Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0090200 | XP_013470208.1 | 91.176 | 374 | 30 | 3 | 1 | 372 | 1 | 373 | 0.0 | 623 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0090200 | sp|Q54I39|IST1L_DICDI | 30.168 | 179 | 114 | 4 | 9 | 183 | 4 | 175 | 1.96e-15 | 80.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0090200 | A0A072VRE2 | 91.176 | 374 | 30 | 3 | 1 | 372 | 1 | 373 | 0.0 | 623 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046440 | Msa0090200 | 0.964561 | 1.756733e-123 | -8.615850e-47 |
| Msa0090200 | Msa0137750 | 0.968325 | 1.619951e-128 | -8.615850e-47 |
| Msa0090200 | Msa0164250 | 0.802445 | 5.591097e-49 | -8.615850e-47 |
| Msa0090200 | Msa0182830 | 0.979596 | 2.571039e-148 | -8.615850e-47 |
| Msa0090200 | Msa0471930 | 0.822322 | 2.520798e-53 | -8.615850e-47 |
| Msa0090200 | Msa0490110 | 0.807370 | 5.225216e-50 | -8.615850e-47 |
| Msa0090200 | Msa0516570 | 0.820615 | 6.246201e-53 | -8.615850e-47 |
| Msa0090200 | Msa0608980 | 0.801308 | 9.571410e-49 | -8.615850e-47 |
| Msa0090200 | Msa1017160 | 0.810078 | 1.377990e-50 | -8.615850e-47 |
| Msa0090200 | Msa1428490 | 0.807688 | 4.474285e-50 | -8.615850e-47 |
| Msa0090200 | Msa1437450 | 0.805410 | 1.352829e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0090200 | MtrunA17_Chr1g0210081 | 91.176 | 374 | 30 | 3 | 1 | 372 | 1 | 373 | 0.0 | 623 |
| Msa0090200 | MtrunA17_Chr7g0214961 | 45.771 | 201 | 107 | 2 | 7 | 207 | 2 | 200 | 6.04e-53 | 181 |
| Msa0090200 | MtrunA17_Chr1g0209771 | 40.223 | 179 | 106 | 1 | 5 | 183 | 4 | 181 | 1.51e-39 | 143 |
| Msa0090200 | MtrunA17_Chr8g0370931 | 40.678 | 177 | 104 | 1 | 7 | 183 | 20 | 195 | 1.86e-39 | 145 |
| Msa0090200 | MtrunA17_Chr6g0487991 | 36.364 | 176 | 111 | 1 | 8 | 183 | 1 | 175 | 3.16e-35 | 137 |
| Msa0090200 | MtrunA17_Chr6g0464791 | 35.678 | 199 | 123 | 2 | 5 | 203 | 4 | 197 | 3.33e-33 | 130 |
| Msa0090200 | MtrunA17_Chr2g0324121 | 31.868 | 182 | 122 | 2 | 5 | 186 | 2 | 181 | 4.37e-25 | 106 |
| Msa0090200 | MtrunA17_Chr4g0042021 | 30.682 | 176 | 120 | 2 | 8 | 183 | 1 | 174 | 9.95e-24 | 101 |
| Msa0090200 | MtrunA17_Chr8g0390551 | 29.834 | 181 | 112 | 5 | 5 | 183 | 2 | 169 | 6.57e-16 | 79.3 |
| Msa0090200 | MtrunA17_Chr4g0004491 | 25.478 | 157 | 106 | 3 | 27 | 183 | 26 | 171 | 2.65e-14 | 73.6 |
| Msa0090200 | MtrunA17_Chr2g0331801 | 26.543 | 162 | 109 | 2 | 22 | 183 | 18 | 169 | 6.10e-14 | 72.8 |
| Msa0090200 | MtrunA17_Chr6g0485461 | 28.729 | 181 | 114 | 4 | 5 | 183 | 58 | 225 | 1.99e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0090200 | AT1G13340.1 | 58.123 | 277 | 105 | 5 | 1 | 274 | 1 | 269 | 5.47e-85 | 264 |
| Msa0090200 | AT1G34220.2 | 37.430 | 179 | 111 | 1 | 5 | 183 | 4 | 181 | 1.33e-35 | 137 |
| Msa0090200 | AT4G35730.1 | 34.518 | 197 | 124 | 2 | 7 | 203 | 20 | 211 | 1.13e-34 | 133 |
| Msa0090200 | AT1G25420.1 | 36.313 | 179 | 113 | 1 | 5 | 183 | 4 | 181 | 5.34e-34 | 128 |
| Msa0090200 | AT2G19710.1 | 36.364 | 187 | 112 | 2 | 5 | 188 | 1 | 183 | 1.65e-32 | 129 |
| Msa0090200 | AT4G29440.1 | 33.333 | 183 | 121 | 1 | 8 | 190 | 4 | 185 | 1.03e-30 | 124 |
| Msa0090200 | AT1G34220.1 | 32.057 | 209 | 111 | 2 | 5 | 183 | 4 | 211 | 5.17e-30 | 121 |
| Msa0090200 | AT1G25420.4 | 36.129 | 155 | 98 | 1 | 29 | 183 | 1 | 154 | 7.80e-29 | 114 |
| Msa0090200 | AT4G29440.2 | 31.847 | 157 | 106 | 1 | 34 | 190 | 2 | 157 | 2.09e-24 | 105 |
| Msa0090200 | AT2G14830.1 | 31.492 | 181 | 121 | 3 | 14 | 193 | 10 | 188 | 6.30e-23 | 99.4 |
| Msa0090200 | AT1G25420.3 | 37.500 | 112 | 70 | 0 | 72 | 183 | 2 | 113 | 8.82e-21 | 90.9 |
| Msa0090200 | AT1G25420.2 | 37.500 | 112 | 70 | 0 | 72 | 183 | 2 | 113 | 8.82e-21 | 90.9 |
| Msa0090200 | AT1G79910.1 | 26.446 | 242 | 155 | 6 | 5 | 236 | 2 | 230 | 4.05e-17 | 82.4 |
| Msa0090200 | AT1G52315.1 | 28.025 | 157 | 102 | 3 | 28 | 183 | 24 | 170 | 1.68e-16 | 80.1 |
| Msa0090200 | AT3G15490.1 | 29.936 | 157 | 103 | 4 | 40 | 191 | 2 | 156 | 5.11e-15 | 73.9 |
| Msa0090200 | AT4G32350.1 | 25.698 | 179 | 122 | 3 | 5 | 183 | 2 | 169 | 1.65e-13 | 72.4 |
| Msa0090200 | AT4G32350.3 | 25.698 | 179 | 122 | 3 | 5 | 183 | 2 | 169 | 1.65e-13 | 72.4 |
| Msa0090200 | AT1G79910.3 | 27.419 | 186 | 114 | 4 | 61 | 236 | 1 | 175 | 6.39e-13 | 69.3 |
| Msa0090200 | AT1G51900.1 | 27.879 | 165 | 113 | 4 | 27 | 187 | 25 | 187 | 1.65e-12 | 69.3 |
| Msa0090200 | AT1G79910.2 | 28.571 | 119 | 76 | 1 | 65 | 183 | 46 | 155 | 2.16e-12 | 68.2 |
| Msa0090200 | AT1G52315.2 | 30.357 | 112 | 68 | 2 | 73 | 183 | 18 | 120 | 2.18e-12 | 67.4 |
Find 73 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAATATTTGTGTTATATTT+TGG | 0.143820 | 1_2:-72087963 | Msa0090200:three_prime_UTR |
| CGTTTGTGTGCATACTAATA+TGG | 0.195173 | 1_2:-72089990 | Msa0090200:exon |
| CTGACCATATTATTGTTAAA+AGG | 0.201436 | 1_2:+72087938 | None:intergenic |
| GCAATTCTTACTTCCAGATT+TGG | 0.245092 | 1_2:-72089354 | Msa0090200:CDS |
| TTCTTCTCCAAATCAATAAA+AGG | 0.286957 | 1_2:+72088176 | None:intergenic |
| CAATTCTTACTTCCAGATTT+GGG | 0.321923 | 1_2:-72089353 | Msa0090200:CDS |
| AGCGAATTCTTTCCCAAATC+TGG | 0.329351 | 1_2:+72089341 | None:intergenic |
| GTGAGGACTAAAAGGGTAAA+AGG | 0.333239 | 1_2:-72088143 | Msa0090200:CDS |
| GTAATTAGTAGTTCAAATTC+AGG | 0.336423 | 1_2:-72088281 | Msa0090200:CDS |
| GCAGAAATTGAGGGTGGATC+AGG | 0.343145 | 1_2:-72088230 | Msa0090200:CDS |
| ATATAACACAAATATTTATA+AGG | 0.348308 | 1_2:+72087968 | None:intergenic |
| CTCGAAGGAGAGCGCGTTGA+TGG | 0.354073 | 1_2:+72089804 | None:intergenic |
| GTCGAGGGCTTAAACTATTA+TGG | 0.360017 | 1_2:+72088396 | None:intergenic |
| TTCATTCTGCTTTCTAAGCT+CGG | 0.402672 | 1_2:+72088966 | None:intergenic |
| GGGTGGATCAGGGGTTGTAT+TGG | 0.405994 | 1_2:-72088219 | Msa0090200:CDS |
| CATCATCAGGATCATGTGAT+TGG | 0.411357 | 1_2:+72088423 | None:intergenic |
| AAAAGGTGCACTTTGCGTCT+TGG | 0.411661 | 1_2:+72088193 | None:intergenic |
| GCGCGAATCTCTTGAATCTC+TGG | 0.417625 | 1_2:+72089375 | None:intergenic |
| GAGAACAGCGAGGCGCGATA+TGG | 0.422855 | 1_2:+72089898 | None:intergenic |
| GAACTAGAGGAGGCAGCATC+AGG | 0.425606 | 1_2:-72089432 | Msa0090200:CDS |
| GCTGCCTCCTCTAGTTCATC+AGG | 0.439900 | 1_2:+72089438 | None:intergenic |
| AAGAAACTTGTTCAAGCTGC+AGG | 0.443858 | 1_2:+72088907 | None:intergenic |
| GTTTGTGTGCATACTAATAT+GGG | 0.444112 | 1_2:-72089989 | Msa0090200:exon |
| AGAGCGCGTTGATGGTTATC+GGG | 0.449113 | 1_2:+72089812 | None:intergenic |
| TAAGAAACTTGATGCATTGT+TGG | 0.456342 | 1_2:-72089966 | Msa0090200:CDS |
| TGAAGGATACTTCAACCTCT+TGG | 0.461109 | 1_2:-72089600 | Msa0090200:CDS |
| GAGAGCGCGTTGATGGTTAT+CGG | 0.467570 | 1_2:+72089811 | None:intergenic |
| CTATTATGGTCATCATCATC+AGG | 0.477073 | 1_2:+72088410 | None:intergenic |
| AAGAAACTTGATGCATTGTT+GGG | 0.478579 | 1_2:-72089965 | Msa0090200:CDS |
| ACTTCAACCTCTTGGTTGAA+AGG | 0.496985 | 1_2:-72089592 | Msa0090200:CDS |
| AACACAAATATTTATAAGGA+TGG | 0.498780 | 1_2:+72087972 | None:intergenic |
| TGATGAGATTGTTGATTCAA+TGG | 0.501534 | 1_2:-72088255 | Msa0090200:CDS |
| AAGTTGAAGAACATCAGAAC+GGG | 0.505346 | 1_2:+72089844 | None:intergenic |
| TTCAATGGATGCAGAAATTG+AGG | 0.511664 | 1_2:-72088240 | Msa0090200:CDS |
| TTCCTTCATTAACTAAAATG+TGG | 0.521188 | 1_2:+72088579 | None:intergenic |
| CAGAAATTGAGGGTGGATCA+GGG | 0.522043 | 1_2:-72088229 | Msa0090200:CDS |
| GGATGTAGCTGATGCAGCAC+AGG | 0.522149 | 1_2:-72088510 | Msa0090200:CDS |
| TTTCTGATTCCTTTAAGGGT+AGG | 0.527084 | 1_2:-72088544 | Msa0090200:CDS |
| CCCTCGACCGAGAAAAGTGT+TGG | 0.535406 | 1_2:-72088381 | Msa0090200:CDS |
| AGCTGCTGCTAGAGCAGCTG+TGG | 0.537621 | 1_2:-72088459 | Msa0090200:CDS |
| AGCATCAGGAATACTGTTTG+CGG | 0.553304 | 1_2:-72089418 | Msa0090200:CDS |
| GAATGTTGAAGAGTTAGAGA+AGG | 0.555229 | 1_2:-72088303 | Msa0090200:CDS |
| GTTGATGGTTATCGGGGAGT+TGG | 0.556721 | 1_2:+72089819 | None:intergenic |
| ACAGGTTGAACATGTAATCA+AGG | 0.557110 | 1_2:-72089654 | Msa0090200:intron |
| GATATGGCGAGGTTAATAGT+AGG | 0.563177 | 1_2:+72089914 | None:intergenic |
| GAATACTGTTTGCGGCATCA+AGG | 0.573496 | 1_2:-72089410 | Msa0090200:CDS |
| ACCTTTGTTGTGCAATGAGG+TGG | 0.578404 | 1_2:+72089567 | None:intergenic |
| AATCAAGGAGCAGAATATGT+TGG | 0.578842 | 1_2:-72089639 | Msa0090200:CDS |
| AAATATTTATAAGGATGGAA+AGG | 0.581764 | 1_2:+72087977 | None:intergenic |
| CGACCGAGAAAAGTGTTGGA+TGG | 0.589800 | 1_2:-72088377 | Msa0090200:CDS |
| TTGACTTCTTCTCCTTTCAG+CGG | 0.591353 | 1_2:+72088329 | None:intergenic |
| GAGCTTAGAAAGCAGAATGA+AGG | 0.592266 | 1_2:-72088964 | Msa0090200:CDS |
| AAAGCTATGTCACCGCTGAA+AGG | 0.597904 | 1_2:-72088341 | Msa0090200:CDS |
| CACACCTTTGTTGTGCAATG+AGG | 0.599365 | 1_2:+72089564 | None:intergenic |
| CTGCACGTGCTATTGAGTTG+AGG | 0.601068 | 1_2:-72089320 | Msa0090200:CDS |
| GCAGGAACAAGTAACAAAGC+AGG | 0.603133 | 1_2:-72088648 | Msa0090200:intron |
| AGAATGTCCTGATGAACTAG+AGG | 0.611603 | 1_2:-72089445 | Msa0090200:CDS |
| CAATTGCAGAGTTCATCCTA+AGG | 0.615543 | 1_2:-72089295 | Msa0090200:intron |
| CTGTTTGCGGCATCAAGGTG+TGG | 0.616691 | 1_2:-72089405 | Msa0090200:CDS |
| CAGCGAGGCGCGATATGGCG+AGG | 0.621747 | 1_2:+72089903 | None:intergenic |
| TCCACCTCATTGCACAACAA+AGG | 0.626254 | 1_2:-72089568 | Msa0090200:intron |
| AGTTTCTTCAACTATAGATG+AGG | 0.634009 | 1_2:-72088892 | Msa0090200:intron |
| ATGTCCTGATGAACTAGAGG+AGG | 0.634563 | 1_2:-72089442 | Msa0090200:CDS |
| GATGTGTACGATGAAATTGA+AGG | 0.635872 | 1_2:-72089617 | Msa0090200:CDS |
| GAAGTTGAAGAACATCAGAA+CGG | 0.637848 | 1_2:+72089843 | None:intergenic |
| TATAGTGCTGAAATACGAGA+AGG | 0.638621 | 1_2:+72090032 | None:intergenic |
| AGAAATTGAGGGTGGATCAG+GGG | 0.651005 | 1_2:-72088228 | Msa0090200:CDS |
| GGTGGATCCTTTCAACCAAG+AGG | 0.656693 | 1_2:+72089585 | None:intergenic |
| ATGGATGCAGAAATTGAGGG+TGG | 0.668333 | 1_2:-72088236 | Msa0090200:CDS |
| TCAATGGATGCAGAAATTGA+GGG | 0.671279 | 1_2:-72088239 | Msa0090200:CDS |
| GAGCGCGTTGATGGTTATCG+GGG | 0.697526 | 1_2:+72089813 | None:intergenic |
| GTTGATTCTTGAGAACAGCG+AGG | 0.741523 | 1_2:+72089888 | None:intergenic |
| TAATCACAAAGCTTTCTACG+AGG | 0.778786 | 1_2:-72088992 | Msa0090200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAACACAAATATTTATA+AGG | + | chr1_2:72090016-72090035 | None:intergenic | 10.0% |
| !!! | TAAATATTTGTGTTATATTT+TGG | - | chr1_2:72090018-72090037 | Msa0090200:five_prime_UTR | 10.0% |
| !! | ATATAACACAAATATTTATA+AGG | + | chr1_2:72090016-72090035 | None:intergenic | 10.0% |
| !!! | TAAATATTTGTGTTATATTT+TGG | - | chr1_2:72090018-72090037 | Msa0090200:five_prime_UTR | 10.0% |
| !!! | ATCCTTTTGTTAAATATAAT+TGG | - | chr1_2:72088212-72088231 | Msa0090200:CDS | 15.0% |
| !! | TGAAAAAATATATATACCTT+AGG | + | chr1_2:72088705-72088724 | None:intergenic | 15.0% |
| !!! | TAGAAACTTATTGAATTTTA+TGG | - | chr1_2:72088820-72088839 | Msa0090200:intron | 15.0% |
| !!! | AGAAACTTATTGAATTTTAT+GGG | - | chr1_2:72088821-72088840 | Msa0090200:intron | 15.0% |
| !!! | ATCCTTTTGTTAAATATAAT+TGG | - | chr1_2:72088212-72088231 | Msa0090200:CDS | 15.0% |
| !! | TGAAAAAATATATATACCTT+AGG | + | chr1_2:72088705-72088724 | None:intergenic | 15.0% |
| !!! | TAGAAACTTATTGAATTTTA+TGG | - | chr1_2:72088820-72088839 | Msa0090200:intron | 15.0% |
| !!! | AGAAACTTATTGAATTTTAT+GGG | - | chr1_2:72088821-72088840 | Msa0090200:intron | 15.0% |
| !! | CTCCAATTATATTTAACAAA+AGG | + | chr1_2:72088217-72088236 | None:intergenic | 20.0% |
| !! | AAAAACAAAATTCCTCAAAA+AGG | + | chr1_2:72088916-72088935 | None:intergenic | 20.0% |
| !! | TTGAACAAAATTACTAAATG+AGG | - | chr1_2:72089289-72089308 | Msa0090200:intron | 20.0% |
| !!! | AAGAATGTTTTATATGAATG+TGG | - | chr1_2:72089870-72089889 | Msa0090200:CDS | 20.0% |
| !! | AAATATTTATAAGGATGGAA+AGG | + | chr1_2:72090007-72090026 | None:intergenic | 20.0% |
| !! | AACACAAATATTTATAAGGA+TGG | + | chr1_2:72090012-72090031 | None:intergenic | 20.0% |
| !! | CTCCAATTATATTTAACAAA+AGG | + | chr1_2:72088217-72088236 | None:intergenic | 20.0% |
| !! | AAAAACAAAATTCCTCAAAA+AGG | + | chr1_2:72088916-72088935 | None:intergenic | 20.0% |
| !! | TTGAACAAAATTACTAAATG+AGG | - | chr1_2:72089289-72089308 | Msa0090200:intron | 20.0% |
| !!! | AAGAATGTTTTATATGAATG+TGG | - | chr1_2:72089870-72089889 | Msa0090200:CDS | 20.0% |
| !! | AAATATTTATAAGGATGGAA+AGG | + | chr1_2:72090007-72090026 | None:intergenic | 20.0% |
| !! | AACACAAATATTTATAAGGA+TGG | + | chr1_2:72090012-72090031 | None:intergenic | 20.0% |
| ! | GATCATAATAAATTACTCGA+AGG | + | chr1_2:72088195-72088214 | None:intergenic | 25.0% |
| ! | TAAGTTTCTACAACAACAAA+AGG | + | chr1_2:72088810-72088829 | None:intergenic | 25.0% |
| ! | TTCCTTCATTAACTAAAATG+TGG | + | chr1_2:72089405-72089424 | None:intergenic | 25.0% |
| !! | TGAATTTTCTGATTCCTTTA+AGG | - | chr1_2:72089432-72089451 | Msa0090200:CDS | 25.0% |
| !! | GAATTTTCTGATTCCTTTAA+GGG | - | chr1_2:72089433-72089452 | Msa0090200:CDS | 25.0% |
| ! | GTAATTAGTAGTTCAAATTC+AGG | - | chr1_2:72089700-72089719 | Msa0090200:intron | 25.0% |
| ! | TTCTTCTCCAAATCAATAAA+AGG | + | chr1_2:72089808-72089827 | None:intergenic | 25.0% |
| !! | ATGCCTCAATCATAAATTTT+TGG | - | chr1_2:72089940-72089959 | Msa0090200:CDS | 25.0% |
| ! | AAGCCAAAAATTTATGATTG+AGG | + | chr1_2:72089946-72089965 | None:intergenic | 25.0% |
| !! | GGTTCCTTTTAACAATAATA+TGG | - | chr1_2:72090039-72090058 | Msa0090200:five_prime_UTR | 25.0% |
| ! | CTGACCATATTATTGTTAAA+AGG | + | chr1_2:72090046-72090065 | None:intergenic | 25.0% |
| ! | GATCATAATAAATTACTCGA+AGG | + | chr1_2:72088195-72088214 | None:intergenic | 25.0% |
| ! | TAAGTTTCTACAACAACAAA+AGG | + | chr1_2:72088810-72088829 | None:intergenic | 25.0% |
| ! | TTCCTTCATTAACTAAAATG+TGG | + | chr1_2:72089405-72089424 | None:intergenic | 25.0% |
| !! | TGAATTTTCTGATTCCTTTA+AGG | - | chr1_2:72089432-72089451 | Msa0090200:CDS | 25.0% |
| !! | GAATTTTCTGATTCCTTTAA+GGG | - | chr1_2:72089433-72089452 | Msa0090200:CDS | 25.0% |
| ! | GTAATTAGTAGTTCAAATTC+AGG | - | chr1_2:72089700-72089719 | Msa0090200:intron | 25.0% |
| ! | TTCTTCTCCAAATCAATAAA+AGG | + | chr1_2:72089808-72089827 | None:intergenic | 25.0% |
| !! | ATGCCTCAATCATAAATTTT+TGG | - | chr1_2:72089940-72089959 | Msa0090200:CDS | 25.0% |
| ! | AAGCCAAAAATTTATGATTG+AGG | + | chr1_2:72089946-72089965 | None:intergenic | 25.0% |
| !! | GGTTCCTTTTAACAATAATA+TGG | - | chr1_2:72090039-72090058 | Msa0090200:five_prime_UTR | 25.0% |
| ! | CTGACCATATTATTGTTAAA+AGG | + | chr1_2:72090046-72090065 | None:intergenic | 25.0% |
| GTTTGTGTGCATACTAATAT+GGG | - | chr1_2:72087992-72088011 | Msa0090200:three_prime_UTR | 30.0% | |
| TAAGAAACTTGATGCATTGT+TGG | - | chr1_2:72088015-72088034 | Msa0090200:three_prime_UTR | 30.0% | |
| AAGAAACTTGATGCATTGTT+GGG | - | chr1_2:72088016-72088035 | Msa0090200:three_prime_UTR | 30.0% | |
| TAATCATTCTTGCTTTGTAC+AGG | - | chr1_2:72088309-72088328 | Msa0090200:CDS | 30.0% | |
| CAATTCTTACTTCCAGATTT+GGG | - | chr1_2:72088628-72088647 | Msa0090200:CDS | 30.0% | |
| TAATAAGCCTCAAATGTCAT+TGG | - | chr1_2:72088763-72088782 | Msa0090200:intron | 30.0% | |
| AGTTTCTTCAACTATAGATG+AGG | - | chr1_2:72089089-72089108 | Msa0090200:intron | 30.0% | |
| GTTTAGATTGACAGTAAGTT+TGG | - | chr1_2:72089156-72089175 | Msa0090200:intron | 30.0% | |
| !!! | GTCCACATTTTAGTTAATGA+AGG | - | chr1_2:72089400-72089419 | Msa0090200:CDS | 30.0% |
| !!! | ATACTTTTTCCTACCCTTAA+AGG | + | chr1_2:72089449-72089468 | None:intergenic | 30.0% |
| ! | TAAGGGTAGGAAAAAGTATA+AGG | - | chr1_2:72089450-72089469 | Msa0090200:intron | 30.0% |
| !! | TGATGAGATTGTTGATTCAA+TGG | - | chr1_2:72089726-72089745 | Msa0090200:intron | 30.0% |
| !! | AAGTGCACCTTTTATTGATT+TGG | - | chr1_2:72089798-72089817 | Msa0090200:intron | 30.0% |
| ! | ATTTTCAGTGAGGACTAAAA+GGG | - | chr1_2:72089831-72089850 | Msa0090200:CDS | 30.0% |
| GTTTGTGTGCATACTAATAT+GGG | - | chr1_2:72087992-72088011 | Msa0090200:three_prime_UTR | 30.0% | |
| TAAGAAACTTGATGCATTGT+TGG | - | chr1_2:72088015-72088034 | Msa0090200:three_prime_UTR | 30.0% | |
| AAGAAACTTGATGCATTGTT+GGG | - | chr1_2:72088016-72088035 | Msa0090200:three_prime_UTR | 30.0% | |
| TAATCATTCTTGCTTTGTAC+AGG | - | chr1_2:72088309-72088328 | Msa0090200:CDS | 30.0% | |
| CAATTCTTACTTCCAGATTT+GGG | - | chr1_2:72088628-72088647 | Msa0090200:CDS | 30.0% | |
| TAATAAGCCTCAAATGTCAT+TGG | - | chr1_2:72088763-72088782 | Msa0090200:intron | 30.0% | |
| AGTTTCTTCAACTATAGATG+AGG | - | chr1_2:72089089-72089108 | Msa0090200:intron | 30.0% | |
| GTTTAGATTGACAGTAAGTT+TGG | - | chr1_2:72089156-72089175 | Msa0090200:intron | 30.0% | |
| !!! | GTCCACATTTTAGTTAATGA+AGG | - | chr1_2:72089400-72089419 | Msa0090200:CDS | 30.0% |
| !!! | ATACTTTTTCCTACCCTTAA+AGG | + | chr1_2:72089449-72089468 | None:intergenic | 30.0% |
| ! | TAAGGGTAGGAAAAAGTATA+AGG | - | chr1_2:72089450-72089469 | Msa0090200:intron | 30.0% |
| !! | TGATGAGATTGTTGATTCAA+TGG | - | chr1_2:72089726-72089745 | Msa0090200:intron | 30.0% |
| !! | AAGTGCACCTTTTATTGATT+TGG | - | chr1_2:72089798-72089817 | Msa0090200:intron | 30.0% |
| ! | ATTTTCAGTGAGGACTAAAA+GGG | - | chr1_2:72089831-72089850 | Msa0090200:CDS | 30.0% |
| ! | TATAGTGCTGAAATACGAGA+AGG | + | chr1_2:72087952-72087971 | None:intergenic | 35.0% |
| CGTTTGTGTGCATACTAATA+TGG | - | chr1_2:72087991-72088010 | Msa0090200:three_prime_UTR | 35.0% | |
| AAGTTGAAGAACATCAGAAC+GGG | + | chr1_2:72088140-72088159 | None:intergenic | 35.0% | |
| GAAGTTGAAGAACATCAGAA+CGG | + | chr1_2:72088141-72088160 | None:intergenic | 35.0% | |
| ! | ACAGGTTGAACATGTAATCA+AGG | - | chr1_2:72088327-72088346 | Msa0090200:CDS | 35.0% |
| AATCAAGGAGCAGAATATGT+TGG | - | chr1_2:72088342-72088361 | Msa0090200:CDS | 35.0% | |
| GATGTGTACGATGAAATTGA+AGG | - | chr1_2:72088364-72088383 | Msa0090200:CDS | 35.0% | |
| AAGCAATTGAAGTTGAACTG+AGG | + | chr1_2:72088445-72088464 | None:intergenic | 35.0% | |
| GCAATTCTTACTTCCAGATT+TGG | - | chr1_2:72088627-72088646 | Msa0090200:CDS | 35.0% | |
| ! | TAGAGTACCAATGACATTTG+AGG | + | chr1_2:72088773-72088792 | None:intergenic | 35.0% |
| ! | AAAAGCAGAGAACCTTTTTG+AGG | - | chr1_2:72088901-72088920 | Msa0090200:CDS | 35.0% |
| TAATCACAAAGCTTTCTACG+AGG | - | chr1_2:72088989-72089008 | Msa0090200:CDS | 35.0% | |
| TTCATTCTGCTTTCTAAGCT+CGG | + | chr1_2:72089018-72089037 | None:intergenic | 35.0% | |
| ACAGTAAGTTTGGCAGAATA+AGG | - | chr1_2:72089166-72089185 | Msa0090200:intron | 35.0% | |
| CAAGTTTGACGAAATCATAC+TGG | + | chr1_2:72089249-72089268 | None:intergenic | 35.0% | |
| !! | TGATTTCGTCAAACTTGTTG+TGG | - | chr1_2:72089252-72089271 | Msa0090200:intron | 35.0% |
| TTGTGAATTGTGATCAATGC+AGG | - | chr1_2:72089315-72089334 | Msa0090200:CDS | 35.0% | |
| ! | TTTCTGATTCCTTTAAGGGT+AGG | - | chr1_2:72089437-72089456 | Msa0090200:CDS | 35.0% |
| CTATTATGGTCATCATCATC+AGG | + | chr1_2:72089574-72089593 | None:intergenic | 35.0% | |
| GAATGTTGAAGAGTTAGAGA+AGG | - | chr1_2:72089678-72089697 | Msa0090200:intron | 35.0% | |
| TTCAATGGATGCAGAAATTG+AGG | - | chr1_2:72089741-72089760 | Msa0090200:intron | 35.0% | |
| TCAATGGATGCAGAAATTGA+GGG | - | chr1_2:72089742-72089761 | Msa0090200:intron | 35.0% | |
| ! | CTTTTAGTCCTCACTGAAAA+TGG | + | chr1_2:72089832-72089851 | None:intergenic | 35.0% |
| ! | CATTTTCAGTGAGGACTAAA+AGG | - | chr1_2:72089830-72089849 | Msa0090200:CDS | 35.0% |
| ! | TATAGTGCTGAAATACGAGA+AGG | + | chr1_2:72087952-72087971 | None:intergenic | 35.0% |
| CGTTTGTGTGCATACTAATA+TGG | - | chr1_2:72087991-72088010 | Msa0090200:three_prime_UTR | 35.0% | |
| AAGTTGAAGAACATCAGAAC+GGG | + | chr1_2:72088140-72088159 | None:intergenic | 35.0% | |
| GAAGTTGAAGAACATCAGAA+CGG | + | chr1_2:72088141-72088160 | None:intergenic | 35.0% | |
| ! | ACAGGTTGAACATGTAATCA+AGG | - | chr1_2:72088327-72088346 | Msa0090200:CDS | 35.0% |
| AATCAAGGAGCAGAATATGT+TGG | - | chr1_2:72088342-72088361 | Msa0090200:CDS | 35.0% | |
| GATGTGTACGATGAAATTGA+AGG | - | chr1_2:72088364-72088383 | Msa0090200:CDS | 35.0% | |
| AAGCAATTGAAGTTGAACTG+AGG | + | chr1_2:72088445-72088464 | None:intergenic | 35.0% | |
| GCAATTCTTACTTCCAGATT+TGG | - | chr1_2:72088627-72088646 | Msa0090200:CDS | 35.0% | |
| ! | TAGAGTACCAATGACATTTG+AGG | + | chr1_2:72088773-72088792 | None:intergenic | 35.0% |
| ! | AAAAGCAGAGAACCTTTTTG+AGG | - | chr1_2:72088901-72088920 | Msa0090200:CDS | 35.0% |
| TAATCACAAAGCTTTCTACG+AGG | - | chr1_2:72088989-72089008 | Msa0090200:CDS | 35.0% | |
| TTCATTCTGCTTTCTAAGCT+CGG | + | chr1_2:72089018-72089037 | None:intergenic | 35.0% | |
| ACAGTAAGTTTGGCAGAATA+AGG | - | chr1_2:72089166-72089185 | Msa0090200:intron | 35.0% | |
| CAAGTTTGACGAAATCATAC+TGG | + | chr1_2:72089249-72089268 | None:intergenic | 35.0% | |
| !! | TGATTTCGTCAAACTTGTTG+TGG | - | chr1_2:72089252-72089271 | Msa0090200:intron | 35.0% |
| TTGTGAATTGTGATCAATGC+AGG | - | chr1_2:72089315-72089334 | Msa0090200:CDS | 35.0% | |
| ! | TTTCTGATTCCTTTAAGGGT+AGG | - | chr1_2:72089437-72089456 | Msa0090200:CDS | 35.0% |
| CTATTATGGTCATCATCATC+AGG | + | chr1_2:72089574-72089593 | None:intergenic | 35.0% | |
| GAATGTTGAAGAGTTAGAGA+AGG | - | chr1_2:72089678-72089697 | Msa0090200:intron | 35.0% | |
| TTCAATGGATGCAGAAATTG+AGG | - | chr1_2:72089741-72089760 | Msa0090200:intron | 35.0% | |
| TCAATGGATGCAGAAATTGA+GGG | - | chr1_2:72089742-72089761 | Msa0090200:intron | 35.0% | |
| ! | CTTTTAGTCCTCACTGAAAA+TGG | + | chr1_2:72089832-72089851 | None:intergenic | 35.0% |
| ! | CATTTTCAGTGAGGACTAAA+AGG | - | chr1_2:72089830-72089849 | Msa0090200:CDS | 35.0% |
| GATATGGCGAGGTTAATAGT+AGG | + | chr1_2:72088070-72088089 | None:intergenic | 40.0% | |
| TGAAGGATACTTCAACCTCT+TGG | - | chr1_2:72088381-72088400 | Msa0090200:CDS | 40.0% | |
| ACTTCAACCTCTTGGTTGAA+AGG | - | chr1_2:72088389-72088408 | Msa0090200:CDS | 40.0% | |
| AGAATGTCCTGATGAACTAG+AGG | - | chr1_2:72088536-72088555 | Msa0090200:CDS | 40.0% | |
| AGCATCAGGAATACTGTTTG+CGG | - | chr1_2:72088563-72088582 | Msa0090200:CDS | 40.0% | |
| AGCGAATTCTTTCCCAAATC+TGG | + | chr1_2:72088643-72088662 | None:intergenic | 40.0% | |
| CAATTGCAGAGTTCATCCTA+AGG | - | chr1_2:72088686-72088705 | Msa0090200:intron | 40.0% | |
| GAGCTTAGAAAGCAGAATGA+AGG | - | chr1_2:72089017-72089036 | Msa0090200:intron | 40.0% | |
| ! | AAGAAACTTGTTCAAGCTGC+AGG | + | chr1_2:72089077-72089096 | None:intergenic | 40.0% |
| TGTAGTTCTCGCCAAAATCA+CGG | + | chr1_2:72089199-72089218 | None:intergenic | 40.0% | |
| ! | CCTTGATCTCAGATTTTTGC+TGG | + | chr1_2:72089369-72089388 | None:intergenic | 40.0% |
| ! | CCAGCAAAAATCTGAGATCA+AGG | - | chr1_2:72089366-72089385 | Msa0090200:CDS | 40.0% |
| CATCATCAGGATCATGTGAT+TGG | + | chr1_2:72089561-72089580 | None:intergenic | 40.0% | |
| GTCGAGGGCTTAAACTATTA+TGG | + | chr1_2:72089588-72089607 | None:intergenic | 40.0% | |
| ! | TGTCCATCCAACACTTTTCT+CGG | + | chr1_2:72089610-72089629 | None:intergenic | 40.0% |
| TTGACTTCTTCTCCTTTCAG+CGG | + | chr1_2:72089655-72089674 | None:intergenic | 40.0% | |
| !! | AGAAGAAGCCATTTTCAGTG+AGG | - | chr1_2:72089821-72089840 | Msa0090200:CDS | 40.0% |
| GTGAGGACTAAAAGGGTAAA+AGG | - | chr1_2:72089838-72089857 | Msa0090200:CDS | 40.0% | |
| GATATGGCGAGGTTAATAGT+AGG | + | chr1_2:72088070-72088089 | None:intergenic | 40.0% | |
| TGAAGGATACTTCAACCTCT+TGG | - | chr1_2:72088381-72088400 | Msa0090200:CDS | 40.0% | |
| ACTTCAACCTCTTGGTTGAA+AGG | - | chr1_2:72088389-72088408 | Msa0090200:CDS | 40.0% | |
| AGAATGTCCTGATGAACTAG+AGG | - | chr1_2:72088536-72088555 | Msa0090200:CDS | 40.0% | |
| AGCATCAGGAATACTGTTTG+CGG | - | chr1_2:72088563-72088582 | Msa0090200:CDS | 40.0% | |
| AGCGAATTCTTTCCCAAATC+TGG | + | chr1_2:72088643-72088662 | None:intergenic | 40.0% | |
| CAATTGCAGAGTTCATCCTA+AGG | - | chr1_2:72088686-72088705 | Msa0090200:intron | 40.0% | |
| GAGCTTAGAAAGCAGAATGA+AGG | - | chr1_2:72089017-72089036 | Msa0090200:intron | 40.0% | |
| ! | AAGAAACTTGTTCAAGCTGC+AGG | + | chr1_2:72089077-72089096 | None:intergenic | 40.0% |
| TGTAGTTCTCGCCAAAATCA+CGG | + | chr1_2:72089199-72089218 | None:intergenic | 40.0% | |
| ! | CCTTGATCTCAGATTTTTGC+TGG | + | chr1_2:72089369-72089388 | None:intergenic | 40.0% |
| ! | CCAGCAAAAATCTGAGATCA+AGG | - | chr1_2:72089366-72089385 | Msa0090200:CDS | 40.0% |
| CATCATCAGGATCATGTGAT+TGG | + | chr1_2:72089561-72089580 | None:intergenic | 40.0% | |
| GTCGAGGGCTTAAACTATTA+TGG | + | chr1_2:72089588-72089607 | None:intergenic | 40.0% | |
| ! | TGTCCATCCAACACTTTTCT+CGG | + | chr1_2:72089610-72089629 | None:intergenic | 40.0% |
| TTGACTTCTTCTCCTTTCAG+CGG | + | chr1_2:72089655-72089674 | None:intergenic | 40.0% | |
| !! | AGAAGAAGCCATTTTCAGTG+AGG | - | chr1_2:72089821-72089840 | Msa0090200:CDS | 40.0% |
| GTGAGGACTAAAAGGGTAAA+AGG | - | chr1_2:72089838-72089857 | Msa0090200:CDS | 40.0% | |
| ! | GTTGATTCTTGAGAACAGCG+AGG | + | chr1_2:72088096-72088115 | None:intergenic | 45.0% |
| TCCACCTCATTGCACAACAA+AGG | - | chr1_2:72088413-72088432 | Msa0090200:CDS | 45.0% | |
| ! | ACCTTTGTTGTGCAATGAGG+TGG | + | chr1_2:72088417-72088436 | None:intergenic | 45.0% |
| ! | CACACCTTTGTTGTGCAATG+AGG | + | chr1_2:72088420-72088439 | None:intergenic | 45.0% |
| ATGTCCTGATGAACTAGAGG+AGG | - | chr1_2:72088539-72088558 | Msa0090200:CDS | 45.0% | |
| GAATACTGTTTGCGGCATCA+AGG | - | chr1_2:72088571-72088590 | Msa0090200:CDS | 45.0% | |
| GCAGGAACAAGTAACAAAGC+AGG | - | chr1_2:72089333-72089352 | Msa0090200:CDS | 45.0% | |
| AAAGCTATGTCACCGCTGAA+AGG | - | chr1_2:72089640-72089659 | Msa0090200:CDS | 45.0% | |
| ATGGATGCAGAAATTGAGGG+TGG | - | chr1_2:72089745-72089764 | Msa0090200:intron | 45.0% | |
| CAGAAATTGAGGGTGGATCA+GGG | - | chr1_2:72089752-72089771 | Msa0090200:intron | 45.0% | |
| AGAAATTGAGGGTGGATCAG+GGG | - | chr1_2:72089753-72089772 | Msa0090200:intron | 45.0% | |
| ! | AAAAGGTGCACTTTGCGTCT+TGG | + | chr1_2:72089791-72089810 | None:intergenic | 45.0% |
| ! | GTTGATTCTTGAGAACAGCG+AGG | + | chr1_2:72088096-72088115 | None:intergenic | 45.0% |
| TCCACCTCATTGCACAACAA+AGG | - | chr1_2:72088413-72088432 | Msa0090200:CDS | 45.0% | |
| ! | ACCTTTGTTGTGCAATGAGG+TGG | + | chr1_2:72088417-72088436 | None:intergenic | 45.0% |
| ! | CACACCTTTGTTGTGCAATG+AGG | + | chr1_2:72088420-72088439 | None:intergenic | 45.0% |
| ATGTCCTGATGAACTAGAGG+AGG | - | chr1_2:72088539-72088558 | Msa0090200:CDS | 45.0% | |
| GAATACTGTTTGCGGCATCA+AGG | - | chr1_2:72088571-72088590 | Msa0090200:CDS | 45.0% | |
| GCAGGAACAAGTAACAAAGC+AGG | - | chr1_2:72089333-72089352 | Msa0090200:CDS | 45.0% | |
| AAAGCTATGTCACCGCTGAA+AGG | - | chr1_2:72089640-72089659 | Msa0090200:CDS | 45.0% | |
| ATGGATGCAGAAATTGAGGG+TGG | - | chr1_2:72089745-72089764 | Msa0090200:intron | 45.0% | |
| CAGAAATTGAGGGTGGATCA+GGG | - | chr1_2:72089752-72089771 | Msa0090200:intron | 45.0% | |
| AGAAATTGAGGGTGGATCAG+GGG | - | chr1_2:72089753-72089772 | Msa0090200:intron | 45.0% | |
| ! | AAAAGGTGCACTTTGCGTCT+TGG | + | chr1_2:72089791-72089810 | None:intergenic | 45.0% |
| !! | GTTGATGGTTATCGGGGAGT+TGG | + | chr1_2:72088165-72088184 | None:intergenic | 50.0% |
| !! | AGAGCGCGTTGATGGTTATC+GGG | + | chr1_2:72088172-72088191 | None:intergenic | 50.0% |
| !! | GAGAGCGCGTTGATGGTTAT+CGG | + | chr1_2:72088173-72088192 | None:intergenic | 50.0% |
| GGTGGATCCTTTCAACCAAG+AGG | + | chr1_2:72088399-72088418 | None:intergenic | 50.0% | |
| GCGCGAATCTCTTGAATCTC+TGG | + | chr1_2:72088609-72088628 | None:intergenic | 50.0% | |
| ! | CTGCACGTGCTATTGAGTTG+AGG | - | chr1_2:72088661-72088680 | Msa0090200:intron | 50.0% |
| AGTTCTCGCCAAAATCACGG+TGG | + | chr1_2:72089196-72089215 | None:intergenic | 50.0% | |
| ! | CCAACACTTTTCTCGGTCGA+GGG | + | chr1_2:72089603-72089622 | None:intergenic | 50.0% |
| ! | TCCAACACTTTTCTCGGTCG+AGG | + | chr1_2:72089604-72089623 | None:intergenic | 50.0% |
| !! | CGACCGAGAAAAGTGTTGGA+TGG | - | chr1_2:72089604-72089623 | Msa0090200:CDS | 50.0% |
| GCAGAAATTGAGGGTGGATC+AGG | - | chr1_2:72089751-72089770 | Msa0090200:intron | 50.0% | |
| !! | GTTGATGGTTATCGGGGAGT+TGG | + | chr1_2:72088165-72088184 | None:intergenic | 50.0% |
| !! | AGAGCGCGTTGATGGTTATC+GGG | + | chr1_2:72088172-72088191 | None:intergenic | 50.0% |
| !! | GAGAGCGCGTTGATGGTTAT+CGG | + | chr1_2:72088173-72088192 | None:intergenic | 50.0% |
| GGTGGATCCTTTCAACCAAG+AGG | + | chr1_2:72088399-72088418 | None:intergenic | 50.0% | |
| GCGCGAATCTCTTGAATCTC+TGG | + | chr1_2:72088609-72088628 | None:intergenic | 50.0% | |
| ! | CTGCACGTGCTATTGAGTTG+AGG | - | chr1_2:72088661-72088680 | Msa0090200:intron | 50.0% |
| AGTTCTCGCCAAAATCACGG+TGG | + | chr1_2:72089196-72089215 | None:intergenic | 50.0% | |
| ! | CCAACACTTTTCTCGGTCGA+GGG | + | chr1_2:72089603-72089622 | None:intergenic | 50.0% |
| ! | TCCAACACTTTTCTCGGTCG+AGG | + | chr1_2:72089604-72089623 | None:intergenic | 50.0% |
| !! | CGACCGAGAAAAGTGTTGGA+TGG | - | chr1_2:72089604-72089623 | Msa0090200:CDS | 50.0% |
| GCAGAAATTGAGGGTGGATC+AGG | - | chr1_2:72089751-72089770 | Msa0090200:intron | 50.0% | |
| !! | GAGCGCGTTGATGGTTATCG+GGG | + | chr1_2:72088171-72088190 | None:intergenic | 55.0% |
| ! | GCTGCCTCCTCTAGTTCATC+AGG | + | chr1_2:72088546-72088565 | None:intergenic | 55.0% |
| GAACTAGAGGAGGCAGCATC+AGG | - | chr1_2:72088549-72088568 | Msa0090200:CDS | 55.0% | |
| CTGTTTGCGGCATCAAGGTG+TGG | - | chr1_2:72088576-72088595 | Msa0090200:CDS | 55.0% | |
| ! | AAGGTGCGCCACCGTGATTT+TGG | - | chr1_2:72089185-72089204 | Msa0090200:intron | 55.0% |
| GGATGTAGCTGATGCAGCAC+AGG | - | chr1_2:72089471-72089490 | Msa0090200:intron | 55.0% | |
| ! | CCCTCGACCGAGAAAAGTGT+TGG | - | chr1_2:72089600-72089619 | Msa0090200:CDS | 55.0% |
| GGGTGGATCAGGGGTTGTAT+TGG | - | chr1_2:72089762-72089781 | Msa0090200:intron | 55.0% | |
| !! | GAGCGCGTTGATGGTTATCG+GGG | + | chr1_2:72088171-72088190 | None:intergenic | 55.0% |
| ! | GCTGCCTCCTCTAGTTCATC+AGG | + | chr1_2:72088546-72088565 | None:intergenic | 55.0% |
| GAACTAGAGGAGGCAGCATC+AGG | - | chr1_2:72088549-72088568 | Msa0090200:CDS | 55.0% | |
| CTGTTTGCGGCATCAAGGTG+TGG | - | chr1_2:72088576-72088595 | Msa0090200:CDS | 55.0% | |
| ! | AAGGTGCGCCACCGTGATTT+TGG | - | chr1_2:72089185-72089204 | Msa0090200:intron | 55.0% |
| GGATGTAGCTGATGCAGCAC+AGG | - | chr1_2:72089471-72089490 | Msa0090200:intron | 55.0% | |
| ! | CCCTCGACCGAGAAAAGTGT+TGG | - | chr1_2:72089600-72089619 | Msa0090200:CDS | 55.0% |
| GGGTGGATCAGGGGTTGTAT+TGG | - | chr1_2:72089762-72089781 | Msa0090200:intron | 55.0% | |
| GAGAACAGCGAGGCGCGATA+TGG | + | chr1_2:72088086-72088105 | None:intergenic | 60.0% | |
| ! | CTCGAAGGAGAGCGCGTTGA+TGG | + | chr1_2:72088180-72088199 | None:intergenic | 60.0% |
| AGCTGCTGCTAGAGCAGCTG+TGG | - | chr1_2:72089522-72089541 | Msa0090200:intron | 60.0% | |
| GAGAACAGCGAGGCGCGATA+TGG | + | chr1_2:72088086-72088105 | None:intergenic | 60.0% | |
| ! | CTCGAAGGAGAGCGCGTTGA+TGG | + | chr1_2:72088180-72088199 | None:intergenic | 60.0% |
| AGCTGCTGCTAGAGCAGCTG+TGG | - | chr1_2:72089522-72089541 | Msa0090200:intron | 60.0% | |
| CAGCGAGGCGCGATATGGCG+AGG | + | chr1_2:72088081-72088100 | None:intergenic | 70.0% | |
| CAGCGAGGCGCGATATGGCG+AGG | + | chr1_2:72088081-72088100 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 72087931 | 72090072 | 72087931 | ID=Msa0090200;Name=Msa0090200 |
| chr1_2 | mRNA | 72087931 | 72090072 | 72087931 | ID=Msa0090200-mRNA-1;Parent=Msa0090200;Name=Msa0090200-mRNA-1;_AED=0.01;_eAED=0.01;_QI=79|1|1|1|1|1|5|205|372 |
| chr1_2 | exon | 72087931 | 72088666 | 72087931 | ID=Msa0090200-mRNA-1:exon:25016;Parent=Msa0090200-mRNA-1 |
| chr1_2 | exon | 72088893 | 72089015 | 72088893 | ID=Msa0090200-mRNA-1:exon:25015;Parent=Msa0090200-mRNA-1 |
| chr1_2 | exon | 72089296 | 72089467 | 72089296 | ID=Msa0090200-mRNA-1:exon:25014;Parent=Msa0090200-mRNA-1 |
| chr1_2 | exon | 72089569 | 72089672 | 72089569 | ID=Msa0090200-mRNA-1:exon:25013;Parent=Msa0090200-mRNA-1 |
| chr1_2 | exon | 72089805 | 72090072 | 72089805 | ID=Msa0090200-mRNA-1:exon:25012;Parent=Msa0090200-mRNA-1 |
| chr1_2 | five_prime_UTR | 72089994 | 72090072 | 72089994 | ID=Msa0090200-mRNA-1:five_prime_utr;Parent=Msa0090200-mRNA-1 |
| chr1_2 | CDS | 72089805 | 72089993 | 72089805 | ID=Msa0090200-mRNA-1:cds;Parent=Msa0090200-mRNA-1 |
| chr1_2 | CDS | 72089569 | 72089672 | 72089569 | ID=Msa0090200-mRNA-1:cds;Parent=Msa0090200-mRNA-1 |
| chr1_2 | CDS | 72089296 | 72089467 | 72089296 | ID=Msa0090200-mRNA-1:cds;Parent=Msa0090200-mRNA-1 |
| chr1_2 | CDS | 72088893 | 72089015 | 72088893 | ID=Msa0090200-mRNA-1:cds;Parent=Msa0090200-mRNA-1 |
| chr1_2 | CDS | 72088136 | 72088666 | 72088136 | ID=Msa0090200-mRNA-1:cds;Parent=Msa0090200-mRNA-1 |
| chr1_2 | three_prime_UTR | 72087931 | 72088135 | 72087931 | ID=Msa0090200-mRNA-1:three_prime_utr;Parent=Msa0090200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
