1_1:74828734-74828753 | None:intergenic | 40.0% | |
| CCTGTTCTTACACTTGTCTT+TGG | + | chr1_1:74828731-74828750 | Msa0043580:CDS | 40.0% | |
| GAAGAAAGCCCTCATCAAAT+GGG | - | chr1_1:74828774-74828793 | None:intergenic | 40.0% | |
| TGAAGAAAGCCCTCATCAAA+TGG | - | chr1_1:74828775-74828794 | None:intergenic | 40.0% | |
| !!! | GTTTTGGGGACTGAGAAAAT+AGG | + | chr1_1:74829453-74829472 | Msa0043580:intron | 40.0% |
| ! | TCTCATTCTATTGGTTGGTC+AGG | + | chr1_1:74829525-74829544 | Msa0043580:intron | 40.0% |
| TATATTGCAGGCAACAATGG+AGG | + | chr1_1:74829903-74829922 | Msa0043580:intron | 40.0% | |
| !! | AGGTTTTTGGACAATTACCG+CGG | + | chr1_1:74829923-74829942 | Msa0043580:CDS | 40.0% |
| ! | TAACCTCTTTTTCCCCATCT+TGG | + | chr1_1:74830051-74830070 | Msa0043580:intron | 40.0% |
| ATAGTTCAACCACCAAGATG+GGG | - | chr1_1:74830066-74830085 | None:intergenic | 40.0% | |
| GAATAGTTCAACCACCAAGA+TGG | - | chr1_1:74830068-74830087 | None:intergenic | 40.0% | |
| ! | GTTTTGCGCATGATAAGCTT+TGG | + | chr1_1:74830338-74830357 | Msa0043580:CDS | 40.0% |
| !! | AGATTCTCATTTTGATCCGG+AGG | + | chr1_1:74830385-74830404 | Msa0043580:CDS | 40.0% |
| CCTTAAGACAGTAATACCTC+CGG | - | chr1_1:74830404-74830423 | None:intergenic | 40.0% | |
| TTAAGAGAGAGACCGTAGAA+TGG | - | chr1_1:74830458-74830477 | None:intergenic | 40.0% | |
| AAGCCATGATCATGATCAGA+GGG | - | chr1_1:74830520-74830539 | None:intergenic | 40.0% | |
| !! | ATGATCATGGCTTGCTTACT+GGG | + | chr1_1:74830527-74830546 | Msa0043580:intron | 40.0% |
| AGCCCAGCATTATATTGTTG+GGG | + | chr1_1:74830659-74830678 | Msa0043580:intron | 40.0% | |
| TGCCCCAACAATATAATGCT+GGG | - | chr1_1:74830664-74830683 | None:intergenic | 40.0% | |
| ATGCCCCAACAATATAATGC+TGG | - | chr1_1:74830665-74830684 | None:intergenic | 40.0% | |
| ! | ATTGTTAAGCAAAGTGTCCC+AGG | - | chr1_1:74830772-74830791 | None:intergenic | 40.0% |
| ACAATTATGTAAGACCAGGC+TGG | + | chr1_1:74830787-74830806 | Msa0043580:intron | 40.0% | |
| CACATGCTATCAAGCTTTAC+AGG | + | chr1_1:74831127-74831146 | Msa0043580:CDS | 40.0% | |
| GCTATCAAGCTTTACAGGTT+AGG | + | chr1_1:74831132-74831151 | Msa0043580:intron | 40.0% | |
| TATGCACCGCTTTATATTGC+CGG | + | chr1_1:74831374-74831393 | Msa0043580:CDS | 40.0% | |
| ATTGGACCGGCAATATAAAG+CGG | - | chr1_1:74831383-74831402 | None:intergenic | 40.0% | |
| !! | AAAGCGTTGAAGCTCACTAT+TGG | - | chr1_1:74831401-74831420 | None:intergenic | 40.0% |
| TGGTCCTTGTGAAACCTTTA+GGG | + | chr1_1:74831499-74831518 | Msa0043580:intron | 40.0% | |
| TAACCCCTAAAGGTTTCACA+AGG | - | chr1_1:74831506-74831525 | None:intergenic | 40.0% | |
| AAAATAGCAGGATGAGGATG+AGG | - | chr1_1:74831536-74831555 | None:intergenic | 40.0% | |
| TTTCGGAAAATAGCAGGATG+AGG | - | chr1_1:74831542-74831561 | None:intergenic | 40.0% | |
| ! | TATCCCGCTATAGCATTTTC+GGG | - | chr1_1:74831725-74831744 | None:intergenic | 40.0% |
| ! | CTATCCCGCTATAGCATTTT+CGG | - | chr1_1:74831726-74831745 | None:intergenic | 40.0% |
| TAGAGGAAGATTTACAGCAG+AGG | + | chr1_1:74831996-74832015 | Msa0043580:intron | 40.0% | |
| TAGTCAATAGTGGCCAATAG+CGG | - | chr1_1:74832232-74832251 | None:intergenic | 40.0% | |
| !!! | GAAGTAGTCCTTTTTTGTCC+TGG | + | chr1_1:74832292-74832311 | Msa0043580:intron | 40.0% |
| AGAAACACCCAGGACAAAAA+AGG | - | chr1_1:74832303-74832322 | None:intergenic | 40.0% | |
| ACAATGCCTTTGCTAATAGG+TGG | + | chr1_1:74832513-74832532 | Msa0043580:intron | 40.0% | |
| CAATGCCTTTGCTAATAGGT+GGG | + | chr1_1:74832514-74832533 | Msa0043580:intron | 40.0% | |
| ! | CAATTTTATCCAGCGGTTTG+TGG | + | chr1_1:74832622-74832641 | Msa0043580:intron | 40.0% |
| GACGTGTTCATCATTGGATA+TGG | + | chr1_1:74832663-74832682 | Msa0043580:CDS | 40.0% | |
| CGTGTTCATCATTGGATATG+GGG | + | chr1_1:74832665-74832684 | Msa0043580:CDS | 40.0% | |
| GCCTTAGTATATCACTAGGT+AGG | - | chr1_1:74832769-74832788 | None:intergenic | 40.0% | |
| GATATACTAAGGCTTAGTGG+TGG | + | chr1_1:74832776-74832795 | Msa0043580:intron | 40.0% | |
| GGAATTGTGTTGTAGGTGAA+CGG | + | chr1_1:74833038-74833057 | Msa0043580:intron | 40.0% | |
| GAATTGTGTTGTAGGTGAAC+GGG | + | chr1_1:74833039-74833058 | Msa0043580:intron | 40.0% | |
| GGCATGCTTCCTTTAACAAA+TGG | + | chr1_1:74833132-74833151 | Msa0043580:CDS | 40.0% | |
| ATTTGACGGGGTAGAAATTC+AGG | + | chr1_1:74833228-74833247 | Msa0043580:intron | 40.0% | |
| AGGTATGTGTACATTCCTCT+TGG | + | chr1_1:74833248-74833267 | Msa0043580:intron | 40.0% | |
| GGTATGTGTACATTCCTCTT+GGG | + | chr1_1:74833249-74833268 | Msa0043580:intron | 40.0% | |
| GTATGTGTACATTCCTCTTG+GGG | + | chr1_1:74833250-74833269 | Msa0043580:CDS | 40.0% | |
| TATGTGTACATTCCTCTTGG+GGG | + | chr1_1:74833251-74833270 | Msa0043580:CDS | 40.0% | |
| !! | TATTCACTTTTGTGGCCATC+TGG | + | chr1_1:74833306-74833325 | Msa0043580:CDS | 40.0% |
| ACCTTAGGAAGCTTCTTTCA+TGG | + | chr1_1:74833438-74833457 | Msa0043580:intron | 40.0% | |
| CCTTAGGAAGCTTCTTTCAT+GGG | + | chr1_1:74833439-74833458 | Msa0043580:intron | 40.0% | |
| !! | ATCAGCCGCAAAAGCATTTA+AGG | + | chr1_1:74833505-74833524 | Msa0043580:CDS | 40.0% |
| ! | GTGATTCTAGCTGTCTAACA+TGG | + | chr1_1:74833580-74833599 | Msa0043580:intron | 40.0% |
| ! | TTAGGCTGAAAGCTCTTTTG+GGG | + | chr1_1:74833618-74833637 | Msa0043580:intron | 40.0% |
| ! | GAGCTGTGACTTTTGTTAAC+AGG | + | chr1_1:74833881-74833900 | Msa0043580:intron | 40.0% |
| ! | CTGTGACTTTTGTTAACAGG+TGG | + | chr1_1:74833884-74833903 | Msa0043580:intron | 40.0% |
| GTCCAATAACAAAACCAACC+AGG | - | chr1_1:74833914-74833933 | None:intergenic | 40.0% | |
| !!! | GGTTTTGTTATTGGACCAAG+CGG | + | chr1_1:74833918-74833937 | Msa0043580:CDS | 40.0% |
| AACATAAGCTGCAGATACAC+AGG | - | chr1_1:74834190-74834209 | None:intergenic | 40.0% | |
| TCATGCATTTATCCGGTTCA+GGG | - | chr1_1:74834241-74834260 | None:intergenic | 40.0% | |
| !! | TTTGGCTTGGAGATATCTGT+GGG | + | chr1_1:74834308-74834327 | Msa0043580:three_prime_UTR | 40.0% |
| ! | CGCATCGGCAATCTTTAAAA+TGG | - | chr1_1:74834360-74834379 | None:intergenic | 40.0% |
| GATGCGTTGCACATCAAATT+TGG | + | chr1_1:74834374-74834393 | Msa0043580:three_prime_UTR | 40.0% | |
| TTCTAAGCCACGAAAAAGAG+GGG | - | chr1_1:74834538-74834557 | None:intergenic | 40.0% | |
| AATCGCGAGAGAGAAAAGGA+GGG | - | chr1_1:74828264-74828283 | None:intergenic | 45.0% | |
| TAATCGCGAGAGAGAAAAGG+AGG | - | chr1_1:74828265-74828284 | None:intergenic | 45.0% | |
| CACTAATCGCGAGAGAGAAA+AGG | - | chr1_1:74828268-74828287 | None:intergenic | 45.0% | |
| ATGGTAGAAAGAGTTCACCC+TGG | + | chr1_1:74828323-74828342 | Msa0043580:CDS | 45.0% | |
| CATACCGCGAGAAAGTTGAA+GGG | - | chr1_1:74828416-74828435 | None:intergenic | 45.0% | |
| ACATACCGCGAGAAAGTTGA+AGG | - | chr1_1:74828417-74828436 | None:intergenic | 45.0% | |
| ACAACTATTCGGTTTACGCC+CGG | + | chr1_1:74828557-74828576 | Msa0043580:CDS | 45.0% | |
| TGATTAGGAATGAGCCATCC+CGG | - | chr1_1:74828579-74828598 | None:intergenic | 45.0% | |
| ACTTCTGGCCCATTTGATGA+GGG | + | chr1_1:74828763-74828782 | Msa0043580:CDS | 45.0% | |
| TGAGAGGAATGTCTGTTGTC+TGG | + | chr1_1:74828804-74828823 | Msa0043580:CDS | 45.0% | |
| GCCTACCTATCATATCTGCA+CGG | + | chr1_1:74828842-74828861 | Msa0043580:CDS | 45.0% | |
| TCCGTGCAGATATGATAGGT+AGG | - | chr1_1:74828846-74828865 | None:intergenic | 45.0% | |
| ATGCTCCGTGCAGATATGAT+AGG | - | chr1_1:74828850-74828869 | None:intergenic | 45.0% | |
| TATCATATCTGCACGGAGCA+TGG | + | chr1_1:74828849-74828868 | Msa0043580:CDS | 45.0% | |
| CTATGATACATCCCCACCAT+TGG | - | chr1_1:74829504-74829523 | None:intergenic | 45.0% | |
| ! | CAATGGTGGGGATGTATCAT+AGG | + | chr1_1:74829502-74829521 | Msa0043580:intron | 45.0% |
| ! | CAGGCAACAATGGAGGTTTT+TGG | + | chr1_1:74829910-74829929 | Msa0043580:intron | 45.0% |
| !! | TGAATGCTGGTGATGGATCA+CGG | - | chr1_1:74830095-74830114 | None:intergenic | 45.0% |
| !! | GCGCATGATAAGCTTTGGAT+TGG | + | chr1_1:74830343-74830362 | Msa0043580:CDS | 45.0% |
| !! | CCGGAGGTATTACTGTCTTA+AGG | + | chr1_1:74830401-74830420 | Msa0043580:intron | 45.0% |
| TCTCCCTCTGATCATGATCA+TGG | + | chr1_1:74830514-74830533 | Msa0043580:intron | 45.0% | |
| CAAGCCATGATCATGATCAG+AGG | - | chr1_1:74830521-74830540 | None:intergenic | 45.0% | |
| !! | CATGATCATGGCTTGCTTAC+TGG | + | chr1_1:74830526-74830545 | Msa0043580:intron | 45.0% |
| !! | GACTTCACTTTTCCCTTGGT+TGG | + | chr1_1:74830549-74830568 | Msa0043580:intron | 45.0% |
| !! | TCACTTTTCCCTTGGTTGGA+TGG | + | chr1_1:74830553-74830572 | Msa0043580:intron | 45.0% |
| !! | AATCAAGCAGTGCCACTTTG+AGG | - | chr1_1:74830731-74830750 | None:intergenic | 45.0% |
| GTTGAAGCTCACTATTGGAC+CGG | - | chr1_1:74831396-74831415 | None:intergenic | 45.0% | |
| GTGGTCCTTGTGAAACCTTT+AGG | + | chr1_1:74831498-74831517 | Msa0043580:intron | 45.0% | |
| GGTCCTTGTGAAACCTTTAG+GGG | + | chr1_1:74831500-74831519 | Msa0043580:intron | 45.0% | |
| AGGATGCACTTAACCCCTAA+AGG | - | chr1_1:74831516-74831535 | None:intergenic | 45.0% | |
| ! | ATCCCGCTATAGCATTTTCG+GGG | - | chr1_1:74831724-74831743 | None:intergenic | 45.0% |
| CAGAAACAGAGAGAGCAGAA+TGG | + | chr1_1:74831861-74831880 | Msa0043580:intron | 45.0% | |
| AGAGAGAGCAGAATGGAGTT+TGG | + | chr1_1:74831868-74831887 | Msa0043580:intron | 45.0% | |
| GAGCAAACACGACAAAGTAG+AGG | + | chr1_1:74831979-74831998 | Msa0043580:intron | 45.0% | |
| ACAGAACAGCAGAAAAGCAG+AGG | + | chr1_1:74832031-74832050 | Msa0043580:intron | 45.0% | |
| TATCTCACACCGCAATGCTA+TGG | + | chr1_1:74832166-74832185 | Msa0043580:intron | 45.0% | |
| TAGCAATGCAAGAAACACCC+AGG | - | chr1_1:74832313-74832332 | None:intergenic | 45.0% | |
| GATGTGTCATGAGCTCAACA+AGG | - | chr1_1:74832484-74832503 | None:intergenic | 45.0% | |
| !! | GTGGAAGCACTTATCTCCTA+TGG | + | chr1_1:74832641-74832660 | Msa0043580:CDS | 45.0% |
| CCAATGATGAACACGTCCAT+AGG | - | chr1_1:74832660-74832679 | None:intergenic | 45.0% | |
| CCTATGGACGTGTTCATCAT+TGG | + | chr1_1:74832657-74832676 | Msa0043580:CDS | 45.0% | |
| CCTGAGCCTAATGACACTAA+CGG | + | chr1_1:74832728-74832747 | Msa0043580:intron | 45.0% | |
| ATACTAAGGCTTAGTGGTGG+CGG | + | chr1_1:74832779-74832798 | Msa0043580:intron | 45.0% | |
| !!! | TACTGATCTGGCGCTTTTTC+AGG | + | chr1_1:74832933-74832952 | Msa0043580:CDS | 45.0% |
| !!! | CTTTTTCAGGTTCTGGTCAC+TGG | + | chr1_1:74832946-74832965 | Msa0043580:CDS | 45.0% |
| TCCAAAAGCCTTCCAAGTTG+TGG | - | chr1_1:74833106-74833125 | None:intergenic | 45.0% | |
| ! | CCTCACGAGCCATTTGTTAA+AGG | - | chr1_1:74833144-74833163 | None:intergenic | 45.0% |
| CCTTTAACAAATGGCTCGTG+AGG | + | chr1_1:74833141-74833160 | Msa0043580:CDS | 45.0% | |
| CCACTCTAAATCATGCCAGA+TGG | - | chr1_1:74833324-74833343 | None:intergenic | 45.0% | |
| CCATCTGGCATGATTTAGAG+TGG | + | chr1_1:74833321-74833340 | Msa0043580:CDS | 45.0% | |
| GGTACGTATGCTCCCTTTAT+TGG | + | chr1_1:74833342-74833361 | Msa0043580:intron | 45.0% | |
| CCCATGAAAGAAGCTTCCTA+AGG | - | chr1_1:74833442-74833461 | None:intergenic | 45.0% | |
| AGTTACAATCACTTGCCTCG+TGG | + | chr1_1:74833678-74833697 | Msa0043580:CDS | 45.0% | |
| TTAGCTATCAAGGGCAACCA+AGG | - | chr1_1:74833709-74833728 | None:intergenic | 45.0% | |
| TTGTTAACAGGTGGCAAACC+TGG | + | chr1_1:74833893-74833912 | Msa0043580:intron | 45.0% | |
| TTGGACCAAGCGGTATTAAC+TGG | + | chr1_1:74833928-74833947 | Msa0043580:CDS | 45.0% | |
| AGCAACCAGTTAATACCGCT+TGG | - | chr1_1:74833936-74833955 | None:intergenic | 45.0% | |
| ATAAGCAAGCCTCCAAGTAC+AGG | - | chr1_1:74834065-74834084 | None:intergenic | 45.0% | |
| GTCATGCATTTATCCGGTTC+AGG | - | chr1_1:74834242-74834261 | None:intergenic | 45.0% | |
| ATGCATGACTACTTGTCTGG+TGG | + | chr1_1:74834253-74834272 | Msa0043580:three_prime_UTR | 45.0% | |
| ATGACTACTTGTCTGGTGGT+AGG | + | chr1_1:74834257-74834276 | Msa0043580:three_prime_UTR | 45.0% | |
| !! | GTTTGGCTTGGAGATATCTG+TGG | + | chr1_1:74834307-74834326 | Msa0043580:three_prime_UTR | 45.0% |
| ACGAAAAAGAGGGGAAAAGG+AGG | - | chr1_1:74834529-74834548 | None:intergenic | 45.0% | |
| !! | TCCTTTTCCCCTCTTTTTCG+TGG | + | chr1_1:74834528-74834547 | Msa0043580:three_prime_UTR | 45.0% |
| CAACTATTCGGTTTACGCCC+GGG | + | chr1_1:74828558-74828577 | Msa0043580:CDS | 50.0% | |
| GATTAGGAATGAGCCATCCC+GGG | - | chr1_1:74828578-74828597 | None:intergenic | 50.0% | |
| CACTTCTGGCCCATTTGATG+AGG | + | chr1_1:74828762-74828781 | Msa0043580:CDS | 50.0% | |
| TATCTGCACGGAGCATGGTA+TGG | + | chr1_1:74828854-74828873 | Msa0043580:intron | 50.0% | |
| ACAATTACCGCGGCAGCTTT+AGG | + | chr1_1:74829933-74829952 | Msa0043580:CDS | 50.0% | |
| CCACCAAGATGGGGAAAAAG+AGG | - | chr1_1:74830057-74830076 | None:intergenic | 50.0% | |
| ! | CCTCTTTTTCCCCATCTTGG+TGG | + | chr1_1:74830054-74830073 | Msa0043580:intron | 50.0% |
| !! | CTGGGACTTCACTTTTCCCT+TGG | + | chr1_1:74830545-74830564 | Msa0043580:intron | 50.0% |
| GGCTACTTCCATCCAACCAA+GGG | - | chr1_1:74830564-74830583 | None:intergenic | 50.0% | |
| AGGCTACTTCCATCCAACCA+AGG | - | chr1_1:74830565-74830584 | None:intergenic | 50.0% | |
| ! | CTTCAACGCTTTTGCTTCGC+AGG | + | chr1_1:74831409-74831428 | Msa0043580:CDS | 50.0% |
| !! | CGCTATAGCATTTTCGGGGT+CGG | - | chr1_1:74831720-74831739 | None:intergenic | 50.0% |
| CGACCCCGAAAATGCTATAG+CGG | + | chr1_1:74831718-74831737 | Msa0043580:intron | 50.0% | |
| GACCCCGAAAATGCTATAGC+GGG | + | chr1_1:74831719-74831738 | Msa0043580:intron | 50.0% | |
| AGCATTGCGGTGTGAGATAG+CGG | - | chr1_1:74832165-74832184 | None:intergenic | 50.0% | |
| CGCAACAAGCCATAGCATTG+CGG | - | chr1_1:74832178-74832197 | None:intergenic | 50.0% | |
| AAGCGCCCACCTATTAGCAA+AGG | - | chr1_1:74832522-74832541 | None:intergenic | 50.0% | |
| TAAGTGCTTCCACAAACCGC+TGG | - | chr1_1:74832634-74832653 | None:intergenic | 50.0% | |
| ! | CCGTTAGTGTCATTAGGCTC+AGG | - | chr1_1:74832731-74832750 | None:intergenic | 50.0% |
| !!! | TCTGGCGCTTTTTCAGGTTC+TGG | + | chr1_1:74832939-74832958 | Msa0043580:CDS | 50.0% |
| GTTGTAGGTGAACGGGATTG+AGG | + | chr1_1:74833046-74833065 | Msa0043580:intron | 50.0% | |
| ! | GCCACAACTTGGAAGGCTTT+TGG | + | chr1_1:74833102-74833121 | Msa0043580:CDS | 50.0% |
| ACATTCCTCTTGGGGGATCT+CGG | + | chr1_1:74833258-74833277 | Msa0043580:CDS | 50.0% | |
| ! | TTTTTCCGAGATCCCCCAAG+AGG | - | chr1_1:74833266-74833285 | None:intergenic | 50.0% |
| TAACAGGTGGCAAACCTGGT+TGG | + | chr1_1:74833897-74833916 | Msa0043580:intron | 50.0% | |
| AAACAAAGGTCGCCCTGAAC+CGG | + | chr1_1:74834226-74834245 | Msa0043580:exon | 50.0% | |
| GCCACGAAAAAGAGGGGAAA+AGG | - | chr1_1:74834532-74834551 | None:intergenic | 50.0% | |
| TCGTCGTCCGTCAATAGCGT+CGG | + | chr1_1:74828222-74828241 | Msa0043580:five_prime_UTR | 55.0% | |
| CCTGTTGCCGACGCTATTGA+CGG | - | chr1_1:74828232-74828251 | None:intergenic | 55.0% | |
| CGAGAGAGAAAAGGAGGGAG+AGG | - | chr1_1:74828259-74828278 | None:intergenic | 55.0% | |
| CGCTCCCTTCAACTTTCTCG+CGG | + | chr1_1:74828409-74828428 | Msa0043580:CDS | 55.0% | |
| TATTCGGTTTACGCCCGGGA+TGG | + | chr1_1:74828562-74828581 | Msa0043580:CDS | 55.0% | |
| !! | ATTACCGCGGCAGCTTTAGG+TGG | + | chr1_1:74829936-74829955 | Msa0043580:CDS | 55.0% |
| ATGGAAGTAGCCTCGTCTCG+TGG | + | chr1_1:74830572-74830591 | Msa0043580:intron | 55.0% | |
| GGAAGCTTCTTTCATGGGCG+TGG | + | chr1_1:74833444-74833463 | Msa0043580:intron | 55.0% | |
| ! | CGTGAACTCAGTGCTGTTGC+TGG | + | chr1_1:74833652-74833671 | Msa0043580:CDS | 55.0% |
| ! | CTTGCCTCGTGGTTTGTCCT+TGG | + | chr1_1:74833689-74833708 | Msa0043580:intron | 55.0% |
| GCAACCAAGGACAAACCACG+AGG | - | chr1_1:74833696-74833715 | None:intergenic | 55.0% | |
| GTACAGGCAGCCCTGTGAAA+TGG | - | chr1_1:74834049-74834068 | None:intergenic | 55.0% | |
| TTCACAGGGCTGCCTGTACT+TGG | + | chr1_1:74834050-74834069 | Msa0043580:intron | 55.0% | |
| !! | CCGTCAATAGCGTCGGCAAC+AGG | + | chr1_1:74828229-74828248 | Msa0043580:five_prime_UTR | 60.0% |
| TGTGCCACCTAAAGCTGCCG+CGG | - | chr1_1:74829943-74829962 | None:intergenic | 60.0% | |
| GCTCGTGCGATGGTCGATAC+CGG | - | chr1_1:74830600-74830619 | None:intergenic | 60.0% | |
| !! | TGGCTTGTTGCGTAGCGCTC+TGG | + | chr1_1:74832186-74832205 | Msa0043580:intron | 60.0% |
| ACAGGGCTGCCTGTACTTGG+AGG | + | chr1_1:74834053-74834072 | Msa0043580:intron | 60.0% | |
| CGACCATCGCACGAGCAGAG+TGG | + | chr1_1:74830604-74830623 | Msa0043580:intron | 65.0% | |
| TGGCCACTCTGCTCGTGCGA+TGG | - | chr1_1:74830610-74830629 | None:intergenic | 65.0% | |
| ! | TAGCGGATAGCGGCGCGTAG+CGG | + | chr1_1:74831694-74831713 | Msa0043580:intron | 65.0% |
| GTAGCCTCGTCTCGTGGCGC+CGG | + | chr1_1:74830578-74830597 | Msa0043580:intron | 70.0% | |
| GATACCGGCGCCACGAGACG+AGG | - | chr1_1:74830585-74830604 | None:intergenic | 70.0% | |
| AGTGGCCAATAGCGGCCGCG+CGG | - | chr1_1:74832224-74832243 | None:intergenic | 70.0% | |
| CCAATAGCGGCCGCGCGGTG+CGG | - | chr1_1:74832219-74832238 | None:intergenic | 75.0% | |
| ! | TGGCACCGCACCGCACCGCG+CGG | + | chr1_1:74832206-74832225 | Msa0043580:intron | 80.0% |
| ! | CCGCACCGCGCGGCCGCTAT+TGG | + | chr1_1:74832216-74832235 | Msa0043580:intron | 80.0% |
| ! | AGCGGCCGCGCGGTGCGGTG+CGG | - | chr1_1:74832214-74832233 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 74828161 | 74834701 | 74828161 | ID=Msa0043580;Name=Msa0043580 |
| chr1_1 | mRNA | 74828161 | 74834701 | 74828161 | ID=Msa0043580-mRNA-1;Parent=Msa0043580;Name=Msa0043580-mRNA-1;_AED=0.11;_eAED=0.11;_QI=143|1|1|1|0.66|0.78|19|458|533 |
| chr1_1 | exon | 74828161 | 74828430 | 74828161 | ID=Msa0043580-mRNA-1:exon:25228;Parent=Msa0043580-mRNA-1 |
| chr1_1 | exon | 74828547 | 74828605 | 74828547 | ID=Msa0043580-mRNA-1:exon:25229;Parent=Msa0043580-mRNA-1 |
| chr1_1 | exon | 74828689 | 74828870 | 74828689 | ID=Msa0043580-mRNA-1:exon:25230;Parent=Msa0043580-mRNA-1 |
| chr1_1 | exon | 74828971 | 74829019 | 74828971 | ID=Msa0043580-mRNA-1:exon:25231;Parent=Msa0043580-mRNA-1 |
| chr1_1 | exon | 74829725 | 74829828 | 74829725 | ID=Msa0043580-mRNA-1:exon:25232;Parent=Msa0043580-mRNA-1 |
| chr1_1 | exon | 74829913 | 74829977 | 74829913 | ID=Msa0043580-mRNA-1:exon:25233;Parent=Msa0043580-mRNA-1 |
| chr1_1 | exon | 74830336 | 74830406 | 74830336 | ID=Msa0043580-mRNA-1:exon:25234;Parent=Msa0043580-mRNA-1 |
| chr1_1 | exon | 74831089 | 74831148 | 74831089 | ID=Msa0043580-mRNA-1:exon:25235;Parent=Msa0043580-mRNA-1 |
| chr1_1 | exon | 74831317 | 74831430 | 74831317 | ID=Msa0043580-mRNA-1:exon:25236;Parent=Msa0043580-mRNA-1 |
| chr1_1 | exon | 74832407 | 74832531 | 74832407 | ID=Msa0043580-mRNA-1:exon:25237;Parent=Msa0043580-mRNA-1 |
| chr1_1 | exon | 74832635 | 74832686 | 74832635 | ID=Msa0043580-mRNA-1:exon:25238;Parent=Msa0043580-mRNA-1 |
| chr1_1 | exon | 74832905 | 74832967 | 74832905 | ID=Msa0043580-mRNA-1:exon:25239;Parent=Msa0043580-mRNA-1 |
| chr1_1 | exon | 74833053 | 74833162 | 74833053 | ID=Msa0043580-mRNA-1:exon:25240;Parent=Msa0043580-mRNA-1 |
| chr1_1 | exon | 74833250 | 74833342 | 74833250 | ID=Msa0043580-mRNA-1:exon:25241;Parent=Msa0043580-mRNA-1 |
| chr1_1 | exon | 74833445 | 74833526 | 74833445 | ID=Msa0043580-mRNA-1:exon:25242;Parent=Msa0043580-mRNA-1 |
| chr1_1 | exon | 74833622 | 74833699 | 74833622 | ID=Msa0043580-mRNA-1:exon:25243;Parent=Msa0043580-mRNA-1 |
| chr1_1 | exon | 74833903 | 74833978 | 74833903 | ID=Msa0043580-mRNA-1:exon:25244;Parent=Msa0043580-mRNA-1 |
| chr1_1 | exon | 74834057 | 74834106 | 74834057 | ID=Msa0043580-mRNA-1:exon:25245;Parent=Msa0043580-mRNA-1 |
| chr1_1 | exon | 74834202 | 74834701 | 74834202 | ID=Msa0043580-mRNA-1:exon:25246;Parent=Msa0043580-mRNA-1 |
| chr1_1 | five_prime_UTR | 74828161 | 74828303 | 74828161 | ID=Msa0043580-mRNA-1:five_prime_utr;Parent=Msa0043580-mRNA-1 |
| chr1_1 | CDS | 74828304 | 74828430 | 74828304 | ID=Msa0043580-mRNA-1:cds;Parent=Msa0043580-mRNA-1 |
| chr1_1 | CDS | 74828547 | 74828605 | 74828547 | ID=Msa0043580-mRNA-1:cds;Parent=Msa0043580-mRNA-1 |
| chr1_1 | CDS | 74828689 | 74828870 | 74828689 | ID=Msa0043580-mRNA-1:cds;Parent=Msa0043580-mRNA-1 |
| chr1_1 | CDS | 74828971 | 74829019 | 74828971 | ID=Msa0043580-mRNA-1:cds;Parent=Msa0043580-mRNA-1 |
| chr1_1 | CDS | 74829725 | 74829828 | 74829725 | ID=Msa0043580-mRNA-1:cds;Parent=Msa0043580-mRNA-1 |
| chr1_1 | CDS | 74829913 | 74829977 | 74829913 | ID=Msa0043580-mRNA-1:cds;Parent=Msa0043580-mRNA-1 |
| chr1_1 | CDS | 74830336 | 74830406 | 74830336 | ID=Msa0043580-mRNA-1:cds;Parent=Msa0043580-mRNA-1 |
| chr1_1 | CDS | 74831089 | 74831148 | 74831089 | ID=Msa0043580-mRNA-1:cds;Parent=Msa0043580-mRNA-1 |
| chr1_1 | CDS | 74831317 | 74831430 | 74831317 | ID=Msa0043580-mRNA-1:cds;Parent=Msa0043580-mRNA-1 |
| chr1_1 | CDS | 74832407 | 74832531 | 74832407 | ID=Msa0043580-mRNA-1:cds;Parent=Msa0043580-mRNA-1 |
| chr1_1 | CDS | 74832635 | 74832686 | 74832635 | ID=Msa0043580-mRNA-1:cds;Parent=Msa0043580-mRNA-1 |
| chr1_1 | CDS | 74832905 | 74832967 | 74832905 | ID=Msa0043580-mRNA-1:cds;Parent=Msa0043580-mRNA-1 |
| chr1_1 | CDS | 74833053 | 74833162 | 74833053 | ID=Msa0043580-mRNA-1:cds;Parent=Msa0043580-mRNA-1 |
| chr1_1 | CDS | 74833250 | 74833342 | 74833250 | ID=Msa0043580-mRNA-1:cds;Parent=Msa0043580-mRNA-1 |
| chr1_1 | CDS | 74833445 | 74833526 | 74833445 | ID=Msa0043580-mRNA-1:cds;Parent=Msa0043580-mRNA-1 |
| chr1_1 | CDS | 74833622 | 74833699 | 74833622 | ID=Msa0043580-mRNA-1:cds;Parent=Msa0043580-mRNA-1 |
| chr1_1 | CDS | 74833903 | 74833978 | 74833903 | ID=Msa0043580-mRNA-1:cds;Parent=Msa0043580-mRNA-1 |
| chr1_1 | CDS | 74834057 | 74834106 | 74834057 | ID=Msa0043580-mRNA-1:cds;Parent=Msa0043580-mRNA-1 |
| chr1_1 | CDS | 74834202 | 74834243 | 74834202 | ID=Msa0043580-mRNA-1:cds;Parent=Msa0043580-mRNA-1 |
| chr1_1 | three_prime_UTR | 74834244 | 74834701 | 74834244 | ID=Msa0043580-mRNA-1:three_prime_utr;Parent=Msa0043580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
