Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0137670 | sp|Q8L7U7|ACDH_ARATH | 66.010 | 203 | 68 | 1 | 14 | 215 | 27 | 229 | 2.88e-98 | 288 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0137670 | A0A072VQD8 | 97.196 | 214 | 6 | 0 | 2 | 215 | 1 | 214 | 3.35e-154 | 435 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043910 | Msa0137670 | 0.871817 | 5.117677e-67 | -8.615850e-47 |
| Msa0090270 | Msa0137670 | 0.808417 | 3.129398e-50 | -8.615850e-47 |
| Msa0137670 | Msa0182760 | 0.802572 | 5.263577e-49 | -8.615850e-47 |
| Msa0137670 | Msa0860250 | 0.809372 | 1.955104e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0137670 | MtrunA17_Chr1g0209981 | 97.196 | 214 | 6 | 0 | 2 | 215 | 1 | 214 | 6.46e-158 | 435 |
| Msa0137670 | MtrunA17_Chr2g0292061 | 46.766 | 201 | 103 | 1 | 15 | 215 | 79 | 275 | 2.38e-62 | 195 |
| Msa0137670 | MtrunA17_Chr2g0292701 | 38.308 | 201 | 118 | 1 | 15 | 215 | 64 | 258 | 2.68e-50 | 164 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0137670 | AT4G39670.1 | 66.010 | 203 | 68 | 1 | 14 | 215 | 27 | 229 | 2.93e-99 | 288 |
| Msa0137670 | AT2G34690.1 | 44.828 | 203 | 106 | 2 | 14 | 215 | 9 | 206 | 1.20e-58 | 184 |
Find 68 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCGGCTATTTGGAGATTT+AGG | 0.095751 | 1_3:+70304338 | Msa0137670:three_prime_UTR |
| CTGTATATACATAATCTATT+TGG | 0.187363 | 1_3:+70304429 | Msa0137670:three_prime_UTR |
| GAAAGAGCAATACTGAAATT+TGG | 0.217120 | 1_3:+70304482 | Msa0137670:three_prime_UTR |
| TCAGTTTCTCAGCGGCTATT+TGG | 0.268239 | 1_3:+70304329 | Msa0137670:three_prime_UTR |
| AGCGGCTATTTGGAGATTTA+GGG | 0.286497 | 1_3:+70304339 | Msa0137670:three_prime_UTR |
| TGCTTTCAAATTCGCTGAAA+TGG | 0.298390 | 1_3:+70302267 | Msa0137670:CDS |
| TTATCAATGTATTCTATAAC+TGG | 0.304225 | 1_3:-70304182 | None:intergenic |
| GGATCTTTCCACAAAGGTTC+AGG | 0.305144 | 1_3:+70302150 | Msa0137670:CDS |
| CTTGATTCCCTGAACCTTTG+TGG | 0.341847 | 1_3:-70302158 | None:intergenic |
| TTCCATTGCCGAAGCCTTTG+AGG | 0.350410 | 1_3:+70302129 | Msa0137670:CDS |
| AGGATACGCAATCGCTAAAT+CGG | 0.356164 | 1_3:-70302101 | None:intergenic |
| TCATACACACCCGTATTCAT+AGG | 0.367979 | 1_3:+70301863 | Msa0137670:five_prime_UTR |
| TTTGTAAAGCTCAATGAAAC+AGG | 0.368946 | 1_3:+70303396 | Msa0137670:CDS |
| AAGAAAGAAAGAGAGTGAAT+AGG | 0.376034 | 1_3:-70301906 | None:intergenic |
| GAAGTGGCGTCAACAGCTTA+TGG | 0.379855 | 1_3:+70303288 | Msa0137670:CDS |
| CCTTTCTCGAAATATTTCAT+TGG | 0.382644 | 1_3:+70304211 | Msa0137670:CDS |
| ATTTCAGTATTGCTCTTTCA+AGG | 0.393384 | 1_3:-70304478 | None:intergenic |
| AAAACAAACGATGGTTGTAA+TGG | 0.401175 | 1_3:+70302072 | Msa0137670:exon |
| CTCGAAATATTTCATTGGAC+TGG | 0.428539 | 1_3:+70304216 | Msa0137670:CDS |
| TAATCTACGCAGAGTTCGCC+AGG | 0.430093 | 1_3:+70302957 | Msa0137670:CDS |
| GTCAGAACGGCTGTGTATGC+TGG | 0.431196 | 1_3:+70303342 | Msa0137670:CDS |
| AAGAGAGTGAATAGGAAGGA+AGG | 0.445346 | 1_3:-70301898 | None:intergenic |
| CGTGACACAGTGAAAACATC+TGG | 0.453856 | 1_3:+70302922 | Msa0137670:CDS |
| AGGAAGGTTCCCTATGAATA+CGG | 0.461002 | 1_3:-70301873 | None:intergenic |
| AATAGGAAGGAAGGGAAGGA+AGG | 0.476701 | 1_3:-70301889 | None:intergenic |
| AGAGAGTGAATAGGAAGGAA+GGG | 0.478751 | 1_3:-70301897 | None:intergenic |
| CCAATGAAATATTTCGAGAA+AGG | 0.487284 | 1_3:-70304211 | None:intergenic |
| TTTGTTGTAGTCGATCTGTT+CGG | 0.498873 | 1_3:+70304297 | Msa0137670:three_prime_UTR |
| GGAAAGATCCTCAAAGGCTT+CGG | 0.500738 | 1_3:-70302137 | None:intergenic |
| TATGAATACGGGTGTGTATG+AGG | 0.504151 | 1_3:-70301861 | None:intergenic |
| GATTGGTATGCTCAGCTACA+TGG | 0.504762 | 1_3:+70302838 | Msa0137670:intron |
| TTTGTGCACCGTATCACTCA+TGG | 0.508447 | 1_3:+70303316 | Msa0137670:CDS |
| ATCCTCAAAGGCTTCGGCAA+TGG | 0.509074 | 1_3:-70302131 | None:intergenic |
| TATATACATAATCTATTTGG+AGG | 0.509298 | 1_3:+70304432 | Msa0137670:three_prime_UTR |
| GATCTTTCCACAAAGGTTCA+GGG | 0.519873 | 1_3:+70302151 | Msa0137670:CDS |
| AGTGAATAGGAAGGAAGGGA+AGG | 0.522382 | 1_3:-70301893 | None:intergenic |
| CTGTGTCACGGGCCACATCA+TGG | 0.522770 | 1_3:-70302909 | None:intergenic |
| TTGTGCACCGTATCACTCAT+GGG | 0.532403 | 1_3:+70303317 | Msa0137670:CDS |
| GAGGCAGTGATGTGCTCCAT+TGG | 0.532940 | 1_3:+70304251 | Msa0137670:three_prime_UTR |
| TTTCAGTATTGCTCTTTCAA+GGG | 0.538267 | 1_3:-70304477 | None:intergenic |
| AAGAAAGAGAGTGAATAGGA+AGG | 0.544514 | 1_3:-70301902 | None:intergenic |
| CTGACTCCCCATGAGTGATA+CGG | 0.553379 | 1_3:-70303324 | None:intergenic |
| CAGCGGAGAAGAAGATGAGA+AGG | 0.559369 | 1_3:+70304141 | Msa0137670:CDS |
| CATACACACCCGTATTCATA+GGG | 0.563694 | 1_3:+70301864 | Msa0137670:five_prime_UTR |
| GGAAGGTTCCCTATGAATAC+GGG | 0.573432 | 1_3:-70301872 | None:intergenic |
| CTCTAACGAGATCAAGACCC+TGG | 0.574080 | 1_3:-70302975 | None:intergenic |
| CTTTGAGGATCTTTCCACAA+AGG | 0.574860 | 1_3:+70302144 | Msa0137670:CDS |
| ATAAAGAAAATGTCAACCGC+TGG | 0.576083 | 1_3:-70301818 | None:intergenic |
| CTTTGTGGAAAGATCCTCAA+AGG | 0.582564 | 1_3:-70302143 | None:intergenic |
| TCACTCATGGGGAGTCAGAA+CGG | 0.583291 | 1_3:+70303329 | Msa0137670:CDS |
| TGCTCAGCTACATGGACTGG+TGG | 0.589627 | 1_3:+70302846 | Msa0137670:intron |
| GTATGCTCAGCTACATGGAC+TGG | 0.590660 | 1_3:+70302843 | Msa0137670:intron |
| GCTTCGGCAATGGAAGAAAG+AGG | 0.598100 | 1_3:-70302121 | None:intergenic |
| GGAGTCTTACGATGAAATGT+CGG | 0.605581 | 1_3:-70301984 | None:intergenic |
| GCATTGTACTGCTATACCAA+TGG | 0.613273 | 1_3:-70304267 | None:intergenic |
| TGATATTTATCTGAAAGAAG+TGG | 0.618563 | 1_3:+70303272 | Msa0137670:CDS |
| GTCTAAGCGAATATGTTGAG+TGG | 0.619668 | 1_3:-70302191 | None:intergenic |
| TGAAATGGAATACGTTGCCA+AGG | 0.620132 | 1_3:+70302282 | Msa0137670:CDS |
| GTATTCTATAACTGGACGTG+AGG | 0.634779 | 1_3:-70304174 | None:intergenic |
| AAGGTTCAGGGAATCAAGAA+CGG | 0.645785 | 1_3:+70302163 | Msa0137670:CDS |
| GGCGTCAACAGCTTATGGAG+AGG | 0.646741 | 1_3:+70303293 | Msa0137670:CDS |
| TAAGCGAATATGTTGAGTGG+AGG | 0.653086 | 1_3:-70302188 | None:intergenic |
| TGTGCACCGTATCACTCATG+GGG | 0.681218 | 1_3:+70303318 | Msa0137670:CDS |
| TTAATTAGTCAGTTTCTCAG+CGG | 0.684824 | 1_3:+70304321 | Msa0137670:three_prime_UTR |
| TGTTATTGCAGAGCAATCAG+CGG | 0.688575 | 1_3:+70304124 | Msa0137670:intron |
| AGATGTAATTGACCATGATG+TGG | 0.712076 | 1_3:+70302897 | Msa0137670:CDS |
| AATCTACGCAGAGTTCGCCA+GGG | 0.712951 | 1_3:+70302958 | Msa0137670:CDS |
| GGACTGGTGAGTTCTAGCAG+AGG | 0.732675 | 1_3:+70304232 | Msa0137670:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAATTTTTGATACATTAA+GGG | - | chr1_3:70303534-70303553 | None:intergenic | 10.0% |
| !!! | TATAAATTTTTGATACATTA+AGG | - | chr1_3:70303535-70303554 | None:intergenic | 10.0% |
| !! | AAAAAAAGAACAAAAAAATT+AGG | + | chr1_3:70304368-70304387 | Msa0137670:three_prime_UTR | 10.0% |
| !!! | ATTGAAAAATAATTAGTTTC+TGG | - | chr1_3:70301938-70301957 | None:intergenic | 15.0% |
| !!! | TATTAGTTTATCATATTATC+TGG | + | chr1_3:70302785-70302804 | Msa0137670:intron | 15.0% |
| !!! | ATTAGTTTATCATATTATCT+GGG | + | chr1_3:70302786-70302805 | Msa0137670:intron | 15.0% |
| !!! | TTTGTGATTTCTTTTTATGA+AGG | - | chr1_3:70302034-70302053 | None:intergenic | 20.0% |
| !! | ATAATTTGACATTTGATACA+AGG | + | chr1_3:70302407-70302426 | Msa0137670:intron | 20.0% |
| !!! | AAAAATATTGTGAGAGTTTT+AGG | + | chr1_3:70302632-70302651 | Msa0137670:intron | 20.0% |
| !!! | AAAGTGTTACATGTATAAAT+AGG | - | chr1_3:70303037-70303056 | None:intergenic | 20.0% |
| !!! | TTGTTTTGTTTTGTTATGTT+CGG | + | chr1_3:70303428-70303447 | Msa0137670:intron | 20.0% |
| !!! | GTCTTATGTTACTAATTTTA+TGG | + | chr1_3:70303570-70303589 | Msa0137670:intron | 20.0% |
| !!! | ACTCTATAATGCTTTTATAT+TGG | + | chr1_3:70303736-70303755 | Msa0137670:intron | 20.0% |
| !! | AAATAAACAGACTAATGAAA+GGG | - | chr1_3:70303930-70303949 | None:intergenic | 20.0% |
| !! | AAAATAAACAGACTAATGAA+AGG | - | chr1_3:70303931-70303950 | None:intergenic | 20.0% |
| !! | ACAACACAAAGATTTATATA+AGG | - | chr1_3:70303975-70303994 | None:intergenic | 20.0% |
| !!! | ATTATTTCTATGTAAGATGA+AGG | - | chr1_3:70304092-70304111 | None:intergenic | 20.0% |
| !! | TTATCAATGTATTCTATAAC+TGG | - | chr1_3:70304185-70304204 | None:intergenic | 20.0% |
| !!! | AAATTAGGATTTTGCTAAAA+CGG | + | chr1_3:70304383-70304402 | Msa0137670:three_prime_UTR | 20.0% |
| !! | CTGTATATACATAATCTATT+TGG | + | chr1_3:70304429-70304448 | Msa0137670:three_prime_UTR | 20.0% |
| !! | TATATACATAATCTATTTGG+AGG | + | chr1_3:70304432-70304451 | Msa0137670:three_prime_UTR | 20.0% |
| !!! | TTGATGTTTTTTATTACCAG+CGG | + | chr1_3:70301802-70301821 | Msa0137670:five_prime_UTR | 25.0% |
| !!! | AGTGATTTTAAAACAAACGA+TGG | + | chr1_3:70302063-70302082 | Msa0137670:exon | 25.0% |
| ! | GTGTAAAACATTACATACAT+TGG | - | chr1_3:70302589-70302608 | None:intergenic | 25.0% |
| ! | TGATGTGAATATATGATGAT+TGG | + | chr1_3:70302821-70302840 | Msa0137670:intron | 25.0% |
| ! | TGATATTTATCTGAAAGAAG+TGG | + | chr1_3:70303272-70303291 | Msa0137670:CDS | 25.0% |
| ! | ACTAATAGAATACACATTTG+AGG | + | chr1_3:70303639-70303658 | Msa0137670:intron | 25.0% |
| ! | AACAAAGAAAAACCACTATA+CGG | - | chr1_3:70303783-70303802 | None:intergenic | 25.0% |
| ! | AAGATTTATATAAGGCTTCT+CGG | - | chr1_3:70303967-70303986 | None:intergenic | 25.0% |
| AAGAAAGAAAGAGAGTGAAT+AGG | - | chr1_3:70301909-70301928 | None:intergenic | 30.0% | |
| CTTTGATGAAACGTCAAAAA+AGG | - | chr1_3:70302008-70302027 | None:intergenic | 30.0% | |
| AAAACAAACGATGGTTGTAA+TGG | + | chr1_3:70302072-70302091 | Msa0137670:exon | 30.0% | |
| ATCGTCATTGCTTATCTTAA+TGG | + | chr1_3:70302314-70302333 | Msa0137670:intron | 30.0% | |
| TGTCATCATCACAAATATCA+AGG | - | chr1_3:70302501-70302520 | None:intergenic | 30.0% | |
| ! | TGATATTTGTGATGATGACA+TGG | + | chr1_3:70302501-70302520 | Msa0137670:intron | 30.0% |
| TTACAAACACTTCACATTGA+AGG | + | chr1_3:70302536-70302555 | Msa0137670:intron | 30.0% | |
| ! | TTTAGGATACTTCATTATGC+TGG | + | chr1_3:70302649-70302668 | Msa0137670:intron | 30.0% |
| !! | TTTTGAGAATCCCTTTGTTT+TGG | + | chr1_3:70303060-70303079 | Msa0137670:intron | 30.0% |
| !!! | TTTGAGAATCCCTTTGTTTT+GGG | + | chr1_3:70303061-70303080 | Msa0137670:intron | 30.0% |
| TGGTATGAAAGTAAACAACA+TGG | - | chr1_3:70303121-70303140 | None:intergenic | 30.0% | |
| GTTTACTTTCATACCAGATT+TGG | + | chr1_3:70303125-70303144 | Msa0137670:intron | 30.0% | |
| ! | GAGTTTAAAGTAACCAAATC+TGG | - | chr1_3:70303141-70303160 | None:intergenic | 30.0% |
| TTAAAGTAACCACATTTGAC+AGG | - | chr1_3:70303199-70303218 | None:intergenic | 30.0% | |
| CATTGAGCTTTACAAAAAGT+TGG | - | chr1_3:70303392-70303411 | None:intergenic | 30.0% | |
| TTTGTAAAGCTCAATGAAAC+AGG | + | chr1_3:70303396-70303415 | Msa0137670:CDS | 30.0% | |
| GACAAAAATGACAGTTTACT+TGG | - | chr1_3:70303479-70303498 | None:intergenic | 30.0% | |
| TACACATTTGAGGATCAATA+TGG | + | chr1_3:70303649-70303668 | Msa0137670:intron | 30.0% | |
| GATGCATTTACATACTATAG+TGG | + | chr1_3:70303711-70303730 | Msa0137670:intron | 30.0% | |
| TCTTTGTGTTGTGAAACAAA+TGG | + | chr1_3:70303983-70304002 | Msa0137670:intron | 30.0% | |
| GATTTGAGTATATAGCAAGT+TGG | + | chr1_3:70304028-70304047 | Msa0137670:intron | 30.0% | |
| TTCTATGTAAGATGAAGGAT+TGG | - | chr1_3:70304087-70304106 | None:intergenic | 30.0% | |
| CCAATGAAATATTTCGAGAA+AGG | - | chr1_3:70304214-70304233 | None:intergenic | 30.0% | |
| CCTTTCTCGAAATATTTCAT+TGG | + | chr1_3:70304211-70304230 | Msa0137670:CDS | 30.0% | |
| TTAATTAGTCAGTTTCTCAG+CGG | + | chr1_3:70304321-70304340 | Msa0137670:three_prime_UTR | 30.0% | |
| TTTCAGTATTGCTCTTTCAA+GGG | - | chr1_3:70304480-70304499 | None:intergenic | 30.0% | |
| ATTTCAGTATTGCTCTTTCA+AGG | - | chr1_3:70304481-70304500 | None:intergenic | 30.0% | |
| ATAAAGAAAATGTCAACCGC+TGG | - | chr1_3:70301821-70301840 | None:intergenic | 35.0% | |
| AAGAAAGAGAGTGAATAGGA+AGG | - | chr1_3:70301905-70301924 | None:intergenic | 35.0% | |
| !! | TCTGTTCTTTTTCGTTGTCT+TGG | + | chr1_3:70302241-70302260 | Msa0137670:CDS | 35.0% |
| TGCTTTCAAATTCGCTGAAA+TGG | + | chr1_3:70302267-70302286 | Msa0137670:CDS | 35.0% | |
| ATGACGATGATGATATACCT+TGG | - | chr1_3:70302302-70302321 | None:intergenic | 35.0% | |
| CAACGAGTCTATCTAATCAA+AGG | + | chr1_3:70302465-70302484 | Msa0137670:intron | 35.0% | |
| ACTTTATACCCACGTATTTC+TGG | + | chr1_3:70302704-70302723 | Msa0137670:intron | 35.0% | |
| TAGATAGACCAGAAATACGT+GGG | - | chr1_3:70302715-70302734 | None:intergenic | 35.0% | |
| AGATGTAATTGACCATGATG+TGG | + | chr1_3:70302897-70302916 | Msa0137670:CDS | 35.0% | |
| ! | TCGAACAACTTTTGTCAACT+AGG | + | chr1_3:70303004-70303023 | Msa0137670:CDS | 35.0% |
| !!! | TTGAGAATCCCTTTGTTTTG+GGG | + | chr1_3:70303062-70303081 | Msa0137670:intron | 35.0% |
| TGACAGGAAAGTAAACAACA+TGG | - | chr1_3:70303183-70303202 | None:intergenic | 35.0% | |
| GTTTACTTTCCTGTCAAATG+TGG | + | chr1_3:70303187-70303206 | Msa0137670:intron | 35.0% | |
| ! | ACAAAAAGTTGGTCTCTTGT+TGG | - | chr1_3:70303381-70303400 | None:intergenic | 35.0% |
| TTTGTCTCTAAATGTGTGTG+AGG | + | chr1_3:70303493-70303512 | Msa0137670:intron | 35.0% | |
| AGTAACATAAGACACACTTG+AGG | - | chr1_3:70303563-70303582 | None:intergenic | 35.0% | |
| GTGTCTTATGTTTGTCAGTT+TGG | - | chr1_3:70303597-70303616 | None:intergenic | 35.0% | |
| GAAAAACAGATTCCGTATAG+TGG | + | chr1_3:70303768-70303787 | Msa0137670:intron | 35.0% | |
| AGGATGACATCTTACAAGAA+GGG | - | chr1_3:70303894-70303913 | None:intergenic | 35.0% | |
| TAGGATGACATCTTACAAGA+AGG | - | chr1_3:70303895-70303914 | None:intergenic | 35.0% | |
| CTCGAAATATTTCATTGGAC+TGG | + | chr1_3:70304216-70304235 | Msa0137670:CDS | 35.0% | |
| ! | TTTGTTGTAGTCGATCTGTT+CGG | + | chr1_3:70304297-70304316 | Msa0137670:three_prime_UTR | 35.0% |
| TATGAATACGGGTGTGTATG+AGG | - | chr1_3:70301864-70301883 | None:intergenic | 40.0% | |
| TCATACACACCCGTATTCAT+AGG | + | chr1_3:70301863-70301882 | Msa0137670:five_prime_UTR | 40.0% | |
| CATACACACCCGTATTCATA+GGG | + | chr1_3:70301864-70301883 | Msa0137670:five_prime_UTR | 40.0% | |
| AGGAAGGTTCCCTATGAATA+CGG | - | chr1_3:70301876-70301895 | None:intergenic | 40.0% | |
| AGAGAGTGAATAGGAAGGAA+GGG | - | chr1_3:70301900-70301919 | None:intergenic | 40.0% | |
| AAGAGAGTGAATAGGAAGGA+AGG | - | chr1_3:70301901-70301920 | None:intergenic | 40.0% | |
| GGAGTCTTACGATGAAATGT+CGG | - | chr1_3:70301987-70302006 | None:intergenic | 40.0% | |
| AGGATACGCAATCGCTAAAT+CGG | - | chr1_3:70302104-70302123 | None:intergenic | 40.0% | |
| CTTTGTGGAAAGATCCTCAA+AGG | - | chr1_3:70302146-70302165 | None:intergenic | 40.0% | |
| ! | CTTTGAGGATCTTTCCACAA+AGG | + | chr1_3:70302144-70302163 | Msa0137670:CDS | 40.0% |
| GATCTTTCCACAAAGGTTCA+GGG | + | chr1_3:70302151-70302170 | Msa0137670:CDS | 40.0% | |
| AAGGTTCAGGGAATCAAGAA+CGG | + | chr1_3:70302163-70302182 | Msa0137670:CDS | 40.0% | |
| TAAGCGAATATGTTGAGTGG+AGG | - | chr1_3:70302191-70302210 | None:intergenic | 40.0% | |
| GTCTAAGCGAATATGTTGAG+TGG | - | chr1_3:70302194-70302213 | None:intergenic | 40.0% | |
| TGAAATGGAATACGTTGCCA+AGG | + | chr1_3:70302282-70302301 | Msa0137670:CDS | 40.0% | |
| CTAGATAGACCAGAAATACG+TGG | - | chr1_3:70302716-70302735 | None:intergenic | 40.0% | |
| ! | AGATGTTTTCACTGTGTCAC+GGG | - | chr1_3:70302923-70302942 | None:intergenic | 40.0% |
| ! | CAGATGTTTTCACTGTGTCA+CGG | - | chr1_3:70302924-70302943 | None:intergenic | 40.0% |
| !!! | TGAGAATCCCTTTGTTTTGG+GGG | + | chr1_3:70303063-70303082 | Msa0137670:intron | 40.0% |
| AACCTCAATCCTAACATGTG+AGG | + | chr1_3:70303856-70303875 | Msa0137670:intron | 40.0% | |
| TCTTACAAGAAGGGTCATCT+AGG | - | chr1_3:70303885-70303904 | None:intergenic | 40.0% | |
| GAAAGGGTTATTCGCATGTT+AGG | - | chr1_3:70303914-70303933 | None:intergenic | 40.0% | |
| TGTTATTGCAGAGCAATCAG+CGG | + | chr1_3:70304124-70304143 | Msa0137670:intron | 40.0% | |
| GTATTCTATAACTGGACGTG+AGG | - | chr1_3:70304177-70304196 | None:intergenic | 40.0% | |
| GCATTGTACTGCTATACCAA+TGG | - | chr1_3:70304270-70304289 | None:intergenic | 40.0% | |
| AGCGGCTATTTGGAGATTTA+GGG | + | chr1_3:70304339-70304358 | Msa0137670:three_prime_UTR | 40.0% | |
| GGAAGGTTCCCTATGAATAC+GGG | - | chr1_3:70301875-70301894 | None:intergenic | 45.0% | |
| AATAGGAAGGAAGGGAAGGA+AGG | - | chr1_3:70301892-70301911 | None:intergenic | 45.0% | |
| AGTGAATAGGAAGGAAGGGA+AGG | - | chr1_3:70301896-70301915 | None:intergenic | 45.0% | |
| GGAAAGATCCTCAAAGGCTT+CGG | - | chr1_3:70302140-70302159 | None:intergenic | 45.0% | |
| GGATCTTTCCACAAAGGTTC+AGG | + | chr1_3:70302150-70302169 | Msa0137670:CDS | 45.0% | |
| CTTGATTCCCTGAACCTTTG+TGG | - | chr1_3:70302161-70302180 | None:intergenic | 45.0% | |
| ! | CTTCACATTGAAGGTGTGTC+CGG | + | chr1_3:70302545-70302564 | Msa0137670:intron | 45.0% |
| ! | ATTGGTGTCTTGTCAGACAC+CGG | - | chr1_3:70302571-70302590 | None:intergenic | 45.0% |
| !! | GCTGGTTGTTTTCTCGCTTT+TGG | + | chr1_3:70302667-70302686 | Msa0137670:intron | 45.0% |
| GATTGGTATGCTCAGCTACA+TGG | + | chr1_3:70302838-70302857 | Msa0137670:intron | 45.0% | |
| CGTGACACAGTGAAAACATC+TGG | + | chr1_3:70302922-70302941 | Msa0137670:CDS | 45.0% | |
| !!! | GAGAATCCCTTTGTTTTGGG+GGG | + | chr1_3:70303064-70303083 | Msa0137670:intron | 45.0% |
| !!! | AGAATCCCTTTGTTTTGGGG+GGG | + | chr1_3:70303065-70303084 | Msa0137670:intron | 45.0% |
| TTTGTGCACCGTATCACTCA+TGG | + | chr1_3:70303316-70303335 | Msa0137670:CDS | 45.0% | |
| TTGTGCACCGTATCACTCAT+GGG | + | chr1_3:70303317-70303336 | Msa0137670:CDS | 45.0% | |
| ! | TCCACGAATGTGTCTTTTGC+TGG | - | chr1_3:70303675-70303694 | None:intergenic | 45.0% |
| TGCCTCACATGTTAGGATTG+AGG | - | chr1_3:70303861-70303880 | None:intergenic | 45.0% | |
| TCTAGGTTGCCTCACATGTT+AGG | - | chr1_3:70303868-70303887 | None:intergenic | 45.0% | |
| ATAAGGCTTCTCGGCTAAGT+TGG | - | chr1_3:70303958-70303977 | None:intergenic | 45.0% | |
| TCAGTTTCTCAGCGGCTATT+TGG | + | chr1_3:70304329-70304348 | Msa0137670:three_prime_UTR | 45.0% | |
| CAGCGGCTATTTGGAGATTT+AGG | + | chr1_3:70304338-70304357 | Msa0137670:three_prime_UTR | 45.0% | |
| GCTTCGGCAATGGAAGAAAG+AGG | - | chr1_3:70302124-70302143 | None:intergenic | 50.0% | |
| TTCCATTGCCGAAGCCTTTG+AGG | + | chr1_3:70302129-70302148 | Msa0137670:CDS | 50.0% | |
| ATCCTCAAAGGCTTCGGCAA+TGG | - | chr1_3:70302134-70302153 | None:intergenic | 50.0% | |
| GTATGCTCAGCTACATGGAC+TGG | + | chr1_3:70302843-70302862 | Msa0137670:intron | 50.0% | |
| TAATCTACGCAGAGTTCGCC+AGG | + | chr1_3:70302957-70302976 | Msa0137670:CDS | 50.0% | |
| AATCTACGCAGAGTTCGCCA+GGG | + | chr1_3:70302958-70302977 | Msa0137670:CDS | 50.0% | |
| CTCTAACGAGATCAAGACCC+TGG | - | chr1_3:70302978-70302997 | None:intergenic | 50.0% | |
| GAAGTGGCGTCAACAGCTTA+TGG | + | chr1_3:70303288-70303307 | Msa0137670:CDS | 50.0% | |
| TGTGCACCGTATCACTCATG+GGG | + | chr1_3:70303318-70303337 | Msa0137670:CDS | 50.0% | |
| CTGACTCCCCATGAGTGATA+CGG | - | chr1_3:70303327-70303346 | None:intergenic | 50.0% | |
| TCACTCATGGGGAGTCAGAA+CGG | + | chr1_3:70303329-70303348 | Msa0137670:CDS | 50.0% | |
| GCCAGCAAAAGACACATTCG+TGG | + | chr1_3:70303671-70303690 | Msa0137670:intron | 50.0% | |
| CAGCGGAGAAGAAGATGAGA+AGG | + | chr1_3:70304141-70304160 | Msa0137670:CDS | 50.0% | |
| ! | ACATTGAAGGTGTGTCCGGC+CGG | + | chr1_3:70302549-70302568 | Msa0137670:intron | 55.0% |
| !! | TGCTCAGCTACATGGACTGG+TGG | + | chr1_3:70302846-70302865 | Msa0137670:intron | 55.0% |
| CCACACCCCCCCAAAACAAA+GGG | - | chr1_3:70303073-70303092 | None:intergenic | 55.0% | |
| !!! | CCTTTGTTTTGGGGGGGTGT+GGG | + | chr1_3:70303071-70303090 | Msa0137670:intron | 55.0% |
| GGCGTCAACAGCTTATGGAG+AGG | + | chr1_3:70303293-70303312 | Msa0137670:CDS | 55.0% | |
| GTCAGAACGGCTGTGTATGC+TGG | + | chr1_3:70303342-70303361 | Msa0137670:CDS | 55.0% | |
| ! | GGACTGGTGAGTTCTAGCAG+AGG | + | chr1_3:70304232-70304251 | Msa0137670:exon | 55.0% |
| GAGGCAGTGATGTGCTCCAT+TGG | + | chr1_3:70304251-70304270 | Msa0137670:three_prime_UTR | 55.0% | |
| GTGTCTTGTCAGACACCGGC+CGG | - | chr1_3:70302567-70302586 | None:intergenic | 60.0% | |
| CTGTGTCACGGGCCACATCA+TGG | - | chr1_3:70302912-70302931 | None:intergenic | 60.0% | |
| !!! | CCCTTTGTTTTGGGGGGGTG+TGG | + | chr1_3:70303070-70303089 | Msa0137670:intron | 60.0% |
| CCCACACCCCCCCAAAACAA+AGG | - | chr1_3:70303074-70303093 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 70301800 | 70304504 | 70301800 | ID=Msa0137670;Name=Msa0137670 |
| chr1_3 | mRNA | 70301800 | 70304504 | 70301800 | ID=Msa0137670-mRNA-1;Parent=Msa0137670;Name=Msa0137670-mRNA-1;_AED=0.02;_eAED=0.02;_QI=282|1|1|1|1|1|4|263|215 |
| chr1_3 | exon | 70301800 | 70302303 | 70301800 | ID=Msa0137670-mRNA-1:exon:24328;Parent=Msa0137670-mRNA-1 |
| chr1_3 | exon | 70302853 | 70303025 | 70302853 | ID=Msa0137670-mRNA-1:exon:24329;Parent=Msa0137670-mRNA-1 |
| chr1_3 | exon | 70303272 | 70303417 | 70303272 | ID=Msa0137670-mRNA-1:exon:24330;Parent=Msa0137670-mRNA-1 |
| chr1_3 | exon | 70304135 | 70304504 | 70304135 | ID=Msa0137670-mRNA-1:exon:24331;Parent=Msa0137670-mRNA-1 |
| chr1_3 | five_prime_UTR | 70301800 | 70302081 | 70301800 | ID=Msa0137670-mRNA-1:five_prime_utr;Parent=Msa0137670-mRNA-1 |
| chr1_3 | CDS | 70302082 | 70302303 | 70302082 | ID=Msa0137670-mRNA-1:cds;Parent=Msa0137670-mRNA-1 |
| chr1_3 | CDS | 70302853 | 70303025 | 70302853 | ID=Msa0137670-mRNA-1:cds;Parent=Msa0137670-mRNA-1 |
| chr1_3 | CDS | 70303272 | 70303417 | 70303272 | ID=Msa0137670-mRNA-1:cds;Parent=Msa0137670-mRNA-1 |
| chr1_3 | CDS | 70304135 | 70304241 | 70304135 | ID=Msa0137670-mRNA-1:cds;Parent=Msa0137670-mRNA-1 |
| chr1_3 | three_prime_UTR | 70304242 | 70304504 | 70304242 | ID=Msa0137670-mRNA-1:three_prime_utr;Parent=Msa0137670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
