AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0137750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0137750 MtrunA17_Chr1g0210081 91.444 374 29 3 1 372 1 373 0.0 625
Msa0137750 MtrunA17_Chr7g0214961 46.269 201 106 2 7 207 2 200 9.50e-54 183
Msa0137750 MtrunA17_Chr1g0209771 40.782 179 105 1 5 183 4 181 3.15e-40 145
Msa0137750 MtrunA17_Chr8g0370931 41.243 177 103 1 7 183 20 195 4.89e-40 146
Msa0137750 MtrunA17_Chr6g0487991 36.932 176 110 1 8 183 1 175 6.35e-36 139
Msa0137750 MtrunA17_Chr6g0464791 36.181 199 122 2 5 203 4 197 6.93e-34 132
Msa0137750 MtrunA17_Chr2g0324121 32.418 182 121 2 5 186 2 181 9.74e-26 108
Msa0137750 MtrunA17_Chr4g0042021 31.250 176 119 2 8 183 1 174 2.27e-24 102
Msa0137750 MtrunA17_Chr8g0390551 30.387 181 111 5 5 183 2 169 1.64e-16 81.3
Msa0137750 MtrunA17_Chr4g0004491 25.478 157 106 3 27 183 26 171 2.88e-14 73.2
Msa0137750 MtrunA17_Chr2g0331801 26.946 167 112 2 17 183 13 169 2.89e-14 73.9
Msa0137750 MtrunA17_Chr6g0485461 29.282 181 113 4 5 183 58 225 5.28e-13 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0137750 AT1G13340.1 58.484 277 104 5 1 274 1 269 7.12e-86 266
Msa0137750 AT1G34220.2 37.989 179 110 1 5 183 4 181 3.33e-36 139
Msa0137750 AT4G35730.1 35.025 197 123 2 7 203 20 211 2.42e-35 135
Msa0137750 AT1G25420.1 36.872 179 112 1 5 183 4 181 1.14e-34 130
Msa0137750 AT2G19710.1 36.898 187 111 2 5 188 1 183 3.77e-33 131
Msa0137750 AT4G29440.1 33.880 183 120 1 8 190 4 185 2.75e-31 125
Msa0137750 AT1G34220.1 32.536 209 110 2 5 183 4 211 1.16e-30 123
Msa0137750 AT1G25420.4 36.129 155 98 1 29 183 1 154 8.37e-29 114
Msa0137750 AT4G29440.2 31.847 157 106 1 34 190 2 157 2.16e-24 105
Msa0137750 AT2G14830.1 32.044 181 120 3 14 193 10 188 1.24e-23 101
Msa0137750 AT1G25420.3 37.500 112 70 0 72 183 2 113 9.36e-21 90.9
Msa0137750 AT1G25420.2 37.500 112 70 0 72 183 2 113 9.36e-21 90.9
Msa0137750 AT1G79910.1 26.860 242 154 6 5 236 2 230 9.71e-18 84.3
Msa0137750 AT1G52315.1 27.976 168 110 3 17 183 13 170 7.66e-17 81.3
Msa0137750 AT3G15490.1 29.936 157 103 4 40 191 2 156 5.02e-15 73.9
Msa0137750 AT4G32350.1 26.257 179 121 3 5 183 2 169 3.53e-14 74.3
Msa0137750 AT4G32350.3 26.257 179 121 3 5 183 2 169 3.53e-14 74.3
Msa0137750 AT1G79910.3 27.419 186 114 4 61 236 1 175 5.88e-13 69.7
Msa0137750 AT1G51900.1 27.879 165 113 4 27 187 25 187 1.63e-12 69.3
Msa0137750 AT1G52315.2 30.357 112 68 2 73 183 18 120 2.14e-12 67.4
Msa0137750 AT1G79910.2 28.571 119 76 1 65 183 46 155 2.14e-12 68.2

Find 70 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAATATTTGTGTTATATTT+TGG 0.157222 1_3:+70364617 Msa0137750:three_prime_UTR
CGTTTGTGTGCATACTAATA+TGG 0.195173 1_3:+70362671 Msa0137750:exon
CTGACCATATTATTGTTAAA+AGG 0.201436 1_3:-70364642 None:intergenic
GCAATTCTTACTTCCAGATT+TGG 0.245092 1_3:+70363307 Msa0137750:CDS
TTCTTCTCCAAATCAATAAA+AGG 0.286957 1_3:-70364485 None:intergenic
CAATTCTTACTTCCAGATTT+GGG 0.321923 1_3:+70363308 Msa0137750:CDS
AGCGAATTCTTTCCCAAATC+TGG 0.329351 1_3:-70363320 None:intergenic
GTGAGGACTAAAAGGGTAAA+AGG 0.333239 1_3:+70364518 Msa0137750:CDS
GTAATTAGTAGTTCAAATTC+AGG 0.336423 1_3:+70364380 Msa0137750:CDS
GCAGAAATTGAGGGTGGATC+AGG 0.343145 1_3:+70364431 Msa0137750:CDS
CTCGAAGGAGAGCGCGTTGA+TGG 0.354073 1_3:-70362857 None:intergenic
GTCGAGGGCTTAAACTATTA+TGG 0.360017 1_3:-70364265 None:intergenic
TTCATTCTGCTTTCTAAGCT+CGG 0.402672 1_3:-70363695 None:intergenic
GGGTGGATCAGGGGTTGTAT+TGG 0.405994 1_3:+70364442 Msa0137750:CDS
CATCATCAGGATCATGTGAT+TGG 0.411357 1_3:-70364238 None:intergenic
AAAAGGTGCACTTTGCGTCT+TGG 0.411661 1_3:-70364468 None:intergenic
GCGCGAATCTCTTGAATCTC+TGG 0.417625 1_3:-70363286 None:intergenic
GAGAACAGCGAGGCGCGATA+TGG 0.422855 1_3:-70362763 None:intergenic
GAACTAGAGGAGGCAGCATC+AGG 0.425606 1_3:+70363229 Msa0137750:CDS
GCTGCCTCCTCTAGTTCATC+AGG 0.439900 1_3:-70363223 None:intergenic
AAGAAACTTGTTCAAGCTGC+AGG 0.443858 1_3:-70363754 None:intergenic
GTTTGTGTGCATACTAATAT+GGG 0.444112 1_3:+70362672 Msa0137750:exon
AGAGCGCGTTGATGGTTATC+GGG 0.449113 1_3:-70362849 None:intergenic
TAAGAAACTTGATGCATTGT+TGG 0.456342 1_3:+70362695 Msa0137750:CDS
TGAAGGATACTTCAACCTCT+TGG 0.461109 1_3:+70363061 Msa0137750:CDS
GAGAGCGCGTTGATGGTTAT+CGG 0.467570 1_3:-70362850 None:intergenic
CTATTATGGTCATCATCATC+AGG 0.477073 1_3:-70364251 None:intergenic
AAGAAACTTGATGCATTGTT+GGG 0.478579 1_3:+70362696 Msa0137750:CDS
ACTTCAACCTCTTGGTTGAA+AGG 0.496985 1_3:+70363069 Msa0137750:CDS
TGATGAGATTGTTGATTCAA+TGG 0.501534 1_3:+70364406 Msa0137750:CDS
AAGTTGAAGAACATCAGAAC+GGG 0.505346 1_3:-70362817 None:intergenic
TTCAATGGATGCAGAAATTG+AGG 0.511664 1_3:+70364421 Msa0137750:CDS
TTCCTTCATTAACTAAAATG+TGG 0.521188 1_3:-70364082 None:intergenic
CAGAAATTGAGGGTGGATCA+GGG 0.522043 1_3:+70364432 Msa0137750:CDS
GGATGTAGCTGATGCAGCAC+AGG 0.522149 1_3:+70364151 Msa0137750:CDS
TTTCTGATTCCTTTAAGGGT+AGG 0.527084 1_3:+70364117 Msa0137750:CDS
CCCTCGACCGAGAAAAGTGT+TGG 0.535406 1_3:+70364280 Msa0137750:CDS
AGCTGCTGCTAGAGCAGCTG+TGG 0.537621 1_3:+70364202 Msa0137750:CDS
AGCATCAGGAATACTGTTTG+CGG 0.553304 1_3:+70363243 Msa0137750:CDS
GAATGTTGAAGAGTTAGAGA+AGG 0.555229 1_3:+70364358 Msa0137750:CDS
GTTGATGGTTATCGGGGAGT+TGG 0.556721 1_3:-70362842 None:intergenic
ACAGGTTGAACATGTAATCA+AGG 0.557110 1_3:+70363007 Msa0137750:intron
GATATGGCGAGGTTAATAGT+AGG 0.563177 1_3:-70362747 None:intergenic
GAATACTGTTTGCGGCATCA+AGG 0.573496 1_3:+70363251 Msa0137750:CDS
ACCTTTGTTGTGCAATGAGG+TGG 0.578404 1_3:-70363094 None:intergenic
AATCAAGGAGCAGAATATGT+TGG 0.578842 1_3:+70363022 Msa0137750:CDS
CGACCGAGAAAAGTGTTGGA+TGG 0.589800 1_3:+70364284 Msa0137750:CDS
TTGACTTCTTCTCCTTTCAG+CGG 0.591353 1_3:-70364332 None:intergenic
GAGCTTAGAAAGCAGAATGA+AGG 0.592266 1_3:+70363697 Msa0137750:CDS
AAAGCTATGTCACCGCTGAA+AGG 0.597904 1_3:+70364320 Msa0137750:CDS
CACACCTTTGTTGTGCAATG+AGG 0.599365 1_3:-70363097 None:intergenic
CTGCACGTGCTATTGAGTTG+AGG 0.601068 1_3:+70363341 Msa0137750:CDS
GCAGGAACAAGTAACAAAGC+AGG 0.603133 1_3:+70364013 Msa0137750:intron
AGAATGTCCTGATGAACTAG+AGG 0.611603 1_3:+70363216 Msa0137750:CDS
CAATTGCAGAGTTCATCCTA+AGG 0.615543 1_3:+70363366 Msa0137750:CDS
CTGTTTGCGGCATCAAGGTG+TGG 0.616691 1_3:+70363256 Msa0137750:CDS
CAGCGAGGCGCGATATGGCG+AGG 0.621747 1_3:-70362758 None:intergenic
TCCACCTCATTGCACAACAA+AGG 0.626254 1_3:+70363093 Msa0137750:CDS
AGTTTCTTCAACTATAGATG+AGG 0.634009 1_3:+70363769 Msa0137750:CDS
ATGTCCTGATGAACTAGAGG+AGG 0.634563 1_3:+70363219 Msa0137750:CDS
GATGTGTACGATGAAATTGA+AGG 0.635872 1_3:+70363044 Msa0137750:CDS
GAAGTTGAAGAACATCAGAA+CGG 0.637848 1_3:-70362818 None:intergenic
TATAGTGCTGAAATACGAGA+AGG 0.638621 1_3:-70362629 None:intergenic
AGAAATTGAGGGTGGATCAG+GGG 0.651005 1_3:+70364433 Msa0137750:CDS
GGTGGATCCTTTCAACCAAG+AGG 0.656693 1_3:-70363076 None:intergenic
ATGGATGCAGAAATTGAGGG+TGG 0.668333 1_3:+70364425 Msa0137750:CDS
TCAATGGATGCAGAAATTGA+GGG 0.671279 1_3:+70364422 Msa0137750:CDS
GAGCGCGTTGATGGTTATCG+GGG 0.697526 1_3:-70362848 None:intergenic
GTTGATTCTTGAGAACAGCG+AGG 0.741523 1_3:-70362773 None:intergenic
TAATCACAAAGCTTTCTACG+AGG 0.778786 1_3:+70363669 Msa0137750:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATATTTGTGTTATATTT+TGG + chr1_3:70364617-70364636 Msa0137750:three_prime_UTR 10.0%
!!! TAAATATTTGTGTTATATTT+TGG + chr1_3:70364617-70364636 Msa0137750:three_prime_UTR 10.0%
!!! ATCCTTTTGTTAAATATAAT+TGG + chr1_3:70362892-70362911 Msa0137750:intron 15.0%
!! TGAAAAAAAATATATACCTT+AGG - chr1_3:70363385-70363404 None:intergenic 15.0%
!!! TAGAAACTTATTGAATTTTA+TGG + chr1_3:70363500-70363519 Msa0137750:intron 15.0%
!!! AGAAACTTATTGAATTTTAT+GGG + chr1_3:70363501-70363520 Msa0137750:intron 15.0%
!!! ATCCTTTTGTTAAATATAAT+TGG + chr1_3:70362892-70362911 Msa0137750:intron 15.0%
!! TGAAAAAAAATATATACCTT+AGG - chr1_3:70363385-70363404 None:intergenic 15.0%
!!! TAGAAACTTATTGAATTTTA+TGG + chr1_3:70363500-70363519 Msa0137750:intron 15.0%
!!! AGAAACTTATTGAATTTTAT+GGG + chr1_3:70363501-70363520 Msa0137750:intron 15.0%
!! CTCCAATTATATTTAACAAA+AGG - chr1_3:70362897-70362916 None:intergenic 20.0%
!! TTTATGATTACTTATTAGTG+CGG + chr1_3:70363548-70363567 Msa0137750:intron 20.0%
!! AAAAACAAAATTCCTCAAAA+AGG - chr1_3:70363596-70363615 None:intergenic 20.0%
!! TTGAACAAAATTACTAAATG+AGG + chr1_3:70363969-70363988 Msa0137750:intron 20.0%
!!! AAGAATGTTTTATATGAATG+TGG + chr1_3:70364550-70364569 Msa0137750:three_prime_UTR 20.0%
!! CTCCAATTATATTTAACAAA+AGG - chr1_3:70362897-70362916 None:intergenic 20.0%
!! TTTATGATTACTTATTAGTG+CGG + chr1_3:70363548-70363567 Msa0137750:intron 20.0%
!! AAAAACAAAATTCCTCAAAA+AGG - chr1_3:70363596-70363615 None:intergenic 20.0%
!! TTGAACAAAATTACTAAATG+AGG + chr1_3:70363969-70363988 Msa0137750:intron 20.0%
!!! AAGAATGTTTTATATGAATG+TGG + chr1_3:70364550-70364569 Msa0137750:three_prime_UTR 20.0%
! GATCATAATAAATTACTCGA+AGG - chr1_3:70362875-70362894 None:intergenic 25.0%
! TAAGTTTCTACAACAACAAA+AGG - chr1_3:70363490-70363509 None:intergenic 25.0%
! TTCCTTCATTAACTAAAATG+TGG - chr1_3:70364085-70364104 None:intergenic 25.0%
!! TGAATTTTCTGATTCCTTTA+AGG + chr1_3:70364112-70364131 Msa0137750:CDS 25.0%
!! GAATTTTCTGATTCCTTTAA+GGG + chr1_3:70364113-70364132 Msa0137750:CDS 25.0%
! GTAATTAGTAGTTCAAATTC+AGG + chr1_3:70364380-70364399 Msa0137750:CDS 25.0%
! TTCTTCTCCAAATCAATAAA+AGG - chr1_3:70364488-70364507 None:intergenic 25.0%
!! GGTTCCTTTTAACAATAATA+TGG + chr1_3:70364638-70364657 Msa0137750:three_prime_UTR 25.0%
! CTGACCATATTATTGTTAAA+AGG - chr1_3:70364645-70364664 None:intergenic 25.0%
! GATCATAATAAATTACTCGA+AGG - chr1_3:70362875-70362894 None:intergenic 25.0%
! TAAGTTTCTACAACAACAAA+AGG - chr1_3:70363490-70363509 None:intergenic 25.0%
! TTCCTTCATTAACTAAAATG+TGG - chr1_3:70364085-70364104 None:intergenic 25.0%
!! TGAATTTTCTGATTCCTTTA+AGG + chr1_3:70364112-70364131 Msa0137750:CDS 25.0%
!! GAATTTTCTGATTCCTTTAA+GGG + chr1_3:70364113-70364132 Msa0137750:CDS 25.0%
! GTAATTAGTAGTTCAAATTC+AGG + chr1_3:70364380-70364399 Msa0137750:CDS 25.0%
! TTCTTCTCCAAATCAATAAA+AGG - chr1_3:70364488-70364507 None:intergenic 25.0%
!! GGTTCCTTTTAACAATAATA+TGG + chr1_3:70364638-70364657 Msa0137750:three_prime_UTR 25.0%
! CTGACCATATTATTGTTAAA+AGG - chr1_3:70364645-70364664 None:intergenic 25.0%
GTTTGTGTGCATACTAATAT+GGG + chr1_3:70362672-70362691 Msa0137750:exon 30.0%
TAAGAAACTTGATGCATTGT+TGG + chr1_3:70362695-70362714 Msa0137750:CDS 30.0%
AAGAAACTTGATGCATTGTT+GGG + chr1_3:70362696-70362715 Msa0137750:CDS 30.0%
TAATCATTCTTGCTTTGTAC+AGG + chr1_3:70362989-70363008 Msa0137750:intron 30.0%
CAATTCTTACTTCCAGATTT+GGG + chr1_3:70363308-70363327 Msa0137750:CDS 30.0%
TAATAAGCCTCAAATGTCAT+TGG + chr1_3:70363443-70363462 Msa0137750:intron 30.0%
AGTTTCTTCAACTATAGATG+AGG + chr1_3:70363769-70363788 Msa0137750:CDS 30.0%
GTTTAGATTGACAGTAAGTT+TGG + chr1_3:70363836-70363855 Msa0137750:intron 30.0%
!!! GTCCACATTTTAGTTAATGA+AGG + chr1_3:70364080-70364099 Msa0137750:CDS 30.0%
!!! ATACTTTTTCCTACCCTTAA+AGG - chr1_3:70364129-70364148 None:intergenic 30.0%
! TAAGGGTAGGAAAAAGTATA+AGG + chr1_3:70364130-70364149 Msa0137750:CDS 30.0%
!! TGATGAGATTGTTGATTCAA+TGG + chr1_3:70364406-70364425 Msa0137750:CDS 30.0%
!! AAGTGCACCTTTTATTGATT+TGG + chr1_3:70364478-70364497 Msa0137750:CDS 30.0%
! ATTTTCAGTGAGGACTAAAA+GGG + chr1_3:70364511-70364530 Msa0137750:CDS 30.0%
GTTTGTGTGCATACTAATAT+GGG + chr1_3:70362672-70362691 Msa0137750:exon 30.0%
TAAGAAACTTGATGCATTGT+TGG + chr1_3:70362695-70362714 Msa0137750:CDS 30.0%
AAGAAACTTGATGCATTGTT+GGG + chr1_3:70362696-70362715 Msa0137750:CDS 30.0%
TAATCATTCTTGCTTTGTAC+AGG + chr1_3:70362989-70363008 Msa0137750:intron 30.0%
CAATTCTTACTTCCAGATTT+GGG + chr1_3:70363308-70363327 Msa0137750:CDS 30.0%
TAATAAGCCTCAAATGTCAT+TGG + chr1_3:70363443-70363462 Msa0137750:intron 30.0%
AGTTTCTTCAACTATAGATG+AGG + chr1_3:70363769-70363788 Msa0137750:CDS 30.0%
GTTTAGATTGACAGTAAGTT+TGG + chr1_3:70363836-70363855 Msa0137750:intron 30.0%
!!! GTCCACATTTTAGTTAATGA+AGG + chr1_3:70364080-70364099 Msa0137750:CDS 30.0%
!!! ATACTTTTTCCTACCCTTAA+AGG - chr1_3:70364129-70364148 None:intergenic 30.0%
! TAAGGGTAGGAAAAAGTATA+AGG + chr1_3:70364130-70364149 Msa0137750:CDS 30.0%
!! TGATGAGATTGTTGATTCAA+TGG + chr1_3:70364406-70364425 Msa0137750:CDS 30.0%
!! AAGTGCACCTTTTATTGATT+TGG + chr1_3:70364478-70364497 Msa0137750:CDS 30.0%
! ATTTTCAGTGAGGACTAAAA+GGG + chr1_3:70364511-70364530 Msa0137750:CDS 30.0%
! TATAGTGCTGAAATACGAGA+AGG - chr1_3:70362632-70362651 None:intergenic 35.0%
CGTTTGTGTGCATACTAATA+TGG + chr1_3:70362671-70362690 Msa0137750:exon 35.0%
AAGTTGAAGAACATCAGAAC+GGG - chr1_3:70362820-70362839 None:intergenic 35.0%
GAAGTTGAAGAACATCAGAA+CGG - chr1_3:70362821-70362840 None:intergenic 35.0%
! ACAGGTTGAACATGTAATCA+AGG + chr1_3:70363007-70363026 Msa0137750:intron 35.0%
AATCAAGGAGCAGAATATGT+TGG + chr1_3:70363022-70363041 Msa0137750:CDS 35.0%
GATGTGTACGATGAAATTGA+AGG + chr1_3:70363044-70363063 Msa0137750:CDS 35.0%
AAGCAATTGAAGTTGAACTG+AGG - chr1_3:70363125-70363144 None:intergenic 35.0%
GCAATTCTTACTTCCAGATT+TGG + chr1_3:70363307-70363326 Msa0137750:CDS 35.0%
! TAGAGTACCAATGACATTTG+AGG - chr1_3:70363453-70363472 None:intergenic 35.0%
! AAAAGCAGAGAACCTTTTTG+AGG + chr1_3:70363581-70363600 Msa0137750:intron 35.0%
TAATCACAAAGCTTTCTACG+AGG + chr1_3:70363669-70363688 Msa0137750:CDS 35.0%
TTCATTCTGCTTTCTAAGCT+CGG - chr1_3:70363698-70363717 None:intergenic 35.0%
ACAGTAAGTTTGGCAGAATA+AGG + chr1_3:70363846-70363865 Msa0137750:intron 35.0%
CAAGTTTGACGAAATCATAC+TGG - chr1_3:70363929-70363948 None:intergenic 35.0%
!! TGATTTCGTCAAACTTGTTG+TGG + chr1_3:70363932-70363951 Msa0137750:intron 35.0%
TTGTGAATTGTGATCAATGC+AGG + chr1_3:70363995-70364014 Msa0137750:intron 35.0%
! TTTCTGATTCCTTTAAGGGT+AGG + chr1_3:70364117-70364136 Msa0137750:CDS 35.0%
CTATTATGGTCATCATCATC+AGG - chr1_3:70364254-70364273 None:intergenic 35.0%
GAATGTTGAAGAGTTAGAGA+AGG + chr1_3:70364358-70364377 Msa0137750:CDS 35.0%
TTCAATGGATGCAGAAATTG+AGG + chr1_3:70364421-70364440 Msa0137750:CDS 35.0%
TCAATGGATGCAGAAATTGA+GGG + chr1_3:70364422-70364441 Msa0137750:CDS 35.0%
! CTTTTAGTCCTCACTGAAAA+TGG - chr1_3:70364512-70364531 None:intergenic 35.0%
! CATTTTCAGTGAGGACTAAA+AGG + chr1_3:70364510-70364529 Msa0137750:CDS 35.0%
! TATAGTGCTGAAATACGAGA+AGG - chr1_3:70362632-70362651 None:intergenic 35.0%
CGTTTGTGTGCATACTAATA+TGG + chr1_3:70362671-70362690 Msa0137750:exon 35.0%
AAGTTGAAGAACATCAGAAC+GGG - chr1_3:70362820-70362839 None:intergenic 35.0%
GAAGTTGAAGAACATCAGAA+CGG - chr1_3:70362821-70362840 None:intergenic 35.0%
! ACAGGTTGAACATGTAATCA+AGG + chr1_3:70363007-70363026 Msa0137750:intron 35.0%
AATCAAGGAGCAGAATATGT+TGG + chr1_3:70363022-70363041 Msa0137750:CDS 35.0%
GATGTGTACGATGAAATTGA+AGG + chr1_3:70363044-70363063 Msa0137750:CDS 35.0%
AAGCAATTGAAGTTGAACTG+AGG - chr1_3:70363125-70363144 None:intergenic 35.0%
GCAATTCTTACTTCCAGATT+TGG + chr1_3:70363307-70363326 Msa0137750:CDS 35.0%
! TAGAGTACCAATGACATTTG+AGG - chr1_3:70363453-70363472 None:intergenic 35.0%
! AAAAGCAGAGAACCTTTTTG+AGG + chr1_3:70363581-70363600 Msa0137750:intron 35.0%
TAATCACAAAGCTTTCTACG+AGG + chr1_3:70363669-70363688 Msa0137750:CDS 35.0%
TTCATTCTGCTTTCTAAGCT+CGG - chr1_3:70363698-70363717 None:intergenic 35.0%
ACAGTAAGTTTGGCAGAATA+AGG + chr1_3:70363846-70363865 Msa0137750:intron 35.0%
CAAGTTTGACGAAATCATAC+TGG - chr1_3:70363929-70363948 None:intergenic 35.0%
!! TGATTTCGTCAAACTTGTTG+TGG + chr1_3:70363932-70363951 Msa0137750:intron 35.0%
TTGTGAATTGTGATCAATGC+AGG + chr1_3:70363995-70364014 Msa0137750:intron 35.0%
! TTTCTGATTCCTTTAAGGGT+AGG + chr1_3:70364117-70364136 Msa0137750:CDS 35.0%
CTATTATGGTCATCATCATC+AGG - chr1_3:70364254-70364273 None:intergenic 35.0%
GAATGTTGAAGAGTTAGAGA+AGG + chr1_3:70364358-70364377 Msa0137750:CDS 35.0%
TTCAATGGATGCAGAAATTG+AGG + chr1_3:70364421-70364440 Msa0137750:CDS 35.0%
TCAATGGATGCAGAAATTGA+GGG + chr1_3:70364422-70364441 Msa0137750:CDS 35.0%
! CTTTTAGTCCTCACTGAAAA+TGG - chr1_3:70364512-70364531 None:intergenic 35.0%
! CATTTTCAGTGAGGACTAAA+AGG + chr1_3:70364510-70364529 Msa0137750:CDS 35.0%
GATATGGCGAGGTTAATAGT+AGG - chr1_3:70362750-70362769 None:intergenic 40.0%
TGAAGGATACTTCAACCTCT+TGG + chr1_3:70363061-70363080 Msa0137750:CDS 40.0%
ACTTCAACCTCTTGGTTGAA+AGG + chr1_3:70363069-70363088 Msa0137750:CDS 40.0%
AGAATGTCCTGATGAACTAG+AGG + chr1_3:70363216-70363235 Msa0137750:CDS 40.0%
AGCATCAGGAATACTGTTTG+CGG + chr1_3:70363243-70363262 Msa0137750:CDS 40.0%
AGCGAATTCTTTCCCAAATC+TGG - chr1_3:70363323-70363342 None:intergenic 40.0%
CAATTGCAGAGTTCATCCTA+AGG + chr1_3:70363366-70363385 Msa0137750:CDS 40.0%
GAGCTTAGAAAGCAGAATGA+AGG + chr1_3:70363697-70363716 Msa0137750:CDS 40.0%
! AAGAAACTTGTTCAAGCTGC+AGG - chr1_3:70363757-70363776 None:intergenic 40.0%
TGTAGTTCTCGCCAAAATCA+CGG - chr1_3:70363879-70363898 None:intergenic 40.0%
! CCTTGATCTCAGATTTTTGC+TGG - chr1_3:70364049-70364068 None:intergenic 40.0%
! CCAGCAAAAATCTGAGATCA+AGG + chr1_3:70364046-70364065 Msa0137750:CDS 40.0%
CATCATCAGGATCATGTGAT+TGG - chr1_3:70364241-70364260 None:intergenic 40.0%
GTCGAGGGCTTAAACTATTA+TGG - chr1_3:70364268-70364287 None:intergenic 40.0%
! TGTCCATCCAACACTTTTCT+CGG - chr1_3:70364290-70364309 None:intergenic 40.0%
TTGACTTCTTCTCCTTTCAG+CGG - chr1_3:70364335-70364354 None:intergenic 40.0%
!! AGAAGAAGCCATTTTCAGTG+AGG + chr1_3:70364501-70364520 Msa0137750:CDS 40.0%
GTGAGGACTAAAAGGGTAAA+AGG + chr1_3:70364518-70364537 Msa0137750:CDS 40.0%
GATATGGCGAGGTTAATAGT+AGG - chr1_3:70362750-70362769 None:intergenic 40.0%
TGAAGGATACTTCAACCTCT+TGG + chr1_3:70363061-70363080 Msa0137750:CDS 40.0%
ACTTCAACCTCTTGGTTGAA+AGG + chr1_3:70363069-70363088 Msa0137750:CDS 40.0%
AGAATGTCCTGATGAACTAG+AGG + chr1_3:70363216-70363235 Msa0137750:CDS 40.0%
AGCATCAGGAATACTGTTTG+CGG + chr1_3:70363243-70363262 Msa0137750:CDS 40.0%
AGCGAATTCTTTCCCAAATC+TGG - chr1_3:70363323-70363342 None:intergenic 40.0%
CAATTGCAGAGTTCATCCTA+AGG + chr1_3:70363366-70363385 Msa0137750:CDS 40.0%
GAGCTTAGAAAGCAGAATGA+AGG + chr1_3:70363697-70363716 Msa0137750:CDS 40.0%
! AAGAAACTTGTTCAAGCTGC+AGG - chr1_3:70363757-70363776 None:intergenic 40.0%
TGTAGTTCTCGCCAAAATCA+CGG - chr1_3:70363879-70363898 None:intergenic 40.0%
! CCTTGATCTCAGATTTTTGC+TGG - chr1_3:70364049-70364068 None:intergenic 40.0%
! CCAGCAAAAATCTGAGATCA+AGG + chr1_3:70364046-70364065 Msa0137750:CDS 40.0%
CATCATCAGGATCATGTGAT+TGG - chr1_3:70364241-70364260 None:intergenic 40.0%
GTCGAGGGCTTAAACTATTA+TGG - chr1_3:70364268-70364287 None:intergenic 40.0%
! TGTCCATCCAACACTTTTCT+CGG - chr1_3:70364290-70364309 None:intergenic 40.0%
TTGACTTCTTCTCCTTTCAG+CGG - chr1_3:70364335-70364354 None:intergenic 40.0%
!! AGAAGAAGCCATTTTCAGTG+AGG + chr1_3:70364501-70364520 Msa0137750:CDS 40.0%
GTGAGGACTAAAAGGGTAAA+AGG + chr1_3:70364518-70364537 Msa0137750:CDS 40.0%
! GTTGATTCTTGAGAACAGCG+AGG - chr1_3:70362776-70362795 None:intergenic 45.0%
TCCACCTCATTGCACAACAA+AGG + chr1_3:70363093-70363112 Msa0137750:CDS 45.0%
! ACCTTTGTTGTGCAATGAGG+TGG - chr1_3:70363097-70363116 None:intergenic 45.0%
! CACACCTTTGTTGTGCAATG+AGG - chr1_3:70363100-70363119 None:intergenic 45.0%
ATGTCCTGATGAACTAGAGG+AGG + chr1_3:70363219-70363238 Msa0137750:CDS 45.0%
GAATACTGTTTGCGGCATCA+AGG + chr1_3:70363251-70363270 Msa0137750:CDS 45.0%
GCAGGAACAAGTAACAAAGC+AGG + chr1_3:70364013-70364032 Msa0137750:intron 45.0%
AAAGCTATGTCACCGCTGAA+AGG + chr1_3:70364320-70364339 Msa0137750:CDS 45.0%
ATGGATGCAGAAATTGAGGG+TGG + chr1_3:70364425-70364444 Msa0137750:CDS 45.0%
CAGAAATTGAGGGTGGATCA+GGG + chr1_3:70364432-70364451 Msa0137750:CDS 45.0%
AGAAATTGAGGGTGGATCAG+GGG + chr1_3:70364433-70364452 Msa0137750:CDS 45.0%
! AAAAGGTGCACTTTGCGTCT+TGG - chr1_3:70364471-70364490 None:intergenic 45.0%
! GTTGATTCTTGAGAACAGCG+AGG - chr1_3:70362776-70362795 None:intergenic 45.0%
TCCACCTCATTGCACAACAA+AGG + chr1_3:70363093-70363112 Msa0137750:CDS 45.0%
! ACCTTTGTTGTGCAATGAGG+TGG - chr1_3:70363097-70363116 None:intergenic 45.0%
! CACACCTTTGTTGTGCAATG+AGG - chr1_3:70363100-70363119 None:intergenic 45.0%
ATGTCCTGATGAACTAGAGG+AGG + chr1_3:70363219-70363238 Msa0137750:CDS 45.0%
GAATACTGTTTGCGGCATCA+AGG + chr1_3:70363251-70363270 Msa0137750:CDS 45.0%
GCAGGAACAAGTAACAAAGC+AGG + chr1_3:70364013-70364032 Msa0137750:intron 45.0%
AAAGCTATGTCACCGCTGAA+AGG + chr1_3:70364320-70364339 Msa0137750:CDS 45.0%
ATGGATGCAGAAATTGAGGG+TGG + chr1_3:70364425-70364444 Msa0137750:CDS 45.0%
CAGAAATTGAGGGTGGATCA+GGG + chr1_3:70364432-70364451 Msa0137750:CDS 45.0%
AGAAATTGAGGGTGGATCAG+GGG + chr1_3:70364433-70364452 Msa0137750:CDS 45.0%
! AAAAGGTGCACTTTGCGTCT+TGG - chr1_3:70364471-70364490 None:intergenic 45.0%
!! GTTGATGGTTATCGGGGAGT+TGG - chr1_3:70362845-70362864 None:intergenic 50.0%
!! AGAGCGCGTTGATGGTTATC+GGG - chr1_3:70362852-70362871 None:intergenic 50.0%
!! GAGAGCGCGTTGATGGTTAT+CGG - chr1_3:70362853-70362872 None:intergenic 50.0%
GGTGGATCCTTTCAACCAAG+AGG - chr1_3:70363079-70363098 None:intergenic 50.0%
GCGCGAATCTCTTGAATCTC+TGG - chr1_3:70363289-70363308 None:intergenic 50.0%
! CTGCACGTGCTATTGAGTTG+AGG + chr1_3:70363341-70363360 Msa0137750:CDS 50.0%
AGTTCTCGCCAAAATCACGG+TGG - chr1_3:70363876-70363895 None:intergenic 50.0%
! CCAACACTTTTCTCGGTCGA+GGG - chr1_3:70364283-70364302 None:intergenic 50.0%
! TCCAACACTTTTCTCGGTCG+AGG - chr1_3:70364284-70364303 None:intergenic 50.0%
!! CGACCGAGAAAAGTGTTGGA+TGG + chr1_3:70364284-70364303 Msa0137750:CDS 50.0%
GCAGAAATTGAGGGTGGATC+AGG + chr1_3:70364431-70364450 Msa0137750:CDS 50.0%
!! GTTGATGGTTATCGGGGAGT+TGG - chr1_3:70362845-70362864 None:intergenic 50.0%
!! AGAGCGCGTTGATGGTTATC+GGG - chr1_3:70362852-70362871 None:intergenic 50.0%
!! GAGAGCGCGTTGATGGTTAT+CGG - chr1_3:70362853-70362872 None:intergenic 50.0%
GGTGGATCCTTTCAACCAAG+AGG - chr1_3:70363079-70363098 None:intergenic 50.0%
GCGCGAATCTCTTGAATCTC+TGG - chr1_3:70363289-70363308 None:intergenic 50.0%
! CTGCACGTGCTATTGAGTTG+AGG + chr1_3:70363341-70363360 Msa0137750:CDS 50.0%
AGTTCTCGCCAAAATCACGG+TGG - chr1_3:70363876-70363895 None:intergenic 50.0%
! CCAACACTTTTCTCGGTCGA+GGG - chr1_3:70364283-70364302 None:intergenic 50.0%
! TCCAACACTTTTCTCGGTCG+AGG - chr1_3:70364284-70364303 None:intergenic 50.0%
!! CGACCGAGAAAAGTGTTGGA+TGG + chr1_3:70364284-70364303 Msa0137750:CDS 50.0%
GCAGAAATTGAGGGTGGATC+AGG + chr1_3:70364431-70364450 Msa0137750:CDS 50.0%
!! GAGCGCGTTGATGGTTATCG+GGG - chr1_3:70362851-70362870 None:intergenic 55.0%
! GCTGCCTCCTCTAGTTCATC+AGG - chr1_3:70363226-70363245 None:intergenic 55.0%
GAACTAGAGGAGGCAGCATC+AGG + chr1_3:70363229-70363248 Msa0137750:CDS 55.0%
CTGTTTGCGGCATCAAGGTG+TGG + chr1_3:70363256-70363275 Msa0137750:CDS 55.0%
! AAGGTGCGCCACCGTGATTT+TGG + chr1_3:70363865-70363884 Msa0137750:intron 55.0%
GGATGTAGCTGATGCAGCAC+AGG + chr1_3:70364151-70364170 Msa0137750:CDS 55.0%
! CCCTCGACCGAGAAAAGTGT+TGG + chr1_3:70364280-70364299 Msa0137750:CDS 55.0%
GGGTGGATCAGGGGTTGTAT+TGG + chr1_3:70364442-70364461 Msa0137750:CDS 55.0%
!! GAGCGCGTTGATGGTTATCG+GGG - chr1_3:70362851-70362870 None:intergenic 55.0%
! GCTGCCTCCTCTAGTTCATC+AGG - chr1_3:70363226-70363245 None:intergenic 55.0%
GAACTAGAGGAGGCAGCATC+AGG + chr1_3:70363229-70363248 Msa0137750:CDS 55.0%
CTGTTTGCGGCATCAAGGTG+TGG + chr1_3:70363256-70363275 Msa0137750:CDS 55.0%
! AAGGTGCGCCACCGTGATTT+TGG + chr1_3:70363865-70363884 Msa0137750:intron 55.0%
GGATGTAGCTGATGCAGCAC+AGG + chr1_3:70364151-70364170 Msa0137750:CDS 55.0%
! CCCTCGACCGAGAAAAGTGT+TGG + chr1_3:70364280-70364299 Msa0137750:CDS 55.0%
GGGTGGATCAGGGGTTGTAT+TGG + chr1_3:70364442-70364461 Msa0137750:CDS 55.0%
GAGAACAGCGAGGCGCGATA+TGG - chr1_3:70362766-70362785 None:intergenic 60.0%
! CTCGAAGGAGAGCGCGTTGA+TGG - chr1_3:70362860-70362879 None:intergenic 60.0%
AGCTGCTGCTAGAGCAGCTG+TGG + chr1_3:70364202-70364221 Msa0137750:CDS 60.0%
GAGAACAGCGAGGCGCGATA+TGG - chr1_3:70362766-70362785 None:intergenic 60.0%
! CTCGAAGGAGAGCGCGTTGA+TGG - chr1_3:70362860-70362879 None:intergenic 60.0%
AGCTGCTGCTAGAGCAGCTG+TGG + chr1_3:70364202-70364221 Msa0137750:CDS 60.0%
CAGCGAGGCGCGATATGGCG+AGG - chr1_3:70362761-70362780 None:intergenic 70.0%
CAGCGAGGCGCGATATGGCG+AGG - chr1_3:70362761-70362780 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 70362611 70364682 70362611 ID=Msa0137750;Name=Msa0137750
chr1_3 mRNA 70362611 70364682 70362611 ID=Msa0137750-mRNA-1;Parent=Msa0137750;Name=Msa0137750-mRNA-1;_AED=0.01;_eAED=0.01;_QI=79|1|1|1|1|1|5|135|372
chr1_3 exon 70362611 70362878 70362611 ID=Msa0137750-mRNA-1:exon:24323;Parent=Msa0137750-mRNA-1
chr1_3 exon 70363011 70363114 70363011 ID=Msa0137750-mRNA-1:exon:24324;Parent=Msa0137750-mRNA-1
chr1_3 exon 70363216 70363387 70363216 ID=Msa0137750-mRNA-1:exon:24325;Parent=Msa0137750-mRNA-1
chr1_3 exon 70363668 70363790 70363668 ID=Msa0137750-mRNA-1:exon:24326;Parent=Msa0137750-mRNA-1
chr1_3 exon 70364017 70364682 70364017 ID=Msa0137750-mRNA-1:exon:24327;Parent=Msa0137750-mRNA-1
chr1_3 five_prime_UTR 70362611 70362689 70362611 ID=Msa0137750-mRNA-1:five_prime_utr;Parent=Msa0137750-mRNA-1
chr1_3 CDS 70362690 70362878 70362690 ID=Msa0137750-mRNA-1:cds;Parent=Msa0137750-mRNA-1
chr1_3 CDS 70363011 70363114 70363011 ID=Msa0137750-mRNA-1:cds;Parent=Msa0137750-mRNA-1
chr1_3 CDS 70363216 70363387 70363216 ID=Msa0137750-mRNA-1:cds;Parent=Msa0137750-mRNA-1
chr1_3 CDS 70363668 70363790 70363668 ID=Msa0137750-mRNA-1:cds;Parent=Msa0137750-mRNA-1
chr1_3 CDS 70364017 70364547 70364017 ID=Msa0137750-mRNA-1:cds;Parent=Msa0137750-mRNA-1
chr1_3 three_prime_UTR 70364548 70364682 70364548 ID=Msa0137750-mRNA-1:three_prime_utr;Parent=Msa0137750-mRNA-1
Gene Sequence

>Msa0137750

ATGGGTAAGAAACTTGATGCATTGTTGGGTAGAAACTTCAAAACTGACAAATTCAAGCCTACTATTAACCTCGCCATATCGCGCCTCGCTGTTCTCAAGAATCAACGTAACGCACGTCTCAGACAATCCCGTTCTGATGTTCTTCAACTTCTCCAACTCCCCGATAACCATCAACGCGCTCTCCTTCGAGTTGAACATGTAATCAAGGAGCAGAATATGTTGGATGTGTACGATGAAATTGAAGGATACTTCAACCTCTTGGTTGAAAGGATCCACCTCATTGCACAACAAAGAGAATGTCCTGATGAACTAGAGGAGGCAGCATCAGGAATACTGTTTGCGGCATCAAGGTGTGGAGATTTTCCAGAGATTCAAGAGATTCGCGCAATTCTTACTTCCAGATTTGGGAAAGAATTCGCTGCACGTGCTATTGAGTTGAGGAACAATTGCAGAGTTCATCCTAAGATAATCACAAAGCTTTCTACGAGGATGCCGAGCTTAGAAAGCAGAATGAAGGTACTCAGAGAAATTGCTTCTGAGAACAATATTATCCTGCAGCTTGAACAAGTTTCTTCAACTATAGATGAGGAACAAGTAACAAAGCAGGAAAAGCAAAACCAGCAAAAATCTGAGATCAAGGAAGAAGAAAAAGTCCACATTTTAGTTAATGAAGGAAAAAGTGATGAATTTTCTGATTCCTTTAAGGGTAGGAAAAAGTATAAGGATGTAGCTGATGCAGCACAGGCAGCTTTTGAATCAGCTGCATATGCTGCAGCTGCTGCTAGAGCAGCTGTGGAACTATCAAGATTCCAATCACATGATCCTGATGATGATGACCATAATAGTTTAAGCCCTCGACCGAGAAAAGTGTTGGATGGACATGATTCTGTGAAAGCTATGTCACCGCTGAAAGGAGAAGAAGTCAATAAGAATGTTGAAGAGTTAGAGAAGGTAATTAGTAGTTCAAATTCAGGTGCTGATGAGATTGTTGATTCAATGGATGCAGAAATTGAGGGTGGATCAGGGGTTGTATTGGAATCCAAGACGCAAAGTGCACCTTTTATTGATTTGGAGAAGAAGCCATTTTCAGTGAGGACTAAAAGGGTAAAAGGTTATTGA

Protein sequence

>Msa0137750

MGKKLDALLGRNFKTDKFKPTINLAISRLAVLKNQRNARLRQSRSDVLQLLQLPDNHQRALLRVEHVIKEQNMLDVYDEIEGYFNLLVERIHLIAQQRECPDELEEAASGILFAASRCGDFPEIQEIRAILTSRFGKEFAARAIELRNNCRVHPKIITKLSTRMPSLESRMKVLREIASENNIILQLEQVSSTIDEEQVTKQEKQNQQKSEIKEEEKVHILVNEGKSDEFSDSFKGRKKYKDVADAAQAAFESAAYAAAAARAAVELSRFQSHDPDDDDHNSLSPRPRKVLDGHDSVKAMSPLKGEEVNKNVEELEKVISSSNSGADEIVDSMDAEIEGGSGVVLESKTQSAPFIDLEKKPFSVRTKRVKGY*