Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115690 | XP_013470395.1 | 97.201 | 536 | 11 | 2 | 1 | 536 | 5 | 536 | 0.0 | 1075 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115690 | sp|O49696|ALMTC_ARATH | 55.179 | 531 | 200 | 6 | 21 | 521 | 27 | 549 | 0.0 | 578 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115690 | A0A072VSP9 | 97.201 | 536 | 11 | 2 | 1 | 536 | 5 | 536 | 0.0 | 1075 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0045260 | Msa0115690 | 0.932894 | 4.285891e-95 | -8.615850e-47 |
| Msa0115690 | Msa1416200 | 0.970174 | 3.222143e-131 | -8.615850e-47 |
| Msa0115690 | Msa1441690 | 0.960253 | 2.387784e-118 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115690 | MtrunA17_Chr1g0212201 | 97.201 | 536 | 11 | 2 | 1 | 536 | 5 | 536 | 0.0 | 1075 |
| Msa0115690 | MtrunA17_Chr1g0212251 | 83.643 | 538 | 80 | 6 | 1 | 536 | 1 | 532 | 0.0 | 917 |
| Msa0115690 | MtrunA17_Chr1g0212291 | 82.495 | 537 | 85 | 4 | 3 | 535 | 4 | 535 | 0.0 | 890 |
| Msa0115690 | MtrunA17_Chr4g0054741 | 58.922 | 538 | 203 | 6 | 1 | 536 | 13 | 534 | 0.0 | 602 |
| Msa0115690 | MtrunA17_Chr5g0400471 | 57.113 | 471 | 167 | 6 | 93 | 536 | 3 | 465 | 1.73e-170 | 490 |
| Msa0115690 | MtrunA17_Chr4g0054771 | 56.750 | 400 | 155 | 4 | 139 | 536 | 3 | 386 | 4.20e-152 | 440 |
| Msa0115690 | MtrunA17_Chr1g0188871 | 41.406 | 384 | 214 | 4 | 12 | 394 | 25 | 398 | 3.55e-100 | 310 |
| Msa0115690 | MtrunA17_Chr1g0188881 | 41.918 | 365 | 198 | 5 | 16 | 377 | 35 | 388 | 3.43e-97 | 303 |
| Msa0115690 | MtrunA17_Chr4g0025591 | 43.452 | 336 | 180 | 2 | 22 | 350 | 19 | 351 | 3.54e-90 | 285 |
| Msa0115690 | MtrunA17_Chr7g0267471 | 43.860 | 342 | 186 | 2 | 37 | 377 | 42 | 378 | 5.35e-86 | 274 |
| Msa0115690 | MtrunA17_Chr2g0321971 | 38.701 | 354 | 209 | 2 | 1 | 351 | 1 | 349 | 5.71e-83 | 265 |
| Msa0115690 | MtrunA17_Chr7g0259731 | 39.172 | 314 | 181 | 4 | 42 | 351 | 61 | 368 | 2.65e-76 | 248 |
| Msa0115690 | MtrunA17_Chr8g0390931 | 31.579 | 494 | 303 | 10 | 37 | 504 | 59 | 543 | 4.38e-74 | 245 |
| Msa0115690 | MtrunA17_Chr1g0210101 | 31.976 | 491 | 296 | 11 | 34 | 504 | 110 | 582 | 6.38e-72 | 240 |
| Msa0115690 | MtrunA17_Chr2g0321961 | 38.123 | 341 | 198 | 3 | 21 | 351 | 11 | 348 | 9.58e-72 | 236 |
| Msa0115690 | MtrunA17_Chr6g0484691 | 31.862 | 521 | 310 | 13 | 17 | 504 | 68 | 576 | 2.80e-71 | 238 |
| Msa0115690 | MtrunA17_Chr8g0390921 | 31.774 | 513 | 314 | 13 | 23 | 504 | 46 | 553 | 4.87e-68 | 229 |
| Msa0115690 | MtrunA17_Chr8g0390901 | 29.091 | 440 | 281 | 8 | 92 | 504 | 10 | 445 | 3.51e-55 | 192 |
| Msa0115690 | MtrunA17_Chr4g0054761 | 56.835 | 139 | 60 | 0 | 1 | 139 | 13 | 151 | 1.03e-34 | 128 |
| Msa0115690 | MtrunA17_Chr5g0400481 | 49.474 | 95 | 48 | 0 | 2 | 96 | 22 | 116 | 2.20e-27 | 106 |
| Msa0115690 | MtrunA17_Chr1g0209601 | 70.833 | 48 | 13 | 1 | 11 | 58 | 6 | 52 | 3.98e-15 | 69.7 |
| Msa0115690 | MtrunA17_Chr8g0390911 | 43.662 | 71 | 39 | 1 | 23 | 92 | 50 | 120 | 1.69e-14 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115690 | AT4G17970.1 | 55.179 | 531 | 200 | 6 | 21 | 521 | 27 | 549 | 0.0 | 578 |
| Msa0115690 | AT5G46610.1 | 53.959 | 543 | 209 | 8 | 1 | 521 | 12 | 535 | 0.0 | 562 |
| Msa0115690 | AT5G46600.1 | 54.251 | 494 | 204 | 7 | 31 | 505 | 36 | 526 | 0.0 | 528 |
| Msa0115690 | AT5G46610.2 | 50.460 | 543 | 204 | 9 | 1 | 521 | 12 | 511 | 6.32e-178 | 511 |
| Msa0115690 | AT5G46610.3 | 47.698 | 543 | 196 | 9 | 1 | 521 | 12 | 488 | 2.60e-161 | 468 |
| Msa0115690 | AT4G00910.1 | 32.193 | 497 | 268 | 7 | 20 | 511 | 45 | 477 | 5.73e-96 | 300 |
| Msa0115690 | AT1G08440.1 | 42.056 | 321 | 186 | 0 | 31 | 351 | 7 | 327 | 2.41e-82 | 265 |
| Msa0115690 | AT3G11680.2 | 40.556 | 360 | 201 | 3 | 33 | 392 | 34 | 380 | 4.50e-77 | 251 |
| Msa0115690 | AT3G11680.1 | 40.556 | 360 | 201 | 3 | 33 | 392 | 32 | 378 | 5.80e-77 | 251 |
| Msa0115690 | AT3G18440.1 | 31.961 | 510 | 298 | 12 | 31 | 504 | 73 | 569 | 9.82e-77 | 253 |
| Msa0115690 | AT1G08430.1 | 40.123 | 324 | 191 | 1 | 31 | 351 | 7 | 330 | 3.33e-75 | 246 |
| Msa0115690 | AT2G27240.2 | 39.496 | 357 | 200 | 4 | 31 | 382 | 7 | 352 | 2.47e-74 | 244 |
| Msa0115690 | AT2G27240.1 | 37.566 | 378 | 204 | 4 | 31 | 382 | 7 | 378 | 1.52e-72 | 240 |
| Msa0115690 | AT1G18420.1 | 29.511 | 532 | 329 | 12 | 9 | 504 | 56 | 577 | 1.09e-71 | 239 |
| Msa0115690 | AT1G18420.2 | 30.020 | 503 | 307 | 11 | 38 | 504 | 1 | 494 | 1.62e-70 | 234 |
| Msa0115690 | AT1G68600.1 | 30.957 | 533 | 319 | 16 | 1 | 507 | 23 | 532 | 6.21e-69 | 231 |
| Msa0115690 | AT2G17470.1 | 31.148 | 488 | 307 | 11 | 37 | 504 | 31 | 509 | 1.33e-67 | 228 |
| Msa0115690 | AT2G17470.2 | 31.148 | 488 | 307 | 11 | 37 | 504 | 53 | 531 | 2.18e-67 | 228 |
| Msa0115690 | AT1G25480.1 | 30.368 | 517 | 318 | 14 | 11 | 504 | 44 | 541 | 2.49e-67 | 227 |
| Msa0115690 | AT4G17585.1 | 61.429 | 70 | 22 | 2 | 21 | 89 | 27 | 92 | 6.18e-22 | 92.8 |
Find 104 sgRNAs with CRISPR-Local
Find 320 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTGGTGAGGAGGGAAATT+TGG | 0.194186 | 1_3:-34629991 | Msa0115690:CDS |
| TTCGATTTACTTCCAATTAC+TGG | 0.207825 | 1_3:+34627952 | None:intergenic |
| GATAATGACTTGCCTTCTTA+TGG | 0.225915 | 1_3:-34627655 | Msa0115690:CDS |
| CAATCCTCTGTTTAGTCCTT+TGG | 0.226640 | 1_3:+34629672 | None:intergenic |
| TGTATCTTTGTTGTATCTAA+TGG | 0.228111 | 1_3:-34629903 | Msa0115690:CDS |
| GGCCTCGTAGCACTTGTAAA+TGG | 0.244757 | 1_3:+34628905 | None:intergenic |
| GATTGTTGTTCCCCAGTAAT+TGG | 0.275194 | 1_3:-34627964 | Msa0115690:CDS |
| AAGAAGTATCAAAAGTTCTA+AGG | 0.276507 | 1_3:-34628227 | Msa0115690:CDS |
| GTTGGCTAAGCCTTCAAGTT+TGG | 0.288017 | 1_3:+34629154 | None:intergenic |
| AGGTCTTCCCCTGACCAATT+TGG | 0.290568 | 1_3:+34629194 | None:intergenic |
| GTCTATTTGTATTTCCAAAT+TGG | 0.292616 | 1_3:-34629208 | Msa0115690:CDS |
| CGATACAATTATCAAATTAA+AGG | 0.294901 | 1_3:+34629316 | None:intergenic |
| TGAGCATTTCTTAGTATTGT+TGG | 0.297879 | 1_3:+34630066 | None:intergenic |
| GTCATAATTCTTCTTGATAT+AGG | 0.301733 | 1_3:+34629364 | None:intergenic |
| AGTTGCTTTAGTTGATGTTT+TGG | 0.316900 | 1_3:+34628047 | None:intergenic |
| TCATAATTCTTCTTGATATA+GGG | 0.317116 | 1_3:+34629365 | None:intergenic |
| ATGTTTGCAGTCAGAAATTC+AGG | 0.318176 | 1_3:-34628604 | Msa0115690:intron |
| TATGGATAAAGTTGAAGAAT+TGG | 0.322871 | 1_3:-34627767 | Msa0115690:CDS |
| CTACGACAGTGTAACTAAAA+TGG | 0.337816 | 1_3:+34628637 | None:intergenic |
| TAAGCCTTCAAGTTTGGATA+TGG | 0.348181 | 1_3:+34629160 | None:intergenic |
| GATAAAGTGAAAAGATTTCC+AGG | 0.365738 | 1_3:-34630013 | Msa0115690:CDS |
| CTAAGAAATGCTCAAGTCAT+TGG | 0.367385 | 1_3:-34630057 | Msa0115690:CDS |
| ATCGCTCGAAATATTTGATC+AGG | 0.377745 | 1_3:+34629595 | None:intergenic |
| ATGGATAAAGTTGAAGAATT+GGG | 0.381672 | 1_3:-34627766 | Msa0115690:CDS |
| TTTGTATTTCCAAATTGGTC+AGG | 0.383204 | 1_3:-34629203 | Msa0115690:CDS |
| TGGCAGCATCTTGAGTATCT+TGG | 0.404533 | 1_3:+34628705 | None:intergenic |
| AGGAGGGAAATTTGGAAAGT+TGG | 0.407214 | 1_3:-34629983 | Msa0115690:CDS |
| CACTTCCATGCTAGTGGAGA+TGG | 0.408461 | 1_3:-34627809 | Msa0115690:CDS |
| ATCAAGAAGAATTATGACTA+TGG | 0.415116 | 1_3:-34629359 | Msa0115690:CDS |
| AGTGAAAAGATTTCCAGGTT+TGG | 0.418187 | 1_3:-34630008 | Msa0115690:CDS |
| ACAGGCATTGCAAGCAAGTT+GGG | 0.420671 | 1_3:-34628730 | Msa0115690:intron |
| GCCTCGTAGCACTTGTAAAT+GGG | 0.427131 | 1_3:+34628906 | None:intergenic |
| GAATTATGACTATGGTGTTA+TGG | 0.427501 | 1_3:-34629351 | Msa0115690:CDS |
| ATTTCCCTCCTCACCAAACC+TGG | 0.429641 | 1_3:+34629995 | None:intergenic |
| ATTGCTGCCATGGGATTCTC+TGG | 0.433448 | 1_3:+34628685 | None:intergenic |
| AACTTCGTTAGCAGGATTGT+TGG | 0.434227 | 1_3:-34629647 | Msa0115690:CDS |
| CATGACTGTGGTTGTGGTCA+TGG | 0.437773 | 1_3:-34629837 | Msa0115690:CDS |
| GGCTGTCATGACTGTGGTTG+TGG | 0.441242 | 1_3:-34629843 | Msa0115690:CDS |
| GGATTGGGAACTTCGTTAGC+AGG | 0.446695 | 1_3:-34629655 | Msa0115690:CDS |
| CTTAGCTTTAGAATCTAAAA+CGG | 0.446937 | 1_3:+34628884 | None:intergenic |
| TAATGGAGCCATTGTTCAAA+GGG | 0.447359 | 1_3:-34629886 | Msa0115690:CDS |
| CAAAGGACTAAACAGAGGAT+TGG | 0.451197 | 1_3:-34629671 | Msa0115690:CDS |
| GGCTTAGCCAACTCTGTAGA+AGG | 0.451778 | 1_3:-34629143 | Msa0115690:intron |
| TCCACCATATCCAAACTTGA+AGG | 0.459404 | 1_3:-34629164 | Msa0115690:CDS |
| GCCTTCAAGTTTGGATATGG+TGG | 0.460456 | 1_3:+34629163 | None:intergenic |
| ATCAAAAGTTCTAAGGGTAA+TGG | 0.464081 | 1_3:-34628220 | Msa0115690:CDS |
| GGCAAAACTAGATCATGTTA+TGG | 0.464191 | 1_3:-34627785 | Msa0115690:CDS |
| TCGATTTACTTCCAATTACT+GGG | 0.468998 | 1_3:+34627953 | None:intergenic |
| CAAGACCAACTTTCAGAGAA+TGG | 0.469576 | 1_3:+34629936 | None:intergenic |
| TGGATATGGTGGATTTATGA+AGG | 0.471579 | 1_3:+34629174 | None:intergenic |
| GGGTAATGGCCAACAGCATA+AGG | 0.474387 | 1_3:-34628206 | Msa0115690:CDS |
| AAAGGACTAAACAGAGGATT+GGG | 0.474990 | 1_3:-34629670 | Msa0115690:CDS |
| TGCTTTCACTTCCATGCTAG+TGG | 0.483281 | 1_3:-34627815 | Msa0115690:CDS |
| AACAGGCATTGCAAGCAAGT+TGG | 0.483716 | 1_3:-34628731 | Msa0115690:intron |
| CACATTACCTTCTACAGAGT+TGG | 0.494928 | 1_3:+34629136 | None:intergenic |
| AATTATTCTGCTCCATAAGA+AGG | 0.495731 | 1_3:+34627643 | None:intergenic |
| CAACTGCACATAATGACAAC+AGG | 0.496230 | 1_3:-34628029 | Msa0115690:CDS |
| GATTTCCAGGTTTGGTGAGG+AGG | 0.505112 | 1_3:-34630000 | Msa0115690:CDS |
| ATACTCCATTCTCTGAAAGT+TGG | 0.519791 | 1_3:-34629941 | Msa0115690:CDS |
| GATCCTATCCCTTTGAACAA+TGG | 0.522592 | 1_3:+34629878 | None:intergenic |
| TTGTATTTCCAAATTGGTCA+GGG | 0.524590 | 1_3:-34629202 | Msa0115690:CDS |
| AGAAGGACAACGACAGAAGA+AGG | 0.527566 | 1_3:-34627905 | Msa0115690:CDS |
| ATTTCCAGGTTTGGTGAGGA+GGG | 0.533036 | 1_3:-34629999 | Msa0115690:CDS |
| AGAAGTATCAAAAGTTCTAA+GGG | 0.545176 | 1_3:-34628226 | Msa0115690:CDS |
| TACACTGTCGTAGCACTACA+TGG | 0.546505 | 1_3:-34628627 | Msa0115690:CDS |
| GATTGTTTGAGAGTGTTTGA+AGG | 0.549129 | 1_3:+34628166 | None:intergenic |
| TATAGATCACGGATTGACCT+TGG | 0.551863 | 1_3:+34628276 | None:intergenic |
| ATGGAAGTGAAAGCAGCAAA+GGG | 0.553411 | 1_3:+34627823 | None:intergenic |
| CTAATGGAGCCATTGTTCAA+AGG | 0.553954 | 1_3:-34629887 | Msa0115690:CDS |
| GCGATTTCAATGCATTGTCA+AGG | 0.563036 | 1_3:+34628124 | None:intergenic |
| CACTTTAGAGAGTTCAGAGA+TGG | 0.567128 | 1_3:-34627733 | Msa0115690:CDS |
| GTAGTGCTTCTGAGAACTCA+AGG | 0.568913 | 1_3:+34627845 | None:intergenic |
| AAGAATCTTTGTATAGATCA+CGG | 0.570177 | 1_3:+34628265 | None:intergenic |
| CTTGAGCCTAGTAAAAGTTG+TGG | 0.570351 | 1_3:+34628099 | None:intergenic |
| TGCCACCATCTCCACTAGCA+TGG | 0.571399 | 1_3:+34627804 | None:intergenic |
| CATGGAAGTGAAAGCAGCAA+AGG | 0.571864 | 1_3:+34627822 | None:intergenic |
| TGGCAGCAATATGCAAAAGT+AGG | 0.572216 | 1_3:-34628672 | Msa0115690:CDS |
| GATAGGATCAAATGCTATGT+GGG | 0.574841 | 1_3:-34629864 | Msa0115690:CDS |
| TCCCGAGAACAAATAAAAGA+AGG | 0.576657 | 1_3:-34627922 | Msa0115690:CDS |
| TAAAGCTAAGGATGAAACAC+TGG | 0.580961 | 1_3:-34628871 | Msa0115690:intron |
| GAGCCATTGTTCAAAGGGAT+AGG | 0.581364 | 1_3:-34629881 | Msa0115690:CDS |
| TCTACTATATGCATCGGCGT+TGG | 0.581570 | 1_3:-34629248 | Msa0115690:CDS |
| AGAGAATGGAGTATCCTTCG+TGG | 0.587636 | 1_3:+34629950 | None:intergenic |
| GGATAGGATCAAATGCTATG+TGG | 0.592083 | 1_3:-34629865 | Msa0115690:CDS |
| ATTGTTTGAGAGTGTTTGAA+GGG | 0.593546 | 1_3:+34628167 | None:intergenic |
| TAATGATGCAGCTACTGTTG+TGG | 0.595562 | 1_3:-34628982 | Msa0115690:intron |
| AAAGATTTCCAGGTTTGGTG+AGG | 0.606745 | 1_3:-34630003 | Msa0115690:CDS |
| TGTTGATAATGTCTTGAAGA+TGG | 0.607522 | 1_3:-34629285 | Msa0115690:CDS |
| GTGGTCATGGAGTTCACTGT+AGG | 0.611601 | 1_3:-34629824 | Msa0115690:intron |
| TTCCATGCTAGTGGAGATGG+TGG | 0.616449 | 1_3:-34627806 | Msa0115690:CDS |
| CGATTTACTTCCAATTACTG+GGG | 0.623538 | 1_3:+34627954 | None:intergenic |
| TCGCTCGAAATATTTGATCA+GGG | 0.624217 | 1_3:+34629596 | None:intergenic |
| CGTATCTCTACTATATGCAT+CGG | 0.629374 | 1_3:-34629254 | Msa0115690:CDS |
| AAATGAAGATGATTCATCAG+AGG | 0.647988 | 1_3:-34628931 | Msa0115690:CDS |
| TGTATTTCCAAATTGGTCAG+GGG | 0.650407 | 1_3:-34629201 | Msa0115690:CDS |
| GCAGGAGGGACTTTATCCAA+AGG | 0.661845 | 1_3:-34629688 | Msa0115690:intron |
| TTATCCAAAGGACTAAACAG+AGG | 0.684276 | 1_3:-34629676 | Msa0115690:CDS |
| CGACAGTGTAACTAAAATGG+CGG | 0.692887 | 1_3:+34628640 | None:intergenic |
| CATTGTTGTTGAAGACACCA+AGG | 0.696785 | 1_3:-34628293 | Msa0115690:intron |
| GATGCTGCCAGAGAATCCCA+TGG | 0.698745 | 1_3:-34628692 | Msa0115690:CDS |
| TATGTGGGCTGTCATGACTG+TGG | 0.700236 | 1_3:-34629849 | Msa0115690:CDS |
| TCCCATTTACAAGTGCTACG+AGG | 0.725963 | 1_3:-34628907 | Msa0115690:CDS |
| TCTTCAAGACATTATCAACA+CGG | 0.726201 | 1_3:+34629288 | None:intergenic |
| TTGGCAAAGATGATCCACGA+AGG | 0.745203 | 1_3:-34629964 | Msa0115690:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACTATTTTAAAAAATAGAA+GGG | + | chr1_3:34628922-34628941 | None:intergenic | 10.0% |
| !!! | ATACTATTTTAAAAAATAGA+AGG | + | chr1_3:34628923-34628942 | None:intergenic | 10.0% |
| !!! | TACTATTTTAAAAAATAGAA+GGG | + | chr1_3:34628922-34628941 | None:intergenic | 10.0% |
| !!! | ATACTATTTTAAAAAATAGA+AGG | + | chr1_3:34628923-34628942 | None:intergenic | 10.0% |
| !! | AATGGTTAAGAAAAATATTT+AGG | + | chr1_3:34628287-34628306 | None:intergenic | 15.0% |
| !!! | AATAGTCTACATTATTTTAT+TGG | - | chr1_3:34629307-34629326 | Msa0115690:CDS | 15.0% |
| !!! | AGAGTTATATTTTATACTAA+AGG | + | chr1_3:34629360-34629379 | None:intergenic | 15.0% |
| !!! | TTATCAACTATATTGATTTT+CGG | + | chr1_3:34630051-34630070 | None:intergenic | 15.0% |
| !! | AATGGTTAAGAAAAATATTT+AGG | + | chr1_3:34628287-34628306 | None:intergenic | 15.0% |
| !!! | AATAGTCTACATTATTTTAT+TGG | - | chr1_3:34629307-34629326 | Msa0115690:CDS | 15.0% |
| !!! | AGAGTTATATTTTATACTAA+AGG | + | chr1_3:34629360-34629379 | None:intergenic | 15.0% |
| !!! | TTATCAACTATATTGATTTT+CGG | + | chr1_3:34630051-34630070 | None:intergenic | 15.0% |
| !! | TCATAATTCTTCTTGATATA+GGG | + | chr1_3:34628359-34628378 | None:intergenic | 20.0% |
| !! | CGATACAATTATCAAATTAA+AGG | + | chr1_3:34628408-34628427 | None:intergenic | 20.0% |
| !! | TACTTTACTTGACAAAAAAA+GGG | + | chr1_3:34628887-34628906 | None:intergenic | 20.0% |
| !! | TTAAATAGTACGTAAGTTAA+AGG | + | chr1_3:34629406-34629425 | None:intergenic | 20.0% |
| !!! | ATGATAATTTTACTAAGTTG+TGG | + | chr1_3:34629850-34629869 | None:intergenic | 20.0% |
| !! | TCATAATTCTTCTTGATATA+GGG | + | chr1_3:34628359-34628378 | None:intergenic | 20.0% |
| !! | CGATACAATTATCAAATTAA+AGG | + | chr1_3:34628408-34628427 | None:intergenic | 20.0% |
| !! | TACTTTACTTGACAAAAAAA+GGG | + | chr1_3:34628887-34628906 | None:intergenic | 20.0% |
| !! | TTAAATAGTACGTAAGTTAA+AGG | + | chr1_3:34629406-34629425 | None:intergenic | 20.0% |
| !!! | ATGATAATTTTACTAAGTTG+TGG | + | chr1_3:34629850-34629869 | None:intergenic | 20.0% |
| !! | TGTATCTTTGTTGTATCTAA+TGG | - | chr1_3:34627818-34627837 | Msa0115690:CDS | 25.0% |
| ! | TGTTTATATCACAATCTCAT+AGG | - | chr1_3:34627989-34628008 | Msa0115690:CDS | 25.0% |
| !! | TTTAAGAGAAGCTTAATTTG+TGG | - | chr1_3:34628252-34628271 | Msa0115690:CDS | 25.0% |
| ! | GTCATAATTCTTCTTGATAT+AGG | + | chr1_3:34628360-34628379 | None:intergenic | 25.0% |
| ! | ATCAAGAAGAATTATGACTA+TGG | - | chr1_3:34628362-34628381 | Msa0115690:intron | 25.0% |
| ! | GTCTATTTGTATTTCCAAAT+TGG | - | chr1_3:34628513-34628532 | Msa0115690:intron | 25.0% |
| ! | AGCAATATTCTATAATGAAG+TGG | + | chr1_3:34628619-34628638 | None:intergenic | 25.0% |
| !!! | CTTAGCTTTAGAATCTAAAA+CGG | + | chr1_3:34628840-34628859 | None:intergenic | 25.0% |
| ! | ACTTTACTTGACAAAAAAAG+GGG | + | chr1_3:34628886-34628905 | None:intergenic | 25.0% |
| ! | GTACTTTACTTGACAAAAAA+AGG | + | chr1_3:34628888-34628907 | None:intergenic | 25.0% |
| ! | AATAACATGACAGATAATCT+AGG | + | chr1_3:34629177-34629196 | None:intergenic | 25.0% |
| ! | ATTGATTAAGATCTATATGC+AGG | - | chr1_3:34629234-34629253 | Msa0115690:CDS | 25.0% |
| ! | AAGAATCTTTGTATAGATCA+CGG | + | chr1_3:34629459-34629478 | None:intergenic | 25.0% |
| !!! | AAGAAGTATCAAAAGTTCTA+AGG | - | chr1_3:34629494-34629513 | Msa0115690:intron | 25.0% |
| !!! | AGAAGTATCAAAAGTTCTAA+GGG | - | chr1_3:34629495-34629514 | Msa0115690:intron | 25.0% |
| ! | TATGGATAAAGTTGAAGAAT+TGG | - | chr1_3:34629954-34629973 | Msa0115690:CDS | 25.0% |
| ! | ATGGATAAAGTTGAAGAATT+GGG | - | chr1_3:34629955-34629974 | Msa0115690:CDS | 25.0% |
| !! | TGTATCTTTGTTGTATCTAA+TGG | - | chr1_3:34627818-34627837 | Msa0115690:CDS | 25.0% |
| ! | TGTTTATATCACAATCTCAT+AGG | - | chr1_3:34627989-34628008 | Msa0115690:CDS | 25.0% |
| !! | TTTAAGAGAAGCTTAATTTG+TGG | - | chr1_3:34628252-34628271 | Msa0115690:CDS | 25.0% |
| ! | GTCATAATTCTTCTTGATAT+AGG | + | chr1_3:34628360-34628379 | None:intergenic | 25.0% |
| ! | ATCAAGAAGAATTATGACTA+TGG | - | chr1_3:34628362-34628381 | Msa0115690:intron | 25.0% |
| ! | GTCTATTTGTATTTCCAAAT+TGG | - | chr1_3:34628513-34628532 | Msa0115690:intron | 25.0% |
| ! | AGCAATATTCTATAATGAAG+TGG | + | chr1_3:34628619-34628638 | None:intergenic | 25.0% |
| !!! | CTTAGCTTTAGAATCTAAAA+CGG | + | chr1_3:34628840-34628859 | None:intergenic | 25.0% |
| ! | ACTTTACTTGACAAAAAAAG+GGG | + | chr1_3:34628886-34628905 | None:intergenic | 25.0% |
| ! | GTACTTTACTTGACAAAAAA+AGG | + | chr1_3:34628888-34628907 | None:intergenic | 25.0% |
| ! | AATAACATGACAGATAATCT+AGG | + | chr1_3:34629177-34629196 | None:intergenic | 25.0% |
| ! | ATTGATTAAGATCTATATGC+AGG | - | chr1_3:34629234-34629253 | Msa0115690:CDS | 25.0% |
| ! | AAGAATCTTTGTATAGATCA+CGG | + | chr1_3:34629459-34629478 | None:intergenic | 25.0% |
| !!! | AAGAAGTATCAAAAGTTCTA+AGG | - | chr1_3:34629494-34629513 | Msa0115690:intron | 25.0% |
| !!! | AGAAGTATCAAAAGTTCTAA+GGG | - | chr1_3:34629495-34629514 | Msa0115690:intron | 25.0% |
| ! | TATGGATAAAGTTGAAGAAT+TGG | - | chr1_3:34629954-34629973 | Msa0115690:CDS | 25.0% |
| ! | ATGGATAAAGTTGAAGAATT+GGG | - | chr1_3:34629955-34629974 | Msa0115690:CDS | 25.0% |
| TGAGCATTTCTTAGTATTGT+TGG | + | chr1_3:34627658-34627677 | None:intergenic | 30.0% | |
| GATAAAGTGAAAAGATTTCC+AGG | - | chr1_3:34627708-34627727 | Msa0115690:CDS | 30.0% | |
| TCACAATCTCATAGGTATTA+AGG | - | chr1_3:34627997-34628016 | Msa0115690:CDS | 30.0% | |
| ! | ATATTTCGAGCGATTTTCAT+TGG | - | chr1_3:34628135-34628154 | Msa0115690:CDS | 30.0% |
| CTTACCTAAAAGAAAAACAG+CGG | + | chr1_3:34628163-34628182 | None:intergenic | 30.0% | |
| GGTAAGCATTTATTACATCA+TGG | - | chr1_3:34628177-34628196 | Msa0115690:CDS | 30.0% | |
| ! | GAATTATGACTATGGTGTTA+TGG | - | chr1_3:34628370-34628389 | Msa0115690:intron | 30.0% |
| TCTTCAAGACATTATCAACA+CGG | + | chr1_3:34628436-34628455 | None:intergenic | 30.0% | |
| !! | TGTTGATAATGTCTTGAAGA+TGG | - | chr1_3:34628436-34628455 | Msa0115690:intron | 30.0% |
| TTTGTATTTCCAAATTGGTC+AGG | - | chr1_3:34628518-34628537 | Msa0115690:intron | 30.0% | |
| TTGTATTTCCAAATTGGTCA+GGG | - | chr1_3:34628519-34628538 | Msa0115690:intron | 30.0% | |
| GTCTCAATCTATATAAGTGA+TGG | - | chr1_3:34628710-34628729 | Msa0115690:CDS | 30.0% | |
| AAATGAAGATGATTCATCAG+AGG | - | chr1_3:34628790-34628809 | Msa0115690:intron | 30.0% | |
| !!! | CGTTTTAGATTCTAAAGCTA+AGG | - | chr1_3:34628838-34628857 | Msa0115690:intron | 30.0% |
| TTTGTCAAGTAAAGTACACT+AGG | - | chr1_3:34628891-34628910 | Msa0115690:CDS | 30.0% | |
| ! | CTTACAGTGTTGAATTAAAC+AGG | - | chr1_3:34628973-34628992 | Msa0115690:CDS | 30.0% |
| TACTAAATCAGCTATCGATA+AGG | - | chr1_3:34629140-34629159 | Msa0115690:intron | 30.0% | |
| ! | GTCATGTTATTGATAGTACA+TGG | - | chr1_3:34629186-34629205 | Msa0115690:CDS | 30.0% |
| GCTAGCATCTTCATAATTAT+TGG | - | chr1_3:34629329-34629348 | Msa0115690:CDS | 30.0% | |
| !! | ATCAAAAGTTCTAAGGGTAA+TGG | - | chr1_3:34629501-34629520 | Msa0115690:intron | 30.0% |
| !! | ATTGTTTGAGAGTGTTTGAA+GGG | + | chr1_3:34629557-34629576 | None:intergenic | 30.0% |
| !! | TTGCTTTAGTTGATGTTTTG+GGG | + | chr1_3:34629675-34629694 | None:intergenic | 30.0% |
| !! | GTTGCTTTAGTTGATGTTTT+GGG | + | chr1_3:34629676-34629695 | None:intergenic | 30.0% |
| !! | AGTTGCTTTAGTTGATGTTT+TGG | + | chr1_3:34629677-34629696 | None:intergenic | 30.0% |
| TCGATTTACTTCCAATTACT+GGG | + | chr1_3:34629771-34629790 | None:intergenic | 30.0% | |
| TTCGATTTACTTCCAATTAC+TGG | + | chr1_3:34629772-34629791 | None:intergenic | 30.0% | |
| !! | TCCTTCTTTTATTTGTTCTC+GGG | + | chr1_3:34629803-34629822 | None:intergenic | 30.0% |
| !! | GTCCTTCTTTTATTTGTTCT+CGG | + | chr1_3:34629804-34629823 | None:intergenic | 30.0% |
| TGAGCATTTCTTAGTATTGT+TGG | + | chr1_3:34627658-34627677 | None:intergenic | 30.0% | |
| GATAAAGTGAAAAGATTTCC+AGG | - | chr1_3:34627708-34627727 | Msa0115690:CDS | 30.0% | |
| TCACAATCTCATAGGTATTA+AGG | - | chr1_3:34627997-34628016 | Msa0115690:CDS | 30.0% | |
| ! | ATATTTCGAGCGATTTTCAT+TGG | - | chr1_3:34628135-34628154 | Msa0115690:CDS | 30.0% |
| CTTACCTAAAAGAAAAACAG+CGG | + | chr1_3:34628163-34628182 | None:intergenic | 30.0% | |
| GGTAAGCATTTATTACATCA+TGG | - | chr1_3:34628177-34628196 | Msa0115690:CDS | 30.0% | |
| ! | GAATTATGACTATGGTGTTA+TGG | - | chr1_3:34628370-34628389 | Msa0115690:intron | 30.0% |
| TCTTCAAGACATTATCAACA+CGG | + | chr1_3:34628436-34628455 | None:intergenic | 30.0% | |
| !! | TGTTGATAATGTCTTGAAGA+TGG | - | chr1_3:34628436-34628455 | Msa0115690:intron | 30.0% |
| TTTGTATTTCCAAATTGGTC+AGG | - | chr1_3:34628518-34628537 | Msa0115690:intron | 30.0% | |
| TTGTATTTCCAAATTGGTCA+GGG | - | chr1_3:34628519-34628538 | Msa0115690:intron | 30.0% | |
| GTCTCAATCTATATAAGTGA+TGG | - | chr1_3:34628710-34628729 | Msa0115690:CDS | 30.0% | |
| AAATGAAGATGATTCATCAG+AGG | - | chr1_3:34628790-34628809 | Msa0115690:intron | 30.0% | |
| !!! | CGTTTTAGATTCTAAAGCTA+AGG | - | chr1_3:34628838-34628857 | Msa0115690:intron | 30.0% |
| TTTGTCAAGTAAAGTACACT+AGG | - | chr1_3:34628891-34628910 | Msa0115690:CDS | 30.0% | |
| ! | CTTACAGTGTTGAATTAAAC+AGG | - | chr1_3:34628973-34628992 | Msa0115690:CDS | 30.0% |
| TACTAAATCAGCTATCGATA+AGG | - | chr1_3:34629140-34629159 | Msa0115690:intron | 30.0% | |
| ! | GTCATGTTATTGATAGTACA+TGG | - | chr1_3:34629186-34629205 | Msa0115690:CDS | 30.0% |
| GCTAGCATCTTCATAATTAT+TGG | - | chr1_3:34629329-34629348 | Msa0115690:CDS | 30.0% | |
| !! | ATCAAAAGTTCTAAGGGTAA+TGG | - | chr1_3:34629501-34629520 | Msa0115690:intron | 30.0% |
| !! | ATTGTTTGAGAGTGTTTGAA+GGG | + | chr1_3:34629557-34629576 | None:intergenic | 30.0% |
| !! | TTGCTTTAGTTGATGTTTTG+GGG | + | chr1_3:34629675-34629694 | None:intergenic | 30.0% |
| !! | GTTGCTTTAGTTGATGTTTT+GGG | + | chr1_3:34629676-34629695 | None:intergenic | 30.0% |
| !! | AGTTGCTTTAGTTGATGTTT+TGG | + | chr1_3:34629677-34629696 | None:intergenic | 30.0% |
| TCGATTTACTTCCAATTACT+GGG | + | chr1_3:34629771-34629790 | None:intergenic | 30.0% | |
| TTCGATTTACTTCCAATTAC+TGG | + | chr1_3:34629772-34629791 | None:intergenic | 30.0% | |
| !! | TCCTTCTTTTATTTGTTCTC+GGG | + | chr1_3:34629803-34629822 | None:intergenic | 30.0% |
| !! | GTCCTTCTTTTATTTGTTCT+CGG | + | chr1_3:34629804-34629823 | None:intergenic | 30.0% |
| CTAAGAAATGCTCAAGTCAT+TGG | - | chr1_3:34627664-34627683 | Msa0115690:CDS | 35.0% | |
| AGTGAAAAGATTTCCAGGTT+TGG | - | chr1_3:34627713-34627732 | Msa0115690:CDS | 35.0% | |
| ! | ATACTCCATTCTCTGAAAGT+TGG | - | chr1_3:34627780-34627799 | Msa0115690:CDS | 35.0% |
| TAATGGAGCCATTGTTCAAA+GGG | - | chr1_3:34627835-34627854 | Msa0115690:CDS | 35.0% | |
| GATAGGATCAAATGCTATGT+GGG | - | chr1_3:34627857-34627876 | Msa0115690:CDS | 35.0% | |
| TAAGGATCAGTTATGATTGC+AGG | - | chr1_3:34628015-34628034 | Msa0115690:CDS | 35.0% | |
| TTATCCAAAGGACTAAACAG+AGG | - | chr1_3:34628045-34628064 | Msa0115690:CDS | 35.0% | |
| AAAGGACTAAACAGAGGATT+GGG | - | chr1_3:34628051-34628070 | Msa0115690:CDS | 35.0% | |
| TCGCTCGAAATATTTGATCA+GGG | + | chr1_3:34628128-34628147 | None:intergenic | 35.0% | |
| ATCGCTCGAAATATTTGATC+AGG | + | chr1_3:34628129-34628148 | None:intergenic | 35.0% | |
| GCAAACAAACAGTGAAACAA+TGG | + | chr1_3:34628305-34628324 | None:intergenic | 35.0% | |
| TTGTTTCACTGTTTGTTTGC+AGG | - | chr1_3:34628305-34628324 | Msa0115690:intron | 35.0% | |
| CGTATCTCTACTATATGCAT+CGG | - | chr1_3:34628467-34628486 | Msa0115690:intron | 35.0% | |
| TGTATTTCCAAATTGGTCAG+GGG | - | chr1_3:34628520-34628539 | Msa0115690:intron | 35.0% | |
| !! | TGGATATGGTGGATTTATGA+AGG | + | chr1_3:34628550-34628569 | None:intergenic | 35.0% |
| ! | TAAGCCTTCAAGTTTGGATA+TGG | + | chr1_3:34628564-34628583 | None:intergenic | 35.0% |
| TAAAGCTAAGGATGAAACAC+TGG | - | chr1_3:34628850-34628869 | Msa0115690:intron | 35.0% | |
| CTACGACAGTGTAACTAAAA+TGG | + | chr1_3:34629087-34629106 | None:intergenic | 35.0% | |
| ATGTTTGCAGTCAGAAATTC+AGG | - | chr1_3:34629117-34629136 | Msa0115690:intron | 35.0% | |
| CAGGCTTATAATGATTGTCA+GGG | - | chr1_3:34629253-34629272 | Msa0115690:CDS | 35.0% | |
| ! | TTGGTGTCTTCAACAACAAT+GGG | + | chr1_3:34629429-34629448 | None:intergenic | 35.0% |
| !!! | ATGCTTTTTCCTTATGCTGT+TGG | + | chr1_3:34629527-34629546 | None:intergenic | 35.0% |
| !! | GATTGTTTGAGAGTGTTTGA+AGG | + | chr1_3:34629558-34629577 | None:intergenic | 35.0% |
| !! | TGCTTTAGTTGATGTTTTGG+GGG | + | chr1_3:34629674-34629693 | None:intergenic | 35.0% |
| CGATTTACTTCCAATTACTG+GGG | + | chr1_3:34629770-34629789 | None:intergenic | 35.0% | |
| TCCCGAGAACAAATAAAAGA+AGG | - | chr1_3:34629799-34629818 | Msa0115690:intron | 35.0% | |
| GGCAAAACTAGATCATGTTA+TGG | - | chr1_3:34629936-34629955 | Msa0115690:CDS | 35.0% | |
| ! | GATAATGACTTGCCTTCTTA+TGG | - | chr1_3:34630066-34630085 | Msa0115690:CDS | 35.0% |
| CTAAGAAATGCTCAAGTCAT+TGG | - | chr1_3:34627664-34627683 | Msa0115690:CDS | 35.0% | |
| AGTGAAAAGATTTCCAGGTT+TGG | - | chr1_3:34627713-34627732 | Msa0115690:CDS | 35.0% | |
| ! | ATACTCCATTCTCTGAAAGT+TGG | - | chr1_3:34627780-34627799 | Msa0115690:CDS | 35.0% |
| TAATGGAGCCATTGTTCAAA+GGG | - | chr1_3:34627835-34627854 | Msa0115690:CDS | 35.0% | |
| GATAGGATCAAATGCTATGT+GGG | - | chr1_3:34627857-34627876 | Msa0115690:CDS | 35.0% | |
| TAAGGATCAGTTATGATTGC+AGG | - | chr1_3:34628015-34628034 | Msa0115690:CDS | 35.0% | |
| TTATCCAAAGGACTAAACAG+AGG | - | chr1_3:34628045-34628064 | Msa0115690:CDS | 35.0% | |
| AAAGGACTAAACAGAGGATT+GGG | - | chr1_3:34628051-34628070 | Msa0115690:CDS | 35.0% | |
| TCGCTCGAAATATTTGATCA+GGG | + | chr1_3:34628128-34628147 | None:intergenic | 35.0% | |
| ATCGCTCGAAATATTTGATC+AGG | + | chr1_3:34628129-34628148 | None:intergenic | 35.0% | |
| GCAAACAAACAGTGAAACAA+TGG | + | chr1_3:34628305-34628324 | None:intergenic | 35.0% | |
| TTGTTTCACTGTTTGTTTGC+AGG | - | chr1_3:34628305-34628324 | Msa0115690:intron | 35.0% | |
| CGTATCTCTACTATATGCAT+CGG | - | chr1_3:34628467-34628486 | Msa0115690:intron | 35.0% | |
| TGTATTTCCAAATTGGTCAG+GGG | - | chr1_3:34628520-34628539 | Msa0115690:intron | 35.0% | |
| !! | TGGATATGGTGGATTTATGA+AGG | + | chr1_3:34628550-34628569 | None:intergenic | 35.0% |
| ! | TAAGCCTTCAAGTTTGGATA+TGG | + | chr1_3:34628564-34628583 | None:intergenic | 35.0% |
| TAAAGCTAAGGATGAAACAC+TGG | - | chr1_3:34628850-34628869 | Msa0115690:intron | 35.0% | |
| CTACGACAGTGTAACTAAAA+TGG | + | chr1_3:34629087-34629106 | None:intergenic | 35.0% | |
| ATGTTTGCAGTCAGAAATTC+AGG | - | chr1_3:34629117-34629136 | Msa0115690:intron | 35.0% | |
| CAGGCTTATAATGATTGTCA+GGG | - | chr1_3:34629253-34629272 | Msa0115690:CDS | 35.0% | |
| ! | TTGGTGTCTTCAACAACAAT+GGG | + | chr1_3:34629429-34629448 | None:intergenic | 35.0% |
| !!! | ATGCTTTTTCCTTATGCTGT+TGG | + | chr1_3:34629527-34629546 | None:intergenic | 35.0% |
| !! | GATTGTTTGAGAGTGTTTGA+AGG | + | chr1_3:34629558-34629577 | None:intergenic | 35.0% |
| !! | TGCTTTAGTTGATGTTTTGG+GGG | + | chr1_3:34629674-34629693 | None:intergenic | 35.0% |
| CGATTTACTTCCAATTACTG+GGG | + | chr1_3:34629770-34629789 | None:intergenic | 35.0% | |
| TCCCGAGAACAAATAAAAGA+AGG | - | chr1_3:34629799-34629818 | Msa0115690:intron | 35.0% | |
| GGCAAAACTAGATCATGTTA+TGG | - | chr1_3:34629936-34629955 | Msa0115690:CDS | 35.0% | |
| ! | GATAATGACTTGCCTTCTTA+TGG | - | chr1_3:34630066-34630085 | Msa0115690:CDS | 35.0% |
| !! | AAAGATTTCCAGGTTTGGTG+AGG | - | chr1_3:34627718-34627737 | Msa0115690:CDS | 40.0% |
| AGGAGGGAAATTTGGAAAGT+TGG | - | chr1_3:34627738-34627757 | Msa0115690:CDS | 40.0% | |
| CAAGACCAACTTTCAGAGAA+TGG | + | chr1_3:34627788-34627807 | None:intergenic | 40.0% | |
| CTAATGGAGCCATTGTTCAA+AGG | - | chr1_3:34627834-34627853 | Msa0115690:CDS | 40.0% | |
| GATCCTATCCCTTTGAACAA+TGG | + | chr1_3:34627846-34627865 | None:intergenic | 40.0% | |
| GGATAGGATCAAATGCTATG+TGG | - | chr1_3:34627856-34627875 | Msa0115690:CDS | 40.0% | |
| GATCAGTTATGATTGCAGGA+GGG | - | chr1_3:34628019-34628038 | Msa0115690:CDS | 40.0% | |
| CAATCCTCTGTTTAGTCCTT+TGG | + | chr1_3:34628052-34628071 | None:intergenic | 40.0% | |
| CAAAGGACTAAACAGAGGAT+TGG | - | chr1_3:34628050-34628069 | Msa0115690:CDS | 40.0% | |
| AACTTCGTTAGCAGGATTGT+TGG | - | chr1_3:34628074-34628093 | Msa0115690:CDS | 40.0% | |
| !! | AGAGAAGCTTAATTTGTGGC+TGG | - | chr1_3:34628256-34628275 | Msa0115690:CDS | 40.0% |
| TCCACCATATCCAAACTTGA+AGG | - | chr1_3:34628557-34628576 | Msa0115690:intron | 40.0% | |
| CACATTACCTTCTACAGAGT+TGG | + | chr1_3:34628588-34628607 | None:intergenic | 40.0% | |
| TCTATAATGAAGTGGTGACC+TGG | + | chr1_3:34628611-34628630 | None:intergenic | 40.0% | |
| TAATGATGCAGCTACTGTTG+TGG | - | chr1_3:34628739-34628758 | Msa0115690:intron | 40.0% | |
| ACTTGACAAAAAAAGGGGCA+TGG | + | chr1_3:34628881-34628900 | None:intergenic | 40.0% | |
| ! | CTTTTGCATATTGCTGCCAT+GGG | + | chr1_3:34629048-34629067 | None:intergenic | 40.0% |
| ! | ACTTTTGCATATTGCTGCCA+TGG | + | chr1_3:34629049-34629068 | None:intergenic | 40.0% |
| TGGCAGCAATATGCAAAAGT+AGG | - | chr1_3:34629049-34629068 | Msa0115690:intron | 40.0% | |
| CGACAGTGTAACTAAAATGG+CGG | + | chr1_3:34629084-34629103 | None:intergenic | 40.0% | |
| GCAGGCTTATAATGATTGTC+AGG | - | chr1_3:34629252-34629271 | Msa0115690:CDS | 40.0% | |
| !! | CTTGGTGTCTTCAACAACAA+TGG | + | chr1_3:34629430-34629449 | None:intergenic | 40.0% |
| ! | CATTGTTGTTGAAGACACCA+AGG | - | chr1_3:34629428-34629447 | Msa0115690:intron | 40.0% |
| ! | TATAGATCACGGATTGACCT+TGG | + | chr1_3:34629448-34629467 | None:intergenic | 40.0% |
| GCGATTTCAATGCATTGTCA+AGG | + | chr1_3:34629600-34629619 | None:intergenic | 40.0% | |
| ! | TCGCAACCACAACTTTTACT+AGG | - | chr1_3:34629616-34629635 | Msa0115690:CDS | 40.0% |
| CTTGAGCCTAGTAAAAGTTG+TGG | + | chr1_3:34629625-34629644 | None:intergenic | 40.0% | |
| ! | CACAACTTTTACTAGGCTCA+AGG | - | chr1_3:34629623-34629642 | Msa0115690:CDS | 40.0% |
| !!! | TTGATGTTTTGGGGGTTATG+GGG | + | chr1_3:34629666-34629685 | None:intergenic | 40.0% |
| !!! | GTTGATGTTTTGGGGGTTAT+GGG | + | chr1_3:34629667-34629686 | None:intergenic | 40.0% |
| !!! | AGTTGATGTTTTGGGGGTTA+TGG | + | chr1_3:34629668-34629687 | None:intergenic | 40.0% |
| CAACTGCACATAATGACAAC+AGG | - | chr1_3:34629692-34629711 | Msa0115690:intron | 40.0% | |
| ! | GATTGTTGTTCCCCAGTAAT+TGG | - | chr1_3:34629757-34629776 | Msa0115690:intron | 40.0% |
| ! | AACGACAGAAGAAGGTTTTG+AGG | - | chr1_3:34629824-34629843 | Msa0115690:intron | 40.0% |
| ATGGAAGTGAAAGCAGCAAA+GGG | + | chr1_3:34629901-34629920 | None:intergenic | 40.0% | |
| ! | CACTTTAGAGAGTTCAGAGA+TGG | - | chr1_3:34629988-34630007 | Msa0115690:CDS | 40.0% |
| !! | AAAGATTTCCAGGTTTGGTG+AGG | - | chr1_3:34627718-34627737 | Msa0115690:CDS | 40.0% |
| AGGAGGGAAATTTGGAAAGT+TGG | - | chr1_3:34627738-34627757 | Msa0115690:CDS | 40.0% | |
| CAAGACCAACTTTCAGAGAA+TGG | + | chr1_3:34627788-34627807 | None:intergenic | 40.0% | |
| CTAATGGAGCCATTGTTCAA+AGG | - | chr1_3:34627834-34627853 | Msa0115690:CDS | 40.0% | |
| GATCCTATCCCTTTGAACAA+TGG | + | chr1_3:34627846-34627865 | None:intergenic | 40.0% | |
| GGATAGGATCAAATGCTATG+TGG | - | chr1_3:34627856-34627875 | Msa0115690:CDS | 40.0% | |
| GATCAGTTATGATTGCAGGA+GGG | - | chr1_3:34628019-34628038 | Msa0115690:CDS | 40.0% | |
| CAATCCTCTGTTTAGTCCTT+TGG | + | chr1_3:34628052-34628071 | None:intergenic | 40.0% | |
| CAAAGGACTAAACAGAGGAT+TGG | - | chr1_3:34628050-34628069 | Msa0115690:CDS | 40.0% | |
| AACTTCGTTAGCAGGATTGT+TGG | - | chr1_3:34628074-34628093 | Msa0115690:CDS | 40.0% | |
| !! | AGAGAAGCTTAATTTGTGGC+TGG | - | chr1_3:34628256-34628275 | Msa0115690:CDS | 40.0% |
| TCCACCATATCCAAACTTGA+AGG | - | chr1_3:34628557-34628576 | Msa0115690:intron | 40.0% | |
| CACATTACCTTCTACAGAGT+TGG | + | chr1_3:34628588-34628607 | None:intergenic | 40.0% | |
| TCTATAATGAAGTGGTGACC+TGG | + | chr1_3:34628611-34628630 | None:intergenic | 40.0% | |
| TAATGATGCAGCTACTGTTG+TGG | - | chr1_3:34628739-34628758 | Msa0115690:intron | 40.0% | |
| ACTTGACAAAAAAAGGGGCA+TGG | + | chr1_3:34628881-34628900 | None:intergenic | 40.0% | |
| ! | CTTTTGCATATTGCTGCCAT+GGG | + | chr1_3:34629048-34629067 | None:intergenic | 40.0% |
| ! | ACTTTTGCATATTGCTGCCA+TGG | + | chr1_3:34629049-34629068 | None:intergenic | 40.0% |
| TGGCAGCAATATGCAAAAGT+AGG | - | chr1_3:34629049-34629068 | Msa0115690:intron | 40.0% | |
| CGACAGTGTAACTAAAATGG+CGG | + | chr1_3:34629084-34629103 | None:intergenic | 40.0% | |
| GCAGGCTTATAATGATTGTC+AGG | - | chr1_3:34629252-34629271 | Msa0115690:CDS | 40.0% | |
| !! | CTTGGTGTCTTCAACAACAA+TGG | + | chr1_3:34629430-34629449 | None:intergenic | 40.0% |
| ! | CATTGTTGTTGAAGACACCA+AGG | - | chr1_3:34629428-34629447 | Msa0115690:intron | 40.0% |
| ! | TATAGATCACGGATTGACCT+TGG | + | chr1_3:34629448-34629467 | None:intergenic | 40.0% |
| GCGATTTCAATGCATTGTCA+AGG | + | chr1_3:34629600-34629619 | None:intergenic | 40.0% | |
| ! | TCGCAACCACAACTTTTACT+AGG | - | chr1_3:34629616-34629635 | Msa0115690:CDS | 40.0% |
| CTTGAGCCTAGTAAAAGTTG+TGG | + | chr1_3:34629625-34629644 | None:intergenic | 40.0% | |
| ! | CACAACTTTTACTAGGCTCA+AGG | - | chr1_3:34629623-34629642 | Msa0115690:CDS | 40.0% |
| !!! | TTGATGTTTTGGGGGTTATG+GGG | + | chr1_3:34629666-34629685 | None:intergenic | 40.0% |
| !!! | GTTGATGTTTTGGGGGTTAT+GGG | + | chr1_3:34629667-34629686 | None:intergenic | 40.0% |
| !!! | AGTTGATGTTTTGGGGGTTA+TGG | + | chr1_3:34629668-34629687 | None:intergenic | 40.0% |
| CAACTGCACATAATGACAAC+AGG | - | chr1_3:34629692-34629711 | Msa0115690:intron | 40.0% | |
| ! | GATTGTTGTTCCCCAGTAAT+TGG | - | chr1_3:34629757-34629776 | Msa0115690:intron | 40.0% |
| ! | AACGACAGAAGAAGGTTTTG+AGG | - | chr1_3:34629824-34629843 | Msa0115690:intron | 40.0% |
| ATGGAAGTGAAAGCAGCAAA+GGG | + | chr1_3:34629901-34629920 | None:intergenic | 40.0% | |
| ! | CACTTTAGAGAGTTCAGAGA+TGG | - | chr1_3:34629988-34630007 | Msa0115690:CDS | 40.0% |
| !! | ATTTCCAGGTTTGGTGAGGA+GGG | - | chr1_3:34627722-34627741 | Msa0115690:CDS | 45.0% |
| ! | GTTTGGTGAGGAGGGAAATT+TGG | - | chr1_3:34627730-34627749 | Msa0115690:CDS | 45.0% |
| TTGGCAAAGATGATCCACGA+AGG | - | chr1_3:34627757-34627776 | Msa0115690:CDS | 45.0% | |
| ! | AGAGAATGGAGTATCCTTCG+TGG | + | chr1_3:34627774-34627793 | None:intergenic | 45.0% |
| GAGCCATTGTTCAAAGGGAT+AGG | - | chr1_3:34627840-34627859 | Msa0115690:CDS | 45.0% | |
| GGAGTTCACTGTAGGTAAAC+AGG | - | chr1_3:34627905-34627924 | Msa0115690:CDS | 45.0% | |
| GGATCAGTTATGATTGCAGG+AGG | - | chr1_3:34628018-34628037 | Msa0115690:CDS | 45.0% | |
| !!! | GGAGCCGCTGTTTTTCTTTT+AGG | - | chr1_3:34628156-34628175 | Msa0115690:CDS | 45.0% |
| ! | TCTACTATATGCATCGGCGT+TGG | - | chr1_3:34628473-34628492 | Msa0115690:intron | 45.0% |
| ! | GCCTTCAAGTTTGGATATGG+TGG | + | chr1_3:34628561-34628580 | None:intergenic | 45.0% |
| ! | GTTGGCTAAGCCTTCAAGTT+TGG | + | chr1_3:34628570-34628589 | None:intergenic | 45.0% |
| TCTGTAGAAGGTAATGTGCC+AGG | - | chr1_3:34628590-34628609 | Msa0115690:intron | 45.0% | |
| TCCCATTTACAAGTGCTACG+AGG | - | chr1_3:34628814-34628833 | Msa0115690:intron | 45.0% | |
| GCCTCGTAGCACTTGTAAAT+GGG | + | chr1_3:34628818-34628837 | None:intergenic | 45.0% | |
| ! | AACAGGCATTGCAAGCAAGT+TGG | - | chr1_3:34628990-34629009 | Msa0115690:intron | 45.0% |
| ! | ACAGGCATTGCAAGCAAGTT+GGG | - | chr1_3:34628991-34629010 | Msa0115690:intron | 45.0% |
| TGGCAGCATCTTGAGTATCT+TGG | + | chr1_3:34629019-34629038 | None:intergenic | 45.0% | |
| TACACTGTCGTAGCACTACA+TGG | - | chr1_3:34629094-34629113 | Msa0115690:intron | 45.0% | |
| !!! | TGATGTTTTGGGGGTTATGG+GGG | + | chr1_3:34629665-34629684 | None:intergenic | 45.0% |
| AGAAGGACAACGACAGAAGA+AGG | - | chr1_3:34629816-34629835 | Msa0115690:intron | 45.0% | |
| ! | GTAGTGCTTCTGAGAACTCA+AGG | + | chr1_3:34629879-34629898 | None:intergenic | 45.0% |
| CATGGAAGTGAAAGCAGCAA+AGG | + | chr1_3:34629902-34629921 | None:intergenic | 45.0% | |
| TGCTTTCACTTCCATGCTAG+TGG | - | chr1_3:34629906-34629925 | Msa0115690:CDS | 45.0% | |
| !! | ATTTCCAGGTTTGGTGAGGA+GGG | - | chr1_3:34627722-34627741 | Msa0115690:CDS | 45.0% |
| ! | GTTTGGTGAGGAGGGAAATT+TGG | - | chr1_3:34627730-34627749 | Msa0115690:CDS | 45.0% |
| TTGGCAAAGATGATCCACGA+AGG | - | chr1_3:34627757-34627776 | Msa0115690:CDS | 45.0% | |
| ! | AGAGAATGGAGTATCCTTCG+TGG | + | chr1_3:34627774-34627793 | None:intergenic | 45.0% |
| GAGCCATTGTTCAAAGGGAT+AGG | - | chr1_3:34627840-34627859 | Msa0115690:CDS | 45.0% | |
| GGAGTTCACTGTAGGTAAAC+AGG | - | chr1_3:34627905-34627924 | Msa0115690:CDS | 45.0% | |
| GGATCAGTTATGATTGCAGG+AGG | - | chr1_3:34628018-34628037 | Msa0115690:CDS | 45.0% | |
| !!! | GGAGCCGCTGTTTTTCTTTT+AGG | - | chr1_3:34628156-34628175 | Msa0115690:CDS | 45.0% |
| ! | TCTACTATATGCATCGGCGT+TGG | - | chr1_3:34628473-34628492 | Msa0115690:intron | 45.0% |
| ! | GCCTTCAAGTTTGGATATGG+TGG | + | chr1_3:34628561-34628580 | None:intergenic | 45.0% |
| ! | GTTGGCTAAGCCTTCAAGTT+TGG | + | chr1_3:34628570-34628589 | None:intergenic | 45.0% |
| TCTGTAGAAGGTAATGTGCC+AGG | - | chr1_3:34628590-34628609 | Msa0115690:intron | 45.0% | |
| TCCCATTTACAAGTGCTACG+AGG | - | chr1_3:34628814-34628833 | Msa0115690:intron | 45.0% | |
| GCCTCGTAGCACTTGTAAAT+GGG | + | chr1_3:34628818-34628837 | None:intergenic | 45.0% | |
| ! | AACAGGCATTGCAAGCAAGT+TGG | - | chr1_3:34628990-34629009 | Msa0115690:intron | 45.0% |
| ! | ACAGGCATTGCAAGCAAGTT+GGG | - | chr1_3:34628991-34629010 | Msa0115690:intron | 45.0% |
| TGGCAGCATCTTGAGTATCT+TGG | + | chr1_3:34629019-34629038 | None:intergenic | 45.0% | |
| TACACTGTCGTAGCACTACA+TGG | - | chr1_3:34629094-34629113 | Msa0115690:intron | 45.0% | |
| !!! | TGATGTTTTGGGGGTTATGG+GGG | + | chr1_3:34629665-34629684 | None:intergenic | 45.0% |
| AGAAGGACAACGACAGAAGA+AGG | - | chr1_3:34629816-34629835 | Msa0115690:intron | 45.0% | |
| ! | GTAGTGCTTCTGAGAACTCA+AGG | + | chr1_3:34629879-34629898 | None:intergenic | 45.0% |
| CATGGAAGTGAAAGCAGCAA+AGG | + | chr1_3:34629902-34629921 | None:intergenic | 45.0% | |
| TGCTTTCACTTCCATGCTAG+TGG | - | chr1_3:34629906-34629925 | Msa0115690:CDS | 45.0% | |
| !! | GATTTCCAGGTTTGGTGAGG+AGG | - | chr1_3:34627721-34627740 | Msa0115690:CDS | 50.0% |
| ATTTCCCTCCTCACCAAACC+TGG | + | chr1_3:34627729-34627748 | None:intergenic | 50.0% | |
| ! | TATGTGGGCTGTCATGACTG+TGG | - | chr1_3:34627872-34627891 | Msa0115690:CDS | 50.0% |
| CATGACTGTGGTTGTGGTCA+TGG | - | chr1_3:34627884-34627903 | Msa0115690:CDS | 50.0% | |
| GTGGTCATGGAGTTCACTGT+AGG | - | chr1_3:34627897-34627916 | Msa0115690:CDS | 50.0% | |
| GCAGGAGGGACTTTATCCAA+AGG | - | chr1_3:34628033-34628052 | Msa0115690:CDS | 50.0% | |
| GGATTGGGAACTTCGTTAGC+AGG | - | chr1_3:34628066-34628085 | Msa0115690:CDS | 50.0% | |
| AGGTCTTCCCCTGACCAATT+TGG | + | chr1_3:34628530-34628549 | None:intergenic | 50.0% | |
| GGCTTAGCCAACTCTGTAGA+AGG | - | chr1_3:34628578-34628597 | Msa0115690:intron | 50.0% | |
| GGCCTCGTAGCACTTGTAAA+TGG | + | chr1_3:34628819-34628838 | None:intergenic | 50.0% | |
| ATTGCTGCCATGGGATTCTC+TGG | + | chr1_3:34629039-34629058 | None:intergenic | 50.0% | |
| ! | GGGTAATGGCCAACAGCATA+AGG | - | chr1_3:34629515-34629534 | Msa0115690:intron | 50.0% |
| CACTTCCATGCTAGTGGAGA+TGG | - | chr1_3:34629912-34629931 | Msa0115690:CDS | 50.0% | |
| TTCCATGCTAGTGGAGATGG+TGG | - | chr1_3:34629915-34629934 | Msa0115690:CDS | 50.0% | |
| !! | GATTTCCAGGTTTGGTGAGG+AGG | - | chr1_3:34627721-34627740 | Msa0115690:CDS | 50.0% |
| ATTTCCCTCCTCACCAAACC+TGG | + | chr1_3:34627729-34627748 | None:intergenic | 50.0% | |
| ! | TATGTGGGCTGTCATGACTG+TGG | - | chr1_3:34627872-34627891 | Msa0115690:CDS | 50.0% |
| CATGACTGTGGTTGTGGTCA+TGG | - | chr1_3:34627884-34627903 | Msa0115690:CDS | 50.0% | |
| GTGGTCATGGAGTTCACTGT+AGG | - | chr1_3:34627897-34627916 | Msa0115690:CDS | 50.0% | |
| GCAGGAGGGACTTTATCCAA+AGG | - | chr1_3:34628033-34628052 | Msa0115690:CDS | 50.0% | |
| GGATTGGGAACTTCGTTAGC+AGG | - | chr1_3:34628066-34628085 | Msa0115690:CDS | 50.0% | |
| AGGTCTTCCCCTGACCAATT+TGG | + | chr1_3:34628530-34628549 | None:intergenic | 50.0% | |
| GGCTTAGCCAACTCTGTAGA+AGG | - | chr1_3:34628578-34628597 | Msa0115690:intron | 50.0% | |
| GGCCTCGTAGCACTTGTAAA+TGG | + | chr1_3:34628819-34628838 | None:intergenic | 50.0% | |
| ATTGCTGCCATGGGATTCTC+TGG | + | chr1_3:34629039-34629058 | None:intergenic | 50.0% | |
| ! | GGGTAATGGCCAACAGCATA+AGG | - | chr1_3:34629515-34629534 | Msa0115690:intron | 50.0% |
| CACTTCCATGCTAGTGGAGA+TGG | - | chr1_3:34629912-34629931 | Msa0115690:CDS | 50.0% | |
| TTCCATGCTAGTGGAGATGG+TGG | - | chr1_3:34629915-34629934 | Msa0115690:CDS | 50.0% | |
| GGCTGTCATGACTGTGGTTG+TGG | - | chr1_3:34627878-34627897 | Msa0115690:CDS | 55.0% | |
| GATGCTGCCAGAGAATCCCA+TGG | - | chr1_3:34629029-34629048 | Msa0115690:intron | 55.0% | |
| TGCCACCATCTCCACTAGCA+TGG | + | chr1_3:34629920-34629939 | None:intergenic | 55.0% | |
| GGCTGTCATGACTGTGGTTG+TGG | - | chr1_3:34627878-34627897 | Msa0115690:CDS | 55.0% | |
| GATGCTGCCAGAGAATCCCA+TGG | - | chr1_3:34629029-34629048 | Msa0115690:intron | 55.0% | |
| TGCCACCATCTCCACTAGCA+TGG | + | chr1_3:34629920-34629939 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 34627645 | 34630098 | 34627645 | ID=Msa0115690;Name=Msa0115690 |
| chr1_3 | mRNA | 34627645 | 34630098 | 34627645 | ID=Msa0115690-mRNA-1;Parent=Msa0115690;Name=Msa0115690-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|6|0|536 |
| chr1_3 | exon | 34629825 | 34630098 | 34629825 | ID=Msa0115690-mRNA-1:exon:10953;Parent=Msa0115690-mRNA-1 |
| chr1_3 | exon | 34629566 | 34629706 | 34629566 | ID=Msa0115690-mRNA-1:exon:10952;Parent=Msa0115690-mRNA-1 |
| chr1_3 | exon | 34629144 | 34629416 | 34629144 | ID=Msa0115690-mRNA-1:exon:10951;Parent=Msa0115690-mRNA-1 |
| chr1_3 | exon | 34628872 | 34628993 | 34628872 | ID=Msa0115690-mRNA-1:exon:10950;Parent=Msa0115690-mRNA-1 |
| chr1_3 | exon | 34628605 | 34628748 | 34628605 | ID=Msa0115690-mRNA-1:exon:10949;Parent=Msa0115690-mRNA-1 |
| chr1_3 | exon | 34627645 | 34628301 | 34627645 | ID=Msa0115690-mRNA-1:exon:10948;Parent=Msa0115690-mRNA-1 |
| chr1_3 | CDS | 34629825 | 34630098 | 34629825 | ID=Msa0115690-mRNA-1:cds;Parent=Msa0115690-mRNA-1 |
| chr1_3 | CDS | 34629566 | 34629706 | 34629566 | ID=Msa0115690-mRNA-1:cds;Parent=Msa0115690-mRNA-1 |
| chr1_3 | CDS | 34629144 | 34629416 | 34629144 | ID=Msa0115690-mRNA-1:cds;Parent=Msa0115690-mRNA-1 |
| chr1_3 | CDS | 34628872 | 34628993 | 34628872 | ID=Msa0115690-mRNA-1:cds;Parent=Msa0115690-mRNA-1 |
| chr1_3 | CDS | 34628605 | 34628748 | 34628605 | ID=Msa0115690-mRNA-1:cds;Parent=Msa0115690-mRNA-1 |
| chr1_3 | CDS | 34627645 | 34628301 | 34627645 | ID=Msa0115690-mRNA-1:cds;Parent=Msa0115690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
