Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1416200 | sp|O49696|ALMTC_ARATH | 55.179 | 531 | 200 | 6 | 25 | 525 | 27 | 549 | 0.0 | 579 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1416200 | A0A072VSP9 | 97.037 | 540 | 12 | 2 | 1 | 540 | 1 | 536 | 0.0 | 1080 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0045260 | Msa1416200 | 0.943533 | 1.013261e-102 | -8.615850e-47 |
| Msa0115690 | Msa1416200 | 0.970174 | 3.222143e-131 | -8.615850e-47 |
| Msa1416200 | Msa1441690 | 0.968424 | 1.170568e-128 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1416200 | MtrunA17_Chr1g0212201 | 97.037 | 540 | 12 | 2 | 1 | 540 | 1 | 536 | 0.0 | 1080 |
| Msa1416200 | MtrunA17_Chr1g0212251 | 83.643 | 538 | 80 | 6 | 5 | 540 | 1 | 532 | 0.0 | 917 |
| Msa1416200 | MtrunA17_Chr1g0212291 | 82.495 | 537 | 85 | 4 | 7 | 539 | 4 | 535 | 0.0 | 890 |
| Msa1416200 | MtrunA17_Chr4g0054741 | 58.672 | 542 | 206 | 6 | 1 | 540 | 9 | 534 | 0.0 | 606 |
| Msa1416200 | MtrunA17_Chr5g0400471 | 57.113 | 471 | 167 | 6 | 97 | 540 | 3 | 465 | 1.85e-170 | 490 |
| Msa1416200 | MtrunA17_Chr4g0054771 | 56.750 | 400 | 155 | 4 | 143 | 540 | 3 | 386 | 3.40e-152 | 441 |
| Msa1416200 | MtrunA17_Chr1g0188871 | 41.406 | 384 | 214 | 4 | 16 | 398 | 25 | 398 | 3.71e-100 | 310 |
| Msa1416200 | MtrunA17_Chr1g0188881 | 41.918 | 365 | 198 | 5 | 20 | 381 | 35 | 388 | 3.99e-97 | 303 |
| Msa1416200 | MtrunA17_Chr4g0025591 | 43.452 | 336 | 180 | 2 | 26 | 354 | 19 | 351 | 2.84e-90 | 285 |
| Msa1416200 | MtrunA17_Chr7g0267471 | 43.860 | 342 | 186 | 2 | 41 | 381 | 42 | 378 | 6.23e-86 | 274 |
| Msa1416200 | MtrunA17_Chr2g0321971 | 38.701 | 354 | 209 | 2 | 5 | 355 | 1 | 349 | 6.86e-83 | 265 |
| Msa1416200 | MtrunA17_Chr7g0259731 | 39.172 | 314 | 181 | 4 | 46 | 355 | 61 | 368 | 2.33e-76 | 248 |
| Msa1416200 | MtrunA17_Chr8g0390931 | 31.579 | 494 | 303 | 10 | 41 | 508 | 59 | 543 | 4.51e-74 | 245 |
| Msa1416200 | MtrunA17_Chr1g0210101 | 31.976 | 491 | 296 | 11 | 38 | 508 | 110 | 582 | 6.63e-72 | 240 |
| Msa1416200 | MtrunA17_Chr2g0321961 | 38.123 | 341 | 198 | 3 | 25 | 355 | 11 | 348 | 9.43e-72 | 236 |
| Msa1416200 | MtrunA17_Chr6g0484691 | 31.862 | 521 | 310 | 13 | 21 | 508 | 68 | 576 | 2.84e-71 | 239 |
| Msa1416200 | MtrunA17_Chr8g0390921 | 31.774 | 513 | 314 | 13 | 27 | 508 | 46 | 553 | 2.38e-68 | 230 |
| Msa1416200 | MtrunA17_Chr8g0390901 | 29.091 | 440 | 281 | 8 | 96 | 508 | 10 | 445 | 3.47e-55 | 192 |
| Msa1416200 | MtrunA17_Chr4g0054761 | 55.944 | 143 | 63 | 0 | 1 | 143 | 9 | 151 | 4.90e-36 | 132 |
| Msa1416200 | MtrunA17_Chr5g0400481 | 49.020 | 102 | 50 | 2 | 1 | 100 | 15 | 116 | 6.97e-28 | 107 |
| Msa1416200 | MtrunA17_Chr1g0209601 | 70.833 | 48 | 13 | 1 | 15 | 62 | 6 | 52 | 3.93e-15 | 69.7 |
| Msa1416200 | MtrunA17_Chr8g0390911 | 43.662 | 71 | 39 | 1 | 27 | 96 | 50 | 120 | 1.97e-14 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1416200 | AT4G17970.1 | 55.179 | 531 | 200 | 6 | 25 | 525 | 27 | 549 | 0.0 | 579 |
| Msa1416200 | AT5G46610.1 | 53.761 | 545 | 211 | 8 | 3 | 525 | 10 | 535 | 0.0 | 563 |
| Msa1416200 | AT5G46600.1 | 52.652 | 528 | 220 | 9 | 1 | 509 | 10 | 526 | 0.0 | 531 |
| Msa1416200 | AT5G46610.2 | 50.275 | 545 | 206 | 9 | 3 | 525 | 10 | 511 | 5.43e-178 | 512 |
| Msa1416200 | AT5G46610.3 | 47.523 | 545 | 198 | 9 | 3 | 525 | 10 | 488 | 2.30e-161 | 468 |
| Msa1416200 | AT4G00910.1 | 32.193 | 497 | 268 | 7 | 24 | 515 | 45 | 477 | 7.17e-96 | 300 |
| Msa1416200 | AT1G08440.1 | 42.056 | 321 | 186 | 0 | 35 | 355 | 7 | 327 | 3.06e-82 | 265 |
| Msa1416200 | AT3G11680.1 | 40.556 | 360 | 201 | 3 | 37 | 396 | 32 | 378 | 4.36e-77 | 251 |
| Msa1416200 | AT3G11680.2 | 40.556 | 360 | 201 | 3 | 37 | 396 | 34 | 380 | 5.10e-77 | 251 |
| Msa1416200 | AT3G18440.1 | 31.961 | 510 | 298 | 12 | 35 | 508 | 73 | 569 | 7.48e-77 | 254 |
| Msa1416200 | AT1G08430.1 | 40.123 | 324 | 191 | 1 | 35 | 355 | 7 | 330 | 3.78e-75 | 246 |
| Msa1416200 | AT2G27240.2 | 39.496 | 357 | 200 | 4 | 35 | 386 | 7 | 352 | 2.01e-74 | 244 |
| Msa1416200 | AT2G27240.1 | 37.566 | 378 | 204 | 4 | 35 | 386 | 7 | 378 | 1.62e-72 | 240 |
| Msa1416200 | AT1G18420.1 | 29.511 | 532 | 329 | 12 | 13 | 508 | 56 | 577 | 1.44e-71 | 239 |
| Msa1416200 | AT1G18420.2 | 30.020 | 503 | 307 | 11 | 42 | 508 | 1 | 494 | 1.71e-70 | 234 |
| Msa1416200 | AT1G68600.1 | 30.957 | 533 | 319 | 16 | 5 | 511 | 23 | 532 | 5.85e-69 | 231 |
| Msa1416200 | AT2G17470.1 | 31.148 | 488 | 307 | 11 | 41 | 508 | 31 | 509 | 1.16e-67 | 228 |
| Msa1416200 | AT2G17470.2 | 31.148 | 488 | 307 | 11 | 41 | 508 | 53 | 531 | 1.99e-67 | 228 |
| Msa1416200 | AT1G25480.1 | 30.368 | 517 | 318 | 14 | 15 | 508 | 44 | 541 | 3.84e-67 | 227 |
| Msa1416200 | AT4G17585.1 | 61.429 | 70 | 22 | 2 | 25 | 93 | 27 | 92 | 7.62e-22 | 92.4 |
Find 105 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTGGTGAGGAGGGAAATT+TGG | 0.194186 | tig0024333:+67115 | Msa1416200:CDS |
| TTCGATTTACTTCCAATTAC+TGG | 0.207825 | tig0024333:-69148 | None:intergenic |
| GATAATGACTTGCCTTCTTA+TGG | 0.225915 | tig0024333:+69445 | Msa1416200:CDS |
| CAATCCTCTGTTTAGTCCTT+TGG | 0.226640 | tig0024333:-67428 | None:intergenic |
| TGTATCTTTGTTGTATCTAA+TGG | 0.228111 | tig0024333:+67203 | Msa1416200:CDS |
| GGCCTCGTAGCACTTGTAAA+TGG | 0.244757 | tig0024333:-68195 | None:intergenic |
| GATTGTTGTTCCCCAGTAAT+TGG | 0.275194 | tig0024333:+69136 | Msa1416200:CDS |
| AAGAAGTATCAAAAGTTCTA+AGG | 0.276507 | tig0024333:+68873 | Msa1416200:CDS |
| GTTGGCTAAGCCTTCAAGTT+TGG | 0.288017 | tig0024333:-67946 | None:intergenic |
| AGGTCTTCCCCTGACCAATT+TGG | 0.290568 | tig0024333:-67906 | None:intergenic |
| GTCTATTTGTATTTCCAAAT+TGG | 0.292616 | tig0024333:+67892 | Msa1416200:CDS |
| CGATACAATTATCAAATTAA+AGG | 0.294901 | tig0024333:-67784 | None:intergenic |
| TGAGCATTTCTTAGTATTGT+TGG | 0.297879 | tig0024333:-67040 | None:intergenic |
| GTCATAATTCTTCTTGATAT+AGG | 0.301733 | tig0024333:-67736 | None:intergenic |
| AGTTGCTTTAGTTGATGTTT+TGG | 0.316900 | tig0024333:-69053 | None:intergenic |
| TCATAATTCTTCTTGATATA+GGG | 0.317116 | tig0024333:-67735 | None:intergenic |
| ATGTTTGCAGTCAGAAATTC+AGG | 0.318176 | tig0024333:+68496 | Msa1416200:CDS |
| TATGGATAAAGTTGAAGAAT+TGG | 0.322871 | tig0024333:+69333 | Msa1416200:CDS |
| AGAGAATGGAGTATCCTTCT+TGG | 0.331437 | tig0024333:-67156 | None:intergenic |
| CTACGACAGTGTAACTAAAA+TGG | 0.337816 | tig0024333:-68463 | None:intergenic |
| TAAGCCTTCAAGTTTGGATA+TGG | 0.348181 | tig0024333:-67940 | None:intergenic |
| GATAAAGTGAAAAGATTTCC+AGG | 0.365738 | tig0024333:+67093 | Msa1416200:CDS |
| CTAAGAAATGCTCAAGTCAT+TGG | 0.367385 | tig0024333:+67049 | Msa1416200:CDS |
| ATCGCTCGAAATATTTGATC+AGG | 0.377745 | tig0024333:-67505 | None:intergenic |
| ATGGATAAAGTTGAAGAATT+GGG | 0.381672 | tig0024333:+69334 | Msa1416200:CDS |
| TTTGTATTTCCAAATTGGTC+AGG | 0.383204 | tig0024333:+67897 | Msa1416200:CDS |
| TGGCAGCATCTTGAGTATCT+TGG | 0.404533 | tig0024333:-68395 | None:intergenic |
| AGGAGGGAAATTTGGAAAGT+TGG | 0.407214 | tig0024333:+67123 | Msa1416200:CDS |
| CACTTCCATGCTAGTGGAGA+TGG | 0.408461 | tig0024333:+69291 | Msa1416200:CDS |
| ATCAAGAAGAATTATGACTA+TGG | 0.415116 | tig0024333:+67741 | Msa1416200:CDS |
| AGTGAAAAGATTTCCAGGTT+TGG | 0.418187 | tig0024333:+67098 | Msa1416200:CDS |
| ACAGGCATTGCAAGCAAGTT+GGG | 0.420671 | tig0024333:+68370 | Msa1416200:intron |
| GCCTCGTAGCACTTGTAAAT+GGG | 0.427131 | tig0024333:-68194 | None:intergenic |
| GAATTATGACTATGGTGTTA+TGG | 0.427501 | tig0024333:+67749 | Msa1416200:CDS |
| ATTTCCCTCCTCACCAAACC+TGG | 0.429641 | tig0024333:-67111 | None:intergenic |
| ATTGCTGCCATGGGATTCTC+TGG | 0.433448 | tig0024333:-68415 | None:intergenic |
| AACTTCGTTAGCAGGATTGT+TGG | 0.434227 | tig0024333:+67453 | Msa1416200:CDS |
| CATGACTGTGGTTGTGGTCA+TGG | 0.437773 | tig0024333:+67269 | Msa1416200:CDS |
| TTTAGGCATGGAAGTTTCAA+TGG | 0.439300 | tig0024333:+67011 | None:intergenic |
| GGCTGTCATGACTGTGGTTG+TGG | 0.441242 | tig0024333:+67263 | Msa1416200:CDS |
| GGATTGGGAACTTCGTTAGC+AGG | 0.446695 | tig0024333:+67445 | Msa1416200:CDS |
| CTTAGCTTTAGAATCTAAAA+CGG | 0.446937 | tig0024333:-68216 | None:intergenic |
| TAATGGAGCCATTGTTCAAA+GGG | 0.447359 | tig0024333:+67220 | Msa1416200:CDS |
| CAAAGGACTAAACAGAGGAT+TGG | 0.451197 | tig0024333:+67429 | Msa1416200:CDS |
| GGCTTAGCCAACTCTGTAGA+AGG | 0.451778 | tig0024333:+67957 | Msa1416200:CDS |
| TCCACCATATCCAAACTTGA+AGG | 0.459404 | tig0024333:+67936 | Msa1416200:CDS |
| GCCTTCAAGTTTGGATATGG+TGG | 0.460456 | tig0024333:-67937 | None:intergenic |
| ATCAAAAGTTCTAAGGGTAA+TGG | 0.464081 | tig0024333:+68880 | Msa1416200:CDS |
| GGCAAAACTAGATCATGTTA+TGG | 0.464191 | tig0024333:+69315 | Msa1416200:CDS |
| TCGATTTACTTCCAATTACT+GGG | 0.468998 | tig0024333:-69147 | None:intergenic |
| CAAGACCAACTTTCAGAGAA+TGG | 0.469576 | tig0024333:-67170 | None:intergenic |
| TGGATATGGTGGATTTATGA+AGG | 0.471579 | tig0024333:-67926 | None:intergenic |
| GGGTAATGGCCAACAGCATA+AGG | 0.474387 | tig0024333:+68894 | Msa1416200:CDS |
| AAAGGACTAAACAGAGGATT+GGG | 0.474990 | tig0024333:+67430 | Msa1416200:CDS |
| TGCTTTCACTTCCATGCTAG+TGG | 0.483281 | tig0024333:+69285 | Msa1416200:CDS |
| AACAGGCATTGCAAGCAAGT+TGG | 0.483716 | tig0024333:+68369 | Msa1416200:intron |
| CACATTACCTTCTACAGAGT+TGG | 0.494928 | tig0024333:-67964 | None:intergenic |
| AATTATTCTGCTCCATAAGA+AGG | 0.495731 | tig0024333:-69457 | None:intergenic |
| CAACTGCACATAATGACAAC+AGG | 0.496230 | tig0024333:+69071 | Msa1416200:CDS |
| GATTTCCAGGTTTGGTGAGG+AGG | 0.505112 | tig0024333:+67106 | Msa1416200:CDS |
| ATACTCCATTCTCTGAAAGT+TGG | 0.519791 | tig0024333:+67165 | Msa1416200:CDS |
| GATCCTATCCCTTTGAACAA+TGG | 0.522592 | tig0024333:-67228 | None:intergenic |
| TTGTATTTCCAAATTGGTCA+GGG | 0.524590 | tig0024333:+67898 | Msa1416200:CDS |
| AGAAGGACAACGACAGAAGA+AGG | 0.527566 | tig0024333:+69195 | Msa1416200:CDS |
| ATTTCCAGGTTTGGTGAGGA+GGG | 0.533036 | tig0024333:+67107 | Msa1416200:CDS |
| AGAAGTATCAAAAGTTCTAA+GGG | 0.545176 | tig0024333:+68874 | Msa1416200:CDS |
| TACACTGTCGTAGCACTACA+TGG | 0.546505 | tig0024333:+68473 | Msa1416200:CDS |
| GATTGTTTGAGAGTGTTTGA+AGG | 0.549129 | tig0024333:-68934 | None:intergenic |
| TATAGATCACGGATTGACCT+TGG | 0.551863 | tig0024333:-68824 | None:intergenic |
| ATGGAAGTGAAAGCAGCAAA+GGG | 0.553411 | tig0024333:-69277 | None:intergenic |
| CTAATGGAGCCATTGTTCAA+AGG | 0.553954 | tig0024333:+67219 | Msa1416200:CDS |
| GCGATTTCAATGCATTGTCA+AGG | 0.563036 | tig0024333:-68976 | None:intergenic |
| CACTTTAGAGAGTTCAGAGA+TGG | 0.567128 | tig0024333:+69367 | Msa1416200:CDS |
| GTAGTGCTTCTGAGAACTCA+AGG | 0.568913 | tig0024333:-69255 | None:intergenic |
| AAGAATCTTTGTATAGATCA+CGG | 0.570177 | tig0024333:-68835 | None:intergenic |
| CTTGAGCCTAGTAAAAGTTG+TGG | 0.570351 | tig0024333:-69001 | None:intergenic |
| TGCCACCATCTCCACTAGCA+TGG | 0.571399 | tig0024333:-69296 | None:intergenic |
| CATGGAAGTGAAAGCAGCAA+AGG | 0.571864 | tig0024333:-69278 | None:intergenic |
| TGGCAGCAATATGCAAAAGT+AGG | 0.572216 | tig0024333:+68428 | Msa1416200:CDS |
| GATAGGATCAAATGCTATGT+GGG | 0.574841 | tig0024333:+67242 | Msa1416200:CDS |
| TCCCGAGAACAAATAAAAGA+AGG | 0.576657 | tig0024333:+69178 | Msa1416200:CDS |
| TAAAGCTAAGGATGAAACAC+TGG | 0.580961 | tig0024333:+68229 | Msa1416200:CDS |
| GAGCCATTGTTCAAAGGGAT+AGG | 0.581364 | tig0024333:+67225 | Msa1416200:CDS |
| TCTACTATATGCATCGGCGT+TGG | 0.581570 | tig0024333:+67852 | Msa1416200:CDS |
| GGATAGGATCAAATGCTATG+TGG | 0.592083 | tig0024333:+67241 | Msa1416200:CDS |
| ATTGTTTGAGAGTGTTTGAA+GGG | 0.593546 | tig0024333:-68933 | None:intergenic |
| TAATGATGCAGCTACTGTTG+TGG | 0.595562 | tig0024333:+68118 | Msa1416200:intron |
| AAAGATTTCCAGGTTTGGTG+AGG | 0.606745 | tig0024333:+67103 | Msa1416200:CDS |
| TGTTGATAATGTCTTGAAGA+TGG | 0.607522 | tig0024333:+67815 | Msa1416200:CDS |
| GTGGTCATGGAGTTCACTGT+AGG | 0.611601 | tig0024333:+67282 | Msa1416200:CDS |
| TTCCATGCTAGTGGAGATGG+TGG | 0.616449 | tig0024333:+69294 | Msa1416200:CDS |
| CGATTTACTTCCAATTACTG+GGG | 0.623538 | tig0024333:-69146 | None:intergenic |
| TCGCTCGAAATATTTGATCA+GGG | 0.624217 | tig0024333:-67504 | None:intergenic |
| TTGGCAAAGATGATCCAAGA+AGG | 0.626674 | tig0024333:+67142 | Msa1416200:CDS |
| CGTATCTCTACTATATGCAT+CGG | 0.629374 | tig0024333:+67846 | Msa1416200:CDS |
| AAATGAAGATGATTCATCAG+AGG | 0.647988 | tig0024333:+68169 | Msa1416200:CDS |
| TGTATTTCCAAATTGGTCAG+GGG | 0.650407 | tig0024333:+67899 | Msa1416200:CDS |
| GCAGGAGGGACTTTATCCAA+AGG | 0.661845 | tig0024333:+67412 | Msa1416200:intron |
| TTATCCAAAGGACTAAACAG+AGG | 0.684276 | tig0024333:+67424 | Msa1416200:CDS |
| CGACAGTGTAACTAAAATGG+CGG | 0.692887 | tig0024333:-68460 | None:intergenic |
| CATTGTTGTTGAAGACACCA+AGG | 0.696785 | tig0024333:+68807 | Msa1416200:intron |
| GATGCTGCCAGAGAATCCCA+TGG | 0.698745 | tig0024333:+68408 | Msa1416200:CDS |
| TATGTGGGCTGTCATGACTG+TGG | 0.700236 | tig0024333:+67257 | Msa1416200:CDS |
| TCCCATTTACAAGTGCTACG+AGG | 0.725963 | tig0024333:+68193 | Msa1416200:CDS |
| TCTTCAAGACATTATCAACA+CGG | 0.726201 | tig0024333:-67812 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACTATTTTAAAAAATAGAA+GGG | - | tig0024333:68301-68320 | None:intergenic | 10.0% |
| !!! | ATACTATTTTAAAAAATAGA+AGG | - | tig0024333:68302-68321 | None:intergenic | 10.0% |
| !! | AATGGTTAAGAAAAATATTT+AGG | - | tig0024333:67666-67685 | None:intergenic | 15.0% |
| !!! | AATAGTCTACATTATTTTAT+TGG | + | tig0024333:68686-68705 | Msa1416200:intron | 15.0% |
| !!! | AGAGTTATATTTTATACTAA+AGG | - | tig0024333:68739-68758 | None:intergenic | 15.0% |
| !!! | TTATCAACTATATTGATTTT+CGG | - | tig0024333:69430-69449 | None:intergenic | 15.0% |
| !! | TCATAATTCTTCTTGATATA+GGG | - | tig0024333:67738-67757 | None:intergenic | 20.0% |
| !! | CGATACAATTATCAAATTAA+AGG | - | tig0024333:67787-67806 | None:intergenic | 20.0% |
| !! | TACTTTACTTGACAAAAAAA+GGG | - | tig0024333:68266-68285 | None:intergenic | 20.0% |
| !! | TTAAATAGTACGTAAGTTAA+AGG | - | tig0024333:68785-68804 | None:intergenic | 20.0% |
| !!! | ATGATAATTTTACTAAGTTG+TGG | - | tig0024333:69229-69248 | None:intergenic | 20.0% |
| !! | TGTATCTTTGTTGTATCTAA+TGG | + | tig0024333:67203-67222 | Msa1416200:CDS | 25.0% |
| ! | TGTTTATATCACAATCTCAT+AGG | + | tig0024333:67368-67387 | Msa1416200:intron | 25.0% |
| !! | TTTAAGAGAAGCTTAATTTG+TGG | + | tig0024333:67631-67650 | Msa1416200:intron | 25.0% |
| ! | GTCATAATTCTTCTTGATAT+AGG | - | tig0024333:67739-67758 | None:intergenic | 25.0% |
| ! | ATCAAGAAGAATTATGACTA+TGG | + | tig0024333:67741-67760 | Msa1416200:CDS | 25.0% |
| ! | GTCTATTTGTATTTCCAAAT+TGG | + | tig0024333:67892-67911 | Msa1416200:CDS | 25.0% |
| ! | AGCAATATTCTATAATGAAG+TGG | - | tig0024333:67998-68017 | None:intergenic | 25.0% |
| !!! | CTTAGCTTTAGAATCTAAAA+CGG | - | tig0024333:68219-68238 | None:intergenic | 25.0% |
| ! | ACTTTACTTGACAAAAAAAG+GGG | - | tig0024333:68265-68284 | None:intergenic | 25.0% |
| ! | GTACTTTACTTGACAAAAAA+AGG | - | tig0024333:68267-68286 | None:intergenic | 25.0% |
| ! | AATAACATGACAGATAATCT+AGG | - | tig0024333:68556-68575 | None:intergenic | 25.0% |
| ! | ATTGATTAAGATCTATATGC+AGG | + | tig0024333:68613-68632 | Msa1416200:intron | 25.0% |
| ! | AAGAATCTTTGTATAGATCA+CGG | - | tig0024333:68838-68857 | None:intergenic | 25.0% |
| !!! | AAGAAGTATCAAAAGTTCTA+AGG | + | tig0024333:68873-68892 | Msa1416200:CDS | 25.0% |
| !!! | AGAAGTATCAAAAGTTCTAA+GGG | + | tig0024333:68874-68893 | Msa1416200:CDS | 25.0% |
| ! | TATGGATAAAGTTGAAGAAT+TGG | + | tig0024333:69333-69352 | Msa1416200:CDS | 25.0% |
| ! | ATGGATAAAGTTGAAGAATT+GGG | + | tig0024333:69334-69353 | Msa1416200:CDS | 25.0% |
| TGAGCATTTCTTAGTATTGT+TGG | - | tig0024333:67043-67062 | None:intergenic | 30.0% | |
| GATAAAGTGAAAAGATTTCC+AGG | + | tig0024333:67093-67112 | Msa1416200:CDS | 30.0% | |
| TCACAATCTCATAGGTATTA+AGG | + | tig0024333:67376-67395 | Msa1416200:intron | 30.0% | |
| ! | ATATTTCGAGCGATTTTCAT+TGG | + | tig0024333:67514-67533 | Msa1416200:CDS | 30.0% |
| CTTACCTAAAAGAAAAACAG+CGG | - | tig0024333:67542-67561 | None:intergenic | 30.0% | |
| GGTAAGCATTTATTACATCA+TGG | + | tig0024333:67556-67575 | Msa1416200:intron | 30.0% | |
| ! | GAATTATGACTATGGTGTTA+TGG | + | tig0024333:67749-67768 | Msa1416200:CDS | 30.0% |
| TCTTCAAGACATTATCAACA+CGG | - | tig0024333:67815-67834 | None:intergenic | 30.0% | |
| !! | TGTTGATAATGTCTTGAAGA+TGG | + | tig0024333:67815-67834 | Msa1416200:CDS | 30.0% |
| TTTGTATTTCCAAATTGGTC+AGG | + | tig0024333:67897-67916 | Msa1416200:CDS | 30.0% | |
| TTGTATTTCCAAATTGGTCA+GGG | + | tig0024333:67898-67917 | Msa1416200:CDS | 30.0% | |
| GTCTCAATCTATATAAGTGA+TGG | + | tig0024333:68089-68108 | Msa1416200:intron | 30.0% | |
| AAATGAAGATGATTCATCAG+AGG | + | tig0024333:68169-68188 | Msa1416200:CDS | 30.0% | |
| !!! | CGTTTTAGATTCTAAAGCTA+AGG | + | tig0024333:68217-68236 | Msa1416200:CDS | 30.0% |
| TTTGTCAAGTAAAGTACACT+AGG | + | tig0024333:68270-68289 | Msa1416200:intron | 30.0% | |
| ! | CTTACAGTGTTGAATTAAAC+AGG | + | tig0024333:68352-68371 | Msa1416200:intron | 30.0% |
| TACTAAATCAGCTATCGATA+AGG | + | tig0024333:68519-68538 | Msa1416200:intron | 30.0% | |
| ! | GTCATGTTATTGATAGTACA+TGG | + | tig0024333:68565-68584 | Msa1416200:intron | 30.0% |
| GCTAGCATCTTCATAATTAT+TGG | + | tig0024333:68708-68727 | Msa1416200:intron | 30.0% | |
| !! | ATCAAAAGTTCTAAGGGTAA+TGG | + | tig0024333:68880-68899 | Msa1416200:CDS | 30.0% |
| !! | ATTGTTTGAGAGTGTTTGAA+GGG | - | tig0024333:68936-68955 | None:intergenic | 30.0% |
| !! | TTGCTTTAGTTGATGTTTTG+GGG | - | tig0024333:69054-69073 | None:intergenic | 30.0% |
| !! | GTTGCTTTAGTTGATGTTTT+GGG | - | tig0024333:69055-69074 | None:intergenic | 30.0% |
| !! | AGTTGCTTTAGTTGATGTTT+TGG | - | tig0024333:69056-69075 | None:intergenic | 30.0% |
| TCGATTTACTTCCAATTACT+GGG | - | tig0024333:69150-69169 | None:intergenic | 30.0% | |
| TTCGATTTACTTCCAATTAC+TGG | - | tig0024333:69151-69170 | None:intergenic | 30.0% | |
| !! | TCCTTCTTTTATTTGTTCTC+GGG | - | tig0024333:69182-69201 | None:intergenic | 30.0% |
| !! | GTCCTTCTTTTATTTGTTCT+CGG | - | tig0024333:69183-69202 | None:intergenic | 30.0% |
| CTAAGAAATGCTCAAGTCAT+TGG | + | tig0024333:67049-67068 | Msa1416200:CDS | 35.0% | |
| AGTGAAAAGATTTCCAGGTT+TGG | + | tig0024333:67098-67117 | Msa1416200:CDS | 35.0% | |
| ! | ATACTCCATTCTCTGAAAGT+TGG | + | tig0024333:67165-67184 | Msa1416200:CDS | 35.0% |
| TAATGGAGCCATTGTTCAAA+GGG | + | tig0024333:67220-67239 | Msa1416200:CDS | 35.0% | |
| GATAGGATCAAATGCTATGT+GGG | + | tig0024333:67242-67261 | Msa1416200:CDS | 35.0% | |
| TAAGGATCAGTTATGATTGC+AGG | + | tig0024333:67394-67413 | Msa1416200:intron | 35.0% | |
| TTATCCAAAGGACTAAACAG+AGG | + | tig0024333:67424-67443 | Msa1416200:CDS | 35.0% | |
| AAAGGACTAAACAGAGGATT+GGG | + | tig0024333:67430-67449 | Msa1416200:CDS | 35.0% | |
| TCGCTCGAAATATTTGATCA+GGG | - | tig0024333:67507-67526 | None:intergenic | 35.0% | |
| ATCGCTCGAAATATTTGATC+AGG | - | tig0024333:67508-67527 | None:intergenic | 35.0% | |
| GCAAACAAACAGTGAAACAA+TGG | - | tig0024333:67684-67703 | None:intergenic | 35.0% | |
| TTGTTTCACTGTTTGTTTGC+AGG | + | tig0024333:67684-67703 | Msa1416200:intron | 35.0% | |
| CGTATCTCTACTATATGCAT+CGG | + | tig0024333:67846-67865 | Msa1416200:CDS | 35.0% | |
| TGTATTTCCAAATTGGTCAG+GGG | + | tig0024333:67899-67918 | Msa1416200:CDS | 35.0% | |
| !! | TGGATATGGTGGATTTATGA+AGG | - | tig0024333:67929-67948 | None:intergenic | 35.0% |
| ! | TAAGCCTTCAAGTTTGGATA+TGG | - | tig0024333:67943-67962 | None:intergenic | 35.0% |
| TAAAGCTAAGGATGAAACAC+TGG | + | tig0024333:68229-68248 | Msa1416200:CDS | 35.0% | |
| CTACGACAGTGTAACTAAAA+TGG | - | tig0024333:68466-68485 | None:intergenic | 35.0% | |
| ATGTTTGCAGTCAGAAATTC+AGG | + | tig0024333:68496-68515 | Msa1416200:CDS | 35.0% | |
| CAGGCTTATAATGATTGTCA+GGG | + | tig0024333:68632-68651 | Msa1416200:intron | 35.0% | |
| ! | TTGGTGTCTTCAACAACAAT+GGG | - | tig0024333:68808-68827 | None:intergenic | 35.0% |
| !!! | ATGCTTTTTCCTTATGCTGT+TGG | - | tig0024333:68906-68925 | None:intergenic | 35.0% |
| !! | GATTGTTTGAGAGTGTTTGA+AGG | - | tig0024333:68937-68956 | None:intergenic | 35.0% |
| !! | TGCTTTAGTTGATGTTTTGG+GGG | - | tig0024333:69053-69072 | None:intergenic | 35.0% |
| CGATTTACTTCCAATTACTG+GGG | - | tig0024333:69149-69168 | None:intergenic | 35.0% | |
| TCCCGAGAACAAATAAAAGA+AGG | + | tig0024333:69178-69197 | Msa1416200:CDS | 35.0% | |
| GGCAAAACTAGATCATGTTA+TGG | + | tig0024333:69315-69334 | Msa1416200:CDS | 35.0% | |
| ! | GATAATGACTTGCCTTCTTA+TGG | + | tig0024333:69445-69464 | Msa1416200:CDS | 35.0% |
| !! | AAAGATTTCCAGGTTTGGTG+AGG | + | tig0024333:67103-67122 | Msa1416200:CDS | 40.0% |
| AGGAGGGAAATTTGGAAAGT+TGG | + | tig0024333:67123-67142 | Msa1416200:CDS | 40.0% | |
| TTGGCAAAGATGATCCAAGA+AGG | + | tig0024333:67142-67161 | Msa1416200:CDS | 40.0% | |
| ! | AGAGAATGGAGTATCCTTCT+TGG | - | tig0024333:67159-67178 | None:intergenic | 40.0% |
| CAAGACCAACTTTCAGAGAA+TGG | - | tig0024333:67173-67192 | None:intergenic | 40.0% | |
| CTAATGGAGCCATTGTTCAA+AGG | + | tig0024333:67219-67238 | Msa1416200:CDS | 40.0% | |
| GATCCTATCCCTTTGAACAA+TGG | - | tig0024333:67231-67250 | None:intergenic | 40.0% | |
| GGATAGGATCAAATGCTATG+TGG | + | tig0024333:67241-67260 | Msa1416200:CDS | 40.0% | |
| GATCAGTTATGATTGCAGGA+GGG | + | tig0024333:67398-67417 | Msa1416200:intron | 40.0% | |
| CAATCCTCTGTTTAGTCCTT+TGG | - | tig0024333:67431-67450 | None:intergenic | 40.0% | |
| CAAAGGACTAAACAGAGGAT+TGG | + | tig0024333:67429-67448 | Msa1416200:CDS | 40.0% | |
| AACTTCGTTAGCAGGATTGT+TGG | + | tig0024333:67453-67472 | Msa1416200:CDS | 40.0% | |
| !! | AGAGAAGCTTAATTTGTGGC+TGG | + | tig0024333:67635-67654 | Msa1416200:intron | 40.0% |
| TCCACCATATCCAAACTTGA+AGG | + | tig0024333:67936-67955 | Msa1416200:CDS | 40.0% | |
| CACATTACCTTCTACAGAGT+TGG | - | tig0024333:67967-67986 | None:intergenic | 40.0% | |
| TCTATAATGAAGTGGTGACC+TGG | - | tig0024333:67990-68009 | None:intergenic | 40.0% | |
| TAATGATGCAGCTACTGTTG+TGG | + | tig0024333:68118-68137 | Msa1416200:intron | 40.0% | |
| ACTTGACAAAAAAAGGGGCA+TGG | - | tig0024333:68260-68279 | None:intergenic | 40.0% | |
| ! | CTTTTGCATATTGCTGCCAT+GGG | - | tig0024333:68427-68446 | None:intergenic | 40.0% |
| ! | ACTTTTGCATATTGCTGCCA+TGG | - | tig0024333:68428-68447 | None:intergenic | 40.0% |
| TGGCAGCAATATGCAAAAGT+AGG | + | tig0024333:68428-68447 | Msa1416200:CDS | 40.0% | |
| CGACAGTGTAACTAAAATGG+CGG | - | tig0024333:68463-68482 | None:intergenic | 40.0% | |
| GCAGGCTTATAATGATTGTC+AGG | + | tig0024333:68631-68650 | Msa1416200:intron | 40.0% | |
| !! | CTTGGTGTCTTCAACAACAA+TGG | - | tig0024333:68809-68828 | None:intergenic | 40.0% |
| ! | CATTGTTGTTGAAGACACCA+AGG | + | tig0024333:68807-68826 | Msa1416200:intron | 40.0% |
| ! | TATAGATCACGGATTGACCT+TGG | - | tig0024333:68827-68846 | None:intergenic | 40.0% |
| GCGATTTCAATGCATTGTCA+AGG | - | tig0024333:68979-68998 | None:intergenic | 40.0% | |
| ! | TCGCAACCACAACTTTTACT+AGG | + | tig0024333:68995-69014 | Msa1416200:CDS | 40.0% |
| CTTGAGCCTAGTAAAAGTTG+TGG | - | tig0024333:69004-69023 | None:intergenic | 40.0% | |
| ! | CACAACTTTTACTAGGCTCA+AGG | + | tig0024333:69002-69021 | Msa1416200:CDS | 40.0% |
| !!! | TTGATGTTTTGGGGGTTATG+GGG | - | tig0024333:69045-69064 | None:intergenic | 40.0% |
| !!! | GTTGATGTTTTGGGGGTTAT+GGG | - | tig0024333:69046-69065 | None:intergenic | 40.0% |
| !!! | AGTTGATGTTTTGGGGGTTA+TGG | - | tig0024333:69047-69066 | None:intergenic | 40.0% |
| CAACTGCACATAATGACAAC+AGG | + | tig0024333:69071-69090 | Msa1416200:CDS | 40.0% | |
| ! | GATTGTTGTTCCCCAGTAAT+TGG | + | tig0024333:69136-69155 | Msa1416200:CDS | 40.0% |
| ! | AACGACAGAAGAAGGTTTTG+AGG | + | tig0024333:69203-69222 | Msa1416200:CDS | 40.0% |
| ATGGAAGTGAAAGCAGCAAA+GGG | - | tig0024333:69280-69299 | None:intergenic | 40.0% | |
| ! | CACTTTAGAGAGTTCAGAGA+TGG | + | tig0024333:69367-69386 | Msa1416200:CDS | 40.0% |
| !! | ATTTCCAGGTTTGGTGAGGA+GGG | + | tig0024333:67107-67126 | Msa1416200:CDS | 45.0% |
| ! | GTTTGGTGAGGAGGGAAATT+TGG | + | tig0024333:67115-67134 | Msa1416200:CDS | 45.0% |
| GAGCCATTGTTCAAAGGGAT+AGG | + | tig0024333:67225-67244 | Msa1416200:CDS | 45.0% | |
| GGAGTTCACTGTAGGTAAAC+AGG | + | tig0024333:67290-67309 | Msa1416200:intron | 45.0% | |
| GGATCAGTTATGATTGCAGG+AGG | + | tig0024333:67397-67416 | Msa1416200:intron | 45.0% | |
| !!! | GGAGCCGCTGTTTTTCTTTT+AGG | + | tig0024333:67535-67554 | Msa1416200:CDS | 45.0% |
| ! | TCTACTATATGCATCGGCGT+TGG | + | tig0024333:67852-67871 | Msa1416200:CDS | 45.0% |
| ! | GCCTTCAAGTTTGGATATGG+TGG | - | tig0024333:67940-67959 | None:intergenic | 45.0% |
| ! | GTTGGCTAAGCCTTCAAGTT+TGG | - | tig0024333:67949-67968 | None:intergenic | 45.0% |
| TCTGTAGAAGGTAATGTGCC+AGG | + | tig0024333:67969-67988 | Msa1416200:intron | 45.0% | |
| TCCCATTTACAAGTGCTACG+AGG | + | tig0024333:68193-68212 | Msa1416200:CDS | 45.0% | |
| GCCTCGTAGCACTTGTAAAT+GGG | - | tig0024333:68197-68216 | None:intergenic | 45.0% | |
| ! | AACAGGCATTGCAAGCAAGT+TGG | + | tig0024333:68369-68388 | Msa1416200:intron | 45.0% |
| ! | ACAGGCATTGCAAGCAAGTT+GGG | + | tig0024333:68370-68389 | Msa1416200:intron | 45.0% |
| TGGCAGCATCTTGAGTATCT+TGG | - | tig0024333:68398-68417 | None:intergenic | 45.0% | |
| TACACTGTCGTAGCACTACA+TGG | + | tig0024333:68473-68492 | Msa1416200:CDS | 45.0% | |
| !!! | TGATGTTTTGGGGGTTATGG+GGG | - | tig0024333:69044-69063 | None:intergenic | 45.0% |
| AGAAGGACAACGACAGAAGA+AGG | + | tig0024333:69195-69214 | Msa1416200:CDS | 45.0% | |
| ! | GTAGTGCTTCTGAGAACTCA+AGG | - | tig0024333:69258-69277 | None:intergenic | 45.0% |
| CATGGAAGTGAAAGCAGCAA+AGG | - | tig0024333:69281-69300 | None:intergenic | 45.0% | |
| TGCTTTCACTTCCATGCTAG+TGG | + | tig0024333:69285-69304 | Msa1416200:CDS | 45.0% | |
| !! | GATTTCCAGGTTTGGTGAGG+AGG | + | tig0024333:67106-67125 | Msa1416200:CDS | 50.0% |
| ATTTCCCTCCTCACCAAACC+TGG | - | tig0024333:67114-67133 | None:intergenic | 50.0% | |
| ! | TATGTGGGCTGTCATGACTG+TGG | + | tig0024333:67257-67276 | Msa1416200:CDS | 50.0% |
| CATGACTGTGGTTGTGGTCA+TGG | + | tig0024333:67269-67288 | Msa1416200:CDS | 50.0% | |
| GTGGTCATGGAGTTCACTGT+AGG | + | tig0024333:67282-67301 | Msa1416200:CDS | 50.0% | |
| GCAGGAGGGACTTTATCCAA+AGG | + | tig0024333:67412-67431 | Msa1416200:intron | 50.0% | |
| GGATTGGGAACTTCGTTAGC+AGG | + | tig0024333:67445-67464 | Msa1416200:CDS | 50.0% | |
| AGGTCTTCCCCTGACCAATT+TGG | - | tig0024333:67909-67928 | None:intergenic | 50.0% | |
| GGCTTAGCCAACTCTGTAGA+AGG | + | tig0024333:67957-67976 | Msa1416200:CDS | 50.0% | |
| GGCCTCGTAGCACTTGTAAA+TGG | - | tig0024333:68198-68217 | None:intergenic | 50.0% | |
| ATTGCTGCCATGGGATTCTC+TGG | - | tig0024333:68418-68437 | None:intergenic | 50.0% | |
| ! | GGGTAATGGCCAACAGCATA+AGG | + | tig0024333:68894-68913 | Msa1416200:CDS | 50.0% |
| CACTTCCATGCTAGTGGAGA+TGG | + | tig0024333:69291-69310 | Msa1416200:CDS | 50.0% | |
| TTCCATGCTAGTGGAGATGG+TGG | + | tig0024333:69294-69313 | Msa1416200:CDS | 50.0% | |
| GGCTGTCATGACTGTGGTTG+TGG | + | tig0024333:67263-67282 | Msa1416200:CDS | 55.0% | |
| GATGCTGCCAGAGAATCCCA+TGG | + | tig0024333:68408-68427 | Msa1416200:CDS | 55.0% | |
| TGCCACCATCTCCACTAGCA+TGG | - | tig0024333:69299-69318 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024333 | gene | 67018 | 69477 | 67018 | ID=Msa1416200;Name=Msa1416200 |
| tig0024333 | mRNA | 67018 | 69477 | 67018 | ID=Msa1416200-mRNA-1;Parent=Msa1416200;Name=Msa1416200-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|1|1|1|6|0|540 |
| tig0024333 | exon | 67018 | 67303 | 67018 | ID=Msa1416200-mRNA-1:exon:22802;Parent=Msa1416200-mRNA-1 |
| tig0024333 | exon | 67416 | 67556 | 67416 | ID=Msa1416200-mRNA-1:exon:22803;Parent=Msa1416200-mRNA-1 |
| tig0024333 | exon | 67706 | 67978 | 67706 | ID=Msa1416200-mRNA-1:exon:22804;Parent=Msa1416200-mRNA-1 |
| tig0024333 | exon | 68129 | 68250 | 68129 | ID=Msa1416200-mRNA-1:exon:22805;Parent=Msa1416200-mRNA-1 |
| tig0024333 | exon | 68374 | 68517 | 68374 | ID=Msa1416200-mRNA-1:exon:22806;Parent=Msa1416200-mRNA-1 |
| tig0024333 | exon | 68821 | 69477 | 68821 | ID=Msa1416200-mRNA-1:exon:22807;Parent=Msa1416200-mRNA-1 |
| tig0024333 | CDS | 67018 | 67303 | 67018 | ID=Msa1416200-mRNA-1:cds;Parent=Msa1416200-mRNA-1 |
| tig0024333 | CDS | 67416 | 67556 | 67416 | ID=Msa1416200-mRNA-1:cds;Parent=Msa1416200-mRNA-1 |
| tig0024333 | CDS | 67706 | 67978 | 67706 | ID=Msa1416200-mRNA-1:cds;Parent=Msa1416200-mRNA-1 |
| tig0024333 | CDS | 68129 | 68250 | 68129 | ID=Msa1416200-mRNA-1:cds;Parent=Msa1416200-mRNA-1 |
| tig0024333 | CDS | 68374 | 68517 | 68374 | ID=Msa1416200-mRNA-1:cds;Parent=Msa1416200-mRNA-1 |
| tig0024333 | CDS | 68821 | 69477 | 68821 | ID=Msa1416200-mRNA-1:cds;Parent=Msa1416200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
