AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0043910

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0043910 MtrunA17_Chr1g0209981 97.664 214 5 0 2 215 1 214 2.18e-158 436
Msa0043910 MtrunA17_Chr2g0292061 46.766 201 103 1 15 215 79 275 2.96e-62 195
Msa0043910 MtrunA17_Chr2g0292701 38.308 201 118 1 15 215 64 258 3.12e-50 164
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0043910 AT4G39670.1 66.010 203 68 1 14 215 27 229 1.59e-99 288
Msa0043910 AT2G34690.1 44.828 203 106 2 14 215 9 206 1.34e-58 184

Find 67 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCGGCTATTTGGAGATTT+AGG 0.095751 1_1:-75379664 Msa0043910:three_prime_UTR
CTGTATATACATAATCTATT+TGG 0.187363 1_1:-75379573 Msa0043910:three_prime_UTR
GAAAGAGCAATACTGAAATT+TGG 0.217120 1_1:-75379520 Msa0043910:three_prime_UTR
TCAGTTTCTCAGCGGCTATT+TGG 0.268239 1_1:-75379673 Msa0043910:three_prime_UTR
AGCGGCTATTTGGAGATTTA+GGG 0.286497 1_1:-75379663 Msa0043910:three_prime_UTR
TTATCAATGTATTCTATAAC+TGG 0.304225 1_1:+75379820 None:intergenic
GGATCTTTCCACAAAGGTTC+AGG 0.305144 1_1:-75381895 Msa0043910:CDS
CTTGATTCCCTGAACCTTTG+TGG 0.341847 1_1:+75381887 None:intergenic
TGCCATTGCCGAAGCCTTTG+AGG 0.347970 1_1:-75381916 Msa0043910:CDS
AGGATACGCAATCGCTAAAT+CGG 0.356164 1_1:+75381944 None:intergenic
TCATACACACCCGTATTCAT+AGG 0.367979 1_1:-75382182 Msa0043910:five_prime_UTR
TTTGTAAAGCTCAATGAAAC+AGG 0.368946 1_1:-75380604 Msa0043910:intron
AAGAAAGAAAGAGAGTGAAT+AGG 0.376034 1_1:+75382139 None:intergenic
GAAGTGGCGTCAACAGCTTA+TGG 0.379855 1_1:-75380712 Msa0043910:CDS
CCTTTCTCGAAATATTTCAT+TGG 0.382644 1_1:-75379791 Msa0043910:CDS
ATTTCAGTATTGCTCTTTCA+AGG 0.393384 1_1:+75379524 None:intergenic
AAAACAAACGATGGTTGTAA+TGG 0.401175 1_1:-75381973 Msa0043910:exon
CTCGAAATATTTCATTGGAC+TGG 0.428539 1_1:-75379786 Msa0043910:CDS
TAATCTACGCAGAGTTCGCC+AGG 0.430093 1_1:-75381043 Msa0043910:CDS
GTCAGAACGGCTGTGTATGC+TGG 0.431196 1_1:-75380658 Msa0043910:CDS
AAGAGAGTGAATAGGAAGGA+AGG 0.445346 1_1:+75382147 None:intergenic
CGTGACACAGTGAAAACATC+TGG 0.453856 1_1:-75381078 Msa0043910:CDS
AGGAAGGTTCCCTATGAATA+CGG 0.461002 1_1:+75382172 None:intergenic
AATAGGAAGGAAGGGAAGGA+AGG 0.476701 1_1:+75382156 None:intergenic
AGAGAGTGAATAGGAAGGAA+GGG 0.478751 1_1:+75382148 None:intergenic
CCAATGAAATATTTCGAGAA+AGG 0.487284 1_1:+75379791 None:intergenic
TTTGTTGTAGTCGATCTGTT+CGG 0.498873 1_1:-75379705 Msa0043910:three_prime_UTR
GGAAAGATCCTCAAAGGCTT+CGG 0.500738 1_1:+75381908 None:intergenic
TATGAATACGGGTGTGTATG+AGG 0.504151 1_1:+75382184 None:intergenic
GATTGGTATGCTCAGCTACA+TGG 0.504762 1_1:-75381162 Msa0043910:intron
TTTGTGCACCGTATCACTCA+TGG 0.508447 1_1:-75380684 Msa0043910:CDS
TATATACATAATCTATTTGG+AGG 0.509298 1_1:-75379570 Msa0043910:three_prime_UTR
GATCTTTCCACAAAGGTTCA+GGG 0.519873 1_1:-75381894 Msa0043910:CDS
AGTGAATAGGAAGGAAGGGA+AGG 0.522382 1_1:+75382152 None:intergenic
CTGTGTCACGGGCCACATCA+TGG 0.522770 1_1:+75381091 None:intergenic
TTGTGCACCGTATCACTCAT+GGG 0.532403 1_1:-75380683 Msa0043910:CDS
GAGGCAGTGATGTGCTCCAT+TGG 0.532940 1_1:-75379751 Msa0043910:three_prime_UTR
ATCCTCAAAGGCTTCGGCAA+TGG 0.535128 1_1:+75381914 None:intergenic
TTTCAGTATTGCTCTTTCAA+GGG 0.538267 1_1:+75379525 None:intergenic
AAGAAAGAGAGTGAATAGGA+AGG 0.544514 1_1:+75382143 None:intergenic
CTGACTCCCCATGAGTGATA+CGG 0.553379 1_1:+75380676 None:intergenic
CAGCGGAGAAGAAGATGAGA+AGG 0.559369 1_1:-75379861 Msa0043910:CDS
CATACACACCCGTATTCATA+GGG 0.563694 1_1:-75382181 Msa0043910:five_prime_UTR
GGAAGGTTCCCTATGAATAC+GGG 0.573432 1_1:+75382173 None:intergenic
GCTTCGGCAATGGCAGAAAG+AGG 0.573499 1_1:+75381924 None:intergenic
CTCTAACGAGATCAAGACCC+TGG 0.574080 1_1:+75381025 None:intergenic
CTTTGAGGATCTTTCCACAA+AGG 0.574860 1_1:-75381901 Msa0043910:CDS
ATAAAGAAAATGTCAACCGC+TGG 0.576083 1_1:+75382227 None:intergenic
CTTTGTGGAAAGATCCTCAA+AGG 0.582564 1_1:+75381902 None:intergenic
TCACTCATGGGGAGTCAGAA+CGG 0.583291 1_1:-75380671 Msa0043910:CDS
TGCTCAGCTACATGGACTGG+TGG 0.589627 1_1:-75381154 Msa0043910:intron
GTATGCTCAGCTACATGGAC+TGG 0.590660 1_1:-75381157 Msa0043910:intron
GGAGTCTTACGATGAAATGT+CGG 0.605581 1_1:+75382061 None:intergenic
GCATTGTACTGCTATACCAA+TGG 0.613273 1_1:+75379735 None:intergenic
TGATATTTATCTGAAAGAAG+TGG 0.618563 1_1:-75380728 Msa0043910:CDS
GTCTAAGCGAATATGTTGAG+TGG 0.619668 1_1:+75381854 None:intergenic
TGAAATGGAATACGTTGCCA+AGG 0.620132 1_1:-75381763 Msa0043910:intron
GTATTCTATAACTGGACGTG+AGG 0.634779 1_1:+75379828 None:intergenic
AAGGTTCAGGGAATCAAGAA+CGG 0.645785 1_1:-75381882 Msa0043910:CDS
GGCGTCAACAGCTTATGGAG+AGG 0.646741 1_1:-75380707 Msa0043910:CDS
TAAGCGAATATGTTGAGTGG+AGG 0.653086 1_1:+75381857 None:intergenic
TGTGCACCGTATCACTCATG+GGG 0.681218 1_1:-75380682 Msa0043910:CDS
TTAATTAGTCAGTTTCTCAG+CGG 0.684824 1_1:-75379681 Msa0043910:three_prime_UTR
TGTTATTGCAGAGCAATCAG+CGG 0.688575 1_1:-75379878 Msa0043910:intron
AGATGTAATTGACCATGATG+TGG 0.712076 1_1:-75381103 Msa0043910:CDS
AATCTACGCAGAGTTCGCCA+GGG 0.712951 1_1:-75381042 Msa0043910:CDS
GGACTGGTGAGTTCTAGCAG+AGG 0.732675 1_1:-75379770 Msa0043910:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAATTTTTGATACATTAA+GGG + chr1_1:75381299-75381318 None:intergenic 10.0%
!!! TATAAATTTTTGATACATTA+AGG + chr1_1:75381300-75381319 None:intergenic 10.0%
!! AAAAAAAGAACAAAAAAATT+AGG - chr1_1:75382131-75382150 Msa0043910:five_prime_UTR 10.0%
!!! ATTGAAAAATAATTAGTTTC+TGG + chr1_1:75379658-75379677 None:intergenic 15.0%
!!! TATTAGTTTATCATATTATC+TGG - chr1_1:75380550-75380569 Msa0043910:intron 15.0%
!!! ATTAGTTTATCATATTATCT+GGG - chr1_1:75380551-75380570 Msa0043910:intron 15.0%
!!! TTTGTGATTTCTTTTTATGA+AGG + chr1_1:75379754-75379773 None:intergenic 20.0%
!! ATAATTTGACATTTGATACA+AGG - chr1_1:75380132-75380151 Msa0043910:intron 20.0%
!!! AAAAATATTGTGAGAGTTTT+AGG - chr1_1:75380405-75380424 Msa0043910:intron 20.0%
!!! AAAGTGTTACATGTATAAAT+AGG + chr1_1:75380802-75380821 None:intergenic 20.0%
!!! TTGTTTTGTTTTGTTATGTT+CGG - chr1_1:75381193-75381212 Msa0043910:intron 20.0%
!!! GTCTTATGTTACTAATTTTA+TGG - chr1_1:75381335-75381354 Msa0043910:intron 20.0%
!!! ACTCTATAATGCTTTTATAT+TGG - chr1_1:75381501-75381520 Msa0043910:intron 20.0%
!! AAATAAACAGACTAATGAAA+GGG + chr1_1:75381695-75381714 None:intergenic 20.0%
!! AAAATAAACAGACTAATGAA+AGG + chr1_1:75381696-75381715 None:intergenic 20.0%
!!! ATTATTTCTATGTAAGATGA+AGG + chr1_1:75381855-75381874 None:intergenic 20.0%
!! TTATCAATGTATTCTATAAC+TGG + chr1_1:75381948-75381967 None:intergenic 20.0%
!!! AAATTAGGATTTTGCTAAAA+CGG - chr1_1:75382146-75382165 Msa0043910:five_prime_UTR 20.0%
!! CTGTATATACATAATCTATT+TGG - chr1_1:75382192-75382211 Msa0043910:five_prime_UTR 20.0%
!! TATATACATAATCTATTTGG+AGG - chr1_1:75382195-75382214 Msa0043910:five_prime_UTR 20.0%
!!! AGTGATTTTAAAACAAACGA+TGG - chr1_1:75379783-75379802 Msa0043910:CDS 25.0%
! GTGTAAAACATTACATACAT+TGG + chr1_1:75380314-75380333 None:intergenic 25.0%
! TGATGTGAATATATGATGAT+TGG - chr1_1:75380586-75380605 Msa0043910:intron 25.0%
! TGATATTTATCTGAAAGAAG+TGG - chr1_1:75381037-75381056 Msa0043910:CDS 25.0%
! ACTAATAGAATACACATTTG+AGG - chr1_1:75381404-75381423 Msa0043910:intron 25.0%
! AACAAAGAAAAACCACTATA+CGG + chr1_1:75381548-75381567 None:intergenic 25.0%
! TCACAACACAGATTTATATA+AGG + chr1_1:75381740-75381759 None:intergenic 25.0%
!! TTGATGCTTTTTATTACCAG+CGG - chr1_1:75379522-75379541 Msa0043910:three_prime_UTR 30.0%
AAGAAAGAAAGAGAGTGAAT+AGG + chr1_1:75379629-75379648 None:intergenic 30.0%
CTTTGATGAAACGTCAAAAA+AGG + chr1_1:75379728-75379747 None:intergenic 30.0%
AAAACAAACGATGGTTGTAA+TGG - chr1_1:75379792-75379811 Msa0043910:CDS 30.0%
! TGCTTTTAAATTCGCTGAAA+TGG - chr1_1:75379987-75380006 Msa0043910:intron 30.0%
ATCGTCATTGCTTATCTTAA+TGG - chr1_1:75380034-75380053 Msa0043910:intron 30.0%
CAATGAGTCTATCTAATCAA+AGG - chr1_1:75380190-75380209 Msa0043910:intron 30.0%
TGTCATCATGACAAATATCA+AGG + chr1_1:75380226-75380245 None:intergenic 30.0%
TGATATTTGTCATGATGACA+TGG - chr1_1:75380226-75380245 Msa0043910:intron 30.0%
TTACAAACACTTCACATTGA+AGG - chr1_1:75380261-75380280 Msa0043910:intron 30.0%
! TTTAGGATACTTCATTATGC+TGG - chr1_1:75380422-75380441 Msa0043910:intron 30.0%
!! TTCATTATGCTGGTTGTTTT+TGG - chr1_1:75380432-75380451 Msa0043910:intron 30.0%
!! TTTTGAGAATCCCTTTGTTT+TGG - chr1_1:75380825-75380844 Msa0043910:intron 30.0%
!!! TTTGAGAATCCCTTTGTTTT+GGG - chr1_1:75380826-75380845 Msa0043910:intron 30.0%
TGGTATGAAAGTAAACAACA+TGG + chr1_1:75380886-75380905 None:intergenic 30.0%
GTTTACTTTCATACCAGATT+TGG - chr1_1:75380890-75380909 Msa0043910:intron 30.0%
! GAGTTTAAAGTAACCAAATC+TGG + chr1_1:75380906-75380925 None:intergenic 30.0%
TTAAAGTAACCACATTTGAC+AGG + chr1_1:75380964-75380983 None:intergenic 30.0%
CATTGAGCTTTACAAAAAGT+TGG + chr1_1:75381157-75381176 None:intergenic 30.0%
TTTGTAAAGCTCAATGAAAC+AGG - chr1_1:75381161-75381180 Msa0043910:intron 30.0%
GACAAAAATGACAGTTTACT+TGG + chr1_1:75381244-75381263 None:intergenic 30.0%
TACACATTTGAGGATCAATA+TGG - chr1_1:75381414-75381433 Msa0043910:intron 30.0%
GATGCATTTACATACTATAG+TGG - chr1_1:75381476-75381495 Msa0043910:intron 30.0%
CAGATTTATATAAGGCTTCT+CGG + chr1_1:75381732-75381751 None:intergenic 30.0%
AATCTGTGTTGTGAAACAAA+TGG - chr1_1:75381746-75381765 Msa0043910:intron 30.0%
GATTTGAGTATATAGCAAGT+TGG - chr1_1:75381791-75381810 Msa0043910:CDS 30.0%
TTCTATGTAAGATGAAGGAT+TGG + chr1_1:75381850-75381869 None:intergenic 30.0%
CCAATGAAATATTTCGAGAA+AGG + chr1_1:75381977-75381996 None:intergenic 30.0%
CCTTTCTCGAAATATTTCAT+TGG - chr1_1:75381974-75381993 Msa0043910:exon 30.0%
TTAATTAGTCAGTTTCTCAG+CGG - chr1_1:75382084-75382103 Msa0043910:five_prime_UTR 30.0%
TTTCAGTATTGCTCTTTCAA+GGG + chr1_1:75382243-75382262 None:intergenic 30.0%
ATTTCAGTATTGCTCTTTCA+AGG + chr1_1:75382244-75382263 None:intergenic 30.0%
ATAAAGAAAATGTCAACCGC+TGG + chr1_1:75379541-75379560 None:intergenic 35.0%
AAGAAAGAGAGTGAATAGGA+AGG + chr1_1:75379625-75379644 None:intergenic 35.0%
!! TCTGTTCTTTTTCGTTGTCT+TGG - chr1_1:75379961-75379980 Msa0043910:intron 35.0%
ATGACGATGATGATATACCT+TGG + chr1_1:75380022-75380041 None:intergenic 35.0%
! TCAAAGTGTCATTGCTTCAT+AGG - chr1_1:75380372-75380391 Msa0043910:intron 35.0%
ACTTTATACCCACGTATTTC+TGG - chr1_1:75380469-75380488 Msa0043910:intron 35.0%
TAGATAGACCAGAAATACGT+GGG + chr1_1:75380480-75380499 None:intergenic 35.0%
AGATGTAATTGACCATGATG+TGG - chr1_1:75380662-75380681 Msa0043910:CDS 35.0%
! TCGAACAACTTTTGTCAACT+AGG - chr1_1:75380769-75380788 Msa0043910:intron 35.0%
!!! TTGAGAATCCCTTTGTTTTG+GGG - chr1_1:75380827-75380846 Msa0043910:intron 35.0%
TGACAGGAAAGTAAACAACA+TGG + chr1_1:75380948-75380967 None:intergenic 35.0%
GTTTACTTTCCTGTCAAATG+TGG - chr1_1:75380952-75380971 Msa0043910:intron 35.0%
! ACAAAAAGTTGGTCTCTTGT+TGG + chr1_1:75381146-75381165 None:intergenic 35.0%
TTTGTCTCTAAATGTGTGTG+AGG - chr1_1:75381258-75381277 Msa0043910:intron 35.0%
AGTAACATAAGACACACTTG+AGG + chr1_1:75381328-75381347 None:intergenic 35.0%
GTGTCTTATGTTTGTCAGTT+TGG + chr1_1:75381362-75381381 None:intergenic 35.0%
GAAAAACAGATTCCGTATAG+TGG - chr1_1:75381533-75381552 Msa0043910:intron 35.0%
AGGATGACATCTTACAAGAA+GGG + chr1_1:75381659-75381678 None:intergenic 35.0%
TAGGATGACATCTTACAAGA+AGG + chr1_1:75381660-75381679 None:intergenic 35.0%
CTCGAAATATTTCATTGGAC+TGG - chr1_1:75381979-75381998 Msa0043910:exon 35.0%
! TTTGTTGTAGTCGATCTGTT+CGG - chr1_1:75382060-75382079 Msa0043910:five_prime_UTR 35.0%
TATGAATACGGGTGTGTATG+AGG + chr1_1:75379584-75379603 None:intergenic 40.0%
TCATACACACCCGTATTCAT+AGG - chr1_1:75379583-75379602 Msa0043910:three_prime_UTR 40.0%
CATACACACCCGTATTCATA+GGG - chr1_1:75379584-75379603 Msa0043910:three_prime_UTR 40.0%
AGGAAGGTTCCCTATGAATA+CGG + chr1_1:75379596-75379615 None:intergenic 40.0%
AGAGAGTGAATAGGAAGGAA+GGG + chr1_1:75379620-75379639 None:intergenic 40.0%
AAGAGAGTGAATAGGAAGGA+AGG + chr1_1:75379621-75379640 None:intergenic 40.0%
GGAGTCTTACGATGAAATGT+CGG + chr1_1:75379707-75379726 None:intergenic 40.0%
AGGATACGCAATCGCTAAAT+CGG + chr1_1:75379824-75379843 None:intergenic 40.0%
CTTTGTGGAAAGATCCTCAA+AGG + chr1_1:75379866-75379885 None:intergenic 40.0%
! CTTTGAGGATCTTTCCACAA+AGG - chr1_1:75379864-75379883 Msa0043910:CDS 40.0%
GATCTTTCCACAAAGGTTCA+GGG - chr1_1:75379871-75379890 Msa0043910:intron 40.0%
AAGGTTCAGGGAATCAAGAA+CGG - chr1_1:75379883-75379902 Msa0043910:intron 40.0%
TAAGCGAATATGTTGAGTGG+AGG + chr1_1:75379911-75379930 None:intergenic 40.0%
GTCTAAGCGAATATGTTGAG+TGG + chr1_1:75379914-75379933 None:intergenic 40.0%
TGAAATGGAATACGTTGCCA+AGG - chr1_1:75380002-75380021 Msa0043910:intron 40.0%
! AGTGTCATTGCTTCATAGGT+AGG - chr1_1:75380376-75380395 Msa0043910:intron 40.0%
CTAGATAGACCAGAAATACG+TGG + chr1_1:75380481-75380500 None:intergenic 40.0%
! AGATGTTTTCACTGTGTCAC+GGG + chr1_1:75380688-75380707 None:intergenic 40.0%
! CAGATGTTTTCACTGTGTCA+CGG + chr1_1:75380689-75380708 None:intergenic 40.0%
!!! TGAGAATCCCTTTGTTTTGG+GGG - chr1_1:75380828-75380847 Msa0043910:intron 40.0%
AACCTCAATCCTAACATGTG+AGG - chr1_1:75381621-75381640 Msa0043910:intron 40.0%
TCTTACAAGAAGGGTCATCT+AGG + chr1_1:75381650-75381669 None:intergenic 40.0%
GAAAGGGTTATTCGCATGTT+AGG + chr1_1:75381679-75381698 None:intergenic 40.0%
TGTTATTGCAGAGCAATCAG+CGG - chr1_1:75381887-75381906 Msa0043910:CDS 40.0%
GTATTCTATAACTGGACGTG+AGG + chr1_1:75381940-75381959 None:intergenic 40.0%
GCATTGTACTGCTATACCAA+TGG + chr1_1:75382033-75382052 None:intergenic 40.0%
AGCGGCTATTTGGAGATTTA+GGG - chr1_1:75382102-75382121 Msa0043910:five_prime_UTR 40.0%
GGAAGGTTCCCTATGAATAC+GGG + chr1_1:75379595-75379614 None:intergenic 45.0%
AATAGGAAGGAAGGGAAGGA+AGG + chr1_1:75379612-75379631 None:intergenic 45.0%
AGTGAATAGGAAGGAAGGGA+AGG + chr1_1:75379616-75379635 None:intergenic 45.0%
GGAAAGATCCTCAAAGGCTT+CGG + chr1_1:75379860-75379879 None:intergenic 45.0%
GGATCTTTCCACAAAGGTTC+AGG - chr1_1:75379870-75379889 Msa0043910:CDS 45.0%
CTTGATTCCCTGAACCTTTG+TGG + chr1_1:75379881-75379900 None:intergenic 45.0%
! CTTCACATTGAAGGTGTGTC+CGG - chr1_1:75380270-75380289 Msa0043910:intron 45.0%
! ATTGGTGTCTTGTCAGACAC+CGG + chr1_1:75380296-75380315 None:intergenic 45.0%
GATTGGTATGCTCAGCTACA+TGG - chr1_1:75380603-75380622 Msa0043910:intron 45.0%
CGTGACACAGTGAAAACATC+TGG - chr1_1:75380687-75380706 Msa0043910:CDS 45.0%
!!! GAGAATCCCTTTGTTTTGGG+GGG - chr1_1:75380829-75380848 Msa0043910:intron 45.0%
!!! AGAATCCCTTTGTTTTGGGG+GGG - chr1_1:75380830-75380849 Msa0043910:intron 45.0%
TTTGTGCACCGTATCACTCA+TGG - chr1_1:75381081-75381100 Msa0043910:CDS 45.0%
TTGTGCACCGTATCACTCAT+GGG - chr1_1:75381082-75381101 Msa0043910:CDS 45.0%
! TCCACGAATGTGTCTTTTGC+TGG + chr1_1:75381440-75381459 None:intergenic 45.0%
TGCCTCACATGTTAGGATTG+AGG + chr1_1:75381626-75381645 None:intergenic 45.0%
TCTAGGTTGCCTCACATGTT+AGG + chr1_1:75381633-75381652 None:intergenic 45.0%
ATAAGGCTTCTCGGCTAAGT+TGG + chr1_1:75381723-75381742 None:intergenic 45.0%
TCAGTTTCTCAGCGGCTATT+TGG - chr1_1:75382092-75382111 Msa0043910:five_prime_UTR 45.0%
CAGCGGCTATTTGGAGATTT+AGG - chr1_1:75382101-75382120 Msa0043910:five_prime_UTR 45.0%
ATCCTCAAAGGCTTCGGCAA+TGG + chr1_1:75379854-75379873 None:intergenic 50.0%
GTATGCTCAGCTACATGGAC+TGG - chr1_1:75380608-75380627 Msa0043910:CDS 50.0%
TAATCTACGCAGAGTTCGCC+AGG - chr1_1:75380722-75380741 Msa0043910:CDS 50.0%
AATCTACGCAGAGTTCGCCA+GGG - chr1_1:75380723-75380742 Msa0043910:CDS 50.0%
CTCTAACGAGATCAAGACCC+TGG + chr1_1:75380743-75380762 None:intergenic 50.0%
GAAGTGGCGTCAACAGCTTA+TGG - chr1_1:75381053-75381072 Msa0043910:CDS 50.0%
TGTGCACCGTATCACTCATG+GGG - chr1_1:75381083-75381102 Msa0043910:CDS 50.0%
CTGACTCCCCATGAGTGATA+CGG + chr1_1:75381092-75381111 None:intergenic 50.0%
TCACTCATGGGGAGTCAGAA+CGG - chr1_1:75381094-75381113 Msa0043910:CDS 50.0%
GCCAGCAAAAGACACATTCG+TGG - chr1_1:75381436-75381455 Msa0043910:intron 50.0%
CAGCGGAGAAGAAGATGAGA+AGG - chr1_1:75381904-75381923 Msa0043910:CDS 50.0%
GCTTCGGCAATGGCAGAAAG+AGG + chr1_1:75379844-75379863 None:intergenic 55.0%
TGCCATTGCCGAAGCCTTTG+AGG - chr1_1:75379849-75379868 Msa0043910:CDS 55.0%
! ACATTGAAGGTGTGTCCGGC+CGG - chr1_1:75380274-75380293 Msa0043910:intron 55.0%
!! TGCTCAGCTACATGGACTGG+TGG - chr1_1:75380611-75380630 Msa0043910:CDS 55.0%
CCACACCCCCCCAAAACAAA+GGG + chr1_1:75380838-75380857 None:intergenic 55.0%
!!! CCTTTGTTTTGGGGGGGTGT+GGG - chr1_1:75380836-75380855 Msa0043910:intron 55.0%
GGCGTCAACAGCTTATGGAG+AGG - chr1_1:75381058-75381077 Msa0043910:CDS 55.0%
GTCAGAACGGCTGTGTATGC+TGG - chr1_1:75381107-75381126 Msa0043910:CDS 55.0%
! GGACTGGTGAGTTCTAGCAG+AGG - chr1_1:75381995-75382014 Msa0043910:five_prime_UTR 55.0%
GAGGCAGTGATGTGCTCCAT+TGG - chr1_1:75382014-75382033 Msa0043910:five_prime_UTR 55.0%
GTGTCTTGTCAGACACCGGC+CGG + chr1_1:75380292-75380311 None:intergenic 60.0%
CTGTGTCACGGGCCACATCA+TGG + chr1_1:75380677-75380696 None:intergenic 60.0%
!!! CCCTTTGTTTTGGGGGGGTG+TGG - chr1_1:75380835-75380854 Msa0043910:intron 60.0%
CCCACACCCCCCCAAAACAA+AGG + chr1_1:75380839-75380858 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 75379520 75382267 75379520 ID=Msa0043910;Name=Msa0043910
chr1_1 mRNA 75379520 75382267 75379520 ID=Msa0043910-mRNA-1;Parent=Msa0043910;Name=Msa0043910-mRNA-1;_AED=0.02;_eAED=0.02;_QI=282|1|1|1|1|1|4|263|215
chr1_1 exon 75379520 75379889 75379520 ID=Msa0043910-mRNA-1:exon:25408;Parent=Msa0043910-mRNA-1
chr1_1 exon 75380605 75380750 75380605 ID=Msa0043910-mRNA-1:exon:25407;Parent=Msa0043910-mRNA-1
chr1_1 exon 75380997 75381169 75380997 ID=Msa0043910-mRNA-1:exon:25406;Parent=Msa0043910-mRNA-1
chr1_1 exon 75381764 75382267 75381764 ID=Msa0043910-mRNA-1:exon:25405;Parent=Msa0043910-mRNA-1
chr1_1 five_prime_UTR 75381986 75382267 75381986 ID=Msa0043910-mRNA-1:five_prime_utr;Parent=Msa0043910-mRNA-1
chr1_1 CDS 75381764 75381985 75381764 ID=Msa0043910-mRNA-1:cds;Parent=Msa0043910-mRNA-1
chr1_1 CDS 75380997 75381169 75380997 ID=Msa0043910-mRNA-1:cds;Parent=Msa0043910-mRNA-1
chr1_1 CDS 75380605 75380750 75380605 ID=Msa0043910-mRNA-1:cds;Parent=Msa0043910-mRNA-1
chr1_1 CDS 75379783 75379889 75379783 ID=Msa0043910-mRNA-1:cds;Parent=Msa0043910-mRNA-1
chr1_1 three_prime_UTR 75379520 75379782 75379520 ID=Msa0043910-mRNA-1:three_prime_utr;Parent=Msa0043910-mRNA-1
Gene Sequence

>Msa0043910

ATGGTTGTAATGGATCATTCCGATTTAGCGATTGCGTATCCTCTTTCTGCCATTGCCGAAGCCTTTGAGGATCTTTCCACAAAGGTTCAGGGAATCAAGAACGGTTCCTCCACTCAACATATTCGCTTAGACTCTTTCTGTGAAATTGCTTCTCTTGTTTCTGTTCTTTTTCGTTGTCTTGGTCTTGCTTTTAAATTCGCTGAAATGGAATACGTTGCCAAGCTACATGGACTGGTGGAAGCATCAAAGAAGTATCAGACTCTACAAGATGTAATTGACCATGATGTGGCCCGTGACACAGTGAAAACATCTGGAAGCTATTCACGTAATCTACGCAGAGTTCGCCAGGGTCTTGATCTCGTTAGAGCTATATTCGAACAACTTTTGTCAACTAGTGATATTTATCTGAAAGAAGTGGCGTCAACAGCTTATGGAGAGGTTTGTGCACCGTATCACTCATGGGGAGTCAGAACGGCTGTGTATGCTGGAATGTATACACTTCCAACAAGAGACCAACTTTTTGTAAAGCTCAATGAAACAGAGCAATCAGCGGAGAAGAAGATGAGAAGGTACATTACTGCCTCACGTCCAGTTATAGAATACATTGATAAACTGTACCTTTCTCGAAATATTTCATTGGACTGGTGA
Protein sequence

>Msa0043910

MVVMDHSDLAIAYPLSAIAEAFEDLSTKVQGIKNGSSTQHIRLDSFCEIASLVSVLFRCLGLAFKFAEMEYVAKLHGLVEASKKYQTLQDVIDHDVARDTVKTSGSYSRNLRRVRQGLDLVRAIFEQLLSTSDIYLKEVASTAYGEVCAPYHSWGVRTAVYAGMYTLPTRDQLFVKLNETEQSAEKKMRRYITASRPVIEYIDKLYLSRNISLDW*