Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045260 | sp|O49696|ALMTC_ARATH | 54.991 | 531 | 201 | 6 | 25 | 525 | 27 | 549 | 0.0 | 578 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0045260 | Msa0115690 | 0.932894 | 4.285891e-95 | -8.615850e-47 |
| Msa0045260 | Msa1416200 | 0.943533 | 1.013261e-102 | -8.615850e-47 |
| Msa0045260 | Msa1441690 | 0.943862 | 5.588437e-103 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045260 | MtrunA17_Chr1g0212201 | 96.852 | 540 | 13 | 2 | 1 | 540 | 1 | 536 | 0.0 | 1079 |
| Msa0045260 | MtrunA17_Chr1g0212251 | 83.457 | 538 | 81 | 6 | 5 | 540 | 1 | 532 | 0.0 | 915 |
| Msa0045260 | MtrunA17_Chr1g0212291 | 82.309 | 537 | 86 | 4 | 7 | 539 | 4 | 535 | 0.0 | 889 |
| Msa0045260 | MtrunA17_Chr4g0054741 | 58.487 | 542 | 207 | 6 | 1 | 540 | 9 | 534 | 0.0 | 604 |
| Msa0045260 | MtrunA17_Chr5g0400471 | 56.900 | 471 | 168 | 6 | 97 | 540 | 3 | 465 | 4.37e-170 | 489 |
| Msa0045260 | MtrunA17_Chr4g0054771 | 56.750 | 400 | 155 | 4 | 143 | 540 | 3 | 386 | 1.99e-152 | 441 |
| Msa0045260 | MtrunA17_Chr1g0188871 | 41.406 | 384 | 214 | 4 | 16 | 398 | 25 | 398 | 1.75e-100 | 311 |
| Msa0045260 | MtrunA17_Chr1g0188881 | 41.644 | 365 | 199 | 5 | 20 | 381 | 35 | 388 | 9.80e-97 | 302 |
| Msa0045260 | MtrunA17_Chr4g0025591 | 43.155 | 336 | 181 | 2 | 26 | 354 | 19 | 351 | 7.28e-90 | 284 |
| Msa0045260 | MtrunA17_Chr7g0267471 | 43.567 | 342 | 187 | 2 | 41 | 381 | 42 | 378 | 1.51e-85 | 273 |
| Msa0045260 | MtrunA17_Chr2g0321971 | 38.418 | 354 | 210 | 2 | 5 | 355 | 1 | 349 | 2.10e-82 | 264 |
| Msa0045260 | MtrunA17_Chr7g0259731 | 38.854 | 314 | 182 | 4 | 46 | 355 | 61 | 368 | 6.93e-76 | 246 |
| Msa0045260 | MtrunA17_Chr8g0390931 | 31.377 | 494 | 304 | 10 | 41 | 508 | 59 | 543 | 1.31e-73 | 244 |
| Msa0045260 | MtrunA17_Chr1g0210101 | 31.772 | 491 | 297 | 11 | 38 | 508 | 110 | 582 | 1.34e-71 | 239 |
| Msa0045260 | MtrunA17_Chr2g0321961 | 38.123 | 341 | 198 | 3 | 25 | 355 | 11 | 348 | 1.55e-71 | 235 |
| Msa0045260 | MtrunA17_Chr6g0484691 | 31.670 | 521 | 311 | 13 | 21 | 508 | 68 | 576 | 7.66e-71 | 238 |
| Msa0045260 | MtrunA17_Chr8g0390921 | 31.774 | 513 | 314 | 13 | 27 | 508 | 46 | 553 | 4.69e-68 | 229 |
| Msa0045260 | MtrunA17_Chr8g0390901 | 28.864 | 440 | 282 | 8 | 96 | 508 | 10 | 445 | 9.16e-55 | 191 |
| Msa0045260 | MtrunA17_Chr4g0054761 | 55.944 | 143 | 63 | 0 | 1 | 143 | 9 | 151 | 4.90e-36 | 132 |
| Msa0045260 | MtrunA17_Chr5g0400481 | 49.020 | 102 | 50 | 2 | 1 | 100 | 15 | 116 | 6.97e-28 | 107 |
| Msa0045260 | MtrunA17_Chr1g0209601 | 70.833 | 48 | 13 | 1 | 15 | 62 | 6 | 52 | 4.01e-15 | 69.7 |
| Msa0045260 | MtrunA17_Chr8g0390911 | 43.662 | 71 | 39 | 1 | 27 | 96 | 50 | 120 | 2.01e-14 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045260 | AT4G17970.1 | 54.991 | 531 | 201 | 6 | 25 | 525 | 27 | 549 | 0.0 | 578 |
| Msa0045260 | AT5G46610.1 | 53.761 | 545 | 211 | 8 | 3 | 525 | 10 | 535 | 0.0 | 562 |
| Msa0045260 | AT5G46600.1 | 52.662 | 526 | 223 | 8 | 1 | 509 | 10 | 526 | 0.0 | 531 |
| Msa0045260 | AT5G46610.2 | 50.275 | 545 | 206 | 9 | 3 | 525 | 10 | 511 | 8.31e-178 | 511 |
| Msa0045260 | AT5G46610.3 | 47.523 | 545 | 198 | 9 | 3 | 525 | 10 | 488 | 4.61e-161 | 468 |
| Msa0045260 | AT4G00910.1 | 31.992 | 497 | 269 | 7 | 24 | 515 | 45 | 477 | 1.90e-95 | 299 |
| Msa0045260 | AT1G08440.1 | 42.368 | 321 | 185 | 0 | 35 | 355 | 7 | 327 | 9.41e-83 | 266 |
| Msa0045260 | AT3G11680.1 | 40.278 | 360 | 202 | 3 | 37 | 396 | 32 | 378 | 1.09e-76 | 250 |
| Msa0045260 | AT3G11680.2 | 40.278 | 360 | 202 | 3 | 37 | 396 | 34 | 380 | 1.12e-76 | 250 |
| Msa0045260 | AT3G18440.1 | 31.765 | 510 | 299 | 12 | 35 | 508 | 73 | 569 | 1.92e-76 | 253 |
| Msa0045260 | AT1G08430.1 | 40.432 | 324 | 190 | 1 | 35 | 355 | 7 | 330 | 1.43e-75 | 248 |
| Msa0045260 | AT2G27240.2 | 39.776 | 357 | 199 | 4 | 35 | 386 | 7 | 352 | 7.54e-75 | 245 |
| Msa0045260 | AT2G27240.1 | 37.831 | 378 | 203 | 4 | 35 | 386 | 7 | 378 | 6.54e-73 | 241 |
| Msa0045260 | AT1G18420.1 | 29.323 | 532 | 330 | 12 | 13 | 508 | 56 | 577 | 4.83e-71 | 238 |
| Msa0045260 | AT1G18420.2 | 29.821 | 503 | 308 | 11 | 42 | 508 | 1 | 494 | 5.00e-70 | 233 |
| Msa0045260 | AT1G68600.1 | 30.769 | 533 | 320 | 16 | 5 | 511 | 23 | 532 | 1.67e-68 | 230 |
| Msa0045260 | AT2G17470.1 | 30.943 | 488 | 308 | 11 | 41 | 508 | 31 | 509 | 2.98e-67 | 227 |
| Msa0045260 | AT2G17470.2 | 30.943 | 488 | 308 | 11 | 41 | 508 | 53 | 531 | 4.78e-67 | 227 |
| Msa0045260 | AT1G25480.1 | 30.174 | 517 | 319 | 14 | 15 | 508 | 44 | 541 | 1.08e-66 | 226 |
| Msa0045260 | AT4G17585.1 | 61.429 | 70 | 22 | 2 | 25 | 93 | 27 | 92 | 7.62e-22 | 92.4 |
Find 105 sgRNAs with CRISPR-Local
Find 320 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTGGTGAGGAGGGAAATT+TGG | 0.194186 | 1_1:+77116155 | Msa0045260:CDS |
| TTCGATTTACTTCCAATTAC+TGG | 0.207825 | 1_1:-77118175 | None:intergenic |
| GATAATGACTTGCCTTCTTA+TGG | 0.225915 | 1_1:+77118472 | Msa0045260:CDS |
| CAATCCTCTGTTTAGTCCTT+TGG | 0.226640 | 1_1:-77116468 | None:intergenic |
| TGTATCTTTGTTGTATCTAA+TGG | 0.228111 | 1_1:+77116243 | Msa0045260:CDS |
| GGCCTCGTAGCACTTGTAAA+TGG | 0.244757 | 1_1:-77117222 | None:intergenic |
| GATTGTTGTTCCCCAGTAAT+TGG | 0.275194 | 1_1:+77118163 | Msa0045260:CDS |
| AAGAAGTATCAAAAGTTCTA+AGG | 0.276507 | 1_1:+77117900 | Msa0045260:CDS |
| GTTGGCTAAGCCTTCAAGTT+TGG | 0.288017 | 1_1:-77116973 | None:intergenic |
| AGGTCTTCCCCTGACCAATT+TGG | 0.290568 | 1_1:-77116933 | None:intergenic |
| GTCTATTTGTATTTCCAAAT+TGG | 0.292616 | 1_1:+77116919 | Msa0045260:CDS |
| CGATACAATTATCAAATTAA+AGG | 0.294901 | 1_1:-77116811 | None:intergenic |
| TGAGCATTTCTTAGTATTGT+TGG | 0.297879 | 1_1:-77116080 | None:intergenic |
| GTCATAATTCTTCTTGATAT+AGG | 0.301733 | 1_1:-77116763 | None:intergenic |
| AGTTGCTTTAGTTGATGTTT+TGG | 0.316900 | 1_1:-77118080 | None:intergenic |
| TCATAATTCTTCTTGATATA+GGG | 0.317116 | 1_1:-77116762 | None:intergenic |
| ATGTTTGCAGTCAGAAATTC+AGG | 0.318176 | 1_1:+77117523 | Msa0045260:CDS |
| TATGGATAAAGTTGAAGAAT+TGG | 0.322871 | 1_1:+77118360 | Msa0045260:CDS |
| AGAGAATGGAGTATCCTTCT+TGG | 0.331437 | 1_1:-77116196 | None:intergenic |
| CTACGACAGTGTAACTAAAA+TGG | 0.337816 | 1_1:-77117490 | None:intergenic |
| TAAGCCTTCAAGTTTGGATA+TGG | 0.348181 | 1_1:-77116967 | None:intergenic |
| GATAAAGTGAAAAGATTTCC+AGG | 0.365738 | 1_1:+77116133 | Msa0045260:CDS |
| CTAAGAAATGCTCAAGTCAT+TGG | 0.367385 | 1_1:+77116089 | Msa0045260:CDS |
| ATCGCTCGAAATATTTGATC+AGG | 0.377745 | 1_1:-77116545 | None:intergenic |
| ATGGATAAAGTTGAAGAATT+GGG | 0.381672 | 1_1:+77118361 | Msa0045260:CDS |
| TTTGTATTTCCAAATTGGTC+AGG | 0.383204 | 1_1:+77116924 | Msa0045260:CDS |
| TGGCAGCATCTTGAGTATCT+TGG | 0.404533 | 1_1:-77117422 | None:intergenic |
| AGGAGGGAAATTTGGAAAGT+TGG | 0.407214 | 1_1:+77116163 | Msa0045260:CDS |
| CACTTCCATGCTAGTGGAGA+TGG | 0.408461 | 1_1:+77118318 | Msa0045260:CDS |
| ATCAAGAAGAATTATGACTA+TGG | 0.415116 | 1_1:+77116768 | Msa0045260:CDS |
| AGTGAAAAGATTTCCAGGTT+TGG | 0.418187 | 1_1:+77116138 | Msa0045260:CDS |
| ACAGGCATTGCAAGCAAGTT+GGG | 0.420671 | 1_1:+77117397 | Msa0045260:intron |
| GCCTCGTAGCACTTGTAAAT+GGG | 0.427131 | 1_1:-77117221 | None:intergenic |
| GAATTATGACTATGGTGTTA+TGG | 0.427501 | 1_1:+77116776 | Msa0045260:CDS |
| ATTTCCCTCCTCACCAAACC+TGG | 0.429641 | 1_1:-77116151 | None:intergenic |
| ATTGCTGCCATGGGATTCTC+TGG | 0.433448 | 1_1:-77117442 | None:intergenic |
| AACTTCGTTAGCAGGATTGT+TGG | 0.434227 | 1_1:+77116493 | Msa0045260:CDS |
| CATGACTGTGGTTGTGGTCA+TGG | 0.437773 | 1_1:+77116309 | Msa0045260:CDS |
| TTTAGGCATGGAAGTTTCAA+TGG | 0.439300 | 1_1:+77116051 | None:intergenic |
| GGCTGTCATGACTGTGGTTG+TGG | 0.441242 | 1_1:+77116303 | Msa0045260:CDS |
| GGATTGGGAACTTCGTTAGC+AGG | 0.446695 | 1_1:+77116485 | Msa0045260:CDS |
| CTTAGCTTTAGAATCTAAAA+CGG | 0.446937 | 1_1:-77117243 | None:intergenic |
| TAATGGAGCCATTGTTCAAA+GGG | 0.447359 | 1_1:+77116260 | Msa0045260:CDS |
| CAAAGGACTAAACAGAGGAT+TGG | 0.451197 | 1_1:+77116469 | Msa0045260:CDS |
| GGCTTAGCCAACTCTGTAGA+AGG | 0.451778 | 1_1:+77116984 | Msa0045260:CDS |
| TCCACCATATCCAAACTTGA+AGG | 0.459404 | 1_1:+77116963 | Msa0045260:CDS |
| GCCTTCAAGTTTGGATATGG+TGG | 0.460456 | 1_1:-77116964 | None:intergenic |
| ATCAAAAGTTCTAAGGGTAA+TGG | 0.464081 | 1_1:+77117907 | Msa0045260:CDS |
| GGCAAAACTAGATCATGTTA+TGG | 0.464191 | 1_1:+77118342 | Msa0045260:CDS |
| TCGATTTACTTCCAATTACT+GGG | 0.468998 | 1_1:-77118174 | None:intergenic |
| CAAGACCAACTTTCAGAGAA+TGG | 0.469576 | 1_1:-77116210 | None:intergenic |
| TGGATATGGTGGATTTATGA+AGG | 0.471579 | 1_1:-77116953 | None:intergenic |
| GGGTAATGGCCAACAGCATA+AGG | 0.474387 | 1_1:+77117921 | Msa0045260:CDS |
| AAAGGACTAAACAGAGGATT+GGG | 0.474990 | 1_1:+77116470 | Msa0045260:CDS |
| TGCTTTCACTTCCATGCTAG+TGG | 0.483281 | 1_1:+77118312 | Msa0045260:CDS |
| AACAGGCATTGCAAGCAAGT+TGG | 0.483716 | 1_1:+77117396 | Msa0045260:intron |
| CACATTACCTTCTACAGAGT+TGG | 0.494928 | 1_1:-77116991 | None:intergenic |
| AATTATTCTGCTCCATAAGA+AGG | 0.495731 | 1_1:-77118484 | None:intergenic |
| CAACTGCACATAATGACAAC+AGG | 0.496230 | 1_1:+77118098 | Msa0045260:CDS |
| GATTTCCAGGTTTGGTGAGG+AGG | 0.505112 | 1_1:+77116146 | Msa0045260:CDS |
| ATACTCCATTCTCTGAAAGT+TGG | 0.519791 | 1_1:+77116205 | Msa0045260:CDS |
| GATCCTATCCCTTTGAACAA+TGG | 0.522592 | 1_1:-77116268 | None:intergenic |
| TTGTATTTCCAAATTGGTCA+GGG | 0.524590 | 1_1:+77116925 | Msa0045260:CDS |
| AGAAGGACAACGACAGAAGA+AGG | 0.527566 | 1_1:+77118222 | Msa0045260:CDS |
| ATTTCCAGGTTTGGTGAGGA+GGG | 0.533036 | 1_1:+77116147 | Msa0045260:CDS |
| AGAAGTATCAAAAGTTCTAA+GGG | 0.545176 | 1_1:+77117901 | Msa0045260:CDS |
| TACACTGTCGTAGCACTACA+TGG | 0.546505 | 1_1:+77117500 | Msa0045260:CDS |
| GATTGTTTGAGAGTGTTTGA+AGG | 0.549129 | 1_1:-77117961 | None:intergenic |
| TATAGATCACGGATTGACCT+TGG | 0.551863 | 1_1:-77117851 | None:intergenic |
| ATGGAAGTGAAAGCAGCAAA+GGG | 0.553411 | 1_1:-77118304 | None:intergenic |
| CTAATGGAGCCATTGTTCAA+AGG | 0.553954 | 1_1:+77116259 | Msa0045260:CDS |
| GCGATTTCAATGCATTGTCA+AGG | 0.563036 | 1_1:-77118003 | None:intergenic |
| CACTTTAGAGAGTTCAGAGA+TGG | 0.567128 | 1_1:+77118394 | Msa0045260:CDS |
| GTAGTGCTTCTGAGAACTCA+AGG | 0.568913 | 1_1:-77118282 | None:intergenic |
| CTTGAGCCTAGTAAAAGTTG+TGG | 0.570351 | 1_1:-77118028 | None:intergenic |
| TGCCACCATCTCCACTAGCA+TGG | 0.571399 | 1_1:-77118323 | None:intergenic |
| CATGGAAGTGAAAGCAGCAA+AGG | 0.571864 | 1_1:-77118305 | None:intergenic |
| TGGCAGCAATATGCAAAAGT+AGG | 0.572216 | 1_1:+77117455 | Msa0045260:CDS |
| AAGAATCTTTGTATAGATCA+CGG | 0.572772 | 1_1:-77117862 | None:intergenic |
| GATAGGATCAAATGCTATGT+GGG | 0.574841 | 1_1:+77116282 | Msa0045260:CDS |
| TCCCGAGAACAAATAAAAGA+AGG | 0.576657 | 1_1:+77118205 | Msa0045260:CDS |
| TAAAGCTAAGGATGAAACAC+TGG | 0.580961 | 1_1:+77117256 | Msa0045260:CDS |
| GAGCCATTGTTCAAAGGGAT+AGG | 0.581364 | 1_1:+77116265 | Msa0045260:CDS |
| TCTACTATATGCATCGGCGT+TGG | 0.581570 | 1_1:+77116879 | Msa0045260:CDS |
| GGATAGGATCAAATGCTATG+TGG | 0.592083 | 1_1:+77116281 | Msa0045260:CDS |
| ATTGTTTGAGAGTGTTTGAA+GGG | 0.593546 | 1_1:-77117960 | None:intergenic |
| TAATGATGCAGCTACTGTTG+TGG | 0.595562 | 1_1:+77117145 | Msa0045260:intron |
| AAAGATTTCCAGGTTTGGTG+AGG | 0.606745 | 1_1:+77116143 | Msa0045260:CDS |
| TGTTGATAATGTCTTGAAGA+TGG | 0.607522 | 1_1:+77116842 | Msa0045260:CDS |
| GTGGTCATGGAGTTCACTGT+AGG | 0.611601 | 1_1:+77116322 | Msa0045260:CDS |
| TTCCATGCTAGTGGAGATGG+TGG | 0.616449 | 1_1:+77118321 | Msa0045260:CDS |
| CGATTTACTTCCAATTACTG+GGG | 0.623538 | 1_1:-77118173 | None:intergenic |
| TCGCTCGAAATATTTGATCA+GGG | 0.624217 | 1_1:-77116544 | None:intergenic |
| TTGGCAAAGATGATCCAAGA+AGG | 0.626674 | 1_1:+77116182 | Msa0045260:CDS |
| CGTATCTCTACTATATGCAT+CGG | 0.629374 | 1_1:+77116873 | Msa0045260:CDS |
| AAATGAAGATGATTCATCAG+AGG | 0.647988 | 1_1:+77117196 | Msa0045260:CDS |
| TGTATTTCCAAATTGGTCAG+GGG | 0.650407 | 1_1:+77116926 | Msa0045260:CDS |
| GCAGGAGGGACTTTATCCAA+AGG | 0.661845 | 1_1:+77116452 | Msa0045260:intron |
| TTATCCAAAGGACTAAACAG+AGG | 0.684276 | 1_1:+77116464 | Msa0045260:CDS |
| CGACAGTGTAACTAAAATGG+CGG | 0.692887 | 1_1:-77117487 | None:intergenic |
| CATTGTTGTTGAAGACACCA+AGG | 0.696785 | 1_1:+77117834 | Msa0045260:intron |
| GATGCTGCCAGAGAATCCCA+TGG | 0.698745 | 1_1:+77117435 | Msa0045260:CDS |
| TATGTGGGCTGTCATGACTG+TGG | 0.700236 | 1_1:+77116297 | Msa0045260:CDS |
| TCCCATTTACAAGTGCTACG+AGG | 0.725963 | 1_1:+77117220 | Msa0045260:CDS |
| TCTTCAAGACATTATCAACA+CGG | 0.726201 | 1_1:-77116839 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACTATTTTAAAAAATAGAA+GGG | - | chr1_1:77117328-77117347 | None:intergenic | 10.0% |
| !!! | ATACTATTTTAAAAAATAGA+AGG | - | chr1_1:77117329-77117348 | None:intergenic | 10.0% |
| !!! | TACTATTTTAAAAAATAGAA+GGG | - | chr1_1:77117328-77117347 | None:intergenic | 10.0% |
| !!! | ATACTATTTTAAAAAATAGA+AGG | - | chr1_1:77117329-77117348 | None:intergenic | 10.0% |
| !!! | AATAGTCTACATTATTTTAT+TGG | + | chr1_1:77117713-77117732 | Msa0045260:intron | 15.0% |
| !!! | AGAGTTATATTTTATACTAA+AGG | - | chr1_1:77117766-77117785 | None:intergenic | 15.0% |
| !!! | TTATCAACTATATTGATTTT+CGG | - | chr1_1:77118457-77118476 | None:intergenic | 15.0% |
| !!! | AATAGTCTACATTATTTTAT+TGG | + | chr1_1:77117713-77117732 | Msa0045260:intron | 15.0% |
| !!! | AGAGTTATATTTTATACTAA+AGG | - | chr1_1:77117766-77117785 | None:intergenic | 15.0% |
| !!! | TTATCAACTATATTGATTTT+CGG | - | chr1_1:77118457-77118476 | None:intergenic | 15.0% |
| !! | TCATAATTCTTCTTGATATA+GGG | - | chr1_1:77116765-77116784 | None:intergenic | 20.0% |
| !! | CGATACAATTATCAAATTAA+AGG | - | chr1_1:77116814-77116833 | None:intergenic | 20.0% |
| !! | TACTTTACTTGACAAAAAAA+GGG | - | chr1_1:77117293-77117312 | None:intergenic | 20.0% |
| !! | TTAAATAGTACGTAAGTTAA+AGG | - | chr1_1:77117812-77117831 | None:intergenic | 20.0% |
| !!! | ATGATAATTTTACTAAGTTG+TGG | - | chr1_1:77118256-77118275 | None:intergenic | 20.0% |
| !! | TCATAATTCTTCTTGATATA+GGG | - | chr1_1:77116765-77116784 | None:intergenic | 20.0% |
| !! | CGATACAATTATCAAATTAA+AGG | - | chr1_1:77116814-77116833 | None:intergenic | 20.0% |
| !! | TACTTTACTTGACAAAAAAA+GGG | - | chr1_1:77117293-77117312 | None:intergenic | 20.0% |
| !! | TTAAATAGTACGTAAGTTAA+AGG | - | chr1_1:77117812-77117831 | None:intergenic | 20.0% |
| !!! | ATGATAATTTTACTAAGTTG+TGG | - | chr1_1:77118256-77118275 | None:intergenic | 20.0% |
| !! | TGTATCTTTGTTGTATCTAA+TGG | + | chr1_1:77116243-77116262 | Msa0045260:CDS | 25.0% |
| ! | TGTTTATATCACAATCTCAT+AGG | + | chr1_1:77116408-77116427 | Msa0045260:intron | 25.0% |
| !! | TTTAAGAGAAGCTTAATTTG+TGG | + | chr1_1:77116671-77116690 | Msa0045260:intron | 25.0% |
| ! | CAAACAGTGAAACAATATTT+AGG | - | chr1_1:77116706-77116725 | None:intergenic | 25.0% |
| ! | GTCATAATTCTTCTTGATAT+AGG | - | chr1_1:77116766-77116785 | None:intergenic | 25.0% |
| ! | ATCAAGAAGAATTATGACTA+TGG | + | chr1_1:77116768-77116787 | Msa0045260:CDS | 25.0% |
| ! | GTCTATTTGTATTTCCAAAT+TGG | + | chr1_1:77116919-77116938 | Msa0045260:CDS | 25.0% |
| ! | AGCAATATTCTTTAATGAAG+TGG | - | chr1_1:77117025-77117044 | None:intergenic | 25.0% |
| !!! | CTTAGCTTTAGAATCTAAAA+CGG | - | chr1_1:77117246-77117265 | None:intergenic | 25.0% |
| ! | ACTTTACTTGACAAAAAAAG+GGG | - | chr1_1:77117292-77117311 | None:intergenic | 25.0% |
| ! | GTACTTTACTTGACAAAAAA+AGG | - | chr1_1:77117294-77117313 | None:intergenic | 25.0% |
| ! | AATAACATGACAGATAATCT+AGG | - | chr1_1:77117583-77117602 | None:intergenic | 25.0% |
| ! | ATTGATTAAGATCTATATGC+AGG | + | chr1_1:77117640-77117659 | Msa0045260:intron | 25.0% |
| ! | AAGAATCTTTGTATAGATCA+CGG | - | chr1_1:77117865-77117884 | None:intergenic | 25.0% |
| !!! | AAGAAGTATCAAAAGTTCTA+AGG | + | chr1_1:77117900-77117919 | Msa0045260:CDS | 25.0% |
| !!! | AGAAGTATCAAAAGTTCTAA+GGG | + | chr1_1:77117901-77117920 | Msa0045260:CDS | 25.0% |
| ! | TATGGATAAAGTTGAAGAAT+TGG | + | chr1_1:77118360-77118379 | Msa0045260:CDS | 25.0% |
| ! | ATGGATAAAGTTGAAGAATT+GGG | + | chr1_1:77118361-77118380 | Msa0045260:CDS | 25.0% |
| !! | TGTATCTTTGTTGTATCTAA+TGG | + | chr1_1:77116243-77116262 | Msa0045260:CDS | 25.0% |
| ! | TGTTTATATCACAATCTCAT+AGG | + | chr1_1:77116408-77116427 | Msa0045260:intron | 25.0% |
| !! | TTTAAGAGAAGCTTAATTTG+TGG | + | chr1_1:77116671-77116690 | Msa0045260:intron | 25.0% |
| ! | CAAACAGTGAAACAATATTT+AGG | - | chr1_1:77116706-77116725 | None:intergenic | 25.0% |
| ! | GTCATAATTCTTCTTGATAT+AGG | - | chr1_1:77116766-77116785 | None:intergenic | 25.0% |
| ! | ATCAAGAAGAATTATGACTA+TGG | + | chr1_1:77116768-77116787 | Msa0045260:CDS | 25.0% |
| ! | GTCTATTTGTATTTCCAAAT+TGG | + | chr1_1:77116919-77116938 | Msa0045260:CDS | 25.0% |
| ! | AGCAATATTCTTTAATGAAG+TGG | - | chr1_1:77117025-77117044 | None:intergenic | 25.0% |
| !!! | CTTAGCTTTAGAATCTAAAA+CGG | - | chr1_1:77117246-77117265 | None:intergenic | 25.0% |
| ! | ACTTTACTTGACAAAAAAAG+GGG | - | chr1_1:77117292-77117311 | None:intergenic | 25.0% |
| ! | GTACTTTACTTGACAAAAAA+AGG | - | chr1_1:77117294-77117313 | None:intergenic | 25.0% |
| ! | AATAACATGACAGATAATCT+AGG | - | chr1_1:77117583-77117602 | None:intergenic | 25.0% |
| ! | ATTGATTAAGATCTATATGC+AGG | + | chr1_1:77117640-77117659 | Msa0045260:intron | 25.0% |
| ! | AAGAATCTTTGTATAGATCA+CGG | - | chr1_1:77117865-77117884 | None:intergenic | 25.0% |
| !!! | AAGAAGTATCAAAAGTTCTA+AGG | + | chr1_1:77117900-77117919 | Msa0045260:CDS | 25.0% |
| !!! | AGAAGTATCAAAAGTTCTAA+GGG | + | chr1_1:77117901-77117920 | Msa0045260:CDS | 25.0% |
| ! | TATGGATAAAGTTGAAGAAT+TGG | + | chr1_1:77118360-77118379 | Msa0045260:CDS | 25.0% |
| ! | ATGGATAAAGTTGAAGAATT+GGG | + | chr1_1:77118361-77118380 | Msa0045260:CDS | 25.0% |
| TGAGCATTTCTTAGTATTGT+TGG | - | chr1_1:77116083-77116102 | None:intergenic | 30.0% | |
| GATAAAGTGAAAAGATTTCC+AGG | + | chr1_1:77116133-77116152 | Msa0045260:CDS | 30.0% | |
| TCACAATCTCATAGGTATTA+AGG | + | chr1_1:77116416-77116435 | Msa0045260:intron | 30.0% | |
| ! | ATATTTCGAGCGATTTTCAT+TGG | + | chr1_1:77116554-77116573 | Msa0045260:CDS | 30.0% |
| GGTAAGCATTTATTACATCA+TGG | + | chr1_1:77116596-77116615 | Msa0045260:intron | 30.0% | |
| ! | GAATTATGACTATGGTGTTA+TGG | + | chr1_1:77116776-77116795 | Msa0045260:CDS | 30.0% |
| TCTTCAAGACATTATCAACA+CGG | - | chr1_1:77116842-77116861 | None:intergenic | 30.0% | |
| !! | TGTTGATAATGTCTTGAAGA+TGG | + | chr1_1:77116842-77116861 | Msa0045260:CDS | 30.0% |
| TTTGTATTTCCAAATTGGTC+AGG | + | chr1_1:77116924-77116943 | Msa0045260:CDS | 30.0% | |
| TTGTATTTCCAAATTGGTCA+GGG | + | chr1_1:77116925-77116944 | Msa0045260:CDS | 30.0% | |
| GTCTCAATCTATATAAGTGA+TGG | + | chr1_1:77117116-77117135 | Msa0045260:intron | 30.0% | |
| AAATGAAGATGATTCATCAG+AGG | + | chr1_1:77117196-77117215 | Msa0045260:CDS | 30.0% | |
| !!! | CGTTTTAGATTCTAAAGCTA+AGG | + | chr1_1:77117244-77117263 | Msa0045260:CDS | 30.0% |
| TTTGTCAAGTAAAGTACACT+AGG | + | chr1_1:77117297-77117316 | Msa0045260:intron | 30.0% | |
| ! | CTTACAGTGTTGAATTAAAC+AGG | + | chr1_1:77117379-77117398 | Msa0045260:intron | 30.0% |
| TACTAAATCAGCTATCGATA+AGG | + | chr1_1:77117546-77117565 | Msa0045260:intron | 30.0% | |
| ! | GTCATGTTATTGATAGTACA+TGG | + | chr1_1:77117592-77117611 | Msa0045260:intron | 30.0% |
| GCTAGCATCTTCATAATTAT+TGG | + | chr1_1:77117735-77117754 | Msa0045260:intron | 30.0% | |
| !! | ATCAAAAGTTCTAAGGGTAA+TGG | + | chr1_1:77117907-77117926 | Msa0045260:CDS | 30.0% |
| !! | ATTGTTTGAGAGTGTTTGAA+GGG | - | chr1_1:77117963-77117982 | None:intergenic | 30.0% |
| !! | TTGCTTTAGTTGATGTTTTG+GGG | - | chr1_1:77118081-77118100 | None:intergenic | 30.0% |
| !! | GTTGCTTTAGTTGATGTTTT+GGG | - | chr1_1:77118082-77118101 | None:intergenic | 30.0% |
| !! | AGTTGCTTTAGTTGATGTTT+TGG | - | chr1_1:77118083-77118102 | None:intergenic | 30.0% |
| TCGATTTACTTCCAATTACT+GGG | - | chr1_1:77118177-77118196 | None:intergenic | 30.0% | |
| TTCGATTTACTTCCAATTAC+TGG | - | chr1_1:77118178-77118197 | None:intergenic | 30.0% | |
| !! | TCCTTCTTTTATTTGTTCTC+GGG | - | chr1_1:77118209-77118228 | None:intergenic | 30.0% |
| !! | GTCCTTCTTTTATTTGTTCT+CGG | - | chr1_1:77118210-77118229 | None:intergenic | 30.0% |
| TGAGCATTTCTTAGTATTGT+TGG | - | chr1_1:77116083-77116102 | None:intergenic | 30.0% | |
| GATAAAGTGAAAAGATTTCC+AGG | + | chr1_1:77116133-77116152 | Msa0045260:CDS | 30.0% | |
| TCACAATCTCATAGGTATTA+AGG | + | chr1_1:77116416-77116435 | Msa0045260:intron | 30.0% | |
| ! | ATATTTCGAGCGATTTTCAT+TGG | + | chr1_1:77116554-77116573 | Msa0045260:CDS | 30.0% |
| GGTAAGCATTTATTACATCA+TGG | + | chr1_1:77116596-77116615 | Msa0045260:intron | 30.0% | |
| ! | GAATTATGACTATGGTGTTA+TGG | + | chr1_1:77116776-77116795 | Msa0045260:CDS | 30.0% |
| TCTTCAAGACATTATCAACA+CGG | - | chr1_1:77116842-77116861 | None:intergenic | 30.0% | |
| !! | TGTTGATAATGTCTTGAAGA+TGG | + | chr1_1:77116842-77116861 | Msa0045260:CDS | 30.0% |
| TTTGTATTTCCAAATTGGTC+AGG | + | chr1_1:77116924-77116943 | Msa0045260:CDS | 30.0% | |
| TTGTATTTCCAAATTGGTCA+GGG | + | chr1_1:77116925-77116944 | Msa0045260:CDS | 30.0% | |
| GTCTCAATCTATATAAGTGA+TGG | + | chr1_1:77117116-77117135 | Msa0045260:intron | 30.0% | |
| AAATGAAGATGATTCATCAG+AGG | + | chr1_1:77117196-77117215 | Msa0045260:CDS | 30.0% | |
| !!! | CGTTTTAGATTCTAAAGCTA+AGG | + | chr1_1:77117244-77117263 | Msa0045260:CDS | 30.0% |
| TTTGTCAAGTAAAGTACACT+AGG | + | chr1_1:77117297-77117316 | Msa0045260:intron | 30.0% | |
| ! | CTTACAGTGTTGAATTAAAC+AGG | + | chr1_1:77117379-77117398 | Msa0045260:intron | 30.0% |
| TACTAAATCAGCTATCGATA+AGG | + | chr1_1:77117546-77117565 | Msa0045260:intron | 30.0% | |
| ! | GTCATGTTATTGATAGTACA+TGG | + | chr1_1:77117592-77117611 | Msa0045260:intron | 30.0% |
| GCTAGCATCTTCATAATTAT+TGG | + | chr1_1:77117735-77117754 | Msa0045260:intron | 30.0% | |
| !! | ATCAAAAGTTCTAAGGGTAA+TGG | + | chr1_1:77117907-77117926 | Msa0045260:CDS | 30.0% |
| !! | ATTGTTTGAGAGTGTTTGAA+GGG | - | chr1_1:77117963-77117982 | None:intergenic | 30.0% |
| !! | TTGCTTTAGTTGATGTTTTG+GGG | - | chr1_1:77118081-77118100 | None:intergenic | 30.0% |
| !! | GTTGCTTTAGTTGATGTTTT+GGG | - | chr1_1:77118082-77118101 | None:intergenic | 30.0% |
| !! | AGTTGCTTTAGTTGATGTTT+TGG | - | chr1_1:77118083-77118102 | None:intergenic | 30.0% |
| TCGATTTACTTCCAATTACT+GGG | - | chr1_1:77118177-77118196 | None:intergenic | 30.0% | |
| TTCGATTTACTTCCAATTAC+TGG | - | chr1_1:77118178-77118197 | None:intergenic | 30.0% | |
| !! | TCCTTCTTTTATTTGTTCTC+GGG | - | chr1_1:77118209-77118228 | None:intergenic | 30.0% |
| !! | GTCCTTCTTTTATTTGTTCT+CGG | - | chr1_1:77118210-77118229 | None:intergenic | 30.0% |
| CTAAGAAATGCTCAAGTCAT+TGG | + | chr1_1:77116089-77116108 | Msa0045260:CDS | 35.0% | |
| AGTGAAAAGATTTCCAGGTT+TGG | + | chr1_1:77116138-77116157 | Msa0045260:CDS | 35.0% | |
| ! | ATACTCCATTCTCTGAAAGT+TGG | + | chr1_1:77116205-77116224 | Msa0045260:CDS | 35.0% |
| TAATGGAGCCATTGTTCAAA+GGG | + | chr1_1:77116260-77116279 | Msa0045260:CDS | 35.0% | |
| GATAGGATCAAATGCTATGT+GGG | + | chr1_1:77116282-77116301 | Msa0045260:CDS | 35.0% | |
| TAAGGATCAGTTATGATTGC+AGG | + | chr1_1:77116434-77116453 | Msa0045260:intron | 35.0% | |
| TTATCCAAAGGACTAAACAG+AGG | + | chr1_1:77116464-77116483 | Msa0045260:CDS | 35.0% | |
| AAAGGACTAAACAGAGGATT+GGG | + | chr1_1:77116470-77116489 | Msa0045260:CDS | 35.0% | |
| TCGCTCGAAATATTTGATCA+GGG | - | chr1_1:77116547-77116566 | None:intergenic | 35.0% | |
| ATCGCTCGAAATATTTGATC+AGG | - | chr1_1:77116548-77116567 | None:intergenic | 35.0% | |
| CTTACCTAAAAGAAAAACCG+CGG | - | chr1_1:77116582-77116601 | None:intergenic | 35.0% | |
| TTGTTTCACTGTTTGTTTGC+AGG | + | chr1_1:77116711-77116730 | Msa0045260:intron | 35.0% | |
| CGTATCTCTACTATATGCAT+CGG | + | chr1_1:77116873-77116892 | Msa0045260:CDS | 35.0% | |
| TGTATTTCCAAATTGGTCAG+GGG | + | chr1_1:77116926-77116945 | Msa0045260:CDS | 35.0% | |
| !! | TGGATATGGTGGATTTATGA+AGG | - | chr1_1:77116956-77116975 | None:intergenic | 35.0% |
| ! | TAAGCCTTCAAGTTTGGATA+TGG | - | chr1_1:77116970-77116989 | None:intergenic | 35.0% |
| TAAAGCTAAGGATGAAACAC+TGG | + | chr1_1:77117256-77117275 | Msa0045260:CDS | 35.0% | |
| CTACGACAGTGTAACTAAAA+TGG | - | chr1_1:77117493-77117512 | None:intergenic | 35.0% | |
| ATGTTTGCAGTCAGAAATTC+AGG | + | chr1_1:77117523-77117542 | Msa0045260:CDS | 35.0% | |
| CAGGCTTATAATGATTGTCA+GGG | + | chr1_1:77117659-77117678 | Msa0045260:intron | 35.0% | |
| ! | TTGGTGTCTTCAACAACAAT+GGG | - | chr1_1:77117835-77117854 | None:intergenic | 35.0% |
| !!! | ATGCTTTTTCCTTATGCTGT+TGG | - | chr1_1:77117933-77117952 | None:intergenic | 35.0% |
| !! | GATTGTTTGAGAGTGTTTGA+AGG | - | chr1_1:77117964-77117983 | None:intergenic | 35.0% |
| !! | TGCTTTAGTTGATGTTTTGG+GGG | - | chr1_1:77118080-77118099 | None:intergenic | 35.0% |
| CGATTTACTTCCAATTACTG+GGG | - | chr1_1:77118176-77118195 | None:intergenic | 35.0% | |
| TCCCGAGAACAAATAAAAGA+AGG | + | chr1_1:77118205-77118224 | Msa0045260:CDS | 35.0% | |
| GGCAAAACTAGATCATGTTA+TGG | + | chr1_1:77118342-77118361 | Msa0045260:CDS | 35.0% | |
| ! | GATAATGACTTGCCTTCTTA+TGG | + | chr1_1:77118472-77118491 | Msa0045260:CDS | 35.0% |
| CTAAGAAATGCTCAAGTCAT+TGG | + | chr1_1:77116089-77116108 | Msa0045260:CDS | 35.0% | |
| AGTGAAAAGATTTCCAGGTT+TGG | + | chr1_1:77116138-77116157 | Msa0045260:CDS | 35.0% | |
| ! | ATACTCCATTCTCTGAAAGT+TGG | + | chr1_1:77116205-77116224 | Msa0045260:CDS | 35.0% |
| TAATGGAGCCATTGTTCAAA+GGG | + | chr1_1:77116260-77116279 | Msa0045260:CDS | 35.0% | |
| GATAGGATCAAATGCTATGT+GGG | + | chr1_1:77116282-77116301 | Msa0045260:CDS | 35.0% | |
| TAAGGATCAGTTATGATTGC+AGG | + | chr1_1:77116434-77116453 | Msa0045260:intron | 35.0% | |
| TTATCCAAAGGACTAAACAG+AGG | + | chr1_1:77116464-77116483 | Msa0045260:CDS | 35.0% | |
| AAAGGACTAAACAGAGGATT+GGG | + | chr1_1:77116470-77116489 | Msa0045260:CDS | 35.0% | |
| TCGCTCGAAATATTTGATCA+GGG | - | chr1_1:77116547-77116566 | None:intergenic | 35.0% | |
| ATCGCTCGAAATATTTGATC+AGG | - | chr1_1:77116548-77116567 | None:intergenic | 35.0% | |
| CTTACCTAAAAGAAAAACCG+CGG | - | chr1_1:77116582-77116601 | None:intergenic | 35.0% | |
| TTGTTTCACTGTTTGTTTGC+AGG | + | chr1_1:77116711-77116730 | Msa0045260:intron | 35.0% | |
| CGTATCTCTACTATATGCAT+CGG | + | chr1_1:77116873-77116892 | Msa0045260:CDS | 35.0% | |
| TGTATTTCCAAATTGGTCAG+GGG | + | chr1_1:77116926-77116945 | Msa0045260:CDS | 35.0% | |
| !! | TGGATATGGTGGATTTATGA+AGG | - | chr1_1:77116956-77116975 | None:intergenic | 35.0% |
| ! | TAAGCCTTCAAGTTTGGATA+TGG | - | chr1_1:77116970-77116989 | None:intergenic | 35.0% |
| TAAAGCTAAGGATGAAACAC+TGG | + | chr1_1:77117256-77117275 | Msa0045260:CDS | 35.0% | |
| CTACGACAGTGTAACTAAAA+TGG | - | chr1_1:77117493-77117512 | None:intergenic | 35.0% | |
| ATGTTTGCAGTCAGAAATTC+AGG | + | chr1_1:77117523-77117542 | Msa0045260:CDS | 35.0% | |
| CAGGCTTATAATGATTGTCA+GGG | + | chr1_1:77117659-77117678 | Msa0045260:intron | 35.0% | |
| ! | TTGGTGTCTTCAACAACAAT+GGG | - | chr1_1:77117835-77117854 | None:intergenic | 35.0% |
| !!! | ATGCTTTTTCCTTATGCTGT+TGG | - | chr1_1:77117933-77117952 | None:intergenic | 35.0% |
| !! | GATTGTTTGAGAGTGTTTGA+AGG | - | chr1_1:77117964-77117983 | None:intergenic | 35.0% |
| !! | TGCTTTAGTTGATGTTTTGG+GGG | - | chr1_1:77118080-77118099 | None:intergenic | 35.0% |
| CGATTTACTTCCAATTACTG+GGG | - | chr1_1:77118176-77118195 | None:intergenic | 35.0% | |
| TCCCGAGAACAAATAAAAGA+AGG | + | chr1_1:77118205-77118224 | Msa0045260:CDS | 35.0% | |
| GGCAAAACTAGATCATGTTA+TGG | + | chr1_1:77118342-77118361 | Msa0045260:CDS | 35.0% | |
| ! | GATAATGACTTGCCTTCTTA+TGG | + | chr1_1:77118472-77118491 | Msa0045260:CDS | 35.0% |
| !! | AAAGATTTCCAGGTTTGGTG+AGG | + | chr1_1:77116143-77116162 | Msa0045260:CDS | 40.0% |
| AGGAGGGAAATTTGGAAAGT+TGG | + | chr1_1:77116163-77116182 | Msa0045260:CDS | 40.0% | |
| TTGGCAAAGATGATCCAAGA+AGG | + | chr1_1:77116182-77116201 | Msa0045260:CDS | 40.0% | |
| ! | AGAGAATGGAGTATCCTTCT+TGG | - | chr1_1:77116199-77116218 | None:intergenic | 40.0% |
| CAAGACCAACTTTCAGAGAA+TGG | - | chr1_1:77116213-77116232 | None:intergenic | 40.0% | |
| CTAATGGAGCCATTGTTCAA+AGG | + | chr1_1:77116259-77116278 | Msa0045260:CDS | 40.0% | |
| GATCCTATCCCTTTGAACAA+TGG | - | chr1_1:77116271-77116290 | None:intergenic | 40.0% | |
| GGATAGGATCAAATGCTATG+TGG | + | chr1_1:77116281-77116300 | Msa0045260:CDS | 40.0% | |
| GATCAGTTATGATTGCAGGA+GGG | + | chr1_1:77116438-77116457 | Msa0045260:intron | 40.0% | |
| CAATCCTCTGTTTAGTCCTT+TGG | - | chr1_1:77116471-77116490 | None:intergenic | 40.0% | |
| CAAAGGACTAAACAGAGGAT+TGG | + | chr1_1:77116469-77116488 | Msa0045260:CDS | 40.0% | |
| AACTTCGTTAGCAGGATTGT+TGG | + | chr1_1:77116493-77116512 | Msa0045260:CDS | 40.0% | |
| !! | AGAGAAGCTTAATTTGTGGC+TGG | + | chr1_1:77116675-77116694 | Msa0045260:intron | 40.0% |
| TCCACCATATCCAAACTTGA+AGG | + | chr1_1:77116963-77116982 | Msa0045260:CDS | 40.0% | |
| CACATTACCTTCTACAGAGT+TGG | - | chr1_1:77116994-77117013 | None:intergenic | 40.0% | |
| TCTTTAATGAAGTGGTGACC+TGG | - | chr1_1:77117017-77117036 | None:intergenic | 40.0% | |
| TAATGATGCAGCTACTGTTG+TGG | + | chr1_1:77117145-77117164 | Msa0045260:intron | 40.0% | |
| ACTTGACAAAAAAAGGGGCA+TGG | - | chr1_1:77117287-77117306 | None:intergenic | 40.0% | |
| ! | CTTTTGCATATTGCTGCCAT+GGG | - | chr1_1:77117454-77117473 | None:intergenic | 40.0% |
| ! | ACTTTTGCATATTGCTGCCA+TGG | - | chr1_1:77117455-77117474 | None:intergenic | 40.0% |
| TGGCAGCAATATGCAAAAGT+AGG | + | chr1_1:77117455-77117474 | Msa0045260:CDS | 40.0% | |
| CGACAGTGTAACTAAAATGG+CGG | - | chr1_1:77117490-77117509 | None:intergenic | 40.0% | |
| GCAGGCTTATAATGATTGTC+AGG | + | chr1_1:77117658-77117677 | Msa0045260:intron | 40.0% | |
| !! | CTTGGTGTCTTCAACAACAA+TGG | - | chr1_1:77117836-77117855 | None:intergenic | 40.0% |
| ! | CATTGTTGTTGAAGACACCA+AGG | + | chr1_1:77117834-77117853 | Msa0045260:intron | 40.0% |
| ! | TATAGATCACGGATTGACCT+TGG | - | chr1_1:77117854-77117873 | None:intergenic | 40.0% |
| GCGATTTCAATGCATTGTCA+AGG | - | chr1_1:77118006-77118025 | None:intergenic | 40.0% | |
| ! | TCGCAACCACAACTTTTACT+AGG | + | chr1_1:77118022-77118041 | Msa0045260:CDS | 40.0% |
| CTTGAGCCTAGTAAAAGTTG+TGG | - | chr1_1:77118031-77118050 | None:intergenic | 40.0% | |
| ! | CACAACTTTTACTAGGCTCA+AGG | + | chr1_1:77118029-77118048 | Msa0045260:CDS | 40.0% |
| !!! | TTGATGTTTTGGGGGTTATG+GGG | - | chr1_1:77118072-77118091 | None:intergenic | 40.0% |
| !!! | GTTGATGTTTTGGGGGTTAT+GGG | - | chr1_1:77118073-77118092 | None:intergenic | 40.0% |
| !!! | AGTTGATGTTTTGGGGGTTA+TGG | - | chr1_1:77118074-77118093 | None:intergenic | 40.0% |
| CAACTGCACATAATGACAAC+AGG | + | chr1_1:77118098-77118117 | Msa0045260:CDS | 40.0% | |
| ! | GATTGTTGTTCCCCAGTAAT+TGG | + | chr1_1:77118163-77118182 | Msa0045260:CDS | 40.0% |
| ! | AACGACAGAAGAAGGTTTTG+AGG | + | chr1_1:77118230-77118249 | Msa0045260:CDS | 40.0% |
| ATGGAAGTGAAAGCAGCAAA+GGG | - | chr1_1:77118307-77118326 | None:intergenic | 40.0% | |
| ! | CACTTTAGAGAGTTCAGAGA+TGG | + | chr1_1:77118394-77118413 | Msa0045260:CDS | 40.0% |
| !! | AAAGATTTCCAGGTTTGGTG+AGG | + | chr1_1:77116143-77116162 | Msa0045260:CDS | 40.0% |
| AGGAGGGAAATTTGGAAAGT+TGG | + | chr1_1:77116163-77116182 | Msa0045260:CDS | 40.0% | |
| TTGGCAAAGATGATCCAAGA+AGG | + | chr1_1:77116182-77116201 | Msa0045260:CDS | 40.0% | |
| ! | AGAGAATGGAGTATCCTTCT+TGG | - | chr1_1:77116199-77116218 | None:intergenic | 40.0% |
| CAAGACCAACTTTCAGAGAA+TGG | - | chr1_1:77116213-77116232 | None:intergenic | 40.0% | |
| CTAATGGAGCCATTGTTCAA+AGG | + | chr1_1:77116259-77116278 | Msa0045260:CDS | 40.0% | |
| GATCCTATCCCTTTGAACAA+TGG | - | chr1_1:77116271-77116290 | None:intergenic | 40.0% | |
| GGATAGGATCAAATGCTATG+TGG | + | chr1_1:77116281-77116300 | Msa0045260:CDS | 40.0% | |
| GATCAGTTATGATTGCAGGA+GGG | + | chr1_1:77116438-77116457 | Msa0045260:intron | 40.0% | |
| CAATCCTCTGTTTAGTCCTT+TGG | - | chr1_1:77116471-77116490 | None:intergenic | 40.0% | |
| CAAAGGACTAAACAGAGGAT+TGG | + | chr1_1:77116469-77116488 | Msa0045260:CDS | 40.0% | |
| AACTTCGTTAGCAGGATTGT+TGG | + | chr1_1:77116493-77116512 | Msa0045260:CDS | 40.0% | |
| !! | AGAGAAGCTTAATTTGTGGC+TGG | + | chr1_1:77116675-77116694 | Msa0045260:intron | 40.0% |
| TCCACCATATCCAAACTTGA+AGG | + | chr1_1:77116963-77116982 | Msa0045260:CDS | 40.0% | |
| CACATTACCTTCTACAGAGT+TGG | - | chr1_1:77116994-77117013 | None:intergenic | 40.0% | |
| TCTTTAATGAAGTGGTGACC+TGG | - | chr1_1:77117017-77117036 | None:intergenic | 40.0% | |
| TAATGATGCAGCTACTGTTG+TGG | + | chr1_1:77117145-77117164 | Msa0045260:intron | 40.0% | |
| ACTTGACAAAAAAAGGGGCA+TGG | - | chr1_1:77117287-77117306 | None:intergenic | 40.0% | |
| ! | CTTTTGCATATTGCTGCCAT+GGG | - | chr1_1:77117454-77117473 | None:intergenic | 40.0% |
| ! | ACTTTTGCATATTGCTGCCA+TGG | - | chr1_1:77117455-77117474 | None:intergenic | 40.0% |
| TGGCAGCAATATGCAAAAGT+AGG | + | chr1_1:77117455-77117474 | Msa0045260:CDS | 40.0% | |
| CGACAGTGTAACTAAAATGG+CGG | - | chr1_1:77117490-77117509 | None:intergenic | 40.0% | |
| GCAGGCTTATAATGATTGTC+AGG | + | chr1_1:77117658-77117677 | Msa0045260:intron | 40.0% | |
| !! | CTTGGTGTCTTCAACAACAA+TGG | - | chr1_1:77117836-77117855 | None:intergenic | 40.0% |
| ! | CATTGTTGTTGAAGACACCA+AGG | + | chr1_1:77117834-77117853 | Msa0045260:intron | 40.0% |
| ! | TATAGATCACGGATTGACCT+TGG | - | chr1_1:77117854-77117873 | None:intergenic | 40.0% |
| GCGATTTCAATGCATTGTCA+AGG | - | chr1_1:77118006-77118025 | None:intergenic | 40.0% | |
| ! | TCGCAACCACAACTTTTACT+AGG | + | chr1_1:77118022-77118041 | Msa0045260:CDS | 40.0% |
| CTTGAGCCTAGTAAAAGTTG+TGG | - | chr1_1:77118031-77118050 | None:intergenic | 40.0% | |
| ! | CACAACTTTTACTAGGCTCA+AGG | + | chr1_1:77118029-77118048 | Msa0045260:CDS | 40.0% |
| !!! | TTGATGTTTTGGGGGTTATG+GGG | - | chr1_1:77118072-77118091 | None:intergenic | 40.0% |
| !!! | GTTGATGTTTTGGGGGTTAT+GGG | - | chr1_1:77118073-77118092 | None:intergenic | 40.0% |
| !!! | AGTTGATGTTTTGGGGGTTA+TGG | - | chr1_1:77118074-77118093 | None:intergenic | 40.0% |
| CAACTGCACATAATGACAAC+AGG | + | chr1_1:77118098-77118117 | Msa0045260:CDS | 40.0% | |
| ! | GATTGTTGTTCCCCAGTAAT+TGG | + | chr1_1:77118163-77118182 | Msa0045260:CDS | 40.0% |
| ! | AACGACAGAAGAAGGTTTTG+AGG | + | chr1_1:77118230-77118249 | Msa0045260:CDS | 40.0% |
| ATGGAAGTGAAAGCAGCAAA+GGG | - | chr1_1:77118307-77118326 | None:intergenic | 40.0% | |
| ! | CACTTTAGAGAGTTCAGAGA+TGG | + | chr1_1:77118394-77118413 | Msa0045260:CDS | 40.0% |
| !! | ATTTCCAGGTTTGGTGAGGA+GGG | + | chr1_1:77116147-77116166 | Msa0045260:CDS | 45.0% |
| ! | GTTTGGTGAGGAGGGAAATT+TGG | + | chr1_1:77116155-77116174 | Msa0045260:CDS | 45.0% |
| GAGCCATTGTTCAAAGGGAT+AGG | + | chr1_1:77116265-77116284 | Msa0045260:CDS | 45.0% | |
| GGAGTTCACTGTAGGTAAAC+AGG | + | chr1_1:77116330-77116349 | Msa0045260:intron | 45.0% | |
| GGATCAGTTATGATTGCAGG+AGG | + | chr1_1:77116437-77116456 | Msa0045260:intron | 45.0% | |
| ! | TCTACTATATGCATCGGCGT+TGG | + | chr1_1:77116879-77116898 | Msa0045260:CDS | 45.0% |
| ! | GCCTTCAAGTTTGGATATGG+TGG | - | chr1_1:77116967-77116986 | None:intergenic | 45.0% |
| ! | GTTGGCTAAGCCTTCAAGTT+TGG | - | chr1_1:77116976-77116995 | None:intergenic | 45.0% |
| TCTGTAGAAGGTAATGTGCC+AGG | + | chr1_1:77116996-77117015 | Msa0045260:intron | 45.0% | |
| TCCCATTTACAAGTGCTACG+AGG | + | chr1_1:77117220-77117239 | Msa0045260:CDS | 45.0% | |
| GCCTCGTAGCACTTGTAAAT+GGG | - | chr1_1:77117224-77117243 | None:intergenic | 45.0% | |
| ! | AACAGGCATTGCAAGCAAGT+TGG | + | chr1_1:77117396-77117415 | Msa0045260:intron | 45.0% |
| ! | ACAGGCATTGCAAGCAAGTT+GGG | + | chr1_1:77117397-77117416 | Msa0045260:intron | 45.0% |
| TGGCAGCATCTTGAGTATCT+TGG | - | chr1_1:77117425-77117444 | None:intergenic | 45.0% | |
| TACACTGTCGTAGCACTACA+TGG | + | chr1_1:77117500-77117519 | Msa0045260:CDS | 45.0% | |
| !!! | TGATGTTTTGGGGGTTATGG+GGG | - | chr1_1:77118071-77118090 | None:intergenic | 45.0% |
| AGAAGGACAACGACAGAAGA+AGG | + | chr1_1:77118222-77118241 | Msa0045260:CDS | 45.0% | |
| ! | GTAGTGCTTCTGAGAACTCA+AGG | - | chr1_1:77118285-77118304 | None:intergenic | 45.0% |
| CATGGAAGTGAAAGCAGCAA+AGG | - | chr1_1:77118308-77118327 | None:intergenic | 45.0% | |
| TGCTTTCACTTCCATGCTAG+TGG | + | chr1_1:77118312-77118331 | Msa0045260:CDS | 45.0% | |
| !! | ATTTCCAGGTTTGGTGAGGA+GGG | + | chr1_1:77116147-77116166 | Msa0045260:CDS | 45.0% |
| ! | GTTTGGTGAGGAGGGAAATT+TGG | + | chr1_1:77116155-77116174 | Msa0045260:CDS | 45.0% |
| GAGCCATTGTTCAAAGGGAT+AGG | + | chr1_1:77116265-77116284 | Msa0045260:CDS | 45.0% | |
| GGAGTTCACTGTAGGTAAAC+AGG | + | chr1_1:77116330-77116349 | Msa0045260:intron | 45.0% | |
| GGATCAGTTATGATTGCAGG+AGG | + | chr1_1:77116437-77116456 | Msa0045260:intron | 45.0% | |
| ! | TCTACTATATGCATCGGCGT+TGG | + | chr1_1:77116879-77116898 | Msa0045260:CDS | 45.0% |
| ! | GCCTTCAAGTTTGGATATGG+TGG | - | chr1_1:77116967-77116986 | None:intergenic | 45.0% |
| ! | GTTGGCTAAGCCTTCAAGTT+TGG | - | chr1_1:77116976-77116995 | None:intergenic | 45.0% |
| TCTGTAGAAGGTAATGTGCC+AGG | + | chr1_1:77116996-77117015 | Msa0045260:intron | 45.0% | |
| TCCCATTTACAAGTGCTACG+AGG | + | chr1_1:77117220-77117239 | Msa0045260:CDS | 45.0% | |
| GCCTCGTAGCACTTGTAAAT+GGG | - | chr1_1:77117224-77117243 | None:intergenic | 45.0% | |
| ! | AACAGGCATTGCAAGCAAGT+TGG | + | chr1_1:77117396-77117415 | Msa0045260:intron | 45.0% |
| ! | ACAGGCATTGCAAGCAAGTT+GGG | + | chr1_1:77117397-77117416 | Msa0045260:intron | 45.0% |
| TGGCAGCATCTTGAGTATCT+TGG | - | chr1_1:77117425-77117444 | None:intergenic | 45.0% | |
| TACACTGTCGTAGCACTACA+TGG | + | chr1_1:77117500-77117519 | Msa0045260:CDS | 45.0% | |
| !!! | TGATGTTTTGGGGGTTATGG+GGG | - | chr1_1:77118071-77118090 | None:intergenic | 45.0% |
| AGAAGGACAACGACAGAAGA+AGG | + | chr1_1:77118222-77118241 | Msa0045260:CDS | 45.0% | |
| ! | GTAGTGCTTCTGAGAACTCA+AGG | - | chr1_1:77118285-77118304 | None:intergenic | 45.0% |
| CATGGAAGTGAAAGCAGCAA+AGG | - | chr1_1:77118308-77118327 | None:intergenic | 45.0% | |
| TGCTTTCACTTCCATGCTAG+TGG | + | chr1_1:77118312-77118331 | Msa0045260:CDS | 45.0% | |
| !! | GATTTCCAGGTTTGGTGAGG+AGG | + | chr1_1:77116146-77116165 | Msa0045260:CDS | 50.0% |
| ATTTCCCTCCTCACCAAACC+TGG | - | chr1_1:77116154-77116173 | None:intergenic | 50.0% | |
| ! | TATGTGGGCTGTCATGACTG+TGG | + | chr1_1:77116297-77116316 | Msa0045260:CDS | 50.0% |
| CATGACTGTGGTTGTGGTCA+TGG | + | chr1_1:77116309-77116328 | Msa0045260:CDS | 50.0% | |
| GTGGTCATGGAGTTCACTGT+AGG | + | chr1_1:77116322-77116341 | Msa0045260:CDS | 50.0% | |
| GCAGGAGGGACTTTATCCAA+AGG | + | chr1_1:77116452-77116471 | Msa0045260:intron | 50.0% | |
| GGATTGGGAACTTCGTTAGC+AGG | + | chr1_1:77116485-77116504 | Msa0045260:CDS | 50.0% | |
| ! | AGCGATTTTCATTGGAGCCG+CGG | + | chr1_1:77116562-77116581 | Msa0045260:CDS | 50.0% |
| ! | GGAGCCGCGGTTTTTCTTTT+AGG | + | chr1_1:77116575-77116594 | Msa0045260:CDS | 50.0% |
| AGGTCTTCCCCTGACCAATT+TGG | - | chr1_1:77116936-77116955 | None:intergenic | 50.0% | |
| GGCTTAGCCAACTCTGTAGA+AGG | + | chr1_1:77116984-77117003 | Msa0045260:CDS | 50.0% | |
| GGCCTCGTAGCACTTGTAAA+TGG | - | chr1_1:77117225-77117244 | None:intergenic | 50.0% | |
| ATTGCTGCCATGGGATTCTC+TGG | - | chr1_1:77117445-77117464 | None:intergenic | 50.0% | |
| ! | GGGTAATGGCCAACAGCATA+AGG | + | chr1_1:77117921-77117940 | Msa0045260:CDS | 50.0% |
| CACTTCCATGCTAGTGGAGA+TGG | + | chr1_1:77118318-77118337 | Msa0045260:CDS | 50.0% | |
| TTCCATGCTAGTGGAGATGG+TGG | + | chr1_1:77118321-77118340 | Msa0045260:CDS | 50.0% | |
| !! | GATTTCCAGGTTTGGTGAGG+AGG | + | chr1_1:77116146-77116165 | Msa0045260:CDS | 50.0% |
| ATTTCCCTCCTCACCAAACC+TGG | - | chr1_1:77116154-77116173 | None:intergenic | 50.0% | |
| ! | TATGTGGGCTGTCATGACTG+TGG | + | chr1_1:77116297-77116316 | Msa0045260:CDS | 50.0% |
| CATGACTGTGGTTGTGGTCA+TGG | + | chr1_1:77116309-77116328 | Msa0045260:CDS | 50.0% | |
| GTGGTCATGGAGTTCACTGT+AGG | + | chr1_1:77116322-77116341 | Msa0045260:CDS | 50.0% | |
| GCAGGAGGGACTTTATCCAA+AGG | + | chr1_1:77116452-77116471 | Msa0045260:intron | 50.0% | |
| GGATTGGGAACTTCGTTAGC+AGG | + | chr1_1:77116485-77116504 | Msa0045260:CDS | 50.0% | |
| ! | AGCGATTTTCATTGGAGCCG+CGG | + | chr1_1:77116562-77116581 | Msa0045260:CDS | 50.0% |
| ! | GGAGCCGCGGTTTTTCTTTT+AGG | + | chr1_1:77116575-77116594 | Msa0045260:CDS | 50.0% |
| AGGTCTTCCCCTGACCAATT+TGG | - | chr1_1:77116936-77116955 | None:intergenic | 50.0% | |
| GGCTTAGCCAACTCTGTAGA+AGG | + | chr1_1:77116984-77117003 | Msa0045260:CDS | 50.0% | |
| GGCCTCGTAGCACTTGTAAA+TGG | - | chr1_1:77117225-77117244 | None:intergenic | 50.0% | |
| ATTGCTGCCATGGGATTCTC+TGG | - | chr1_1:77117445-77117464 | None:intergenic | 50.0% | |
| ! | GGGTAATGGCCAACAGCATA+AGG | + | chr1_1:77117921-77117940 | Msa0045260:CDS | 50.0% |
| CACTTCCATGCTAGTGGAGA+TGG | + | chr1_1:77118318-77118337 | Msa0045260:CDS | 50.0% | |
| TTCCATGCTAGTGGAGATGG+TGG | + | chr1_1:77118321-77118340 | Msa0045260:CDS | 50.0% | |
| GGCTGTCATGACTGTGGTTG+TGG | + | chr1_1:77116303-77116322 | Msa0045260:CDS | 55.0% | |
| GATGCTGCCAGAGAATCCCA+TGG | + | chr1_1:77117435-77117454 | Msa0045260:CDS | 55.0% | |
| TGCCACCATCTCCACTAGCA+TGG | - | chr1_1:77118326-77118345 | None:intergenic | 55.0% | |
| GGCTGTCATGACTGTGGTTG+TGG | + | chr1_1:77116303-77116322 | Msa0045260:CDS | 55.0% | |
| GATGCTGCCAGAGAATCCCA+TGG | + | chr1_1:77117435-77117454 | Msa0045260:CDS | 55.0% | |
| TGCCACCATCTCCACTAGCA+TGG | - | chr1_1:77118326-77118345 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 77116058 | 77118504 | 77116058 | ID=Msa0045260;Name=Msa0045260 |
| chr1_1 | mRNA | 77116058 | 77118504 | 77116058 | ID=Msa0045260-mRNA-1;Parent=Msa0045260;Name=Msa0045260-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0|0|1|1|1|6|0|540 |
| chr1_1 | exon | 77116058 | 77116343 | 77116058 | ID=Msa0045260-mRNA-1:exon:26317;Parent=Msa0045260-mRNA-1 |
| chr1_1 | exon | 77116456 | 77116596 | 77116456 | ID=Msa0045260-mRNA-1:exon:26318;Parent=Msa0045260-mRNA-1 |
| chr1_1 | exon | 77116733 | 77117005 | 77116733 | ID=Msa0045260-mRNA-1:exon:26319;Parent=Msa0045260-mRNA-1 |
| chr1_1 | exon | 77117156 | 77117277 | 77117156 | ID=Msa0045260-mRNA-1:exon:26320;Parent=Msa0045260-mRNA-1 |
| chr1_1 | exon | 77117401 | 77117544 | 77117401 | ID=Msa0045260-mRNA-1:exon:26321;Parent=Msa0045260-mRNA-1 |
| chr1_1 | exon | 77117848 | 77118504 | 77117848 | ID=Msa0045260-mRNA-1:exon:26322;Parent=Msa0045260-mRNA-1 |
| chr1_1 | CDS | 77116058 | 77116343 | 77116058 | ID=Msa0045260-mRNA-1:cds;Parent=Msa0045260-mRNA-1 |
| chr1_1 | CDS | 77116456 | 77116596 | 77116456 | ID=Msa0045260-mRNA-1:cds;Parent=Msa0045260-mRNA-1 |
| chr1_1 | CDS | 77116733 | 77117005 | 77116733 | ID=Msa0045260-mRNA-1:cds;Parent=Msa0045260-mRNA-1 |
| chr1_1 | CDS | 77117156 | 77117277 | 77117156 | ID=Msa0045260-mRNA-1:cds;Parent=Msa0045260-mRNA-1 |
| chr1_1 | CDS | 77117401 | 77117544 | 77117401 | ID=Msa0045260-mRNA-1:cds;Parent=Msa0045260-mRNA-1 |
| chr1_1 | CDS | 77117848 | 77118504 | 77117848 | ID=Msa0045260-mRNA-1:cds;Parent=Msa0045260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
