Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046440 | sp|Q54I39|IST1L_DICDI | 30.726 | 179 | 113 | 4 | 9 | 183 | 4 | 175 | 4.01e-16 | 82.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046440 | Msa0090200 | 0.964561 | 1.756733e-123 | -8.615850e-47 |
| Msa0046440 | Msa0137750 | 0.961710 | 5.099208e-120 | -8.615850e-47 |
| Msa0046440 | Msa0182830 | 0.972202 | 2.207796e-134 | -8.615850e-47 |
| Msa0046440 | Msa0471930 | 0.807350 | 5.276592e-50 | -8.615850e-47 |
| Msa0046440 | Msa0516570 | 0.805145 | 1.537438e-49 | -8.615850e-47 |
| Msa0046440 | Msa1017160 | 0.803313 | 3.700965e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046440 | MtrunA17_Chr1g0210081 | 91.176 | 374 | 30 | 3 | 1 | 372 | 1 | 373 | 0.0 | 623 |
| Msa0046440 | MtrunA17_Chr7g0214961 | 46.269 | 201 | 106 | 2 | 7 | 207 | 2 | 200 | 9.50e-54 | 183 |
| Msa0046440 | MtrunA17_Chr1g0209771 | 40.782 | 179 | 105 | 1 | 5 | 183 | 4 | 181 | 2.66e-40 | 145 |
| Msa0046440 | MtrunA17_Chr8g0370931 | 41.243 | 177 | 103 | 1 | 7 | 183 | 20 | 195 | 4.50e-40 | 147 |
| Msa0046440 | MtrunA17_Chr6g0487991 | 36.932 | 176 | 110 | 1 | 8 | 183 | 1 | 175 | 6.47e-36 | 139 |
| Msa0046440 | MtrunA17_Chr6g0464791 | 36.181 | 199 | 122 | 2 | 5 | 203 | 4 | 197 | 6.66e-34 | 132 |
| Msa0046440 | MtrunA17_Chr2g0324121 | 32.418 | 182 | 121 | 2 | 5 | 186 | 2 | 181 | 9.29e-26 | 108 |
| Msa0046440 | MtrunA17_Chr4g0042021 | 31.250 | 176 | 119 | 2 | 8 | 183 | 1 | 174 | 2.08e-24 | 103 |
| Msa0046440 | MtrunA17_Chr8g0390551 | 30.387 | 181 | 111 | 5 | 5 | 183 | 2 | 169 | 1.43e-16 | 81.3 |
| Msa0046440 | MtrunA17_Chr4g0004491 | 25.478 | 157 | 106 | 3 | 27 | 183 | 26 | 171 | 2.55e-14 | 73.6 |
| Msa0046440 | MtrunA17_Chr2g0331801 | 26.946 | 167 | 112 | 2 | 17 | 183 | 13 | 169 | 2.76e-14 | 73.9 |
| Msa0046440 | MtrunA17_Chr6g0485461 | 29.282 | 181 | 113 | 4 | 5 | 183 | 58 | 225 | 4.61e-13 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046440 | AT1G13340.1 | 58.484 | 277 | 104 | 5 | 1 | 274 | 1 | 269 | 7.93e-86 | 266 |
| Msa0046440 | AT1G34220.2 | 37.989 | 179 | 110 | 1 | 5 | 183 | 4 | 181 | 3.78e-36 | 139 |
| Msa0046440 | AT4G35730.1 | 35.025 | 197 | 123 | 2 | 7 | 203 | 20 | 211 | 2.08e-35 | 135 |
| Msa0046440 | AT1G25420.1 | 36.872 | 179 | 112 | 1 | 5 | 183 | 4 | 181 | 1.06e-34 | 130 |
| Msa0046440 | AT2G19710.1 | 36.898 | 187 | 111 | 2 | 5 | 188 | 1 | 183 | 3.50e-33 | 131 |
| Msa0046440 | AT4G29440.1 | 33.880 | 183 | 120 | 1 | 8 | 190 | 4 | 185 | 2.73e-31 | 126 |
| Msa0046440 | AT1G34220.1 | 32.536 | 209 | 110 | 2 | 5 | 183 | 4 | 211 | 1.16e-30 | 123 |
| Msa0046440 | AT1G25420.4 | 36.129 | 155 | 98 | 1 | 29 | 183 | 1 | 154 | 7.41e-29 | 114 |
| Msa0046440 | AT4G29440.2 | 31.847 | 157 | 106 | 1 | 34 | 190 | 2 | 157 | 2.07e-24 | 105 |
| Msa0046440 | AT2G14830.1 | 32.044 | 181 | 120 | 3 | 14 | 193 | 10 | 188 | 1.28e-23 | 101 |
| Msa0046440 | AT1G25420.3 | 37.500 | 112 | 70 | 0 | 72 | 183 | 2 | 113 | 9.09e-21 | 90.9 |
| Msa0046440 | AT1G25420.2 | 37.500 | 112 | 70 | 0 | 72 | 183 | 2 | 113 | 9.09e-21 | 90.9 |
| Msa0046440 | AT1G79910.1 | 26.860 | 242 | 154 | 6 | 5 | 236 | 2 | 230 | 9.71e-18 | 84.3 |
| Msa0046440 | AT1G52315.1 | 27.976 | 168 | 110 | 3 | 17 | 183 | 13 | 170 | 7.44e-17 | 81.3 |
| Msa0046440 | AT3G15490.1 | 29.936 | 157 | 103 | 4 | 40 | 191 | 2 | 156 | 4.73e-15 | 73.9 |
| Msa0046440 | AT4G32350.1 | 26.257 | 179 | 121 | 3 | 5 | 183 | 2 | 169 | 3.26e-14 | 74.7 |
| Msa0046440 | AT4G32350.3 | 26.257 | 179 | 121 | 3 | 5 | 183 | 2 | 169 | 3.26e-14 | 74.7 |
| Msa0046440 | AT1G79910.3 | 27.419 | 186 | 114 | 4 | 61 | 236 | 1 | 175 | 5.41e-13 | 69.7 |
| Msa0046440 | AT1G51900.1 | 27.879 | 165 | 113 | 4 | 27 | 187 | 25 | 187 | 1.49e-12 | 69.7 |
| Msa0046440 | AT1G79910.2 | 28.571 | 119 | 76 | 1 | 65 | 183 | 46 | 155 | 2.05e-12 | 68.2 |
| Msa0046440 | AT1G52315.2 | 30.357 | 112 | 68 | 2 | 73 | 183 | 18 | 120 | 2.24e-12 | 67.4 |
Find 73 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGACCATATTATTGTTAAA+AGG | 0.201436 | 1_1:+78595027 | None:intergenic |
| GCAATTCTTACTTCCAGATT+TGG | 0.245092 | 1_1:-78596440 | Msa0046440:CDS |
| TTCTTCTCCAAATCAATAAA+AGG | 0.286957 | 1_1:+78595265 | None:intergenic |
| CGTTTGTGTGCATACTGATA+TGG | 0.318953 | 1_1:-78597081 | Msa0046440:exon |
| CAATTCTTACTTCCAGATTT+GGG | 0.321923 | 1_1:-78596439 | Msa0046440:CDS |
| AGCGAATTCTTTCCCAAATC+TGG | 0.329351 | 1_1:+78596427 | None:intergenic |
| ATATAACACAAATATTTATA+AGG | 0.334595 | 1_1:+78595057 | None:intergenic |
| GTAATTAGTAGTTCAAATTC+AGG | 0.336423 | 1_1:-78595370 | Msa0046440:CDS |
| GCAGAAATTGAGGGTGGATC+AGG | 0.343145 | 1_1:-78595319 | Msa0046440:CDS |
| CTCGAAGGAGAGCGCGTTGA+TGG | 0.354073 | 1_1:+78596895 | None:intergenic |
| GTCGAGGGCTTAAACTATTA+TGG | 0.360017 | 1_1:+78595485 | None:intergenic |
| GTGAGGACTAAAAGGGTAAA+AGG | 0.374231 | 1_1:-78595232 | Msa0046440:CDS |
| TTCATTCTGCTTTCTAAGCT+CGG | 0.402672 | 1_1:+78596052 | None:intergenic |
| GGGTGGATCAGGGGTTGTAT+TGG | 0.405994 | 1_1:-78595308 | Msa0046440:CDS |
| CATCATCAGGATCATGTGAT+TGG | 0.411357 | 1_1:+78595512 | None:intergenic |
| AAAAGGTGCACTTTGCGTCT+TGG | 0.411661 | 1_1:+78595282 | None:intergenic |
| GCGCGAATCTCTTGAATCTC+TGG | 0.417625 | 1_1:+78596461 | None:intergenic |
| GAGAACAGCGAGGCGCGATA+TGG | 0.422855 | 1_1:+78596989 | None:intergenic |
| GAACTAGAGGAGGCAGCATC+AGG | 0.425606 | 1_1:-78596518 | Msa0046440:CDS |
| GCTGCCTCCTCTAGTTCATC+AGG | 0.439900 | 1_1:+78596524 | None:intergenic |
| AAGAAACTTGTTCAAGCTGC+AGG | 0.443858 | 1_1:+78595993 | None:intergenic |
| AGAGCGCGTTGATGGTTATC+GGG | 0.449113 | 1_1:+78596903 | None:intergenic |
| TAAATATTTGTGTTATATGT+TGG | 0.451931 | 1_1:-78595052 | Msa0046440:three_prime_UTR |
| TAAGAAACTTGATGCATTGT+TGG | 0.456342 | 1_1:-78597057 | Msa0046440:CDS |
| TGAAGGATACTTCAACCTCT+TGG | 0.461109 | 1_1:-78596691 | Msa0046440:CDS |
| GAGAGCGCGTTGATGGTTAT+CGG | 0.467570 | 1_1:+78596902 | None:intergenic |
| CTATTATGGTCATCATCATC+AGG | 0.477073 | 1_1:+78595499 | None:intergenic |
| AAGAAACTTGATGCATTGTT+GGG | 0.478579 | 1_1:-78597056 | Msa0046440:CDS |
| ACTTCAACCTCTTGGTTGAA+AGG | 0.496985 | 1_1:-78596683 | Msa0046440:CDS |
| AACACAAATATTTATAAGGA+TGG | 0.498780 | 1_1:+78595061 | None:intergenic |
| TGATGAGATTGTTGATTCAA+TGG | 0.501534 | 1_1:-78595344 | Msa0046440:CDS |
| AAGTTGAAGAACATCAGAAC+GGG | 0.505346 | 1_1:+78596935 | None:intergenic |
| TTCAATGGATGCAGAAATTG+AGG | 0.511664 | 1_1:-78595329 | Msa0046440:CDS |
| TTCCTTCATTAACTAAAATG+TGG | 0.521188 | 1_1:+78595668 | None:intergenic |
| CAGAAATTGAGGGTGGATCA+GGG | 0.522043 | 1_1:-78595318 | Msa0046440:CDS |
| GGATGTAGCTGATGCAGCAC+AGG | 0.522149 | 1_1:-78595599 | Msa0046440:CDS |
| TTTCTGATTCCTTTAAGGGT+AGG | 0.527084 | 1_1:-78595633 | Msa0046440:CDS |
| CCCTCGACCGAGAAAAGTGT+TGG | 0.535406 | 1_1:-78595470 | Msa0046440:CDS |
| AGCTGCTGCTAGAGCAGCTG+TGG | 0.537621 | 1_1:-78595548 | Msa0046440:CDS |
| GTTTGTGTGCATACTGATAT+GGG | 0.550075 | 1_1:-78597080 | Msa0046440:exon |
| AGCATCAGGAATACTGTTTG+CGG | 0.553304 | 1_1:-78596504 | Msa0046440:CDS |
| GAATGTTGAAGAGTTAGAGA+AGG | 0.555229 | 1_1:-78595392 | Msa0046440:CDS |
| GTTGATGGTTATCGGGGAGT+TGG | 0.556721 | 1_1:+78596910 | None:intergenic |
| ACAGGTTGAACATGTAATCA+AGG | 0.557110 | 1_1:-78596745 | Msa0046440:intron |
| GATATGGCGAGGTTAATAGT+AGG | 0.563177 | 1_1:+78597005 | None:intergenic |
| GAATACTGTTTGCGGCATCA+AGG | 0.573496 | 1_1:-78596496 | Msa0046440:CDS |
| ACCTTTGTTGTGCAATGAGG+TGG | 0.578404 | 1_1:+78596658 | None:intergenic |
| AATCAAGGAGCAGAATATGT+TGG | 0.578842 | 1_1:-78596730 | Msa0046440:CDS |
| AAATATTTATAAGGATGGAA+AGG | 0.581764 | 1_1:+78595066 | None:intergenic |
| CGACCGAGAAAAGTGTTGGA+TGG | 0.589800 | 1_1:-78595466 | Msa0046440:CDS |
| TTGACTTCTTCTCCTTTCAG+CGG | 0.591353 | 1_1:+78595418 | None:intergenic |
| GAGCTTAGAAAGCAGAATGA+AGG | 0.592266 | 1_1:-78596050 | Msa0046440:CDS |
| AAAGCTATGTCACCGCTGAA+AGG | 0.597904 | 1_1:-78595430 | Msa0046440:CDS |
| CACACCTTTGTTGTGCAATG+AGG | 0.599365 | 1_1:+78596655 | None:intergenic |
| CTGCACGTGCTATTGAGTTG+AGG | 0.601068 | 1_1:-78596406 | Msa0046440:CDS |
| GCAGGAACAAGTAACAAAGC+AGG | 0.603133 | 1_1:-78595737 | Msa0046440:intron |
| AGAATGTCCTGATGAACTAG+AGG | 0.611603 | 1_1:-78596531 | Msa0046440:CDS |
| CAATTGCAGAGTTCATCCTA+AGG | 0.615543 | 1_1:-78596381 | Msa0046440:intron |
| CTGTTTGCGGCATCAAGGTG+TGG | 0.616691 | 1_1:-78596491 | Msa0046440:CDS |
| CAGCGAGGCGCGATATGGCG+AGG | 0.621747 | 1_1:+78596994 | None:intergenic |
| TCCACCTCATTGCACAACAA+AGG | 0.626254 | 1_1:-78596659 | Msa0046440:intron |
| AGTTTCTTCAACTATAGATG+AGG | 0.634009 | 1_1:-78595978 | Msa0046440:intron |
| ATGTCCTGATGAACTAGAGG+AGG | 0.634563 | 1_1:-78596528 | Msa0046440:CDS |
| GATGTGTACGATGAAATTGA+AGG | 0.635872 | 1_1:-78596708 | Msa0046440:CDS |
| GAAGTTGAAGAACATCAGAA+CGG | 0.637848 | 1_1:+78596934 | None:intergenic |
| TATAGTGCTGAAATACGAGA+AGG | 0.638621 | 1_1:+78597123 | None:intergenic |
| AGAAATTGAGGGTGGATCAG+GGG | 0.651005 | 1_1:-78595317 | Msa0046440:CDS |
| GGTGGATCCTTTCAACCAAG+AGG | 0.656693 | 1_1:+78596676 | None:intergenic |
| ATGGATGCAGAAATTGAGGG+TGG | 0.668333 | 1_1:-78595325 | Msa0046440:CDS |
| TCAATGGATGCAGAAATTGA+GGG | 0.671279 | 1_1:-78595328 | Msa0046440:CDS |
| GAGCGCGTTGATGGTTATCG+GGG | 0.697526 | 1_1:+78596904 | None:intergenic |
| GTTGATTCTTGAGAACAGCG+AGG | 0.741523 | 1_1:+78596979 | None:intergenic |
| TAATCACAAAGCTTTCTACG+AGG | 0.778786 | 1_1:-78596078 | Msa0046440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAACACAAATATTTATA+AGG | + | chr1_1:78597107-78597126 | None:intergenic | 10.0% |
| !! | ATATAACACAAATATTTATA+AGG | + | chr1_1:78597107-78597126 | None:intergenic | 10.0% |
| !!! | ATCCTTTTGTTAAATATAAT+TGG | - | chr1_1:78595301-78595320 | Msa0046440:CDS | 15.0% |
| !!! | TAGAAACTTATTGAATTTTA+TGG | - | chr1_1:78595914-78595933 | Msa0046440:intron | 15.0% |
| !!! | AGAAACTTATTGAATTTTAT+GGG | - | chr1_1:78595915-78595934 | Msa0046440:intron | 15.0% |
| !! | TAAATATTTGTGTTATATGT+TGG | - | chr1_1:78597109-78597128 | Msa0046440:five_prime_UTR | 15.0% |
| !!! | ATCCTTTTGTTAAATATAAT+TGG | - | chr1_1:78595301-78595320 | Msa0046440:CDS | 15.0% |
| !!! | TAGAAACTTATTGAATTTTA+TGG | - | chr1_1:78595914-78595933 | Msa0046440:intron | 15.0% |
| !!! | AGAAACTTATTGAATTTTAT+GGG | - | chr1_1:78595915-78595934 | Msa0046440:intron | 15.0% |
| !! | TAAATATTTGTGTTATATGT+TGG | - | chr1_1:78597109-78597128 | Msa0046440:five_prime_UTR | 15.0% |
| !! | CTCCAATTATATTTAACAAA+AGG | + | chr1_1:78595306-78595325 | None:intergenic | 20.0% |
| !! | TGAAAAAATGTATATACCTT+AGG | + | chr1_1:78595799-78595818 | None:intergenic | 20.0% |
| !! | AAAAACAAAATTCCTCAAAA+AGG | + | chr1_1:78596010-78596029 | None:intergenic | 20.0% |
| !! | TTGAACAAAATTACTAAATG+AGG | - | chr1_1:78596383-78596402 | Msa0046440:CDS | 20.0% |
| !!! | AAGAATGTTTTATATGAATG+TGG | - | chr1_1:78596961-78596980 | Msa0046440:CDS | 20.0% |
| !! | AAATATTTATAAGGATGGAA+AGG | + | chr1_1:78597098-78597117 | None:intergenic | 20.0% |
| !! | AACACAAATATTTATAAGGA+TGG | + | chr1_1:78597103-78597122 | None:intergenic | 20.0% |
| !! | CTCCAATTATATTTAACAAA+AGG | + | chr1_1:78595306-78595325 | None:intergenic | 20.0% |
| !! | TGAAAAAATGTATATACCTT+AGG | + | chr1_1:78595799-78595818 | None:intergenic | 20.0% |
| !! | AAAAACAAAATTCCTCAAAA+AGG | + | chr1_1:78596010-78596029 | None:intergenic | 20.0% |
| !! | TTGAACAAAATTACTAAATG+AGG | - | chr1_1:78596383-78596402 | Msa0046440:CDS | 20.0% |
| !!! | AAGAATGTTTTATATGAATG+TGG | - | chr1_1:78596961-78596980 | Msa0046440:CDS | 20.0% |
| !! | AAATATTTATAAGGATGGAA+AGG | + | chr1_1:78597098-78597117 | None:intergenic | 20.0% |
| !! | AACACAAATATTTATAAGGA+TGG | + | chr1_1:78597103-78597122 | None:intergenic | 20.0% |
| ! | GATCATAATAAATTACTCGA+AGG | + | chr1_1:78595284-78595303 | None:intergenic | 25.0% |
| ! | TAAGTTTCTACAACAACAAA+AGG | + | chr1_1:78595904-78595923 | None:intergenic | 25.0% |
| ! | TTCCTTCATTAACTAAAATG+TGG | + | chr1_1:78596496-78596515 | None:intergenic | 25.0% |
| !! | TGAATTTTCTGATTCCTTTA+AGG | - | chr1_1:78596523-78596542 | Msa0046440:CDS | 25.0% |
| !! | GAATTTTCTGATTCCTTTAA+GGG | - | chr1_1:78596524-78596543 | Msa0046440:CDS | 25.0% |
| ! | GTAATTAGTAGTTCAAATTC+AGG | - | chr1_1:78596791-78596810 | Msa0046440:intron | 25.0% |
| ! | TTCTTCTCCAAATCAATAAA+AGG | + | chr1_1:78596899-78596918 | None:intergenic | 25.0% |
| !! | ATGCCTCAATCATAAATTTT+TGG | - | chr1_1:78597031-78597050 | Msa0046440:CDS | 25.0% |
| ! | AAGCCAAAAATTTATGATTG+AGG | + | chr1_1:78597037-78597056 | None:intergenic | 25.0% |
| !! | GGTTCCTTTTAACAATAATA+TGG | - | chr1_1:78597130-78597149 | Msa0046440:five_prime_UTR | 25.0% |
| ! | CTGACCATATTATTGTTAAA+AGG | + | chr1_1:78597137-78597156 | None:intergenic | 25.0% |
| ! | GATCATAATAAATTACTCGA+AGG | + | chr1_1:78595284-78595303 | None:intergenic | 25.0% |
| ! | TAAGTTTCTACAACAACAAA+AGG | + | chr1_1:78595904-78595923 | None:intergenic | 25.0% |
| ! | TTCCTTCATTAACTAAAATG+TGG | + | chr1_1:78596496-78596515 | None:intergenic | 25.0% |
| !! | TGAATTTTCTGATTCCTTTA+AGG | - | chr1_1:78596523-78596542 | Msa0046440:CDS | 25.0% |
| !! | GAATTTTCTGATTCCTTTAA+GGG | - | chr1_1:78596524-78596543 | Msa0046440:CDS | 25.0% |
| ! | GTAATTAGTAGTTCAAATTC+AGG | - | chr1_1:78596791-78596810 | Msa0046440:intron | 25.0% |
| ! | TTCTTCTCCAAATCAATAAA+AGG | + | chr1_1:78596899-78596918 | None:intergenic | 25.0% |
| !! | ATGCCTCAATCATAAATTTT+TGG | - | chr1_1:78597031-78597050 | Msa0046440:CDS | 25.0% |
| ! | AAGCCAAAAATTTATGATTG+AGG | + | chr1_1:78597037-78597056 | None:intergenic | 25.0% |
| !! | GGTTCCTTTTAACAATAATA+TGG | - | chr1_1:78597130-78597149 | Msa0046440:five_prime_UTR | 25.0% |
| ! | CTGACCATATTATTGTTAAA+AGG | + | chr1_1:78597137-78597156 | None:intergenic | 25.0% |
| TAAGAAACTTGATGCATTGT+TGG | - | chr1_1:78595104-78595123 | Msa0046440:three_prime_UTR | 30.0% | |
| AAGAAACTTGATGCATTGTT+GGG | - | chr1_1:78595105-78595124 | Msa0046440:three_prime_UTR | 30.0% | |
| CAATTCTTACTTCCAGATTT+GGG | - | chr1_1:78595722-78595741 | Msa0046440:CDS | 30.0% | |
| TAATAAGCCTCAAATGTCAT+TGG | - | chr1_1:78595857-78595876 | Msa0046440:intron | 30.0% | |
| AGTTTCTTCAACTATAGATG+AGG | - | chr1_1:78596183-78596202 | Msa0046440:intron | 30.0% | |
| GTTTAGATTGACAGTAAGTT+TGG | - | chr1_1:78596250-78596269 | Msa0046440:intron | 30.0% | |
| !!! | GTCCACATTTTAGTTAATGA+AGG | - | chr1_1:78596491-78596510 | Msa0046440:CDS | 30.0% |
| !!! | ATACTTTTTCCTACCCTTAA+AGG | + | chr1_1:78596540-78596559 | None:intergenic | 30.0% |
| ! | TAAGGGTAGGAAAAAGTATA+AGG | - | chr1_1:78596541-78596560 | Msa0046440:intron | 30.0% |
| !! | TGATGAGATTGTTGATTCAA+TGG | - | chr1_1:78596817-78596836 | Msa0046440:intron | 30.0% |
| !! | AAGTGCACCTTTTATTGATT+TGG | - | chr1_1:78596889-78596908 | Msa0046440:intron | 30.0% |
| ! | ATTTTCAGTGAGGACTAAAA+GGG | - | chr1_1:78596922-78596941 | Msa0046440:CDS | 30.0% |
| TAAGAAACTTGATGCATTGT+TGG | - | chr1_1:78595104-78595123 | Msa0046440:three_prime_UTR | 30.0% | |
| AAGAAACTTGATGCATTGTT+GGG | - | chr1_1:78595105-78595124 | Msa0046440:three_prime_UTR | 30.0% | |
| CAATTCTTACTTCCAGATTT+GGG | - | chr1_1:78595722-78595741 | Msa0046440:CDS | 30.0% | |
| TAATAAGCCTCAAATGTCAT+TGG | - | chr1_1:78595857-78595876 | Msa0046440:intron | 30.0% | |
| AGTTTCTTCAACTATAGATG+AGG | - | chr1_1:78596183-78596202 | Msa0046440:intron | 30.0% | |
| GTTTAGATTGACAGTAAGTT+TGG | - | chr1_1:78596250-78596269 | Msa0046440:intron | 30.0% | |
| !!! | GTCCACATTTTAGTTAATGA+AGG | - | chr1_1:78596491-78596510 | Msa0046440:CDS | 30.0% |
| !!! | ATACTTTTTCCTACCCTTAA+AGG | + | chr1_1:78596540-78596559 | None:intergenic | 30.0% |
| ! | TAAGGGTAGGAAAAAGTATA+AGG | - | chr1_1:78596541-78596560 | Msa0046440:intron | 30.0% |
| !! | TGATGAGATTGTTGATTCAA+TGG | - | chr1_1:78596817-78596836 | Msa0046440:intron | 30.0% |
| !! | AAGTGCACCTTTTATTGATT+TGG | - | chr1_1:78596889-78596908 | Msa0046440:intron | 30.0% |
| ! | ATTTTCAGTGAGGACTAAAA+GGG | - | chr1_1:78596922-78596941 | Msa0046440:CDS | 30.0% |
| ! | TATAGTGCTGAAATACGAGA+AGG | + | chr1_1:78595041-78595060 | None:intergenic | 35.0% |
| GTTTGTGTGCATACTGATAT+GGG | - | chr1_1:78595081-78595100 | Msa0046440:three_prime_UTR | 35.0% | |
| AAGTTGAAGAACATCAGAAC+GGG | + | chr1_1:78595229-78595248 | None:intergenic | 35.0% | |
| GAAGTTGAAGAACATCAGAA+CGG | + | chr1_1:78595230-78595249 | None:intergenic | 35.0% | |
| TCATCATTCTTGCTTTGTAC+AGG | - | chr1_1:78595398-78595417 | Msa0046440:CDS | 35.0% | |
| ! | ACAGGTTGAACATGTAATCA+AGG | - | chr1_1:78595416-78595435 | Msa0046440:CDS | 35.0% |
| AATCAAGGAGCAGAATATGT+TGG | - | chr1_1:78595431-78595450 | Msa0046440:CDS | 35.0% | |
| GATGTGTACGATGAAATTGA+AGG | - | chr1_1:78595453-78595472 | Msa0046440:CDS | 35.0% | |
| AAGCAATTGAAGTTGAACTG+AGG | + | chr1_1:78595534-78595553 | None:intergenic | 35.0% | |
| GCAATTCTTACTTCCAGATT+TGG | - | chr1_1:78595721-78595740 | Msa0046440:CDS | 35.0% | |
| ! | TAGAGTACCAATGACATTTG+AGG | + | chr1_1:78595867-78595886 | None:intergenic | 35.0% |
| ! | AAAAGCAGAGAACCTTTTTG+AGG | - | chr1_1:78595995-78596014 | Msa0046440:CDS | 35.0% |
| TAATCACAAAGCTTTCTACG+AGG | - | chr1_1:78596083-78596102 | Msa0046440:intron | 35.0% | |
| TTCATTCTGCTTTCTAAGCT+CGG | + | chr1_1:78596112-78596131 | None:intergenic | 35.0% | |
| ACAGTAAGTTTGGCAGAATA+AGG | - | chr1_1:78596260-78596279 | Msa0046440:intron | 35.0% | |
| CAAGTTTGACGAAATCATAC+TGG | + | chr1_1:78596343-78596362 | None:intergenic | 35.0% | |
| !! | TGATTTCGTCAAACTTGTTG+TGG | - | chr1_1:78596346-78596365 | Msa0046440:intron | 35.0% |
| TTGTTGTGAATTGTGAATGC+AGG | - | chr1_1:78596406-78596425 | Msa0046440:CDS | 35.0% | |
| ! | TTTCTGATTCCTTTAAGGGT+AGG | - | chr1_1:78596528-78596547 | Msa0046440:CDS | 35.0% |
| CTATTATGGTCATCATCATC+AGG | + | chr1_1:78596665-78596684 | None:intergenic | 35.0% | |
| GAATGTTGAAGAGTTAGAGA+AGG | - | chr1_1:78596769-78596788 | Msa0046440:intron | 35.0% | |
| TTCAATGGATGCAGAAATTG+AGG | - | chr1_1:78596832-78596851 | Msa0046440:intron | 35.0% | |
| TCAATGGATGCAGAAATTGA+GGG | - | chr1_1:78596833-78596852 | Msa0046440:intron | 35.0% | |
| ! | CTTTTAGTCCTCACTGAAAA+TGG | + | chr1_1:78596923-78596942 | None:intergenic | 35.0% |
| ! | CATTTTCAGTGAGGACTAAA+AGG | - | chr1_1:78596921-78596940 | Msa0046440:CDS | 35.0% |
| ! | TATAGTGCTGAAATACGAGA+AGG | + | chr1_1:78595041-78595060 | None:intergenic | 35.0% |
| GTTTGTGTGCATACTGATAT+GGG | - | chr1_1:78595081-78595100 | Msa0046440:three_prime_UTR | 35.0% | |
| AAGTTGAAGAACATCAGAAC+GGG | + | chr1_1:78595229-78595248 | None:intergenic | 35.0% | |
| GAAGTTGAAGAACATCAGAA+CGG | + | chr1_1:78595230-78595249 | None:intergenic | 35.0% | |
| TCATCATTCTTGCTTTGTAC+AGG | - | chr1_1:78595398-78595417 | Msa0046440:CDS | 35.0% | |
| ! | ACAGGTTGAACATGTAATCA+AGG | - | chr1_1:78595416-78595435 | Msa0046440:CDS | 35.0% |
| AATCAAGGAGCAGAATATGT+TGG | - | chr1_1:78595431-78595450 | Msa0046440:CDS | 35.0% | |
| GATGTGTACGATGAAATTGA+AGG | - | chr1_1:78595453-78595472 | Msa0046440:CDS | 35.0% | |
| AAGCAATTGAAGTTGAACTG+AGG | + | chr1_1:78595534-78595553 | None:intergenic | 35.0% | |
| GCAATTCTTACTTCCAGATT+TGG | - | chr1_1:78595721-78595740 | Msa0046440:CDS | 35.0% | |
| ! | TAGAGTACCAATGACATTTG+AGG | + | chr1_1:78595867-78595886 | None:intergenic | 35.0% |
| ! | AAAAGCAGAGAACCTTTTTG+AGG | - | chr1_1:78595995-78596014 | Msa0046440:CDS | 35.0% |
| TAATCACAAAGCTTTCTACG+AGG | - | chr1_1:78596083-78596102 | Msa0046440:intron | 35.0% | |
| TTCATTCTGCTTTCTAAGCT+CGG | + | chr1_1:78596112-78596131 | None:intergenic | 35.0% | |
| ACAGTAAGTTTGGCAGAATA+AGG | - | chr1_1:78596260-78596279 | Msa0046440:intron | 35.0% | |
| CAAGTTTGACGAAATCATAC+TGG | + | chr1_1:78596343-78596362 | None:intergenic | 35.0% | |
| !! | TGATTTCGTCAAACTTGTTG+TGG | - | chr1_1:78596346-78596365 | Msa0046440:intron | 35.0% |
| TTGTTGTGAATTGTGAATGC+AGG | - | chr1_1:78596406-78596425 | Msa0046440:CDS | 35.0% | |
| ! | TTTCTGATTCCTTTAAGGGT+AGG | - | chr1_1:78596528-78596547 | Msa0046440:CDS | 35.0% |
| CTATTATGGTCATCATCATC+AGG | + | chr1_1:78596665-78596684 | None:intergenic | 35.0% | |
| GAATGTTGAAGAGTTAGAGA+AGG | - | chr1_1:78596769-78596788 | Msa0046440:intron | 35.0% | |
| TTCAATGGATGCAGAAATTG+AGG | - | chr1_1:78596832-78596851 | Msa0046440:intron | 35.0% | |
| TCAATGGATGCAGAAATTGA+GGG | - | chr1_1:78596833-78596852 | Msa0046440:intron | 35.0% | |
| ! | CTTTTAGTCCTCACTGAAAA+TGG | + | chr1_1:78596923-78596942 | None:intergenic | 35.0% |
| ! | CATTTTCAGTGAGGACTAAA+AGG | - | chr1_1:78596921-78596940 | Msa0046440:CDS | 35.0% |
| CGTTTGTGTGCATACTGATA+TGG | - | chr1_1:78595080-78595099 | Msa0046440:three_prime_UTR | 40.0% | |
| GATATGGCGAGGTTAATAGT+AGG | + | chr1_1:78595159-78595178 | None:intergenic | 40.0% | |
| TGAAGGATACTTCAACCTCT+TGG | - | chr1_1:78595470-78595489 | Msa0046440:CDS | 40.0% | |
| ACTTCAACCTCTTGGTTGAA+AGG | - | chr1_1:78595478-78595497 | Msa0046440:CDS | 40.0% | |
| AGAATGTCCTGATGAACTAG+AGG | - | chr1_1:78595630-78595649 | Msa0046440:CDS | 40.0% | |
| AGCATCAGGAATACTGTTTG+CGG | - | chr1_1:78595657-78595676 | Msa0046440:CDS | 40.0% | |
| AGCGAATTCTTTCCCAAATC+TGG | + | chr1_1:78595737-78595756 | None:intergenic | 40.0% | |
| CAATTGCAGAGTTCATCCTA+AGG | - | chr1_1:78595780-78595799 | Msa0046440:intron | 40.0% | |
| GAGCTTAGAAAGCAGAATGA+AGG | - | chr1_1:78596111-78596130 | Msa0046440:intron | 40.0% | |
| ! | AAGAAACTTGTTCAAGCTGC+AGG | + | chr1_1:78596171-78596190 | None:intergenic | 40.0% |
| TGTAGTTCTCGCCAAAATCA+CGG | + | chr1_1:78596293-78596312 | None:intergenic | 40.0% | |
| ! | CCTTGATCTCAGATTTTTGC+TGG | + | chr1_1:78596460-78596479 | None:intergenic | 40.0% |
| ! | CCAGCAAAAATCTGAGATCA+AGG | - | chr1_1:78596457-78596476 | Msa0046440:CDS | 40.0% |
| CATCATCAGGATCATGTGAT+TGG | + | chr1_1:78596652-78596671 | None:intergenic | 40.0% | |
| GTCGAGGGCTTAAACTATTA+TGG | + | chr1_1:78596679-78596698 | None:intergenic | 40.0% | |
| ! | TGTCCATCCAACACTTTTCT+CGG | + | chr1_1:78596701-78596720 | None:intergenic | 40.0% |
| TTGACTTCTTCTCCTTTCAG+CGG | + | chr1_1:78596746-78596765 | None:intergenic | 40.0% | |
| !! | AGAAGAAGCCATTTTCAGTG+AGG | - | chr1_1:78596912-78596931 | Msa0046440:CDS | 40.0% |
| GTGAGGACTAAAAGGGTAAA+AGG | - | chr1_1:78596929-78596948 | Msa0046440:CDS | 40.0% | |
| CGTTTGTGTGCATACTGATA+TGG | - | chr1_1:78595080-78595099 | Msa0046440:three_prime_UTR | 40.0% | |
| GATATGGCGAGGTTAATAGT+AGG | + | chr1_1:78595159-78595178 | None:intergenic | 40.0% | |
| TGAAGGATACTTCAACCTCT+TGG | - | chr1_1:78595470-78595489 | Msa0046440:CDS | 40.0% | |
| ACTTCAACCTCTTGGTTGAA+AGG | - | chr1_1:78595478-78595497 | Msa0046440:CDS | 40.0% | |
| AGAATGTCCTGATGAACTAG+AGG | - | chr1_1:78595630-78595649 | Msa0046440:CDS | 40.0% | |
| AGCATCAGGAATACTGTTTG+CGG | - | chr1_1:78595657-78595676 | Msa0046440:CDS | 40.0% | |
| AGCGAATTCTTTCCCAAATC+TGG | + | chr1_1:78595737-78595756 | None:intergenic | 40.0% | |
| CAATTGCAGAGTTCATCCTA+AGG | - | chr1_1:78595780-78595799 | Msa0046440:intron | 40.0% | |
| GAGCTTAGAAAGCAGAATGA+AGG | - | chr1_1:78596111-78596130 | Msa0046440:intron | 40.0% | |
| ! | AAGAAACTTGTTCAAGCTGC+AGG | + | chr1_1:78596171-78596190 | None:intergenic | 40.0% |
| TGTAGTTCTCGCCAAAATCA+CGG | + | chr1_1:78596293-78596312 | None:intergenic | 40.0% | |
| ! | CCTTGATCTCAGATTTTTGC+TGG | + | chr1_1:78596460-78596479 | None:intergenic | 40.0% |
| ! | CCAGCAAAAATCTGAGATCA+AGG | - | chr1_1:78596457-78596476 | Msa0046440:CDS | 40.0% |
| CATCATCAGGATCATGTGAT+TGG | + | chr1_1:78596652-78596671 | None:intergenic | 40.0% | |
| GTCGAGGGCTTAAACTATTA+TGG | + | chr1_1:78596679-78596698 | None:intergenic | 40.0% | |
| ! | TGTCCATCCAACACTTTTCT+CGG | + | chr1_1:78596701-78596720 | None:intergenic | 40.0% |
| TTGACTTCTTCTCCTTTCAG+CGG | + | chr1_1:78596746-78596765 | None:intergenic | 40.0% | |
| !! | AGAAGAAGCCATTTTCAGTG+AGG | - | chr1_1:78596912-78596931 | Msa0046440:CDS | 40.0% |
| GTGAGGACTAAAAGGGTAAA+AGG | - | chr1_1:78596929-78596948 | Msa0046440:CDS | 40.0% | |
| ! | GTTGATTCTTGAGAACAGCG+AGG | + | chr1_1:78595185-78595204 | None:intergenic | 45.0% |
| TCCACCTCATTGCACAACAA+AGG | - | chr1_1:78595502-78595521 | Msa0046440:CDS | 45.0% | |
| ! | ACCTTTGTTGTGCAATGAGG+TGG | + | chr1_1:78595506-78595525 | None:intergenic | 45.0% |
| ! | CACACCTTTGTTGTGCAATG+AGG | + | chr1_1:78595509-78595528 | None:intergenic | 45.0% |
| ATGTCCTGATGAACTAGAGG+AGG | - | chr1_1:78595633-78595652 | Msa0046440:CDS | 45.0% | |
| GAATACTGTTTGCGGCATCA+AGG | - | chr1_1:78595665-78595684 | Msa0046440:CDS | 45.0% | |
| GCAGGAACAAGTAACAAAGC+AGG | - | chr1_1:78596424-78596443 | Msa0046440:CDS | 45.0% | |
| AAAGCTATGTCACCGCTGAA+AGG | - | chr1_1:78596731-78596750 | Msa0046440:CDS | 45.0% | |
| ATGGATGCAGAAATTGAGGG+TGG | - | chr1_1:78596836-78596855 | Msa0046440:intron | 45.0% | |
| CAGAAATTGAGGGTGGATCA+GGG | - | chr1_1:78596843-78596862 | Msa0046440:intron | 45.0% | |
| AGAAATTGAGGGTGGATCAG+GGG | - | chr1_1:78596844-78596863 | Msa0046440:intron | 45.0% | |
| ! | AAAAGGTGCACTTTGCGTCT+TGG | + | chr1_1:78596882-78596901 | None:intergenic | 45.0% |
| ! | GTTGATTCTTGAGAACAGCG+AGG | + | chr1_1:78595185-78595204 | None:intergenic | 45.0% |
| TCCACCTCATTGCACAACAA+AGG | - | chr1_1:78595502-78595521 | Msa0046440:CDS | 45.0% | |
| ! | ACCTTTGTTGTGCAATGAGG+TGG | + | chr1_1:78595506-78595525 | None:intergenic | 45.0% |
| ! | CACACCTTTGTTGTGCAATG+AGG | + | chr1_1:78595509-78595528 | None:intergenic | 45.0% |
| ATGTCCTGATGAACTAGAGG+AGG | - | chr1_1:78595633-78595652 | Msa0046440:CDS | 45.0% | |
| GAATACTGTTTGCGGCATCA+AGG | - | chr1_1:78595665-78595684 | Msa0046440:CDS | 45.0% | |
| GCAGGAACAAGTAACAAAGC+AGG | - | chr1_1:78596424-78596443 | Msa0046440:CDS | 45.0% | |
| AAAGCTATGTCACCGCTGAA+AGG | - | chr1_1:78596731-78596750 | Msa0046440:CDS | 45.0% | |
| ATGGATGCAGAAATTGAGGG+TGG | - | chr1_1:78596836-78596855 | Msa0046440:intron | 45.0% | |
| CAGAAATTGAGGGTGGATCA+GGG | - | chr1_1:78596843-78596862 | Msa0046440:intron | 45.0% | |
| AGAAATTGAGGGTGGATCAG+GGG | - | chr1_1:78596844-78596863 | Msa0046440:intron | 45.0% | |
| ! | AAAAGGTGCACTTTGCGTCT+TGG | + | chr1_1:78596882-78596901 | None:intergenic | 45.0% |
| !! | GTTGATGGTTATCGGGGAGT+TGG | + | chr1_1:78595254-78595273 | None:intergenic | 50.0% |
| !! | AGAGCGCGTTGATGGTTATC+GGG | + | chr1_1:78595261-78595280 | None:intergenic | 50.0% |
| !! | GAGAGCGCGTTGATGGTTAT+CGG | + | chr1_1:78595262-78595281 | None:intergenic | 50.0% |
| GGTGGATCCTTTCAACCAAG+AGG | + | chr1_1:78595488-78595507 | None:intergenic | 50.0% | |
| GCGCGAATCTCTTGAATCTC+TGG | + | chr1_1:78595703-78595722 | None:intergenic | 50.0% | |
| ! | CTGCACGTGCTATTGAGTTG+AGG | - | chr1_1:78595755-78595774 | Msa0046440:intron | 50.0% |
| AGTTCTCGCCAAAATCACGG+TGG | + | chr1_1:78596290-78596309 | None:intergenic | 50.0% | |
| ! | CCAACACTTTTCTCGGTCGA+GGG | + | chr1_1:78596694-78596713 | None:intergenic | 50.0% |
| ! | TCCAACACTTTTCTCGGTCG+AGG | + | chr1_1:78596695-78596714 | None:intergenic | 50.0% |
| !! | CGACCGAGAAAAGTGTTGGA+TGG | - | chr1_1:78596695-78596714 | Msa0046440:CDS | 50.0% |
| GCAGAAATTGAGGGTGGATC+AGG | - | chr1_1:78596842-78596861 | Msa0046440:intron | 50.0% | |
| !! | GTTGATGGTTATCGGGGAGT+TGG | + | chr1_1:78595254-78595273 | None:intergenic | 50.0% |
| !! | AGAGCGCGTTGATGGTTATC+GGG | + | chr1_1:78595261-78595280 | None:intergenic | 50.0% |
| !! | GAGAGCGCGTTGATGGTTAT+CGG | + | chr1_1:78595262-78595281 | None:intergenic | 50.0% |
| GGTGGATCCTTTCAACCAAG+AGG | + | chr1_1:78595488-78595507 | None:intergenic | 50.0% | |
| GCGCGAATCTCTTGAATCTC+TGG | + | chr1_1:78595703-78595722 | None:intergenic | 50.0% | |
| ! | CTGCACGTGCTATTGAGTTG+AGG | - | chr1_1:78595755-78595774 | Msa0046440:intron | 50.0% |
| AGTTCTCGCCAAAATCACGG+TGG | + | chr1_1:78596290-78596309 | None:intergenic | 50.0% | |
| ! | CCAACACTTTTCTCGGTCGA+GGG | + | chr1_1:78596694-78596713 | None:intergenic | 50.0% |
| ! | TCCAACACTTTTCTCGGTCG+AGG | + | chr1_1:78596695-78596714 | None:intergenic | 50.0% |
| !! | CGACCGAGAAAAGTGTTGGA+TGG | - | chr1_1:78596695-78596714 | Msa0046440:CDS | 50.0% |
| GCAGAAATTGAGGGTGGATC+AGG | - | chr1_1:78596842-78596861 | Msa0046440:intron | 50.0% | |
| !! | GAGCGCGTTGATGGTTATCG+GGG | + | chr1_1:78595260-78595279 | None:intergenic | 55.0% |
| ! | GCTGCCTCCTCTAGTTCATC+AGG | + | chr1_1:78595640-78595659 | None:intergenic | 55.0% |
| GAACTAGAGGAGGCAGCATC+AGG | - | chr1_1:78595643-78595662 | Msa0046440:CDS | 55.0% | |
| CTGTTTGCGGCATCAAGGTG+TGG | - | chr1_1:78595670-78595689 | Msa0046440:CDS | 55.0% | |
| ! | AAGGTGCGCCACCGTGATTT+TGG | - | chr1_1:78596279-78596298 | Msa0046440:intron | 55.0% |
| GGATGTAGCTGATGCAGCAC+AGG | - | chr1_1:78596562-78596581 | Msa0046440:intron | 55.0% | |
| ! | CCCTCGACCGAGAAAAGTGT+TGG | - | chr1_1:78596691-78596710 | Msa0046440:CDS | 55.0% |
| GGGTGGATCAGGGGTTGTAT+TGG | - | chr1_1:78596853-78596872 | Msa0046440:intron | 55.0% | |
| !! | GAGCGCGTTGATGGTTATCG+GGG | + | chr1_1:78595260-78595279 | None:intergenic | 55.0% |
| ! | GCTGCCTCCTCTAGTTCATC+AGG | + | chr1_1:78595640-78595659 | None:intergenic | 55.0% |
| GAACTAGAGGAGGCAGCATC+AGG | - | chr1_1:78595643-78595662 | Msa0046440:CDS | 55.0% | |
| CTGTTTGCGGCATCAAGGTG+TGG | - | chr1_1:78595670-78595689 | Msa0046440:CDS | 55.0% | |
| ! | AAGGTGCGCCACCGTGATTT+TGG | - | chr1_1:78596279-78596298 | Msa0046440:intron | 55.0% |
| GGATGTAGCTGATGCAGCAC+AGG | - | chr1_1:78596562-78596581 | Msa0046440:intron | 55.0% | |
| ! | CCCTCGACCGAGAAAAGTGT+TGG | - | chr1_1:78596691-78596710 | Msa0046440:CDS | 55.0% |
| GGGTGGATCAGGGGTTGTAT+TGG | - | chr1_1:78596853-78596872 | Msa0046440:intron | 55.0% | |
| GAGAACAGCGAGGCGCGATA+TGG | + | chr1_1:78595175-78595194 | None:intergenic | 60.0% | |
| ! | CTCGAAGGAGAGCGCGTTGA+TGG | + | chr1_1:78595269-78595288 | None:intergenic | 60.0% |
| AGCTGCTGCTAGAGCAGCTG+TGG | - | chr1_1:78596613-78596632 | Msa0046440:intron | 60.0% | |
| GAGAACAGCGAGGCGCGATA+TGG | + | chr1_1:78595175-78595194 | None:intergenic | 60.0% | |
| ! | CTCGAAGGAGAGCGCGTTGA+TGG | + | chr1_1:78595269-78595288 | None:intergenic | 60.0% |
| AGCTGCTGCTAGAGCAGCTG+TGG | - | chr1_1:78596613-78596632 | Msa0046440:intron | 60.0% | |
| CAGCGAGGCGCGATATGGCG+AGG | + | chr1_1:78595170-78595189 | None:intergenic | 70.0% | |
| CAGCGAGGCGCGATATGGCG+AGG | + | chr1_1:78595170-78595189 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 78595020 | 78597163 | 78595020 | ID=Msa0046440;Name=Msa0046440 |
| chr1_1 | mRNA | 78595020 | 78597163 | 78595020 | ID=Msa0046440-mRNA-1;Parent=Msa0046440;Name=Msa0046440-mRNA-1;_AED=0.03;_eAED=0.03;_QI=79|1|1|1|1|1|5|205|372 |
| chr1_1 | exon | 78595020 | 78595755 | 78595020 | ID=Msa0046440-mRNA-1:exon:27077;Parent=Msa0046440-mRNA-1 |
| chr1_1 | exon | 78595979 | 78596101 | 78595979 | ID=Msa0046440-mRNA-1:exon:27076;Parent=Msa0046440-mRNA-1 |
| chr1_1 | exon | 78596382 | 78596553 | 78596382 | ID=Msa0046440-mRNA-1:exon:27075;Parent=Msa0046440-mRNA-1 |
| chr1_1 | exon | 78596660 | 78596763 | 78596660 | ID=Msa0046440-mRNA-1:exon:27074;Parent=Msa0046440-mRNA-1 |
| chr1_1 | exon | 78596896 | 78597163 | 78596896 | ID=Msa0046440-mRNA-1:exon:27073;Parent=Msa0046440-mRNA-1 |
| chr1_1 | five_prime_UTR | 78597085 | 78597163 | 78597085 | ID=Msa0046440-mRNA-1:five_prime_utr;Parent=Msa0046440-mRNA-1 |
| chr1_1 | CDS | 78596896 | 78597084 | 78596896 | ID=Msa0046440-mRNA-1:cds;Parent=Msa0046440-mRNA-1 |
| chr1_1 | CDS | 78596660 | 78596763 | 78596660 | ID=Msa0046440-mRNA-1:cds;Parent=Msa0046440-mRNA-1 |
| chr1_1 | CDS | 78596382 | 78596553 | 78596382 | ID=Msa0046440-mRNA-1:cds;Parent=Msa0046440-mRNA-1 |
| chr1_1 | CDS | 78595979 | 78596101 | 78595979 | ID=Msa0046440-mRNA-1:cds;Parent=Msa0046440-mRNA-1 |
| chr1_1 | CDS | 78595225 | 78595755 | 78595225 | ID=Msa0046440-mRNA-1:cds;Parent=Msa0046440-mRNA-1 |
| chr1_1 | three_prime_UTR | 78595020 | 78595224 | 78595020 | ID=Msa0046440-mRNA-1:three_prime_utr;Parent=Msa0046440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
