AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1393570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1393570 MtrunA17_Chr8g0388461 93.143 175 6 1 1 175 1 169 9.58e-97 277
Msa1393570 MtrunA17_Chr7g0275791 48.864 176 83 3 3 175 2 173 4.83e-44 149
Msa1393570 MtrunA17_Chr3g0130571 37.500 112 68 2 60 171 31 140 1.87e-19 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1393570 AT4G10920.2 51.852 162 69 3 14 175 13 165 3.24e-49 157
Msa1393570 AT4G10920.1 51.852 162 69 3 14 175 13 165 3.24e-49 157
Msa1393570 AT5G09250.1 44.928 69 38 0 101 169 36 104 1.55e-19 79.3
Msa1393570 AT5G09250.3 46.032 63 34 0 106 168 44 106 3.50e-16 70.9
Msa1393570 AT5G09250.4 32.632 95 59 1 61 155 1 90 3.01e-15 68.6
Msa1393570 AT4G00980.1 31.138 167 98 3 9 175 19 168 1.09e-14 71.2
Msa1393570 AT5G09240.1 42.424 66 36 1 105 168 39 104 4.10e-13 62.8
Msa1393570 AT5G09250.2 47.826 46 24 0 101 146 36 81 3.09e-12 60.1
Msa1393570 AT5G09250.5 47.826 46 24 0 101 146 36 81 3.09e-12 60.1

Find 50 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTGAGCTCACTGGTTCTTT+TGG 0.249585 tig0021743:-69853 None:intergenic
AGAACAAGCCATTCAGAAAA+AGG 0.298415 tig0021743:+72719 Msa1393570:CDS
TTCGATTCTTCCTTTGGTTT+CGG 0.299411 tig0021743:-69896 None:intergenic
TGAGGCTTGCTTTCGAATCT+TGG 0.308290 tig0021743:-69971 None:intergenic
TGTTTCTTCGATTCTTCCTT+TGG 0.317008 tig0021743:-69902 None:intergenic
TAATCATACAAATTTCTTAT+CGG 0.321341 tig0021743:-73091 None:intergenic
ACAAAATGACACTAAGATTC+AGG 0.341487 tig0021743:-72888 None:intergenic
CGTCCATGTTTGATTCTTGA+AGG 0.351225 tig0021743:-69936 None:intergenic
AAAGAGAAAGGTGACAATTC+AGG 0.366183 tig0021743:+70341 Msa1393570:CDS
CATCACAGAGAATTAATATA+TGG 0.371485 tig0021743:-73050 None:intergenic
AAAGCAAGCCTCAAATGAAT+TGG 0.387647 tig0021743:+69981 Msa1393570:CDS
AGCACTGTTTATGATGATTC+CGG 0.391789 tig0021743:+70174 Msa1393570:CDS
CTTGGTATAAAACTCTCTAA+TGG 0.394017 tig0021743:-70388 None:intergenic
AAAGAACTTCCTTCTTCTAA+AGG 0.401625 tig0021743:+70417 Msa1393570:CDS
TGAATGGCTTGTTCTATGTC+AGG 0.401909 tig0021743:-72711 None:intergenic
TTGCTTTCGAATCTTGGATT+CGG 0.412374 tig0021743:-69965 None:intergenic
AGGAAGTTCTTTGCCATCCT+TGG 0.414306 tig0021743:-70406 None:intergenic
CTTTGAAGGGAGGCTGAGAT+AGG 0.417924 tig0021743:-70011 None:intergenic
ATTTCAAGTCCTGAACAAAA+TGG 0.421684 tig0021743:-72918 None:intergenic
TTGCTTGACGAAGGCTTTGA+AGG 0.429051 tig0021743:-70025 None:intergenic
TGAATACTTCAACCTGCATA+TGG 0.452162 tig0021743:-72770 None:intergenic
AGAAGAAGAAGAGAAACAAC+AGG 0.454315 tig0021743:+70125 Msa1393570:CDS
TTCTCTGTGATGGTTGTGTT+CGG 0.468735 tig0021743:+73061 Msa1393570:three_prime_UTR
ACAACTTTACCTTTAGAAGA+AGG 0.476393 tig0021743:-70426 None:intergenic
TTTGTTCAGTGTAGTGCAGC+TGG 0.477037 tig0021743:+72956 Msa1393570:three_prime_UTR
GCAGCAAGAACAACAGAAAG+AGG 0.479297 tig0021743:+70074 Msa1393570:CDS
GTTAAGATCCAATTCATTTG+AGG 0.479566 tig0021743:-69989 None:intergenic
CATATATTAATTCTCTGTGA+TGG 0.488772 tig0021743:+73051 Msa1393570:three_prime_UTR
GTGACAATTCAGGATTTCAA+AGG 0.497487 tig0021743:+70351 Msa1393570:CDS
GCAGCTGGAGTAGAATTTGT+AGG 0.500031 tig0021743:+72971 Msa1393570:three_prime_UTR
TGACAATTCAGGATTTCAAA+GGG 0.528976 tig0021743:+70352 Msa1393570:CDS
TTCAGGAATAAGTTTGACTC+AGG 0.531614 tig0021743:+72659 Msa1393570:intron
TCAAGTATCACCACATCACT+TGG 0.535742 tig0021743:-72815 None:intergenic
TTCGATGATTTGCTTGACGA+AGG 0.545920 tig0021743:-70034 None:intergenic
TTTGACACAGCTGAGCTCAC+TGG 0.548836 tig0021743:-69862 None:intergenic
TGCTTGACGAAGGCTTTGAA+GGG 0.552385 tig0021743:-70024 None:intergenic
ACGAGATGACTTCCATATGC+AGG 0.564861 tig0021743:+72758 Msa1393570:three_prime_UTR
GAAACAACAGGTTAAACAAG+AGG 0.566821 tig0021743:+70137 Msa1393570:CDS
TTGACGAAGGCTTTGAAGGG+AGG 0.568942 tig0021743:-70021 None:intergenic
ACAGAGAATTAATATATGGA+AGG 0.591935 tig0021743:-73046 None:intergenic
ATGGATGACGCCGAAACCAA+AGG 0.594413 tig0021743:+69886 Msa1393570:CDS
CTCGCAGATGACTAGATCAC+CGG 0.601997 tig0021743:-70193 None:intergenic
TAAGTTTGACTCAGGAGCAG+TGG 0.602755 tig0021743:+72667 Msa1393570:CDS
AAACAACAGGTTAAACAAGA+GGG 0.617440 tig0021743:+70138 Msa1393570:CDS
AGTCCTGAACAAAATGGTCG+AGG 0.628397 tig0021743:-72912 None:intergenic
TTGTAGGAAAACTCTAGAGG+AGG 0.645810 tig0021743:+72987 Msa1393570:three_prime_UTR
ATTATGATTGCCAAGTGATG+TGG 0.653954 tig0021743:+72805 Msa1393570:three_prime_UTR
GATCCTTCAAGAATCAAACA+TGG 0.657064 tig0021743:+69933 Msa1393570:CDS
AATTTGTAGGAAAACTCTAG+AGG 0.680085 tig0021743:+72984 Msa1393570:three_prime_UTR
CGGTGATCTAGTCATCTGCG+AGG 0.722262 tig0021743:+70194 Msa1393570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCATACAAAAAAAAATA+TGG - tig0021743:71295-71314 None:intergenic 10.0%
!! ATAAAATTTGAAAATGATAA+AGG + tig0021743:71383-71402 Msa1393570:intron 10.0%
!!! TTTTTTTTTTTACTTTTCAT+TGG + tig0021743:72000-72019 Msa1393570:intron 10.0%
!! AAAGAAAATTGTTAAAAAAG+CGG - tig0021743:69819-69838 None:intergenic 15.0%
!! GTCATATTATATAAAAGAAA+TGG - tig0021743:70825-70844 None:intergenic 15.0%
!!! AAACACCTTTTATTATAAAT+TGG + tig0021743:71352-71371 Msa1393570:intron 15.0%
!! TTCTACCAATTTATAATAAA+AGG - tig0021743:71360-71379 None:intergenic 15.0%
!!! AAGTATATCTACTTTTAATA+TGG + tig0021743:71639-71658 Msa1393570:intron 15.0%
!! AATGTTTCTTAGATATTAAA+TGG - tig0021743:71848-71867 None:intergenic 15.0%
!! TTTAATATCTAAGAAACATT+AGG + tig0021743:71848-71867 Msa1393570:intron 15.0%
!! TTAATATCTAAGAAACATTA+GGG + tig0021743:71849-71868 Msa1393570:intron 15.0%
!! TCATATATAATTTAGCAAAT+AGG + tig0021743:72281-72300 Msa1393570:intron 15.0%
!! TAATCATACAAATTTCTTAT+CGG - tig0021743:73094-73113 None:intergenic 15.0%
!! AGACTAATTGATAGAAATTA+TGG - tig0021743:70488-70507 None:intergenic 20.0%
!!! GCTAATTAGCTTAAATTTAA+CGG - tig0021743:70554-70573 None:intergenic 20.0%
!! TGTGCAAGTTAATAATAATT+TGG - tig0021743:70692-70711 None:intergenic 20.0%
!!! ATAATATGACATTGATTTTC+AGG + tig0021743:70835-70854 Msa1393570:intron 20.0%
!! AAAGAAAAAAAACATGAGTA+TGG + tig0021743:71530-71549 Msa1393570:intron 20.0%
!!! ATCTACTTTTAATATGGTAT+TGG + tig0021743:71645-71664 Msa1393570:intron 20.0%
!! AATTTATACAGTTTGAACTT+TGG + tig0021743:71770-71789 Msa1393570:intron 20.0%
!!! TAAGTTCTAACTAGTAAAAT+TGG - tig0021743:72055-72074 None:intergenic 20.0%
!!! ATTTTAATGCCAAACTTAAA+AGG - tig0021743:72129-72148 None:intergenic 20.0%
!! CTTAATTTAGTACTAAATTC+TGG + tig0021743:72166-72185 Msa1393570:intron 20.0%
!!! GTTTTATCTATAACTTTTCA+CGG - tig0021743:72426-72445 None:intergenic 20.0%
!! ATTTCGATTCAAATGTTTAT+TGG + tig0021743:72457-72476 Msa1393570:intron 20.0%
!! GAAACACAAATATTAGAATT+TGG - tig0021743:72642-72661 None:intergenic 20.0%
!! AATTCTAATATTTGTGTTTC+AGG + tig0021743:72642-72661 Msa1393570:intron 20.0%
! GAGAGTAAAAAATTACGAAA+CGG - tig0021743:70221-70240 None:intergenic 25.0%
! TTAACGATGAAATCAATTCA+TGG + tig0021743:70261-70280 Msa1393570:intron 25.0%
! TGAAATCAATTCATGGAAAA+AGG + tig0021743:70268-70287 Msa1393570:intron 25.0%
! GAAATCAATTCATGGAAAAA+GGG + tig0021743:70269-70288 Msa1393570:intron 25.0%
! CCAAAATAATAATGTTAACC+AGG - tig0021743:70300-70319 None:intergenic 25.0%
!! CCTGGTTAACATTATTATTT+TGG + tig0021743:70297-70316 Msa1393570:intron 25.0%
! AGATTTCATCTTTCATTCTA+AGG - tig0021743:70669-70688 None:intergenic 25.0%
! ATTTCTTGACAATAGAACTT+AGG - tig0021743:70724-70743 None:intergenic 25.0%
! TTGTCAAGAAATATCAAGAT+TGG + tig0021743:70732-70751 Msa1393570:intron 25.0%
!! ATTGGATTAGAAACAGTTAA+AGG + tig0021743:70750-70769 Msa1393570:intron 25.0%
! AATGCAGTTTCGAATAAATA+GGG - tig0021743:71025-71044 None:intergenic 25.0%
! TCTTAATTAATACTCGATGT+GGG + tig0021743:71135-71154 Msa1393570:intron 25.0%
!! GCTTATATGAACCTTTAAAA+AGG - tig0021743:71226-71245 None:intergenic 25.0%
! ATTTGAAAATGATAAAGGCA+TGG + tig0021743:71388-71407 Msa1393570:intron 25.0%
!! AGTAGATATACTTGTGATTT+TGG - tig0021743:71632-71651 None:intergenic 25.0%
! ATTAGGGTTCAAAATAAGTT+GGG + tig0021743:71865-71884 Msa1393570:intron 25.0%
! TGAACAGAGTTAAGTAATAT+TGG - tig0021743:71901-71920 None:intergenic 25.0%
! ACTACTCATACTATCATATA+GGG - tig0021743:72210-72229 None:intergenic 25.0%
! TACTACTCATACTATCATAT+AGG - tig0021743:72211-72230 None:intergenic 25.0%
! CATGATAAAAATTATTCCAC+CGG + tig0021743:72383-72402 Msa1393570:intron 25.0%
!! ACGTAACTATGTGTTTTATA+AGG - tig0021743:72599-72618 None:intergenic 25.0%
! ATAGTTACGTTCTATAATTG+AGG + tig0021743:72609-72628 Msa1393570:intron 25.0%
! TAGTTACGTTCTATAATTGA+GGG + tig0021743:72610-72629 Msa1393570:intron 25.0%
! ACAGAGAATTAATATATGGA+AGG - tig0021743:73049-73068 None:intergenic 25.0%
! CATCACAGAGAATTAATATA+TGG - tig0021743:73053-73072 None:intergenic 25.0%
! CATATATTAATTCTCTGTGA+TGG + tig0021743:73051-73070 Msa1393570:three_prime_UTR 25.0%
GTTAAGATCCAATTCATTTG+AGG - tig0021743:69992-70011 None:intergenic 30.0%
AAACAACAGGTTAAACAAGA+GGG + tig0021743:70138-70157 Msa1393570:CDS 30.0%
! ATCATAAACAGTGCTTTTGT+TGG - tig0021743:70169-70188 None:intergenic 30.0%
! GAATTGATTTCATCGTTAAC+CGG - tig0021743:70260-70279 None:intergenic 30.0%
TGACAATTCAGGATTTCAAA+GGG + tig0021743:70352-70371 Msa1393570:CDS 30.0%
CTTGGTATAAAACTCTCTAA+TGG - tig0021743:70391-70410 None:intergenic 30.0%
!! CATTAGAGAGTTTTATACCA+AGG + tig0021743:70389-70408 Msa1393570:CDS 30.0%
AAAGAACTTCCTTCTTCTAA+AGG + tig0021743:70417-70436 Msa1393570:CDS 30.0%
! ACAACTTTACCTTTAGAAGA+AGG - tig0021743:70429-70448 None:intergenic 30.0%
GGAAACATCTTATGAACTTA+TGG - tig0021743:70467-70486 None:intergenic 30.0%
AAGCTAATTAGCAAAAAGCA+AGG + tig0021743:70562-70581 Msa1393570:intron 30.0%
AGAACAATAGAGAGAAGAAA+GGG + tig0021743:70946-70965 Msa1393570:intron 30.0%
GAATGCAGTTTCGAATAAAT+AGG - tig0021743:71026-71045 None:intergenic 30.0%
TTATTCGAAACTGCATTCTA+AGG + tig0021743:71028-71047 Msa1393570:intron 30.0%
TCTTAAAAGCTAGCTATCAA+GGG + tig0021743:71098-71117 Msa1393570:intron 30.0%
CACATCGAGTATTAATTAAG+AGG - tig0021743:71136-71155 None:intergenic 30.0%
CTCTTAATTAATACTCGATG+TGG + tig0021743:71134-71153 Msa1393570:intron 30.0%
! TGAACCTTTAAAAAGGAACA+CGG - tig0021743:71219-71238 None:intergenic 30.0%
TCAGATTTGTCATTGTTGAT+AGG - tig0021743:71268-71287 None:intergenic 30.0%
! AAAATGATAAAGGCATGGAA+TGG + tig0021743:71393-71412 Msa1393570:intron 30.0%
AAGTTCTTGAGTCTCTAATT+TGG - tig0021743:71446-71465 None:intergenic 30.0%
GACACGATGATCTATATATT+TGG + tig0021743:71471-71490 Msa1393570:intron 30.0%
ATAACATGACTACATGAGTA+TGG + tig0021743:71497-71516 Msa1393570:intron 30.0%
!!! TTTTAATATGGTATTGGCCT+TGG + tig0021743:71651-71670 Msa1393570:intron 30.0%
TATTAAATGGAGCACAACAA+GGG - tig0021743:71835-71854 None:intergenic 30.0%
ATATTAAATGGAGCACAACA+AGG - tig0021743:71836-71855 None:intergenic 30.0%
CATTAGGGTTCAAAATAAGT+TGG + tig0021743:71864-71883 Msa1393570:intron 30.0%
TTAGGGTTCAAAATAAGTTG+GGG + tig0021743:71866-71885 Msa1393570:intron 30.0%
GTTAAGTAATATTGGCAACA+AGG - tig0021743:71893-71912 None:intergenic 30.0%
TAGTTAGAACTTAGATGTCT+CGG + tig0021743:72062-72081 Msa1393570:intron 30.0%
TTAAAAGGAAGTTCTCAACT+GGG - tig0021743:72114-72133 None:intergenic 30.0%
!!! TGAGAACTTCCTTTTAAGTT+TGG + tig0021743:72117-72136 Msa1393570:intron 30.0%
CTACTCATACTATCATATAG+GGG - tig0021743:72209-72228 None:intergenic 30.0%
ACCAAGAAATTCAGAAAAGA+TGG + tig0021743:72311-72330 Msa1393570:intron 30.0%
! ACCATCTTTTCTGAATTTCT+TGG - tig0021743:72315-72334 None:intergenic 30.0%
!!! AAGATGGTTAGTGTTGTTTT+AGG + tig0021743:72327-72346 Msa1393570:intron 30.0%
ATAAAAATTATTCCACCGGT+TGG + tig0021743:72387-72406 Msa1393570:intron 30.0%
TGAATCGAAATCTCTGTTAA+TGG - tig0021743:72448-72467 None:intergenic 30.0%
ACAAAATGACACTAAGATTC+AGG - tig0021743:72891-72910 None:intergenic 30.0%
! ATTTCAAGTCCTGAACAAAA+TGG - tig0021743:72921-72940 None:intergenic 30.0%
AATTTGTAGGAAAACTCTAG+AGG + tig0021743:72984-73003 Msa1393570:three_prime_UTR 30.0%
! TTCGATTCTTCCTTTGGTTT+CGG - tig0021743:69899-69918 None:intergenic 35.0%
TGTTTCTTCGATTCTTCCTT+TGG - tig0021743:69905-69924 None:intergenic 35.0%
GATCCTTCAAGAATCAAACA+TGG + tig0021743:69933-69952 Msa1393570:CDS 35.0%
TTGCTTTCGAATCTTGGATT+CGG - tig0021743:69968-69987 None:intergenic 35.0%
AAAGCAAGCCTCAAATGAAT+TGG + tig0021743:69981-70000 Msa1393570:CDS 35.0%
CAGAAAGAGGAAAAAGAAGA+AGG + tig0021743:70087-70106 Msa1393570:CDS 35.0%
AGAAGAAGAAGAGAAACAAC+AGG + tig0021743:70125-70144 Msa1393570:CDS 35.0%
GAAACAACAGGTTAAACAAG+AGG + tig0021743:70137-70156 Msa1393570:CDS 35.0%
AGCACTGTTTATGATGATTC+CGG + tig0021743:70174-70193 Msa1393570:CDS 35.0%
!!! TTTGGTTTTGCATTTCAGCT+TGG + tig0021743:70315-70334 Msa1393570:intron 35.0%
TCAGCTTGGAAAAAAGAGAA+AGG + tig0021743:70329-70348 Msa1393570:intron 35.0%
AAAGAGAAAGGTGACAATTC+AGG + tig0021743:70341-70360 Msa1393570:CDS 35.0%
GTGACAATTCAGGATTTCAA+AGG + tig0021743:70351-70370 Msa1393570:CDS 35.0%
!! AGAGAGTTTTATACCAAGGA+TGG + tig0021743:70393-70412 Msa1393570:CDS 35.0%
AATTTAACGGCCAAGGATAA+GGG - tig0021743:70541-70560 None:intergenic 35.0%
AAATTTAACGGCCAAGGATA+AGG - tig0021743:70542-70561 None:intergenic 35.0%
TAGCTTAAATTTAACGGCCA+AGG - tig0021743:70548-70567 None:intergenic 35.0%
ATTAGCAAAAAGCAAGGCAA+CGG + tig0021743:70568-70587 Msa1393570:intron 35.0%
GAGAACAATAGAGAGAAGAA+AGG + tig0021743:70945-70964 Msa1393570:intron 35.0%
TGGAATGTGACAGTTTACAT+TGG + tig0021743:70976-70995 Msa1393570:intron 35.0%
AAATAGGGAAGCTATGCAAT+TGG - tig0021743:71010-71029 None:intergenic 35.0%
! CTGGCTTATTTCTCACAATA+GGG + tig0021743:71068-71087 Msa1393570:intron 35.0%
CTCTTAAAAGCTAGCTATCA+AGG + tig0021743:71097-71116 Msa1393570:intron 35.0%
CTTAAAAGCTAGCTATCAAG+GGG + tig0021743:71099-71118 Msa1393570:intron 35.0%
TCGGATTAAGGATGTTGATA+GGG - tig0021743:71182-71201 None:intergenic 35.0%
TTCGGATTAAGGATGTTGAT+AGG - tig0021743:71183-71202 None:intergenic 35.0%
!! TGTAGAAGCATTTCGGATTA+AGG - tig0021743:71194-71213 None:intergenic 35.0%
! CAAACCGTGTTCCTTTTTAA+AGG + tig0021743:71212-71231 Msa1393570:intron 35.0%
! TGGCCTTGGTTATATACTAT+AGG + tig0021743:71665-71684 Msa1393570:intron 35.0%
CCACCTATAGTATATAACCA+AGG - tig0021743:71671-71690 None:intergenic 35.0%
CCTTGGTTATATACTATAGG+TGG + tig0021743:71668-71687 Msa1393570:intron 35.0%
TCTCACTTTAGCATTTCTCA+TGG + tig0021743:71720-71739 Msa1393570:intron 35.0%
TAGCATTTCTCATGGATGTT+TGG + tig0021743:71728-71747 Msa1393570:intron 35.0%
! TAGGGTTCAAAATAAGTTGG+GGG + tig0021743:71867-71886 Msa1393570:intron 35.0%
GAGCTTTCATGATTCATGTA+AGG - tig0021743:71943-71962 None:intergenic 35.0%
CTTAAAAGGAAGTTCTCAAC+TGG - tig0021743:72115-72134 None:intergenic 35.0%
CATACTATCATATAGGGGAA+GGG - tig0021743:72204-72223 None:intergenic 35.0%
TCATACTATCATATAGGGGA+AGG - tig0021743:72205-72224 None:intergenic 35.0%
!!! ATGGTTAGTGTTGTTTTAGG+TGG + tig0021743:72330-72349 Msa1393570:intron 35.0%
TTCAGGAATAAGTTTGACTC+AGG + tig0021743:72659-72678 Msa1393570:intron 35.0%
AGAACAAGCCATTCAGAAAA+AGG + tig0021743:72719-72738 Msa1393570:CDS 35.0%
AAAAAGGAGTCACGTGTATA+AGG + tig0021743:72735-72754 Msa1393570:CDS 35.0%
TGAATACTTCAACCTGCATA+TGG - tig0021743:72773-72792 None:intergenic 35.0%
ATTATGATTGCCAAGTGATG+TGG + tig0021743:72805-72824 Msa1393570:three_prime_UTR 35.0%
!! ACTGGTTCTTTTGGAGAAAG+GGG - tig0021743:69847-69866 None:intergenic 40.0%
!!! CACTGGTTCTTTTGGAGAAA+GGG - tig0021743:69848-69867 None:intergenic 40.0%
!!! TCACTGGTTCTTTTGGAGAA+AGG - tig0021743:69849-69868 None:intergenic 40.0%
CGTCCATGTTTGATTCTTGA+AGG - tig0021743:69939-69958 None:intergenic 40.0%
!! TTCGATGATTTGCTTGACGA+AGG - tig0021743:70037-70056 None:intergenic 40.0%
CATGGAAAAAGGGTTATTCC+TGG + tig0021743:70279-70298 Msa1393570:intron 40.0%
TCCAAACAAACCCTTATCCT+TGG + tig0021743:70528-70547 Msa1393570:intron 40.0%
!! GATTTTCAGGAGACATCTGA+TGG + tig0021743:70848-70867 Msa1393570:intron 40.0%
AGAGAAGAAAGGGATTTGAG+TGG + tig0021743:70956-70975 Msa1393570:intron 40.0%
! GCTGGCTTATTTCTCACAAT+AGG + tig0021743:71067-71086 Msa1393570:intron 40.0%
! TTAAGGATGTTGATAGGGAC+CGG - tig0021743:71177-71196 None:intergenic 40.0%
!! CACGGTTTGTAGAAGCATTT+CGG - tig0021743:71201-71220 None:intergenic 40.0%
GTAGTTATCGTTTCTGTCTG+AGG + tig0021743:71579-71598 Msa1393570:intron 40.0%
GCCAAATTGATCTGCTTTGT+TGG + tig0021743:72249-72268 Msa1393570:intron 40.0%
GCCAACAAAGCAGATCAATT+TGG - tig0021743:72253-72272 None:intergenic 40.0%
! GTCAGGCACAATTTTCTTGA+AGG - tig0021743:72697-72716 None:intergenic 40.0%
!! TGAATGGCTTGTTCTATGTC+AGG - tig0021743:72714-72733 None:intergenic 40.0%
! ACGTGACTCCTTTTTCTGAA+TGG - tig0021743:72730-72749 None:intergenic 40.0%
TCAAGTATCACCACATCACT+TGG - tig0021743:72818-72837 None:intergenic 40.0%
! TTGTAGGAAAACTCTAGAGG+AGG + tig0021743:72987-73006 Msa1393570:three_prime_UTR 40.0%
TTCTCTGTGATGGTTGTGTT+CGG + tig0021743:73061-73080 Msa1393570:three_prime_UTR 40.0%
GAGCTCAGCTGTGTCAAAAA+TGG + tig0021743:69867-69886 Msa1393570:exon 45.0%
! TGAGGCTTGCTTTCGAATCT+TGG - tig0021743:69974-69993 None:intergenic 45.0%
!! TGCTTGACGAAGGCTTTGAA+GGG - tig0021743:70027-70046 None:intergenic 45.0%
! TTGCTTGACGAAGGCTTTGA+AGG - tig0021743:70028-70047 None:intergenic 45.0%
GCAGCAAGAACAACAGAAAG+AGG + tig0021743:70074-70093 Msa1393570:CDS 45.0%
AGGAAGTTCTTTGCCATCCT+TGG - tig0021743:70409-70428 None:intergenic 45.0%
! GCCAAGGATAAGGGTTTGTT+TGG - tig0021743:70532-70551 None:intergenic 45.0%
AGGAGACATCTGATGGAAAC+TGG + tig0021743:70855-70874 Msa1393570:intron 45.0%
GCTATCAAGGGGTAAGAAAC+AGG + tig0021743:71110-71129 Msa1393570:intron 45.0%
TTGATAGGGACCGGTATTGT+GGG - tig0021743:71168-71187 None:intergenic 45.0%
GCTCAAGAGTCATGAGAAGA+AGG + tig0021743:71316-71335 Msa1393570:intron 45.0%
! TTATTCCACCGGTTGGAGTT+AGG + tig0021743:72394-72413 Msa1393570:intron 45.0%
ATACAACCAACTCCGTGTAG+TGG + tig0021743:72531-72550 Msa1393570:intron 45.0%
TACAACCAACTCCGTGTAGT+GGG + tig0021743:72532-72551 Msa1393570:intron 45.0%
CTAAGCTTTCTCCCACTACA+CGG - tig0021743:72546-72565 None:intergenic 45.0%
TAAGTTTGACTCAGGAGCAG+TGG + tig0021743:72667-72686 Msa1393570:CDS 45.0%
ACGAGATGACTTCCATATGC+AGG + tig0021743:72758-72777 Msa1393570:three_prime_UTR 45.0%
! GTACCTCGACCATTTTGTTC+AGG + tig0021743:72909-72928 Msa1393570:three_prime_UTR 45.0%
AGTCCTGAACAAAATGGTCG+AGG - tig0021743:72915-72934 None:intergenic 45.0%
TTTGTTCAGTGTAGTGCAGC+TGG + tig0021743:72956-72975 Msa1393570:three_prime_UTR 45.0%
GCAGCTGGAGTAGAATTTGT+AGG + tig0021743:72971-72990 Msa1393570:three_prime_UTR 45.0%
!!! GCTGAGCTCACTGGTTCTTT+TGG - tig0021743:69856-69875 None:intergenic 50.0%
TTTGACACAGCTGAGCTCAC+TGG - tig0021743:69865-69884 None:intergenic 50.0%
ATGGATGACGCCGAAACCAA+AGG + tig0021743:69886-69905 Msa1393570:CDS 50.0%
! CTTTGAAGGGAGGCTGAGAT+AGG - tig0021743:70014-70033 None:intergenic 50.0%
!! TTGACGAAGGCTTTGAAGGG+AGG - tig0021743:70024-70043 None:intergenic 50.0%
CTCGCAGATGACTAGATCAC+CGG - tig0021743:70196-70215 None:intergenic 50.0%
GGGAAGCTATGCAATTGGCA+GGG - tig0021743:71005-71024 None:intergenic 50.0%
AGGGAAGCTATGCAATTGGC+AGG - tig0021743:71006-71025 None:intergenic 50.0%
GGCACAACTATGACACAAGC+TGG + tig0021743:71049-71068 Msa1393570:intron 50.0%
TGATAGGGACCGGTATTGTG+GGG - tig0021743:71167-71186 None:intergenic 50.0%
! GTTGATAGGGACCGGTATTG+TGG - tig0021743:71169-71188 None:intergenic 50.0%
AGATGTCTCGGCGTTGCAAT+TGG + tig0021743:72074-72093 Msa1393570:intron 50.0%
TAGGTGGTCTGTGCATACAG+CGG + tig0021743:72346-72365 Msa1393570:intron 50.0%
GGTATCCACCTAACTCCAAC+CGG - tig0021743:72405-72424 None:intergenic 50.0%
TTTCTCCCACTACACGGAGT+TGG - tig0021743:72540-72559 None:intergenic 50.0%
CGGTGATCTAGTCATCTGCG+AGG + tig0021743:70194-70213 Msa1393570:CDS 55.0%
CTCTTTCGCACGCACTTCAC+CGG + tig0021743:70238-70257 Msa1393570:intron 55.0%
GGGACTTGACCCCACAATAC+CGG + tig0021743:71155-71174 Msa1393570:intron 55.0%
! TTCCACCGGTTGGAGTTAGG+TGG + tig0021743:72397-72416 Msa1393570:intron 55.0%
ATCCACCTAACTCCAACCGG+TGG - tig0021743:72402-72421 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
tig0021743 gene 69805 73150 69805 ID=Msa1393570;Name=Msa1393570
tig0021743 mRNA 69805 73150 69805 ID=Msa1393570-mRNA-1;Parent=Msa1393570;Name=Msa1393570-mRNA-1;_AED=0.06;_eAED=0.06;_QI=81|1|1|1|1|1|3|395|175
tig0021743 exon 69805 70215 69805 ID=Msa1393570-mRNA-1:exon:13859;Parent=Msa1393570-mRNA-1
tig0021743 exon 70333 70438 70333 ID=Msa1393570-mRNA-1:exon:13860;Parent=Msa1393570-mRNA-1
tig0021743 exon 72664 73150 72664 ID=Msa1393570-mRNA-1:exon:13861;Parent=Msa1393570-mRNA-1
tig0021743 five_prime_UTR 69805 69885 69805 ID=Msa1393570-mRNA-1:five_prime_utr;Parent=Msa1393570-mRNA-1
tig0021743 CDS 69886 70215 69886 ID=Msa1393570-mRNA-1:cds;Parent=Msa1393570-mRNA-1
tig0021743 CDS 70333 70438 70333 ID=Msa1393570-mRNA-1:cds;Parent=Msa1393570-mRNA-1
tig0021743 CDS 72664 72755 72664 ID=Msa1393570-mRNA-1:cds;Parent=Msa1393570-mRNA-1
tig0021743 three_prime_UTR 72756 73150 72756 ID=Msa1393570-mRNA-1:three_prime_utr;Parent=Msa1393570-mRNA-1
Gene Sequence

>Msa1393570

ATGGATGACGCCGAAACCAAAGGAAGAATCGAAGAAACAGTTTTGAAGATCCTTCAAGAATCAAACATGGACGACGTCACCGAATCCAAGATTCGAAAGCAAGCCTCAAATGAATTGGATCTTAACCTATCTCAGCCTCCCTTCAAAGCCTTCGTCAAGCAAATCATCGAAGCTTTTCTTATACAGAAGCAGCAAGAACAACAGAAAGAGGAAAAAGAAGAAGGCGAAGAAGAAGAAGAAGAAGAAGAAGAGAAACAACAGGTTAAACAAGAGGGAGCTTCCAACAAAAGCACTGTTTATGATGATTCCGGTGATCTAGTCATCTGCGAGCTTGGAAAAAAGAGAAAGGTGACAATTCAGGATTTCAAAGGGAGAACATTTGTCTCCATTAGAGAGTTTTATACCAAGGATGGCAAAGAACTTCCTTCTTCTAAAGGAATAAGTTTGACTCAGGAGCAGTGGTTAGCCTTCAAGAAAATTGTGCCTGACATAGAACAAGCCATTCAGAAAAAGGAGTCACGTGTATAA

Protein sequence

>Msa1393570

MDDAETKGRIEETVLKILQESNMDDVTESKIRKQASNELDLNLSQPPFKAFVKQIIEAFLIQKQQEQQKEEKEEGEEEEEEEEEKQQVKQEGASNKSTVYDDSGDLVICELGKKRKVTIQDFKGRTFVSIREFYTKDGKELPSSKGISLTQEQWLAFKKIVPDIEQAIQKKESRV*