Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1441690 | sp|O49696|ALMTC_ARATH | 55.179 | 531 | 200 | 6 | 25 | 525 | 27 | 549 | 0.0 | 579 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1441690 | A0A072VSP9 | 97.037 | 540 | 12 | 2 | 1 | 540 | 1 | 536 | 0.0 | 1080 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0045260 | Msa1441690 | 0.943862 | 5.588437e-103 | -8.615850e-47 |
| Msa0059880 | Msa1441690 | 0.814642 | 1.388296e-51 | -8.615850e-47 |
| Msa0115690 | Msa1441690 | 0.960253 | 2.387784e-118 | -8.615850e-47 |
| Msa1416200 | Msa1441690 | 0.968424 | 1.170568e-128 | -8.615850e-47 |
| Msa0985700 | Msa1441690 | 0.802796 | 4.732275e-49 | -8.615850e-47 |
| Msa1087370 | Msa1441690 | 0.800323 | 1.521279e-48 | -8.615850e-47 |
| Msa0274250 | Msa1441690 | 0.802807 | 4.707363e-49 | -8.615850e-47 |
| Msa1109890 | Msa1441690 | 0.802179 | 6.343208e-49 | -8.615850e-47 |
| Msa0883640 | Msa1441690 | 0.802137 | 6.470937e-49 | -8.615850e-47 |
| Msa0910830 | Msa1441690 | 0.815489 | 9.004791e-52 | -8.615850e-47 |
| Msa0960090 | Msa1441690 | 0.804246 | 2.368394e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1441690 | MtrunA17_Chr1g0212201 | 97.037 | 540 | 12 | 2 | 1 | 540 | 1 | 536 | 0.0 | 1080 |
| Msa1441690 | MtrunA17_Chr1g0212251 | 83.643 | 538 | 80 | 6 | 5 | 540 | 1 | 532 | 0.0 | 917 |
| Msa1441690 | MtrunA17_Chr1g0212291 | 82.495 | 537 | 85 | 4 | 7 | 539 | 4 | 535 | 0.0 | 890 |
| Msa1441690 | MtrunA17_Chr4g0054741 | 58.672 | 542 | 206 | 6 | 1 | 540 | 9 | 534 | 0.0 | 606 |
| Msa1441690 | MtrunA17_Chr5g0400471 | 57.113 | 471 | 167 | 6 | 97 | 540 | 3 | 465 | 1.85e-170 | 490 |
| Msa1441690 | MtrunA17_Chr4g0054771 | 56.750 | 400 | 155 | 4 | 143 | 540 | 3 | 386 | 3.40e-152 | 441 |
| Msa1441690 | MtrunA17_Chr1g0188871 | 41.406 | 384 | 214 | 4 | 16 | 398 | 25 | 398 | 3.71e-100 | 310 |
| Msa1441690 | MtrunA17_Chr1g0188881 | 41.918 | 365 | 198 | 5 | 20 | 381 | 35 | 388 | 3.99e-97 | 303 |
| Msa1441690 | MtrunA17_Chr4g0025591 | 43.452 | 336 | 180 | 2 | 26 | 354 | 19 | 351 | 2.84e-90 | 285 |
| Msa1441690 | MtrunA17_Chr7g0267471 | 43.860 | 342 | 186 | 2 | 41 | 381 | 42 | 378 | 6.23e-86 | 274 |
| Msa1441690 | MtrunA17_Chr2g0321971 | 38.701 | 354 | 209 | 2 | 5 | 355 | 1 | 349 | 6.86e-83 | 265 |
| Msa1441690 | MtrunA17_Chr7g0259731 | 39.172 | 314 | 181 | 4 | 46 | 355 | 61 | 368 | 2.33e-76 | 248 |
| Msa1441690 | MtrunA17_Chr8g0390931 | 31.579 | 494 | 303 | 10 | 41 | 508 | 59 | 543 | 4.51e-74 | 245 |
| Msa1441690 | MtrunA17_Chr1g0210101 | 31.976 | 491 | 296 | 11 | 38 | 508 | 110 | 582 | 6.63e-72 | 240 |
| Msa1441690 | MtrunA17_Chr2g0321961 | 38.123 | 341 | 198 | 3 | 25 | 355 | 11 | 348 | 9.43e-72 | 236 |
| Msa1441690 | MtrunA17_Chr6g0484691 | 31.862 | 521 | 310 | 13 | 21 | 508 | 68 | 576 | 2.84e-71 | 239 |
| Msa1441690 | MtrunA17_Chr8g0390921 | 31.774 | 513 | 314 | 13 | 27 | 508 | 46 | 553 | 2.38e-68 | 230 |
| Msa1441690 | MtrunA17_Chr8g0390901 | 29.091 | 440 | 281 | 8 | 96 | 508 | 10 | 445 | 3.47e-55 | 192 |
| Msa1441690 | MtrunA17_Chr4g0054761 | 55.944 | 143 | 63 | 0 | 1 | 143 | 9 | 151 | 4.90e-36 | 132 |
| Msa1441690 | MtrunA17_Chr5g0400481 | 49.020 | 102 | 50 | 2 | 1 | 100 | 15 | 116 | 6.97e-28 | 107 |
| Msa1441690 | MtrunA17_Chr1g0209601 | 70.833 | 48 | 13 | 1 | 15 | 62 | 6 | 52 | 3.93e-15 | 69.7 |
| Msa1441690 | MtrunA17_Chr8g0390911 | 43.662 | 71 | 39 | 1 | 27 | 96 | 50 | 120 | 1.97e-14 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1441690 | AT4G17970.1 | 55.179 | 531 | 200 | 6 | 25 | 525 | 27 | 549 | 0.0 | 579 |
| Msa1441690 | AT5G46610.1 | 53.761 | 545 | 211 | 8 | 3 | 525 | 10 | 535 | 0.0 | 563 |
| Msa1441690 | AT5G46600.1 | 52.652 | 528 | 220 | 9 | 1 | 509 | 10 | 526 | 0.0 | 531 |
| Msa1441690 | AT5G46610.2 | 50.275 | 545 | 206 | 9 | 3 | 525 | 10 | 511 | 5.43e-178 | 512 |
| Msa1441690 | AT5G46610.3 | 47.523 | 545 | 198 | 9 | 3 | 525 | 10 | 488 | 2.30e-161 | 468 |
| Msa1441690 | AT4G00910.1 | 32.193 | 497 | 268 | 7 | 24 | 515 | 45 | 477 | 7.17e-96 | 300 |
| Msa1441690 | AT1G08440.1 | 42.056 | 321 | 186 | 0 | 35 | 355 | 7 | 327 | 3.06e-82 | 265 |
| Msa1441690 | AT3G11680.1 | 40.556 | 360 | 201 | 3 | 37 | 396 | 32 | 378 | 4.36e-77 | 251 |
| Msa1441690 | AT3G11680.2 | 40.556 | 360 | 201 | 3 | 37 | 396 | 34 | 380 | 5.10e-77 | 251 |
| Msa1441690 | AT3G18440.1 | 31.961 | 510 | 298 | 12 | 35 | 508 | 73 | 569 | 7.48e-77 | 254 |
| Msa1441690 | AT1G08430.1 | 40.123 | 324 | 191 | 1 | 35 | 355 | 7 | 330 | 3.78e-75 | 246 |
| Msa1441690 | AT2G27240.2 | 39.496 | 357 | 200 | 4 | 35 | 386 | 7 | 352 | 2.01e-74 | 244 |
| Msa1441690 | AT2G27240.1 | 37.566 | 378 | 204 | 4 | 35 | 386 | 7 | 378 | 1.62e-72 | 240 |
| Msa1441690 | AT1G18420.1 | 29.511 | 532 | 329 | 12 | 13 | 508 | 56 | 577 | 1.44e-71 | 239 |
| Msa1441690 | AT1G18420.2 | 30.020 | 503 | 307 | 11 | 42 | 508 | 1 | 494 | 1.71e-70 | 234 |
| Msa1441690 | AT1G68600.1 | 30.957 | 533 | 319 | 16 | 5 | 511 | 23 | 532 | 5.85e-69 | 231 |
| Msa1441690 | AT2G17470.1 | 31.148 | 488 | 307 | 11 | 41 | 508 | 31 | 509 | 1.16e-67 | 228 |
| Msa1441690 | AT2G17470.2 | 31.148 | 488 | 307 | 11 | 41 | 508 | 53 | 531 | 1.99e-67 | 228 |
| Msa1441690 | AT1G25480.1 | 30.368 | 517 | 318 | 14 | 15 | 508 | 44 | 541 | 3.84e-67 | 227 |
| Msa1441690 | AT4G17585.1 | 61.429 | 70 | 22 | 2 | 25 | 93 | 27 | 92 | 7.62e-22 | 92.4 |
Find 105 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTGGTGAGGAGGGAAATT+TGG | 0.194186 | tig0029335:-15289 | Msa1441690:CDS |
| TTCGATTTACTTCCAATTAC+TGG | 0.207825 | tig0029335:+13256 | None:intergenic |
| GATAATGACTTGCCTTCTTA+TGG | 0.225915 | tig0029335:-12959 | Msa1441690:CDS |
| CAATCCTCTGTTTAGTCCTT+TGG | 0.226640 | tig0029335:+14976 | None:intergenic |
| TGTATCTTTGTTGTATCTAA+TGG | 0.228111 | tig0029335:-15201 | Msa1441690:CDS |
| GGCCTCGTAGCACTTGTAAA+TGG | 0.244757 | tig0029335:+14209 | None:intergenic |
| GATTGTTGTTCCCCAGTAAT+TGG | 0.275194 | tig0029335:-13268 | Msa1441690:CDS |
| AAGAAGTATCAAAAGTTCTA+AGG | 0.276507 | tig0029335:-13531 | Msa1441690:CDS |
| GTTGGCTAAGCCTTCAAGTT+TGG | 0.288017 | tig0029335:+14458 | None:intergenic |
| AGGTCTTCCCCTGACCAATT+TGG | 0.290568 | tig0029335:+14498 | None:intergenic |
| GTCTATTTGTATTTCCAAAT+TGG | 0.292616 | tig0029335:-14512 | Msa1441690:CDS |
| CGATACAATTATCAAATTAA+AGG | 0.294901 | tig0029335:+14620 | None:intergenic |
| TGAGCATTTCTTAGTATTGT+TGG | 0.297879 | tig0029335:+15364 | None:intergenic |
| GTCATAATTCTTCTTGATAT+AGG | 0.301733 | tig0029335:+14668 | None:intergenic |
| AGTTGCTTTAGTTGATGTTT+TGG | 0.316900 | tig0029335:+13351 | None:intergenic |
| TCATAATTCTTCTTGATATA+GGG | 0.317116 | tig0029335:+14669 | None:intergenic |
| ATGTTTGCAGTCAGAAATTC+AGG | 0.318176 | tig0029335:-13908 | Msa1441690:intron |
| TATGGATAAAGTTGAAGAAT+TGG | 0.322871 | tig0029335:-13071 | Msa1441690:CDS |
| AGAGAATGGAGTATCCTTCT+TGG | 0.331437 | tig0029335:+15248 | None:intergenic |
| CTACGACAGTGTAACTAAAA+TGG | 0.337816 | tig0029335:+13941 | None:intergenic |
| TAAGCCTTCAAGTTTGGATA+TGG | 0.348181 | tig0029335:+14464 | None:intergenic |
| GATAAAGTGAAAAGATTTCC+AGG | 0.365738 | tig0029335:-15311 | Msa1441690:CDS |
| CTAAGAAATGCTCAAGTCAT+TGG | 0.367385 | tig0029335:-15355 | Msa1441690:CDS |
| ATCGCTCGAAATATTTGATC+AGG | 0.377745 | tig0029335:+14899 | None:intergenic |
| ATGGATAAAGTTGAAGAATT+GGG | 0.381672 | tig0029335:-13070 | Msa1441690:CDS |
| TTTGTATTTCCAAATTGGTC+AGG | 0.383204 | tig0029335:-14507 | Msa1441690:CDS |
| TGGCAGCATCTTGAGTATCT+TGG | 0.404533 | tig0029335:+14009 | None:intergenic |
| AGGAGGGAAATTTGGAAAGT+TGG | 0.407214 | tig0029335:-15281 | Msa1441690:CDS |
| CACTTCCATGCTAGTGGAGA+TGG | 0.408461 | tig0029335:-13113 | Msa1441690:CDS |
| ATCAAGAAGAATTATGACTA+TGG | 0.415116 | tig0029335:-14663 | Msa1441690:CDS |
| AGTGAAAAGATTTCCAGGTT+TGG | 0.418187 | tig0029335:-15306 | Msa1441690:CDS |
| ACAGGCATTGCAAGCAAGTT+GGG | 0.420671 | tig0029335:-14034 | Msa1441690:intron |
| GCCTCGTAGCACTTGTAAAT+GGG | 0.427131 | tig0029335:+14210 | None:intergenic |
| GAATTATGACTATGGTGTTA+TGG | 0.427501 | tig0029335:-14655 | Msa1441690:CDS |
| ATTTCCCTCCTCACCAAACC+TGG | 0.429641 | tig0029335:+15293 | None:intergenic |
| ATTGCTGCCATGGGATTCTC+TGG | 0.433448 | tig0029335:+13989 | None:intergenic |
| AACTTCGTTAGCAGGATTGT+TGG | 0.434227 | tig0029335:-14951 | Msa1441690:CDS |
| CATGACTGTGGTTGTGGTCA+TGG | 0.437773 | tig0029335:-15135 | Msa1441690:CDS |
| TTTAGGCATGGAAGTTTCAA+TGG | 0.439300 | tig0029335:-15393 | None:intergenic |
| GGCTGTCATGACTGTGGTTG+TGG | 0.441242 | tig0029335:-15141 | Msa1441690:CDS |
| GGATTGGGAACTTCGTTAGC+AGG | 0.446695 | tig0029335:-14959 | Msa1441690:CDS |
| CTTAGCTTTAGAATCTAAAA+CGG | 0.446937 | tig0029335:+14188 | None:intergenic |
| TAATGGAGCCATTGTTCAAA+GGG | 0.447359 | tig0029335:-15184 | Msa1441690:CDS |
| CAAAGGACTAAACAGAGGAT+TGG | 0.451197 | tig0029335:-14975 | Msa1441690:CDS |
| GGCTTAGCCAACTCTGTAGA+AGG | 0.451778 | tig0029335:-14447 | Msa1441690:intron |
| TCCACCATATCCAAACTTGA+AGG | 0.459404 | tig0029335:-14468 | Msa1441690:CDS |
| GCCTTCAAGTTTGGATATGG+TGG | 0.460456 | tig0029335:+14467 | None:intergenic |
| ATCAAAAGTTCTAAGGGTAA+TGG | 0.464081 | tig0029335:-13524 | Msa1441690:CDS |
| GGCAAAACTAGATCATGTTA+TGG | 0.464191 | tig0029335:-13089 | Msa1441690:CDS |
| TCGATTTACTTCCAATTACT+GGG | 0.468998 | tig0029335:+13257 | None:intergenic |
| CAAGACCAACTTTCAGAGAA+TGG | 0.469576 | tig0029335:+15234 | None:intergenic |
| TGGATATGGTGGATTTATGA+AGG | 0.471579 | tig0029335:+14478 | None:intergenic |
| GGGTAATGGCCAACAGCATA+AGG | 0.474387 | tig0029335:-13510 | Msa1441690:CDS |
| AAAGGACTAAACAGAGGATT+GGG | 0.474990 | tig0029335:-14974 | Msa1441690:CDS |
| TGCTTTCACTTCCATGCTAG+TGG | 0.483281 | tig0029335:-13119 | Msa1441690:CDS |
| AACAGGCATTGCAAGCAAGT+TGG | 0.483716 | tig0029335:-14035 | Msa1441690:intron |
| CACATTACCTTCTACAGAGT+TGG | 0.494928 | tig0029335:+14440 | None:intergenic |
| AATTATTCTGCTCCATAAGA+AGG | 0.495731 | tig0029335:+12947 | None:intergenic |
| CAACTGCACATAATGACAAC+AGG | 0.496230 | tig0029335:-13333 | Msa1441690:CDS |
| GATTTCCAGGTTTGGTGAGG+AGG | 0.505112 | tig0029335:-15298 | Msa1441690:CDS |
| ATACTCCATTCTCTGAAAGT+TGG | 0.519791 | tig0029335:-15239 | Msa1441690:CDS |
| GATCCTATCCCTTTGAACAA+TGG | 0.522592 | tig0029335:+15176 | None:intergenic |
| TTGTATTTCCAAATTGGTCA+GGG | 0.524590 | tig0029335:-14506 | Msa1441690:CDS |
| AGAAGGACAACGACAGAAGA+AGG | 0.527566 | tig0029335:-13209 | Msa1441690:CDS |
| ATTTCCAGGTTTGGTGAGGA+GGG | 0.533036 | tig0029335:-15297 | Msa1441690:CDS |
| AGAAGTATCAAAAGTTCTAA+GGG | 0.545176 | tig0029335:-13530 | Msa1441690:CDS |
| TACACTGTCGTAGCACTACA+TGG | 0.546505 | tig0029335:-13931 | Msa1441690:CDS |
| GATTGTTTGAGAGTGTTTGA+AGG | 0.549129 | tig0029335:+13470 | None:intergenic |
| TATAGATCACGGATTGACCT+TGG | 0.551863 | tig0029335:+13580 | None:intergenic |
| ATGGAAGTGAAAGCAGCAAA+GGG | 0.553411 | tig0029335:+13127 | None:intergenic |
| CTAATGGAGCCATTGTTCAA+AGG | 0.553954 | tig0029335:-15185 | Msa1441690:CDS |
| GCGATTTCAATGCATTGTCA+AGG | 0.563036 | tig0029335:+13428 | None:intergenic |
| CACTTTAGAGAGTTCAGAGA+TGG | 0.567128 | tig0029335:-13037 | Msa1441690:CDS |
| GTAGTGCTTCTGAGAACTCA+AGG | 0.568913 | tig0029335:+13149 | None:intergenic |
| AAGAATCTTTGTATAGATCA+CGG | 0.570177 | tig0029335:+13569 | None:intergenic |
| CTTGAGCCTAGTAAAAGTTG+TGG | 0.570351 | tig0029335:+13403 | None:intergenic |
| TGCCACCATCTCCACTAGCA+TGG | 0.571399 | tig0029335:+13108 | None:intergenic |
| CATGGAAGTGAAAGCAGCAA+AGG | 0.571864 | tig0029335:+13126 | None:intergenic |
| TGGCAGCAATATGCAAAAGT+AGG | 0.572216 | tig0029335:-13976 | Msa1441690:CDS |
| GATAGGATCAAATGCTATGT+GGG | 0.574841 | tig0029335:-15162 | Msa1441690:CDS |
| TCCCGAGAACAAATAAAAGA+AGG | 0.576657 | tig0029335:-13226 | Msa1441690:CDS |
| TAAAGCTAAGGATGAAACAC+TGG | 0.580961 | tig0029335:-14175 | Msa1441690:intron |
| GAGCCATTGTTCAAAGGGAT+AGG | 0.581364 | tig0029335:-15179 | Msa1441690:CDS |
| TCTACTATATGCATCGGCGT+TGG | 0.581570 | tig0029335:-14552 | Msa1441690:CDS |
| GGATAGGATCAAATGCTATG+TGG | 0.592083 | tig0029335:-15163 | Msa1441690:CDS |
| ATTGTTTGAGAGTGTTTGAA+GGG | 0.593546 | tig0029335:+13471 | None:intergenic |
| TAATGATGCAGCTACTGTTG+TGG | 0.595562 | tig0029335:-14286 | Msa1441690:intron |
| AAAGATTTCCAGGTTTGGTG+AGG | 0.606745 | tig0029335:-15301 | Msa1441690:CDS |
| TGTTGATAATGTCTTGAAGA+TGG | 0.607522 | tig0029335:-14589 | Msa1441690:CDS |
| GTGGTCATGGAGTTCACTGT+AGG | 0.611601 | tig0029335:-15122 | Msa1441690:intron |
| TTCCATGCTAGTGGAGATGG+TGG | 0.616449 | tig0029335:-13110 | Msa1441690:CDS |
| CGATTTACTTCCAATTACTG+GGG | 0.623538 | tig0029335:+13258 | None:intergenic |
| TCGCTCGAAATATTTGATCA+GGG | 0.624217 | tig0029335:+14900 | None:intergenic |
| TTGGCAAAGATGATCCAAGA+AGG | 0.626674 | tig0029335:-15262 | Msa1441690:CDS |
| CGTATCTCTACTATATGCAT+CGG | 0.629374 | tig0029335:-14558 | Msa1441690:CDS |
| AAATGAAGATGATTCATCAG+AGG | 0.647988 | tig0029335:-14235 | Msa1441690:CDS |
| TGTATTTCCAAATTGGTCAG+GGG | 0.650407 | tig0029335:-14505 | Msa1441690:CDS |
| GCAGGAGGGACTTTATCCAA+AGG | 0.661845 | tig0029335:-14992 | Msa1441690:intron |
| TTATCCAAAGGACTAAACAG+AGG | 0.684276 | tig0029335:-14980 | Msa1441690:CDS |
| CGACAGTGTAACTAAAATGG+CGG | 0.692887 | tig0029335:+13944 | None:intergenic |
| CATTGTTGTTGAAGACACCA+AGG | 0.696785 | tig0029335:-13597 | Msa1441690:intron |
| GATGCTGCCAGAGAATCCCA+TGG | 0.698745 | tig0029335:-13996 | Msa1441690:CDS |
| TATGTGGGCTGTCATGACTG+TGG | 0.700236 | tig0029335:-15147 | Msa1441690:CDS |
| TCCCATTTACAAGTGCTACG+AGG | 0.725963 | tig0029335:-14211 | Msa1441690:CDS |
| TCTTCAAGACATTATCAACA+CGG | 0.726201 | tig0029335:+14592 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACTATTTTAAAAAATAGAA+GGG | + | tig0029335:14232-14251 | None:intergenic | 10.0% |
| !!! | ATACTATTTTAAAAAATAGA+AGG | + | tig0029335:14233-14252 | None:intergenic | 10.0% |
| !! | AATGGTTAAGAAAAATATTT+AGG | + | tig0029335:13597-13616 | None:intergenic | 15.0% |
| !!! | AATAGTCTACATTATTTTAT+TGG | - | tig0029335:14617-14636 | Msa1441690:CDS | 15.0% |
| !!! | AGAGTTATATTTTATACTAA+AGG | + | tig0029335:14670-14689 | None:intergenic | 15.0% |
| !!! | TTATCAACTATATTGATTTT+CGG | + | tig0029335:15361-15380 | None:intergenic | 15.0% |
| !! | TCATAATTCTTCTTGATATA+GGG | + | tig0029335:13669-13688 | None:intergenic | 20.0% |
| !! | CGATACAATTATCAAATTAA+AGG | + | tig0029335:13718-13737 | None:intergenic | 20.0% |
| !! | TACTTTACTTGACAAAAAAA+GGG | + | tig0029335:14197-14216 | None:intergenic | 20.0% |
| !! | TTAAATAGTACGTAAGTTAA+AGG | + | tig0029335:14716-14735 | None:intergenic | 20.0% |
| !!! | ATGATAATTTTACTAAGTTG+TGG | + | tig0029335:15160-15179 | None:intergenic | 20.0% |
| !! | TGTATCTTTGTTGTATCTAA+TGG | - | tig0029335:13134-13153 | Msa1441690:CDS | 25.0% |
| ! | TGTTTATATCACAATCTCAT+AGG | - | tig0029335:13299-13318 | Msa1441690:CDS | 25.0% |
| !! | TTTAAGAGAAGCTTAATTTG+TGG | - | tig0029335:13562-13581 | Msa1441690:CDS | 25.0% |
| ! | GTCATAATTCTTCTTGATAT+AGG | + | tig0029335:13670-13689 | None:intergenic | 25.0% |
| ! | ATCAAGAAGAATTATGACTA+TGG | - | tig0029335:13672-13691 | Msa1441690:intron | 25.0% |
| ! | GTCTATTTGTATTTCCAAAT+TGG | - | tig0029335:13823-13842 | Msa1441690:intron | 25.0% |
| ! | AGCAATATTCTTTAATGAAG+TGG | + | tig0029335:13929-13948 | None:intergenic | 25.0% |
| !!! | CTTAGCTTTAGAATCTAAAA+CGG | + | tig0029335:14150-14169 | None:intergenic | 25.0% |
| ! | ACTTTACTTGACAAAAAAAG+GGG | + | tig0029335:14196-14215 | None:intergenic | 25.0% |
| ! | GTACTTTACTTGACAAAAAA+AGG | + | tig0029335:14198-14217 | None:intergenic | 25.0% |
| ! | AATAACATGACAGATAATCT+AGG | + | tig0029335:14487-14506 | None:intergenic | 25.0% |
| ! | ATTGATTAAGATCTATATGC+AGG | - | tig0029335:14544-14563 | Msa1441690:CDS | 25.0% |
| ! | AAGAATCTTTGTATAGATCA+CGG | + | tig0029335:14769-14788 | None:intergenic | 25.0% |
| !!! | AAGAAGTATCAAAAGTTCTA+AGG | - | tig0029335:14804-14823 | Msa1441690:intron | 25.0% |
| !!! | AGAAGTATCAAAAGTTCTAA+GGG | - | tig0029335:14805-14824 | Msa1441690:intron | 25.0% |
| ! | TATGGATAAAGTTGAAGAAT+TGG | - | tig0029335:15264-15283 | Msa1441690:CDS | 25.0% |
| ! | ATGGATAAAGTTGAAGAATT+GGG | - | tig0029335:15265-15284 | Msa1441690:CDS | 25.0% |
| TGAGCATTTCTTAGTATTGT+TGG | + | tig0029335:12974-12993 | None:intergenic | 30.0% | |
| GATAAAGTGAAAAGATTTCC+AGG | - | tig0029335:13024-13043 | Msa1441690:CDS | 30.0% | |
| TCACAATCTCATAGGTATTA+AGG | - | tig0029335:13307-13326 | Msa1441690:CDS | 30.0% | |
| ! | ATATTTCGAGCGATTTTCAT+TGG | - | tig0029335:13445-13464 | Msa1441690:CDS | 30.0% |
| GGTAAGCATTTATTACATCA+TGG | - | tig0029335:13487-13506 | Msa1441690:CDS | 30.0% | |
| ! | GAATTATGACTATGGTGTTA+TGG | - | tig0029335:13680-13699 | Msa1441690:intron | 30.0% |
| TCTTCAAGACATTATCAACA+CGG | + | tig0029335:13746-13765 | None:intergenic | 30.0% | |
| !! | TGTTGATAATGTCTTGAAGA+TGG | - | tig0029335:13746-13765 | Msa1441690:intron | 30.0% |
| TTTGTATTTCCAAATTGGTC+AGG | - | tig0029335:13828-13847 | Msa1441690:intron | 30.0% | |
| TTGTATTTCCAAATTGGTCA+GGG | - | tig0029335:13829-13848 | Msa1441690:intron | 30.0% | |
| GTCTCAATCTATATAAGTGA+TGG | - | tig0029335:14020-14039 | Msa1441690:CDS | 30.0% | |
| AAATGAAGATGATTCATCAG+AGG | - | tig0029335:14100-14119 | Msa1441690:intron | 30.0% | |
| !!! | CGTTTTAGATTCTAAAGCTA+AGG | - | tig0029335:14148-14167 | Msa1441690:intron | 30.0% |
| TTTGTCAAGTAAAGTACACT+AGG | - | tig0029335:14201-14220 | Msa1441690:CDS | 30.0% | |
| ! | CTTACAGTGTTGAATTAAAC+AGG | - | tig0029335:14283-14302 | Msa1441690:intron | 30.0% |
| TACTAAATCAGCTATCGATA+AGG | - | tig0029335:14450-14469 | Msa1441690:CDS | 30.0% | |
| ! | GTCATGTTATTGATAGTACA+TGG | - | tig0029335:14496-14515 | Msa1441690:CDS | 30.0% |
| GCTAGCATCTTCATAATTAT+TGG | - | tig0029335:14639-14658 | Msa1441690:CDS | 30.0% | |
| !! | ATCAAAAGTTCTAAGGGTAA+TGG | - | tig0029335:14811-14830 | Msa1441690:intron | 30.0% |
| !! | ATTGTTTGAGAGTGTTTGAA+GGG | + | tig0029335:14867-14886 | None:intergenic | 30.0% |
| !! | TTGCTTTAGTTGATGTTTTG+GGG | + | tig0029335:14985-15004 | None:intergenic | 30.0% |
| !! | GTTGCTTTAGTTGATGTTTT+GGG | + | tig0029335:14986-15005 | None:intergenic | 30.0% |
| !! | AGTTGCTTTAGTTGATGTTT+TGG | + | tig0029335:14987-15006 | None:intergenic | 30.0% |
| TCGATTTACTTCCAATTACT+GGG | + | tig0029335:15081-15100 | None:intergenic | 30.0% | |
| TTCGATTTACTTCCAATTAC+TGG | + | tig0029335:15082-15101 | None:intergenic | 30.0% | |
| !! | TCCTTCTTTTATTTGTTCTC+GGG | + | tig0029335:15113-15132 | None:intergenic | 30.0% |
| !! | GTCCTTCTTTTATTTGTTCT+CGG | + | tig0029335:15114-15133 | None:intergenic | 30.0% |
| CTAAGAAATGCTCAAGTCAT+TGG | - | tig0029335:12980-12999 | Msa1441690:CDS | 35.0% | |
| AGTGAAAAGATTTCCAGGTT+TGG | - | tig0029335:13029-13048 | Msa1441690:CDS | 35.0% | |
| ! | ATACTCCATTCTCTGAAAGT+TGG | - | tig0029335:13096-13115 | Msa1441690:CDS | 35.0% |
| TAATGGAGCCATTGTTCAAA+GGG | - | tig0029335:13151-13170 | Msa1441690:CDS | 35.0% | |
| GATAGGATCAAATGCTATGT+GGG | - | tig0029335:13173-13192 | Msa1441690:CDS | 35.0% | |
| TAAGGATCAGTTATGATTGC+AGG | - | tig0029335:13325-13344 | Msa1441690:CDS | 35.0% | |
| TTATCCAAAGGACTAAACAG+AGG | - | tig0029335:13355-13374 | Msa1441690:CDS | 35.0% | |
| AAAGGACTAAACAGAGGATT+GGG | - | tig0029335:13361-13380 | Msa1441690:CDS | 35.0% | |
| TCGCTCGAAATATTTGATCA+GGG | + | tig0029335:13438-13457 | None:intergenic | 35.0% | |
| ATCGCTCGAAATATTTGATC+AGG | + | tig0029335:13439-13458 | None:intergenic | 35.0% | |
| CTTACCTAAAAGAAAAACCG+CGG | + | tig0029335:13473-13492 | None:intergenic | 35.0% | |
| GCAAACAAACAGTGAAACAA+TGG | + | tig0029335:13615-13634 | None:intergenic | 35.0% | |
| TTGTTTCACTGTTTGTTTGC+AGG | - | tig0029335:13615-13634 | Msa1441690:intron | 35.0% | |
| CGTATCTCTACTATATGCAT+CGG | - | tig0029335:13777-13796 | Msa1441690:intron | 35.0% | |
| TGTATTTCCAAATTGGTCAG+GGG | - | tig0029335:13830-13849 | Msa1441690:intron | 35.0% | |
| !! | TGGATATGGTGGATTTATGA+AGG | + | tig0029335:13860-13879 | None:intergenic | 35.0% |
| ! | TAAGCCTTCAAGTTTGGATA+TGG | + | tig0029335:13874-13893 | None:intergenic | 35.0% |
| TAAAGCTAAGGATGAAACAC+TGG | - | tig0029335:14160-14179 | Msa1441690:intron | 35.0% | |
| CTACGACAGTGTAACTAAAA+TGG | + | tig0029335:14397-14416 | None:intergenic | 35.0% | |
| ATGTTTGCAGTCAGAAATTC+AGG | - | tig0029335:14427-14446 | Msa1441690:intron | 35.0% | |
| CAGGCTTATAATGATTGTCA+GGG | - | tig0029335:14563-14582 | Msa1441690:CDS | 35.0% | |
| ! | TTGGTGTCTTCAACAACAAT+GGG | + | tig0029335:14739-14758 | None:intergenic | 35.0% |
| !!! | ATGCTTTTTCCTTATGCTGT+TGG | + | tig0029335:14837-14856 | None:intergenic | 35.0% |
| !! | GATTGTTTGAGAGTGTTTGA+AGG | + | tig0029335:14868-14887 | None:intergenic | 35.0% |
| !! | TGCTTTAGTTGATGTTTTGG+GGG | + | tig0029335:14984-15003 | None:intergenic | 35.0% |
| CGATTTACTTCCAATTACTG+GGG | + | tig0029335:15080-15099 | None:intergenic | 35.0% | |
| TCCCGAGAACAAATAAAAGA+AGG | - | tig0029335:15109-15128 | Msa1441690:intron | 35.0% | |
| GGCAAAACTAGATCATGTTA+TGG | - | tig0029335:15246-15265 | Msa1441690:CDS | 35.0% | |
| ! | GATAATGACTTGCCTTCTTA+TGG | - | tig0029335:15376-15395 | Msa1441690:CDS | 35.0% |
| !! | AAAGATTTCCAGGTTTGGTG+AGG | - | tig0029335:13034-13053 | Msa1441690:CDS | 40.0% |
| AGGAGGGAAATTTGGAAAGT+TGG | - | tig0029335:13054-13073 | Msa1441690:CDS | 40.0% | |
| TTGGCAAAGATGATCCAAGA+AGG | - | tig0029335:13073-13092 | Msa1441690:CDS | 40.0% | |
| ! | AGAGAATGGAGTATCCTTCT+TGG | + | tig0029335:13090-13109 | None:intergenic | 40.0% |
| CAAGACCAACTTTCAGAGAA+TGG | + | tig0029335:13104-13123 | None:intergenic | 40.0% | |
| CTAATGGAGCCATTGTTCAA+AGG | - | tig0029335:13150-13169 | Msa1441690:CDS | 40.0% | |
| GATCCTATCCCTTTGAACAA+TGG | + | tig0029335:13162-13181 | None:intergenic | 40.0% | |
| GGATAGGATCAAATGCTATG+TGG | - | tig0029335:13172-13191 | Msa1441690:CDS | 40.0% | |
| GATCAGTTATGATTGCAGGA+GGG | - | tig0029335:13329-13348 | Msa1441690:CDS | 40.0% | |
| CAATCCTCTGTTTAGTCCTT+TGG | + | tig0029335:13362-13381 | None:intergenic | 40.0% | |
| CAAAGGACTAAACAGAGGAT+TGG | - | tig0029335:13360-13379 | Msa1441690:CDS | 40.0% | |
| AACTTCGTTAGCAGGATTGT+TGG | - | tig0029335:13384-13403 | Msa1441690:CDS | 40.0% | |
| !! | AGAGAAGCTTAATTTGTGGC+TGG | - | tig0029335:13566-13585 | Msa1441690:CDS | 40.0% |
| TCCACCATATCCAAACTTGA+AGG | - | tig0029335:13867-13886 | Msa1441690:intron | 40.0% | |
| CACATTACCTTCTACAGAGT+TGG | + | tig0029335:13898-13917 | None:intergenic | 40.0% | |
| TCTTTAATGAAGTGGTGACC+TGG | + | tig0029335:13921-13940 | None:intergenic | 40.0% | |
| TAATGATGCAGCTACTGTTG+TGG | - | tig0029335:14049-14068 | Msa1441690:intron | 40.0% | |
| ACTTGACAAAAAAAGGGGCA+TGG | + | tig0029335:14191-14210 | None:intergenic | 40.0% | |
| ! | CTTTTGCATATTGCTGCCAT+GGG | + | tig0029335:14358-14377 | None:intergenic | 40.0% |
| ! | ACTTTTGCATATTGCTGCCA+TGG | + | tig0029335:14359-14378 | None:intergenic | 40.0% |
| TGGCAGCAATATGCAAAAGT+AGG | - | tig0029335:14359-14378 | Msa1441690:intron | 40.0% | |
| CGACAGTGTAACTAAAATGG+CGG | + | tig0029335:14394-14413 | None:intergenic | 40.0% | |
| GCAGGCTTATAATGATTGTC+AGG | - | tig0029335:14562-14581 | Msa1441690:CDS | 40.0% | |
| !! | CTTGGTGTCTTCAACAACAA+TGG | + | tig0029335:14740-14759 | None:intergenic | 40.0% |
| ! | CATTGTTGTTGAAGACACCA+AGG | - | tig0029335:14738-14757 | Msa1441690:intron | 40.0% |
| ! | TATAGATCACGGATTGACCT+TGG | + | tig0029335:14758-14777 | None:intergenic | 40.0% |
| GCGATTTCAATGCATTGTCA+AGG | + | tig0029335:14910-14929 | None:intergenic | 40.0% | |
| ! | TCGCAACCACAACTTTTACT+AGG | - | tig0029335:14926-14945 | Msa1441690:CDS | 40.0% |
| CTTGAGCCTAGTAAAAGTTG+TGG | + | tig0029335:14935-14954 | None:intergenic | 40.0% | |
| ! | CACAACTTTTACTAGGCTCA+AGG | - | tig0029335:14933-14952 | Msa1441690:CDS | 40.0% |
| !!! | TTGATGTTTTGGGGGTTATG+GGG | + | tig0029335:14976-14995 | None:intergenic | 40.0% |
| !!! | GTTGATGTTTTGGGGGTTAT+GGG | + | tig0029335:14977-14996 | None:intergenic | 40.0% |
| !!! | AGTTGATGTTTTGGGGGTTA+TGG | + | tig0029335:14978-14997 | None:intergenic | 40.0% |
| CAACTGCACATAATGACAAC+AGG | - | tig0029335:15002-15021 | Msa1441690:intron | 40.0% | |
| ! | GATTGTTGTTCCCCAGTAAT+TGG | - | tig0029335:15067-15086 | Msa1441690:intron | 40.0% |
| ! | AACGACAGAAGAAGGTTTTG+AGG | - | tig0029335:15134-15153 | Msa1441690:CDS | 40.0% |
| ATGGAAGTGAAAGCAGCAAA+GGG | + | tig0029335:15211-15230 | None:intergenic | 40.0% | |
| ! | CACTTTAGAGAGTTCAGAGA+TGG | - | tig0029335:15298-15317 | Msa1441690:CDS | 40.0% |
| !! | ATTTCCAGGTTTGGTGAGGA+GGG | - | tig0029335:13038-13057 | Msa1441690:CDS | 45.0% |
| ! | GTTTGGTGAGGAGGGAAATT+TGG | - | tig0029335:13046-13065 | Msa1441690:CDS | 45.0% |
| GAGCCATTGTTCAAAGGGAT+AGG | - | tig0029335:13156-13175 | Msa1441690:CDS | 45.0% | |
| GGAGTTCACTGTAGGTAAAC+AGG | - | tig0029335:13221-13240 | Msa1441690:CDS | 45.0% | |
| GGATCAGTTATGATTGCAGG+AGG | - | tig0029335:13328-13347 | Msa1441690:CDS | 45.0% | |
| ! | TCTACTATATGCATCGGCGT+TGG | - | tig0029335:13783-13802 | Msa1441690:intron | 45.0% |
| ! | GCCTTCAAGTTTGGATATGG+TGG | + | tig0029335:13871-13890 | None:intergenic | 45.0% |
| ! | GTTGGCTAAGCCTTCAAGTT+TGG | + | tig0029335:13880-13899 | None:intergenic | 45.0% |
| TCTGTAGAAGGTAATGTGCC+AGG | - | tig0029335:13900-13919 | Msa1441690:intron | 45.0% | |
| TCCCATTTACAAGTGCTACG+AGG | - | tig0029335:14124-14143 | Msa1441690:intron | 45.0% | |
| GCCTCGTAGCACTTGTAAAT+GGG | + | tig0029335:14128-14147 | None:intergenic | 45.0% | |
| ! | AACAGGCATTGCAAGCAAGT+TGG | - | tig0029335:14300-14319 | Msa1441690:intron | 45.0% |
| ! | ACAGGCATTGCAAGCAAGTT+GGG | - | tig0029335:14301-14320 | Msa1441690:intron | 45.0% |
| TGGCAGCATCTTGAGTATCT+TGG | + | tig0029335:14329-14348 | None:intergenic | 45.0% | |
| TACACTGTCGTAGCACTACA+TGG | - | tig0029335:14404-14423 | Msa1441690:intron | 45.0% | |
| !!! | TGATGTTTTGGGGGTTATGG+GGG | + | tig0029335:14975-14994 | None:intergenic | 45.0% |
| AGAAGGACAACGACAGAAGA+AGG | - | tig0029335:15126-15145 | Msa1441690:CDS | 45.0% | |
| ! | GTAGTGCTTCTGAGAACTCA+AGG | + | tig0029335:15189-15208 | None:intergenic | 45.0% |
| CATGGAAGTGAAAGCAGCAA+AGG | + | tig0029335:15212-15231 | None:intergenic | 45.0% | |
| TGCTTTCACTTCCATGCTAG+TGG | - | tig0029335:15216-15235 | Msa1441690:CDS | 45.0% | |
| !! | GATTTCCAGGTTTGGTGAGG+AGG | - | tig0029335:13037-13056 | Msa1441690:CDS | 50.0% |
| ATTTCCCTCCTCACCAAACC+TGG | + | tig0029335:13045-13064 | None:intergenic | 50.0% | |
| ! | TATGTGGGCTGTCATGACTG+TGG | - | tig0029335:13188-13207 | Msa1441690:CDS | 50.0% |
| CATGACTGTGGTTGTGGTCA+TGG | - | tig0029335:13200-13219 | Msa1441690:CDS | 50.0% | |
| GTGGTCATGGAGTTCACTGT+AGG | - | tig0029335:13213-13232 | Msa1441690:CDS | 50.0% | |
| GCAGGAGGGACTTTATCCAA+AGG | - | tig0029335:13343-13362 | Msa1441690:CDS | 50.0% | |
| GGATTGGGAACTTCGTTAGC+AGG | - | tig0029335:13376-13395 | Msa1441690:CDS | 50.0% | |
| ! | AGCGATTTTCATTGGAGCCG+CGG | - | tig0029335:13453-13472 | Msa1441690:CDS | 50.0% |
| ! | GGAGCCGCGGTTTTTCTTTT+AGG | - | tig0029335:13466-13485 | Msa1441690:CDS | 50.0% |
| AGGTCTTCCCCTGACCAATT+TGG | + | tig0029335:13840-13859 | None:intergenic | 50.0% | |
| GGCTTAGCCAACTCTGTAGA+AGG | - | tig0029335:13888-13907 | Msa1441690:intron | 50.0% | |
| GGCCTCGTAGCACTTGTAAA+TGG | + | tig0029335:14129-14148 | None:intergenic | 50.0% | |
| ATTGCTGCCATGGGATTCTC+TGG | + | tig0029335:14349-14368 | None:intergenic | 50.0% | |
| ! | GGGTAATGGCCAACAGCATA+AGG | - | tig0029335:14825-14844 | Msa1441690:intron | 50.0% |
| CACTTCCATGCTAGTGGAGA+TGG | - | tig0029335:15222-15241 | Msa1441690:CDS | 50.0% | |
| TTCCATGCTAGTGGAGATGG+TGG | - | tig0029335:15225-15244 | Msa1441690:CDS | 50.0% | |
| GGCTGTCATGACTGTGGTTG+TGG | - | tig0029335:13194-13213 | Msa1441690:CDS | 55.0% | |
| GATGCTGCCAGAGAATCCCA+TGG | - | tig0029335:14339-14358 | Msa1441690:intron | 55.0% | |
| TGCCACCATCTCCACTAGCA+TGG | + | tig0029335:15230-15249 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0029335 | gene | 12949 | 15408 | 12949 | ID=Msa1441690;Name=Msa1441690 |
| tig0029335 | mRNA | 12949 | 15408 | 12949 | ID=Msa1441690-mRNA-1;Parent=Msa1441690;Name=Msa1441690-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|1|1|1|6|0|540 |
| tig0029335 | exon | 15123 | 15408 | 15123 | ID=Msa1441690-mRNA-1:exon:12989;Parent=Msa1441690-mRNA-1 |
| tig0029335 | exon | 14870 | 15010 | 14870 | ID=Msa1441690-mRNA-1:exon:12988;Parent=Msa1441690-mRNA-1 |
| tig0029335 | exon | 14448 | 14720 | 14448 | ID=Msa1441690-mRNA-1:exon:12987;Parent=Msa1441690-mRNA-1 |
| tig0029335 | exon | 14176 | 14297 | 14176 | ID=Msa1441690-mRNA-1:exon:12986;Parent=Msa1441690-mRNA-1 |
| tig0029335 | exon | 13909 | 14052 | 13909 | ID=Msa1441690-mRNA-1:exon:12985;Parent=Msa1441690-mRNA-1 |
| tig0029335 | exon | 12949 | 13605 | 12949 | ID=Msa1441690-mRNA-1:exon:12984;Parent=Msa1441690-mRNA-1 |
| tig0029335 | CDS | 15123 | 15408 | 15123 | ID=Msa1441690-mRNA-1:cds;Parent=Msa1441690-mRNA-1 |
| tig0029335 | CDS | 14870 | 15010 | 14870 | ID=Msa1441690-mRNA-1:cds;Parent=Msa1441690-mRNA-1 |
| tig0029335 | CDS | 14448 | 14720 | 14448 | ID=Msa1441690-mRNA-1:cds;Parent=Msa1441690-mRNA-1 |
| tig0029335 | CDS | 14176 | 14297 | 14176 | ID=Msa1441690-mRNA-1:cds;Parent=Msa1441690-mRNA-1 |
| tig0029335 | CDS | 13909 | 14052 | 13909 | ID=Msa1441690-mRNA-1:cds;Parent=Msa1441690-mRNA-1 |
| tig0029335 | CDS | 12949 | 13605 | 12949 | ID=Msa1441690-mRNA-1:cds;Parent=Msa1441690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
