AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0090270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0090270 MtrunA17_Chr1g0209981 97.664 214 5 0 2 215 1 214 2.18e-158 436
Msa0090270 MtrunA17_Chr2g0292061 46.766 201 103 1 15 215 79 275 2.96e-62 195
Msa0090270 MtrunA17_Chr2g0292701 38.308 201 118 1 15 215 64 258 3.12e-50 164
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0090270 AT4G39670.1 66.010 203 68 1 14 215 27 229 1.59e-99 288
Msa0090270 AT2G34690.1 44.828 203 106 2 14 215 9 206 1.34e-58 184

Find 68 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCGGCTATTTGGAGATTT+AGG 0.095751 1_2:-72151879 Msa0090270:three_prime_UTR
CTGTATATACATAATCTATT+TGG 0.187363 1_2:-72151788 Msa0090270:three_prime_UTR
GAAAGAGCAATAATGAAATT+TGG 0.219603 1_2:-72151735 Msa0090270:three_prime_UTR
TCAGTTTCTCAGCGGCTATT+TGG 0.268239 1_2:-72151888 Msa0090270:three_prime_UTR
AGCGGCTATTTGGAGATTTA+GGG 0.286497 1_2:-72151878 Msa0090270:three_prime_UTR
TTATCAATGTATTCTATAAC+TGG 0.304225 1_2:+72152035 None:intergenic
GGATCTTTCCACAAAGGTTC+AGG 0.305144 1_2:-72154119 Msa0090270:CDS
AAACACTTGAAACGCAAATA+AGG 0.318134 1_2:+72154434 None:intergenic
CTTGATTCCCTGAACCTTTG+TGG 0.341847 1_2:+72154111 None:intergenic
TGCCATTGCCGAAGCCTTTG+AGG 0.347970 1_2:-72154140 Msa0090270:CDS
AGGATACGCAATCGCTAAAT+CGG 0.356164 1_2:+72154168 None:intergenic
TCATACACACCCGTATTCAT+AGG 0.367979 1_2:-72154406 Msa0090270:five_prime_UTR
TTTGTAAAGCTCAATGAAAC+AGG 0.368946 1_2:-72152821 Msa0090270:intron
ATTTCATTATTGCTCTTTCA+AGG 0.369989 1_2:+72151739 None:intergenic
AAGAAAGAAAGAGAGTGAAT+AGG 0.376034 1_2:+72154363 None:intergenic
GAAGTGGCGTCAACAGCTTA+TGG 0.379855 1_2:-72152929 Msa0090270:CDS
CCTTTCTCGAAATATTTCAT+TGG 0.382644 1_2:-72152006 Msa0090270:CDS
AAAACAAACGATGGTTGTAA+TGG 0.401175 1_2:-72154197 Msa0090270:exon
CTCGAAATATTTCATTGGAC+TGG 0.428539 1_2:-72152001 Msa0090270:CDS
TAATCTACGCAGAGTTCGCC+AGG 0.430093 1_2:-72153260 Msa0090270:CDS
GTCAGAACGGCTGTGTATGC+TGG 0.431196 1_2:-72152875 Msa0090270:CDS
AAGAGAGTGAATAGGAAGGA+AGG 0.445346 1_2:+72154371 None:intergenic
CGTGACACAGTGAAAACATC+TGG 0.453856 1_2:-72153295 Msa0090270:CDS
AGGAAGGTTCCCTATGAATA+CGG 0.461002 1_2:+72154396 None:intergenic
AATAGGAAGGAAGGGAAGGA+AGG 0.476701 1_2:+72154380 None:intergenic
AGAGAGTGAATAGGAAGGAA+GGG 0.478751 1_2:+72154372 None:intergenic
CCAATGAAATATTTCGAGAA+AGG 0.487284 1_2:+72152006 None:intergenic
TTTGTTGTAGTCGATCTGTT+CGG 0.498873 1_2:-72151920 Msa0090270:three_prime_UTR
GGAAAGATCCTCAAAGGCTT+CGG 0.500738 1_2:+72154132 None:intergenic
TATGAATACGGGTGTGTATG+AGG 0.504151 1_2:+72154408 None:intergenic
GATTGGTATGCTCAGCTACA+TGG 0.504762 1_2:-72153379 Msa0090270:intron
TTTGTGCACCGTATCACTCA+TGG 0.508447 1_2:-72152901 Msa0090270:CDS
TATATACATAATCTATTTGG+AGG 0.509298 1_2:-72151785 Msa0090270:three_prime_UTR
TTTCATTATTGCTCTTTCAA+GGG 0.518528 1_2:+72151740 None:intergenic
GATCTTTCCACAAAGGTTCA+GGG 0.519873 1_2:-72154118 Msa0090270:CDS
AGTGAATAGGAAGGAAGGGA+AGG 0.522382 1_2:+72154376 None:intergenic
CTGTGTCACGGGCCACATCA+TGG 0.522770 1_2:+72153308 None:intergenic
TTGTGCACCGTATCACTCAT+GGG 0.532403 1_2:-72152900 Msa0090270:CDS
GAGGCAGTGATGTGCTCCAT+TGG 0.532940 1_2:-72151966 Msa0090270:three_prime_UTR
ATCCTCAAAGGCTTCGGCAA+TGG 0.535128 1_2:+72154138 None:intergenic
AAGAAAGAGAGTGAATAGGA+AGG 0.544514 1_2:+72154367 None:intergenic
CTGACTCCCCATGAGTGATA+CGG 0.553379 1_2:+72152893 None:intergenic
CAGCGGAGAAGAAGATGAGA+AGG 0.559369 1_2:-72152076 Msa0090270:CDS
CATACACACCCGTATTCATA+GGG 0.563694 1_2:-72154405 Msa0090270:five_prime_UTR
GGAAGGTTCCCTATGAATAC+GGG 0.573432 1_2:+72154397 None:intergenic
GCTTCGGCAATGGCAGAAAG+AGG 0.573499 1_2:+72154148 None:intergenic
CTCTAACGAGATCAAGACCC+TGG 0.574080 1_2:+72153242 None:intergenic
CTTTGAGGATCTTTCCACAA+AGG 0.574860 1_2:-72154125 Msa0090270:CDS
CTTTGTGGAAAGATCCTCAA+AGG 0.582564 1_2:+72154126 None:intergenic
TCACTCATGGGGAGTCAGAA+CGG 0.583291 1_2:-72152888 Msa0090270:CDS
TGCTCAGCTACATGGACTGG+TGG 0.589627 1_2:-72153371 Msa0090270:intron
GTATGCTCAGCTACATGGAC+TGG 0.590660 1_2:-72153374 Msa0090270:intron
ATAAGGAAAATGTCAACCGC+TGG 0.593477 1_2:+72154451 None:intergenic
GGAGTCTTACGATGAAATGT+CGG 0.605581 1_2:+72154285 None:intergenic
GCATTGCACTGCTATACCAA+TGG 0.612863 1_2:+72151950 None:intergenic
TGATATTTATCTGAAAGAAG+TGG 0.618563 1_2:-72152945 Msa0090270:CDS
GTCTAAGCGAATATGTTGAG+TGG 0.619668 1_2:+72154078 None:intergenic
TGAAATGGAATACGTTGCCA+AGG 0.620132 1_2:-72153987 Msa0090270:intron
GTATTCTATAACTGGACGTG+AGG 0.634779 1_2:+72152043 None:intergenic
AAGGTTCAGGGAATCAAGAA+CGG 0.645785 1_2:-72154106 Msa0090270:CDS
GGCGTCAACAGCTTATGGAG+AGG 0.646741 1_2:-72152924 Msa0090270:CDS
TAAGCGAATATGTTGAGTGG+AGG 0.653086 1_2:+72154081 None:intergenic
TGTGCACCGTATCACTCATG+GGG 0.681218 1_2:-72152899 Msa0090270:CDS
TTAATTAGTCAGTTTCTCAG+CGG 0.684824 1_2:-72151896 Msa0090270:three_prime_UTR
TGTTATTGCAGAGCAATCAG+CGG 0.688575 1_2:-72152093 Msa0090270:intron
AGATGTAATTGACCATGATG+TGG 0.712076 1_2:-72153320 Msa0090270:CDS
AATCTACGCAGAGTTCGCCA+GGG 0.712951 1_2:-72153259 Msa0090270:CDS
GGACTGGTGAGTTCTAGCAG+AGG 0.732675 1_2:-72151985 Msa0090270:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAATTTTTGATACATTAA+GGG + chr1_2:72153521-72153540 None:intergenic 10.0%
!!! TATAAATTTTTGATACATTA+AGG + chr1_2:72153522-72153541 None:intergenic 10.0%
!! AAAAAAAGAACAAAAAAATT+AGG - chr1_2:72154355-72154374 Msa0090270:five_prime_UTR 10.0%
!!! ATTGAAAAATAATTAGTTTC+TGG + chr1_2:72151873-72151892 None:intergenic 15.0%
!!! TATTAGTTTATCATATTATC+TGG - chr1_2:72152772-72152791 Msa0090270:intron 15.0%
!!! ATTAGTTTATCATATTATCT+GGG - chr1_2:72152773-72152792 Msa0090270:intron 15.0%
!!! TTTGTGATTTCTTTTTATGA+AGG + chr1_2:72151969-72151988 None:intergenic 20.0%
!! ATAATTTGACATTTGATACA+AGG - chr1_2:72152346-72152365 Msa0090270:intron 20.0%
!!! AAAAATATTGTGAGAGTTTT+AGG - chr1_2:72152619-72152638 Msa0090270:intron 20.0%
!!! AAAGTGTTACATGTATAAAT+AGG + chr1_2:72153024-72153043 None:intergenic 20.0%
!!! TTGTTTTGTTTTGTTATGTT+CGG - chr1_2:72153415-72153434 Msa0090270:intron 20.0%
!!! GTCTTATGTTACTAATTTTA+TGG - chr1_2:72153557-72153576 Msa0090270:intron 20.0%
!!! ACTCTATAATGCTTTTATAT+TGG - chr1_2:72153723-72153742 Msa0090270:intron 20.0%
!! AAATAAACAGACTAATGAAA+GGG + chr1_2:72153917-72153936 None:intergenic 20.0%
!! AAAATAAACAGACTAATGAA+AGG + chr1_2:72153918-72153937 None:intergenic 20.0%
!!! ATTATTTCTATGTAAGATGA+AGG + chr1_2:72154079-72154098 None:intergenic 20.0%
!! TTATCAATGTATTCTATAAC+TGG + chr1_2:72154172-72154191 None:intergenic 20.0%
!!! AAATTAGGATTTTGCTAAAA+CGG - chr1_2:72154370-72154389 Msa0090270:five_prime_UTR 20.0%
!! CTGTATATACATAATCTATT+TGG - chr1_2:72154416-72154435 Msa0090270:five_prime_UTR 20.0%
!! TATATACATAATCTATTTGG+AGG - chr1_2:72154419-72154438 Msa0090270:five_prime_UTR 20.0%
!!! AGTGATTTTAAAACAAACGA+TGG - chr1_2:72151998-72152017 Msa0090270:CDS 25.0%
! GTGTAAAACATTACATACAT+TGG + chr1_2:72152528-72152547 None:intergenic 25.0%
! TGATGTGAATATATGATGAT+TGG - chr1_2:72152808-72152827 Msa0090270:intron 25.0%
! TGATATTTATCTGAAAGAAG+TGG - chr1_2:72153259-72153278 Msa0090270:CDS 25.0%
! ACTAATAGAATACACATTTG+AGG - chr1_2:72153626-72153645 Msa0090270:intron 25.0%
! AACAAAGAAAAACCACTATA+CGG + chr1_2:72153770-72153789 None:intergenic 25.0%
! TTTCATTATTGCTCTTTCAA+GGG + chr1_2:72154467-72154486 None:intergenic 25.0%
! ATTTCATTATTGCTCTTTCA+AGG + chr1_2:72154468-72154487 None:intergenic 25.0%
!! TTGATGCTTTTTATTACCAG+CGG - chr1_2:72151737-72151756 Msa0090270:three_prime_UTR 30.0%
AAACACTTGAAACGCAAATA+AGG + chr1_2:72151773-72151792 None:intergenic 30.0%
AAGAAAGAAAGAGAGTGAAT+AGG + chr1_2:72151844-72151863 None:intergenic 30.0%
CTTTGATGAAACGTCAAAAA+AGG + chr1_2:72151943-72151962 None:intergenic 30.0%
AAAACAAACGATGGTTGTAA+TGG - chr1_2:72152007-72152026 Msa0090270:CDS 30.0%
! TGCTTTTAAATTCGCTGAAA+TGG - chr1_2:72152202-72152221 Msa0090270:intron 30.0%
ATCGTCATTGCTTATCTTAA+TGG - chr1_2:72152249-72152268 Msa0090270:intron 30.0%
CAATGAGTCTATCTAATCAA+AGG - chr1_2:72152404-72152423 Msa0090270:intron 30.0%
TGTCATCATGACAAATATCA+AGG + chr1_2:72152440-72152459 None:intergenic 30.0%
TGATATTTGTCATGATGACA+TGG - chr1_2:72152440-72152459 Msa0090270:intron 30.0%
TTACAAACACTTCACATTGA+AGG - chr1_2:72152475-72152494 Msa0090270:intron 30.0%
! TTTAGGATACTTCATTATGC+TGG - chr1_2:72152636-72152655 Msa0090270:intron 30.0%
!! TTTTGAGAATCCCTTTGTTT+TGG - chr1_2:72153047-72153066 Msa0090270:intron 30.0%
!!! TTTGAGAATCCCTTTGTTTT+GGG - chr1_2:72153048-72153067 Msa0090270:intron 30.0%
TGGTATGAAAGTAAACAACA+TGG + chr1_2:72153108-72153127 None:intergenic 30.0%
GTTTACTTTCATACCAGATT+TGG - chr1_2:72153112-72153131 Msa0090270:intron 30.0%
! GAGTTTAAAGTAACCAAATC+TGG + chr1_2:72153128-72153147 None:intergenic 30.0%
TTAAAGTAACCACATTTGAC+AGG + chr1_2:72153186-72153205 None:intergenic 30.0%
CATTGAGCTTTACAAAAAGT+TGG + chr1_2:72153379-72153398 None:intergenic 30.0%
TTTGTAAAGCTCAATGAAAC+AGG - chr1_2:72153383-72153402 Msa0090270:intron 30.0%
GACAAAAATGACAGTTTACT+TGG + chr1_2:72153466-72153485 None:intergenic 30.0%
TACACATTTGAGGATCAATA+TGG - chr1_2:72153636-72153655 Msa0090270:intron 30.0%
GATGCATTTACATACTATAG+TGG - chr1_2:72153698-72153717 Msa0090270:intron 30.0%
! GAGATTTATACAAGGCTTTT+CGG + chr1_2:72153954-72153973 None:intergenic 30.0%
ACAACACAGAGATTTATACA+AGG + chr1_2:72153962-72153981 None:intergenic 30.0%
GATTTGAGTATATAGCAAGT+TGG - chr1_2:72154015-72154034 Msa0090270:CDS 30.0%
TTCTATGTAAGATGAAGGAT+TGG + chr1_2:72154074-72154093 None:intergenic 30.0%
CCAATGAAATATTTCGAGAA+AGG + chr1_2:72154201-72154220 None:intergenic 30.0%
CCTTTCTCGAAATATTTCAT+TGG - chr1_2:72154198-72154217 Msa0090270:exon 30.0%
TTAATTAGTCAGTTTCTCAG+CGG - chr1_2:72154308-72154327 Msa0090270:five_prime_UTR 30.0%
AAGAAAGAGAGTGAATAGGA+AGG + chr1_2:72151840-72151859 None:intergenic 35.0%
!! TCTGTTCTTTTTCGTTGTCT+TGG - chr1_2:72152176-72152195 Msa0090270:intron 35.0%
ATGACGATGATGATATACCT+TGG + chr1_2:72152237-72152256 None:intergenic 35.0%
! TCAAAGTGTCATTGCTTCAT+AGG - chr1_2:72152586-72152605 Msa0090270:intron 35.0%
ACTTTATACCCACGTATTTC+TGG - chr1_2:72152691-72152710 Msa0090270:intron 35.0%
TAGATAGACCAGAAATACGT+GGG + chr1_2:72152702-72152721 None:intergenic 35.0%
AGATGTAATTGACCATGATG+TGG - chr1_2:72152884-72152903 Msa0090270:CDS 35.0%
! TCGAACAACTTTTGTCAACT+AGG - chr1_2:72152991-72153010 Msa0090270:intron 35.0%
!!! TTGAGAATCCCTTTGTTTTG+GGG - chr1_2:72153049-72153068 Msa0090270:intron 35.0%
TGACAGGAAAGTAAACAACA+TGG + chr1_2:72153170-72153189 None:intergenic 35.0%
GTTTACTTTCCTGTCAAATG+TGG - chr1_2:72153174-72153193 Msa0090270:intron 35.0%
! ACAAAAAGTTGGTCTCTTGT+TGG + chr1_2:72153368-72153387 None:intergenic 35.0%
TTTGTCTCTAAATGTGTGTG+AGG - chr1_2:72153480-72153499 Msa0090270:intron 35.0%
AGTAACATAAGACACACTTG+AGG + chr1_2:72153550-72153569 None:intergenic 35.0%
GTGTCTTATGTTTGTCAGTT+TGG + chr1_2:72153584-72153603 None:intergenic 35.0%
GAAAAACAGATTCCGTATAG+TGG - chr1_2:72153755-72153774 Msa0090270:intron 35.0%
AGGATGACATCTTACAAGAA+GGG + chr1_2:72153881-72153900 None:intergenic 35.0%
TAGGATGACATCTTACAAGA+AGG + chr1_2:72153882-72153901 None:intergenic 35.0%
TCTCTGTGTTGTGAAACAAA+TGG - chr1_2:72153970-72153989 Msa0090270:intron 35.0%
CTCGAAATATTTCATTGGAC+TGG - chr1_2:72154203-72154222 Msa0090270:exon 35.0%
! TTTGTTGTAGTCGATCTGTT+CGG - chr1_2:72154284-72154303 Msa0090270:five_prime_UTR 35.0%
ATAAGGAAAATGTCAACCGC+TGG + chr1_2:72151756-72151775 None:intergenic 40.0%
TATGAATACGGGTGTGTATG+AGG + chr1_2:72151799-72151818 None:intergenic 40.0%
TCATACACACCCGTATTCAT+AGG - chr1_2:72151798-72151817 Msa0090270:three_prime_UTR 40.0%
CATACACACCCGTATTCATA+GGG - chr1_2:72151799-72151818 Msa0090270:three_prime_UTR 40.0%
AGGAAGGTTCCCTATGAATA+CGG + chr1_2:72151811-72151830 None:intergenic 40.0%
AGAGAGTGAATAGGAAGGAA+GGG + chr1_2:72151835-72151854 None:intergenic 40.0%
AAGAGAGTGAATAGGAAGGA+AGG + chr1_2:72151836-72151855 None:intergenic 40.0%
GGAGTCTTACGATGAAATGT+CGG + chr1_2:72151922-72151941 None:intergenic 40.0%
AGGATACGCAATCGCTAAAT+CGG + chr1_2:72152039-72152058 None:intergenic 40.0%
CTTTGTGGAAAGATCCTCAA+AGG + chr1_2:72152081-72152100 None:intergenic 40.0%
! CTTTGAGGATCTTTCCACAA+AGG - chr1_2:72152079-72152098 Msa0090270:CDS 40.0%
GATCTTTCCACAAAGGTTCA+GGG - chr1_2:72152086-72152105 Msa0090270:intron 40.0%
AAGGTTCAGGGAATCAAGAA+CGG - chr1_2:72152098-72152117 Msa0090270:intron 40.0%
TAAGCGAATATGTTGAGTGG+AGG + chr1_2:72152126-72152145 None:intergenic 40.0%
GTCTAAGCGAATATGTTGAG+TGG + chr1_2:72152129-72152148 None:intergenic 40.0%
TGAAATGGAATACGTTGCCA+AGG - chr1_2:72152217-72152236 Msa0090270:intron 40.0%
! AGTGTCATTGCTTCATAGGT+AGG - chr1_2:72152590-72152609 Msa0090270:intron 40.0%
CTAGATAGACCAGAAATACG+TGG + chr1_2:72152703-72152722 None:intergenic 40.0%
! AGATGTTTTCACTGTGTCAC+GGG + chr1_2:72152910-72152929 None:intergenic 40.0%
! CAGATGTTTTCACTGTGTCA+CGG + chr1_2:72152911-72152930 None:intergenic 40.0%
!!! TGAGAATCCCTTTGTTTTGG+GGG - chr1_2:72153050-72153069 Msa0090270:intron 40.0%
AACCTCAATCCTAACATGTG+AGG - chr1_2:72153843-72153862 Msa0090270:intron 40.0%
TCTTACAAGAAGGGTCATCT+AGG + chr1_2:72153872-72153891 None:intergenic 40.0%
GAAAGGGTTATTCGCATGTT+AGG + chr1_2:72153901-72153920 None:intergenic 40.0%
TGTTATTGCAGAGCAATCAG+CGG - chr1_2:72154111-72154130 Msa0090270:CDS 40.0%
GTATTCTATAACTGGACGTG+AGG + chr1_2:72154164-72154183 None:intergenic 40.0%
AGCGGCTATTTGGAGATTTA+GGG - chr1_2:72154326-72154345 Msa0090270:five_prime_UTR 40.0%
GGAAGGTTCCCTATGAATAC+GGG + chr1_2:72151810-72151829 None:intergenic 45.0%
AATAGGAAGGAAGGGAAGGA+AGG + chr1_2:72151827-72151846 None:intergenic 45.0%
AGTGAATAGGAAGGAAGGGA+AGG + chr1_2:72151831-72151850 None:intergenic 45.0%
GGAAAGATCCTCAAAGGCTT+CGG + chr1_2:72152075-72152094 None:intergenic 45.0%
GGATCTTTCCACAAAGGTTC+AGG - chr1_2:72152085-72152104 Msa0090270:CDS 45.0%
CTTGATTCCCTGAACCTTTG+TGG + chr1_2:72152096-72152115 None:intergenic 45.0%
! CTTCACATTGAAGGTGTGTC+CGG - chr1_2:72152484-72152503 Msa0090270:intron 45.0%
! ATTGGTGTCTTGTCAGACAC+CGG + chr1_2:72152510-72152529 None:intergenic 45.0%
!! GCTGGTTGTTTTCTCGCTTT+TGG - chr1_2:72152654-72152673 Msa0090270:intron 45.0%
GATTGGTATGCTCAGCTACA+TGG - chr1_2:72152825-72152844 Msa0090270:CDS 45.0%
CGTGACACAGTGAAAACATC+TGG - chr1_2:72152909-72152928 Msa0090270:CDS 45.0%
!!! GAGAATCCCTTTGTTTTGGG+GGG - chr1_2:72153051-72153070 Msa0090270:intron 45.0%
!!! AGAATCCCTTTGTTTTGGGG+GGG - chr1_2:72153052-72153071 Msa0090270:intron 45.0%
TTTGTGCACCGTATCACTCA+TGG - chr1_2:72153303-72153322 Msa0090270:CDS 45.0%
TTGTGCACCGTATCACTCAT+GGG - chr1_2:72153304-72153323 Msa0090270:CDS 45.0%
! TCCACGAATGTGTCTTTTGC+TGG + chr1_2:72153662-72153681 None:intergenic 45.0%
TGCCTCACATGTTAGGATTG+AGG + chr1_2:72153848-72153867 None:intergenic 45.0%
TCTAGGTTGCCTCACATGTT+AGG + chr1_2:72153855-72153874 None:intergenic 45.0%
! ACAAGGCTTTTCGGCTAAGT+TGG + chr1_2:72153945-72153964 None:intergenic 45.0%
GCATTGCACTGCTATACCAA+TGG + chr1_2:72154257-72154276 None:intergenic 45.0%
TCAGTTTCTCAGCGGCTATT+TGG - chr1_2:72154316-72154335 Msa0090270:five_prime_UTR 45.0%
CAGCGGCTATTTGGAGATTT+AGG - chr1_2:72154325-72154344 Msa0090270:five_prime_UTR 45.0%
ATCCTCAAAGGCTTCGGCAA+TGG + chr1_2:72152069-72152088 None:intergenic 50.0%
GTATGCTCAGCTACATGGAC+TGG - chr1_2:72152830-72152849 Msa0090270:CDS 50.0%
TAATCTACGCAGAGTTCGCC+AGG - chr1_2:72152944-72152963 Msa0090270:CDS 50.0%
AATCTACGCAGAGTTCGCCA+GGG - chr1_2:72152945-72152964 Msa0090270:CDS 50.0%
CTCTAACGAGATCAAGACCC+TGG + chr1_2:72152965-72152984 None:intergenic 50.0%
GAAGTGGCGTCAACAGCTTA+TGG - chr1_2:72153275-72153294 Msa0090270:CDS 50.0%
TGTGCACCGTATCACTCATG+GGG - chr1_2:72153305-72153324 Msa0090270:CDS 50.0%
CTGACTCCCCATGAGTGATA+CGG + chr1_2:72153314-72153333 None:intergenic 50.0%
TCACTCATGGGGAGTCAGAA+CGG - chr1_2:72153316-72153335 Msa0090270:CDS 50.0%
GCCAGCAAAAGACACATTCG+TGG - chr1_2:72153658-72153677 Msa0090270:intron 50.0%
CAGCGGAGAAGAAGATGAGA+AGG - chr1_2:72154128-72154147 Msa0090270:CDS 50.0%
GCTTCGGCAATGGCAGAAAG+AGG + chr1_2:72152059-72152078 None:intergenic 55.0%
TGCCATTGCCGAAGCCTTTG+AGG - chr1_2:72152064-72152083 Msa0090270:CDS 55.0%
! ACATTGAAGGTGTGTCCGGC+CGG - chr1_2:72152488-72152507 Msa0090270:intron 55.0%
!! TGCTCAGCTACATGGACTGG+TGG - chr1_2:72152833-72152852 Msa0090270:CDS 55.0%
CCACACCCCCCCAAAACAAA+GGG + chr1_2:72153060-72153079 None:intergenic 55.0%
!!! CCTTTGTTTTGGGGGGGTGT+GGG - chr1_2:72153058-72153077 Msa0090270:intron 55.0%
GGCGTCAACAGCTTATGGAG+AGG - chr1_2:72153280-72153299 Msa0090270:CDS 55.0%
GTCAGAACGGCTGTGTATGC+TGG - chr1_2:72153329-72153348 Msa0090270:CDS 55.0%
! GGACTGGTGAGTTCTAGCAG+AGG - chr1_2:72154219-72154238 Msa0090270:five_prime_UTR 55.0%
GAGGCAGTGATGTGCTCCAT+TGG - chr1_2:72154238-72154257 Msa0090270:five_prime_UTR 55.0%
GTGTCTTGTCAGACACCGGC+CGG + chr1_2:72152506-72152525 None:intergenic 60.0%
CTGTGTCACGGGCCACATCA+TGG + chr1_2:72152899-72152918 None:intergenic 60.0%
!!! CCCTTTGTTTTGGGGGGGTG+TGG - chr1_2:72153057-72153076 Msa0090270:intron 60.0%
CCCACACCCCCCCAAAACAA+AGG + chr1_2:72153061-72153080 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 72151735 72154491 72151735 ID=Msa0090270;Name=Msa0090270
chr1_2 mRNA 72151735 72154491 72151735 ID=Msa0090270-mRNA-1;Parent=Msa0090270;Name=Msa0090270-mRNA-1;_AED=0.01;_eAED=0.01;_QI=282|1|1|1|1|1|4|263|215
chr1_2 exon 72151735 72152104 72151735 ID=Msa0090270-mRNA-1:exon:25020;Parent=Msa0090270-mRNA-1
chr1_2 exon 72152822 72152967 72152822 ID=Msa0090270-mRNA-1:exon:25019;Parent=Msa0090270-mRNA-1
chr1_2 exon 72153214 72153386 72153214 ID=Msa0090270-mRNA-1:exon:25018;Parent=Msa0090270-mRNA-1
chr1_2 exon 72153988 72154491 72153988 ID=Msa0090270-mRNA-1:exon:25017;Parent=Msa0090270-mRNA-1
chr1_2 five_prime_UTR 72154210 72154491 72154210 ID=Msa0090270-mRNA-1:five_prime_utr;Parent=Msa0090270-mRNA-1
chr1_2 CDS 72153988 72154209 72153988 ID=Msa0090270-mRNA-1:cds;Parent=Msa0090270-mRNA-1
chr1_2 CDS 72153214 72153386 72153214 ID=Msa0090270-mRNA-1:cds;Parent=Msa0090270-mRNA-1
chr1_2 CDS 72152822 72152967 72152822 ID=Msa0090270-mRNA-1:cds;Parent=Msa0090270-mRNA-1
chr1_2 CDS 72151998 72152104 72151998 ID=Msa0090270-mRNA-1:cds;Parent=Msa0090270-mRNA-1
chr1_2 three_prime_UTR 72151735 72151997 72151735 ID=Msa0090270-mRNA-1:three_prime_utr;Parent=Msa0090270-mRNA-1
Gene Sequence

>Msa0090270

ATGGTTGTAATGGATCATTCCGATTTAGCGATTGCGTATCCTCTTTCTGCCATTGCCGAAGCCTTTGAGGATCTTTCCACAAAGGTTCAGGGAATCAAGAACGGTTCCTCCACTCAACATATTCGCTTAGACTCTTTCTGTGAAATTGCTTCTCTTGTTTCTGTTCTTTTTCGTTGTCTTGGTCTTGCTTTTAAATTCGCTGAAATGGAATACGTTGCCAAGCTACATGGACTGGTGGAAGCATCAAAGAAGTATCAGACTCTACAAGATGTAATTGACCATGATGTGGCCCGTGACACAGTGAAAACATCTGGAAGCTATTCACGTAATCTACGCAGAGTTCGCCAGGGTCTTGATCTCGTTAGAGCTATATTCGAACAACTTTTGTCAACTAGTGATATTTATCTGAAAGAAGTGGCGTCAACAGCTTATGGAGAGGTTTGTGCACCGTATCACTCATGGGGAGTCAGAACGGCTGTGTATGCTGGAATGTATACACTTCCAACAAGAGACCAACTTTTTGTAAAGCTCAATGAAACAGAGCAATCAGCGGAGAAGAAGATGAGAAGGTACATTACTGCCTCACGTCCAGTTATAGAATACATTGATAAACTGTACCTTTCTCGAAATATTTCATTGGACTGGTGA
Protein sequence

>Msa0090270

MVVMDHSDLAIAYPLSAIAEAFEDLSTKVQGIKNGSSTQHIRLDSFCEIASLVSVLFRCLGLAFKFAEMEYVAKLHGLVEASKKYQTLQDVIDHDVARDTVKTSGSYSRNLRRVRQGLDLVRAIFEQLLSTSDIYLKEVASTAYGEVCAPYHSWGVRTAVYAGMYTLPTRDQLFVKLNETEQSAEKKMRRYITASRPVIEYIDKLYLSRNISLDW*