AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0707250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0707250 MtrunA17_Chr8g0388461 93.678 174 6 1 1 174 1 169 7.23e-97 277
Msa0707250 MtrunA17_Chr7g0275791 48.864 176 82 3 3 174 2 173 2.89e-44 149
Msa0707250 MtrunA17_Chr3g0130571 36.937 111 69 1 60 170 31 140 2.09e-19 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0707250 AT4G10920.2 52.795 161 68 3 14 174 13 165 1.79e-49 157
Msa0707250 AT4G10920.1 52.795 161 68 3 14 174 13 165 1.79e-49 157
Msa0707250 AT5G09250.1 36.275 102 62 1 67 168 6 104 1.46e-19 79.3
Msa0707250 AT5G09250.3 46.032 63 34 0 105 167 44 106 3.27e-16 70.9
Msa0707250 AT5G09250.4 37.500 88 52 1 67 154 6 90 1.47e-15 69.3
Msa0707250 AT4G00980.1 31.325 166 98 3 9 174 19 168 8.42e-15 71.6
Msa0707250 AT5G09240.1 42.424 66 36 1 104 167 39 104 4.23e-13 62.8
Msa0707250 AT5G09250.2 35.443 79 48 1 67 145 6 81 2.11e-12 60.5
Msa0707250 AT5G09250.5 35.443 79 48 1 67 145 6 81 2.11e-12 60.5

Find 50 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTGAGCTCACTGGTTCTTT+TGG 0.249585 4_4:+80490272 None:intergenic
AGAACAAGCCATTCAGAAAA+AGG 0.298415 4_4:-80487409 Msa0707250:CDS
TTCGATTCTTCCTTTGGTTT+CGG 0.299411 4_4:+80490229 None:intergenic
TGAGGCTTGCTTTCGAATCT+TGG 0.308290 4_4:+80490154 None:intergenic
TGTTTCTTCGATTCTTCCTT+TGG 0.317008 4_4:+80490223 None:intergenic
TAATCATACAAATTTCTTAT+CGG 0.321341 4_4:+80487037 None:intergenic
ACAAAATGACACTAAGATTC+AGG 0.341487 4_4:+80487240 None:intergenic
CGTCCATGTTTGATTCTTGA+AGG 0.351225 4_4:+80490189 None:intergenic
AAAGAGAAAGGTGACAATTC+AGG 0.366183 4_4:-80489787 Msa0707250:CDS
CATCACAGAGAATTAATATA+TGG 0.371485 4_4:+80487078 None:intergenic
AAAGCAAGCCTCAAATGAAT+TGG 0.387647 4_4:-80490144 Msa0707250:CDS
AGCACTGTTTATGATGATTC+CGG 0.391789 4_4:-80489954 Msa0707250:CDS
CTTGGTATAAAACTCTCTAA+TGG 0.394017 4_4:+80489740 None:intergenic
AAAGAACTTCCTTCTTCTAA+AGG 0.401625 4_4:-80489711 Msa0707250:intron
TGAATGGCTTGTTCTATGTC+AGG 0.401909 4_4:+80487417 None:intergenic
TTGCTTTCGAATCTTGGATT+CGG 0.412374 4_4:+80490160 None:intergenic
AGGAAGTTCTTTGCCATCCT+TGG 0.414306 4_4:+80489722 None:intergenic
CTTTGAAGGGAGGCTGAGAT+AGG 0.417924 4_4:+80490114 None:intergenic
ATTTCAAGTCCTGAACAAAA+TGG 0.421684 4_4:+80487210 None:intergenic
TTGCTTGACGAAGGCTTTGA+AGG 0.429051 4_4:+80490100 None:intergenic
TGAATACTTCAACCTGCATA+TGG 0.452162 4_4:+80487358 None:intergenic
AGAAGAAGAAGAGAAACAAC+AGG 0.454315 4_4:-80490003 Msa0707250:CDS
TTCTCTGTGATGGTTGTGTT+CGG 0.468735 4_4:-80487067 Msa0707250:three_prime_UTR
ACAACTTTACCTTTAGAAGA+AGG 0.476393 4_4:+80489702 None:intergenic
TTTGTTCAGTGTAGTGCAGC+TGG 0.477037 4_4:-80487172 Msa0707250:three_prime_UTR
GCAGCAAGAACAACAGAAAG+AGG 0.479297 4_4:-80490051 Msa0707250:CDS
GTTAAGATCCAATTCATTTG+AGG 0.479566 4_4:+80490136 None:intergenic
CATATATTAATTCTCTGTGA+TGG 0.488772 4_4:-80487077 Msa0707250:three_prime_UTR
GTGACAATTCAGGATTTCAA+AGG 0.497487 4_4:-80489777 Msa0707250:CDS
GCAGCTGGAGTAGAATTTGT+AGG 0.500031 4_4:-80487157 Msa0707250:three_prime_UTR
TGACAATTCAGGATTTCAAA+GGG 0.528976 4_4:-80489776 Msa0707250:CDS
TTCAGGAATAAGTTTGACTC+AGG 0.531614 4_4:-80487469 Msa0707250:intron
TCAAGTATCACCACATCACT+TGG 0.535742 4_4:+80487313 None:intergenic
TTCGATGATTTGCTTGACGA+AGG 0.545920 4_4:+80490091 None:intergenic
TTTGACACAGCTGAGCTCAC+TGG 0.548836 4_4:+80490263 None:intergenic
TGCTTGACGAAGGCTTTGAA+GGG 0.552385 4_4:+80490101 None:intergenic
ACGAGATGACTTCCATATGC+AGG 0.564861 4_4:-80487370 Msa0707250:three_prime_UTR
GAAACAACAGGTTAAACAAG+AGG 0.566821 4_4:-80489991 Msa0707250:CDS
TTGACGAAGGCTTTGAAGGG+AGG 0.568942 4_4:+80490104 None:intergenic
ACAGAGAATTAATATATGGA+AGG 0.591935 4_4:+80487082 None:intergenic
ATGGATGACGCCGAAACCAA+AGG 0.594413 4_4:-80490239 Msa0707250:CDS
CTCGCAGATGACTAGATCAC+CGG 0.601997 4_4:+80489935 None:intergenic
TAAGTTTGACTCAGGAGCAG+TGG 0.602755 4_4:-80487461 Msa0707250:CDS
AAACAACAGGTTAAACAAGA+GGG 0.617440 4_4:-80489990 Msa0707250:CDS
AGTCCTGAACAAAATGGTCG+AGG 0.628397 4_4:+80487216 None:intergenic
TTGTAGGAAAACTCTAGAGG+AGG 0.645810 4_4:-80487141 Msa0707250:three_prime_UTR
ATTATGATTGCCAAGTGATG+TGG 0.653954 4_4:-80487323 Msa0707250:three_prime_UTR
GATCCTTCAAGAATCAAACA+TGG 0.657064 4_4:-80490192 Msa0707250:CDS
AATTTGTAGGAAAACTCTAG+AGG 0.680085 4_4:-80487144 Msa0707250:three_prime_UTR
CGGTGATCTAGTCATCTGCG+AGG 0.722262 4_4:-80489934 Msa0707250:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCATACAAAAAAAAATA+TGG + chr4_4:80488487-80488506 None:intergenic 10.0%
!! ATAAAATTTGAAAATGATAA+AGG - chr4_4:80488575-80488594 Msa0707250:intron 10.0%
!!! TTTTTTTTTTTACTTTTCAT+TGG - chr4_4:80489192-80489211 Msa0707250:intron 10.0%
!! AAAGAAAATTGTTAAAAAAG+CGG + chr4_4:80487014-80487033 None:intergenic 15.0%
!! GTCATATTATATAAAAGAAA+TGG + chr4_4:80488017-80488036 None:intergenic 15.0%
!!! AAACACCTTTTATTATAAAT+TGG - chr4_4:80488544-80488563 Msa0707250:intron 15.0%
!! TTCTACCAATTTATAATAAA+AGG + chr4_4:80488552-80488571 None:intergenic 15.0%
!!! AAGTATATCTACTTTTAATA+TGG - chr4_4:80488831-80488850 Msa0707250:intron 15.0%
!! AATGTTTCTTAGATATTAAA+TGG + chr4_4:80489040-80489059 None:intergenic 15.0%
!! TTTAATATCTAAGAAACATT+AGG - chr4_4:80489040-80489059 Msa0707250:intron 15.0%
!! TTAATATCTAAGAAACATTA+GGG - chr4_4:80489041-80489060 Msa0707250:intron 15.0%
!! TCATATATAATTTAGCAAAT+AGG - chr4_4:80489473-80489492 Msa0707250:intron 15.0%
!! TAATCATACAAATTTCTTAT+CGG + chr4_4:80490286-80490305 None:intergenic 15.0%
!! AGACTAATTGATAGAAATTA+TGG + chr4_4:80487680-80487699 None:intergenic 20.0%
!!! GCTAATTAGCTTAAATTTAA+CGG + chr4_4:80487746-80487765 None:intergenic 20.0%
!! TGTGCAAGTTAATAATAATT+TGG + chr4_4:80487884-80487903 None:intergenic 20.0%
!!! ATAATATGACATTGATTTTC+AGG - chr4_4:80488027-80488046 Msa0707250:intron 20.0%
!! AAAGAAAAAAAACATGAGTA+TGG - chr4_4:80488722-80488741 Msa0707250:intron 20.0%
!!! ATCTACTTTTAATATGGTAT+TGG - chr4_4:80488837-80488856 Msa0707250:intron 20.0%
!! AATTTATACAGTTTGAACTT+TGG - chr4_4:80488962-80488981 Msa0707250:intron 20.0%
!!! TAAGTTCTAACTAGTAAAAT+TGG + chr4_4:80489247-80489266 None:intergenic 20.0%
!!! ATTTTAATGCCAAACTTAAA+AGG + chr4_4:80489321-80489340 None:intergenic 20.0%
!! CTTAATTTAGTACTAAATTC+TGG - chr4_4:80489358-80489377 Msa0707250:intron 20.0%
!!! GTTTTATCTATAACTTTTCA+CGG + chr4_4:80489618-80489637 None:intergenic 20.0%
!! ATTTCGATTCAAATGTTTAT+TGG - chr4_4:80489649-80489668 Msa0707250:intron 20.0%
!! GAAACACAAATATTAGAATT+TGG + chr4_4:80489834-80489853 None:intergenic 20.0%
!! AATTCTAATATTTGTGTTTC+AGG - chr4_4:80489834-80489853 Msa0707250:intron 20.0%
! GAGAGTAAAAAATTACGAAA+CGG + chr4_4:80487413-80487432 None:intergenic 25.0%
! TTAACGATGAAATCAATTCA+TGG - chr4_4:80487453-80487472 Msa0707250:CDS 25.0%
! TGAAATCAATTCATGGAAAA+AGG - chr4_4:80487460-80487479 Msa0707250:CDS 25.0%
! GAAATCAATTCATGGAAAAA+GGG - chr4_4:80487461-80487480 Msa0707250:CDS 25.0%
! CCAAAATAATAATGTTAACC+AGG + chr4_4:80487492-80487511 None:intergenic 25.0%
!! CCTGGTTAACATTATTATTT+TGG - chr4_4:80487489-80487508 Msa0707250:intron 25.0%
! AGATTTCATCTTTCATTCTA+AGG + chr4_4:80487861-80487880 None:intergenic 25.0%
! ATTTCTTGACAATAGAACTT+AGG + chr4_4:80487916-80487935 None:intergenic 25.0%
! TTGTCAAGAAATATCAAGAT+TGG - chr4_4:80487924-80487943 Msa0707250:intron 25.0%
!! ATTGGATTAGAAACAGTTAA+AGG - chr4_4:80487942-80487961 Msa0707250:intron 25.0%
! AATGCAGTTTCGAATAAATA+GGG + chr4_4:80488217-80488236 None:intergenic 25.0%
! TCTTAATTAATACTCGATGT+GGG - chr4_4:80488327-80488346 Msa0707250:intron 25.0%
!! GCTTATATGAACCTTTAAAA+AGG + chr4_4:80488418-80488437 None:intergenic 25.0%
! ATTTGAAAATGATAAAGGCA+TGG - chr4_4:80488580-80488599 Msa0707250:intron 25.0%
!! AGTAGATATACTTGTGATTT+TGG + chr4_4:80488824-80488843 None:intergenic 25.0%
! ATTAGGGTTCAAAATAAGTT+GGG - chr4_4:80489057-80489076 Msa0707250:intron 25.0%
! TGAACAGAGTTAAGTAATAT+TGG + chr4_4:80489093-80489112 None:intergenic 25.0%
! ACTACTCATACTATCATATA+GGG + chr4_4:80489402-80489421 None:intergenic 25.0%
! TACTACTCATACTATCATAT+AGG + chr4_4:80489403-80489422 None:intergenic 25.0%
! CATGATAAAAATTATTCCAC+CGG - chr4_4:80489575-80489594 Msa0707250:intron 25.0%
!! ACGTAACTATGTGTTTTATA+AGG + chr4_4:80489791-80489810 None:intergenic 25.0%
! ATAGTTACGTTCTATAATTG+AGG - chr4_4:80489801-80489820 Msa0707250:intron 25.0%
! TAGTTACGTTCTATAATTGA+GGG - chr4_4:80489802-80489821 Msa0707250:intron 25.0%
! ACAGAGAATTAATATATGGA+AGG + chr4_4:80490241-80490260 None:intergenic 25.0%
! CATCACAGAGAATTAATATA+TGG + chr4_4:80490245-80490264 None:intergenic 25.0%
! CATATATTAATTCTCTGTGA+TGG - chr4_4:80490243-80490262 Msa0707250:exon 25.0%
GTTAAGATCCAATTCATTTG+AGG + chr4_4:80487187-80487206 None:intergenic 30.0%
AAACAACAGGTTAAACAAGA+GGG - chr4_4:80487330-80487349 Msa0707250:three_prime_UTR 30.0%
! ATCATAAACAGTGCTTTTGT+TGG + chr4_4:80487361-80487380 None:intergenic 30.0%
! GAATTGATTTCATCGTTAAC+CGG + chr4_4:80487452-80487471 None:intergenic 30.0%
TGACAATTCAGGATTTCAAA+GGG - chr4_4:80487544-80487563 Msa0707250:intron 30.0%
CTTGGTATAAAACTCTCTAA+TGG + chr4_4:80487583-80487602 None:intergenic 30.0%
!! CATTAGAGAGTTTTATACCA+AGG - chr4_4:80487581-80487600 Msa0707250:intron 30.0%
AAAGAACTTCCTTCTTCTAA+AGG - chr4_4:80487609-80487628 Msa0707250:intron 30.0%
! ACAACTTTACCTTTAGAAGA+AGG + chr4_4:80487621-80487640 None:intergenic 30.0%
GGAAACATCTTATGAACTTA+TGG + chr4_4:80487659-80487678 None:intergenic 30.0%
AAGCTAATTAGCAAAAAGCA+AGG - chr4_4:80487754-80487773 Msa0707250:intron 30.0%
AGAACAATAGAGAGAAGAAA+GGG - chr4_4:80488138-80488157 Msa0707250:intron 30.0%
GAATGCAGTTTCGAATAAAT+AGG + chr4_4:80488218-80488237 None:intergenic 30.0%
TTATTCGAAACTGCATTCTA+AGG - chr4_4:80488220-80488239 Msa0707250:intron 30.0%
TCTTAAAAGCTAGCTATCAA+GGG - chr4_4:80488290-80488309 Msa0707250:intron 30.0%
CACATCGAGTATTAATTAAG+AGG + chr4_4:80488328-80488347 None:intergenic 30.0%
CTCTTAATTAATACTCGATG+TGG - chr4_4:80488326-80488345 Msa0707250:intron 30.0%
! TGAACCTTTAAAAAGGAACA+CGG + chr4_4:80488411-80488430 None:intergenic 30.0%
TCAGATTTGTCATTGTTGAT+AGG + chr4_4:80488460-80488479 None:intergenic 30.0%
! AAAATGATAAAGGCATGGAA+TGG - chr4_4:80488585-80488604 Msa0707250:intron 30.0%
AAGTTCTTGAGTCTCTAATT+TGG + chr4_4:80488638-80488657 None:intergenic 30.0%
GACACGATGATCTATATATT+TGG - chr4_4:80488663-80488682 Msa0707250:intron 30.0%
ATAACATGACTACATGAGTA+TGG - chr4_4:80488689-80488708 Msa0707250:intron 30.0%
!!! TTTTAATATGGTATTGGCCT+TGG - chr4_4:80488843-80488862 Msa0707250:intron 30.0%
TATTAAATGGAGCACAACAA+GGG + chr4_4:80489027-80489046 None:intergenic 30.0%
ATATTAAATGGAGCACAACA+AGG + chr4_4:80489028-80489047 None:intergenic 30.0%
CATTAGGGTTCAAAATAAGT+TGG - chr4_4:80489056-80489075 Msa0707250:intron 30.0%
TTAGGGTTCAAAATAAGTTG+GGG - chr4_4:80489058-80489077 Msa0707250:intron 30.0%
GTTAAGTAATATTGGCAACA+AGG + chr4_4:80489085-80489104 None:intergenic 30.0%
TAGTTAGAACTTAGATGTCT+CGG - chr4_4:80489254-80489273 Msa0707250:intron 30.0%
TTAAAAGGAAGTTCTCAACT+GGG + chr4_4:80489306-80489325 None:intergenic 30.0%
!!! TGAGAACTTCCTTTTAAGTT+TGG - chr4_4:80489309-80489328 Msa0707250:intron 30.0%
CTACTCATACTATCATATAG+GGG + chr4_4:80489401-80489420 None:intergenic 30.0%
ACCAAGAAATTCAGAAAAGA+TGG - chr4_4:80489503-80489522 Msa0707250:intron 30.0%
! ACCATCTTTTCTGAATTTCT+TGG + chr4_4:80489507-80489526 None:intergenic 30.0%
!!! AAGATGGTTAGTGTTGTTTT+AGG - chr4_4:80489519-80489538 Msa0707250:intron 30.0%
ATAAAAATTATTCCACCGGT+TGG - chr4_4:80489579-80489598 Msa0707250:intron 30.0%
TGAATCGAAATCTCTGTTAA+TGG + chr4_4:80489640-80489659 None:intergenic 30.0%
ACAAAATGACACTAAGATTC+AGG + chr4_4:80490083-80490102 None:intergenic 30.0%
! ATTTCAAGTCCTGAACAAAA+TGG + chr4_4:80490113-80490132 None:intergenic 30.0%
AATTTGTAGGAAAACTCTAG+AGG - chr4_4:80490176-80490195 Msa0707250:CDS 30.0%
! TTCGATTCTTCCTTTGGTTT+CGG + chr4_4:80487094-80487113 None:intergenic 35.0%
TGTTTCTTCGATTCTTCCTT+TGG + chr4_4:80487100-80487119 None:intergenic 35.0%
GATCCTTCAAGAATCAAACA+TGG - chr4_4:80487128-80487147 Msa0707250:three_prime_UTR 35.0%
TTGCTTTCGAATCTTGGATT+CGG + chr4_4:80487163-80487182 None:intergenic 35.0%
AAAGCAAGCCTCAAATGAAT+TGG - chr4_4:80487176-80487195 Msa0707250:three_prime_UTR 35.0%
CAGAAAGAGGAAAAAGAAGA+AGG - chr4_4:80487282-80487301 Msa0707250:three_prime_UTR 35.0%
AGAAGAAGAAGAGAAACAAC+AGG - chr4_4:80487317-80487336 Msa0707250:three_prime_UTR 35.0%
GAAACAACAGGTTAAACAAG+AGG - chr4_4:80487329-80487348 Msa0707250:three_prime_UTR 35.0%
AGCACTGTTTATGATGATTC+CGG - chr4_4:80487366-80487385 Msa0707250:three_prime_UTR 35.0%
!!! TTTGGTTTTGCATTTCAGCT+TGG - chr4_4:80487507-80487526 Msa0707250:intron 35.0%
TCAGCTTGGAAAAAAGAGAA+AGG - chr4_4:80487521-80487540 Msa0707250:intron 35.0%
AAAGAGAAAGGTGACAATTC+AGG - chr4_4:80487533-80487552 Msa0707250:intron 35.0%
GTGACAATTCAGGATTTCAA+AGG - chr4_4:80487543-80487562 Msa0707250:intron 35.0%
!! AGAGAGTTTTATACCAAGGA+TGG - chr4_4:80487585-80487604 Msa0707250:intron 35.0%
AATTTAACGGCCAAGGATAA+GGG + chr4_4:80487733-80487752 None:intergenic 35.0%
AAATTTAACGGCCAAGGATA+AGG + chr4_4:80487734-80487753 None:intergenic 35.0%
TAGCTTAAATTTAACGGCCA+AGG + chr4_4:80487740-80487759 None:intergenic 35.0%
ATTAGCAAAAAGCAAGGCAA+CGG - chr4_4:80487760-80487779 Msa0707250:intron 35.0%
GAGAACAATAGAGAGAAGAA+AGG - chr4_4:80488137-80488156 Msa0707250:intron 35.0%
TGGAATGTGACAGTTTACAT+TGG - chr4_4:80488168-80488187 Msa0707250:intron 35.0%
AAATAGGGAAGCTATGCAAT+TGG + chr4_4:80488202-80488221 None:intergenic 35.0%
! CTGGCTTATTTCTCACAATA+GGG - chr4_4:80488260-80488279 Msa0707250:intron 35.0%
CTCTTAAAAGCTAGCTATCA+AGG - chr4_4:80488289-80488308 Msa0707250:intron 35.0%
CTTAAAAGCTAGCTATCAAG+GGG - chr4_4:80488291-80488310 Msa0707250:intron 35.0%
TCGGATTAAGGATGTTGATA+GGG + chr4_4:80488374-80488393 None:intergenic 35.0%
TTCGGATTAAGGATGTTGAT+AGG + chr4_4:80488375-80488394 None:intergenic 35.0%
!! TGTAGAAGCATTTCGGATTA+AGG + chr4_4:80488386-80488405 None:intergenic 35.0%
! CAAACCGTGTTCCTTTTTAA+AGG - chr4_4:80488404-80488423 Msa0707250:intron 35.0%
! TGGCCTTGGTTATATACTAT+AGG - chr4_4:80488857-80488876 Msa0707250:intron 35.0%
CCACCTATAGTATATAACCA+AGG + chr4_4:80488863-80488882 None:intergenic 35.0%
CCTTGGTTATATACTATAGG+TGG - chr4_4:80488860-80488879 Msa0707250:intron 35.0%
TCTCACTTTAGCATTTCTCA+TGG - chr4_4:80488912-80488931 Msa0707250:intron 35.0%
TAGCATTTCTCATGGATGTT+TGG - chr4_4:80488920-80488939 Msa0707250:intron 35.0%
! TAGGGTTCAAAATAAGTTGG+GGG - chr4_4:80489059-80489078 Msa0707250:intron 35.0%
GAGCTTTCATGATTCATGTA+AGG + chr4_4:80489135-80489154 None:intergenic 35.0%
CTTAAAAGGAAGTTCTCAAC+TGG + chr4_4:80489307-80489326 None:intergenic 35.0%
CATACTATCATATAGGGGAA+GGG + chr4_4:80489396-80489415 None:intergenic 35.0%
TCATACTATCATATAGGGGA+AGG + chr4_4:80489397-80489416 None:intergenic 35.0%
!!! ATGGTTAGTGTTGTTTTAGG+TGG - chr4_4:80489522-80489541 Msa0707250:intron 35.0%
TTCAGGAATAAGTTTGACTC+AGG - chr4_4:80489851-80489870 Msa0707250:intron 35.0%
AGAACAAGCCATTCAGAAAA+AGG - chr4_4:80489911-80489930 Msa0707250:intron 35.0%
AAAAAGGAGTCACGTGTATA+AGG - chr4_4:80489927-80489946 Msa0707250:intron 35.0%
TGAATACTTCAACCTGCATA+TGG + chr4_4:80489965-80489984 None:intergenic 35.0%
ATTATGATTGCCAAGTGATG+TGG - chr4_4:80489997-80490016 Msa0707250:CDS 35.0%
!! ACTGGTTCTTTTGGAGAAAG+GGG + chr4_4:80487042-80487061 None:intergenic 40.0%
!!! CACTGGTTCTTTTGGAGAAA+GGG + chr4_4:80487043-80487062 None:intergenic 40.0%
!!! TCACTGGTTCTTTTGGAGAA+AGG + chr4_4:80487044-80487063 None:intergenic 40.0%
CGTCCATGTTTGATTCTTGA+AGG + chr4_4:80487134-80487153 None:intergenic 40.0%
!! TTCGATGATTTGCTTGACGA+AGG + chr4_4:80487232-80487251 None:intergenic 40.0%
CATGGAAAAAGGGTTATTCC+TGG - chr4_4:80487471-80487490 Msa0707250:intron 40.0%
TCCAAACAAACCCTTATCCT+TGG - chr4_4:80487720-80487739 Msa0707250:intron 40.0%
!! GATTTTCAGGAGACATCTGA+TGG - chr4_4:80488040-80488059 Msa0707250:intron 40.0%
AGAGAAGAAAGGGATTTGAG+TGG - chr4_4:80488148-80488167 Msa0707250:intron 40.0%
! GCTGGCTTATTTCTCACAAT+AGG - chr4_4:80488259-80488278 Msa0707250:intron 40.0%
! TTAAGGATGTTGATAGGGAC+CGG + chr4_4:80488369-80488388 None:intergenic 40.0%
!! CACGGTTTGTAGAAGCATTT+CGG + chr4_4:80488393-80488412 None:intergenic 40.0%
GTAGTTATCGTTTCTGTCTG+AGG - chr4_4:80488771-80488790 Msa0707250:intron 40.0%
GCCAAATTGATCTGCTTTGT+TGG - chr4_4:80489441-80489460 Msa0707250:intron 40.0%
GCCAACAAAGCAGATCAATT+TGG + chr4_4:80489445-80489464 None:intergenic 40.0%
! GTCAGGCACAATTTTCTTGA+AGG + chr4_4:80489889-80489908 None:intergenic 40.0%
!! TGAATGGCTTGTTCTATGTC+AGG + chr4_4:80489906-80489925 None:intergenic 40.0%
! ACGTGACTCCTTTTTCTGAA+TGG + chr4_4:80489922-80489941 None:intergenic 40.0%
TCAAGTATCACCACATCACT+TGG + chr4_4:80490010-80490029 None:intergenic 40.0%
! TTGTAGGAAAACTCTAGAGG+AGG - chr4_4:80490179-80490198 Msa0707250:CDS 40.0%
TTCTCTGTGATGGTTGTGTT+CGG - chr4_4:80490253-80490272 Msa0707250:exon 40.0%
GAGCTCAGCTGTGTCAAAAA+TGG - chr4_4:80487062-80487081 Msa0707250:three_prime_UTR 45.0%
! TGAGGCTTGCTTTCGAATCT+TGG + chr4_4:80487169-80487188 None:intergenic 45.0%
!! TGCTTGACGAAGGCTTTGAA+GGG + chr4_4:80487222-80487241 None:intergenic 45.0%
! TTGCTTGACGAAGGCTTTGA+AGG + chr4_4:80487223-80487242 None:intergenic 45.0%
GCAGCAAGAACAACAGAAAG+AGG - chr4_4:80487269-80487288 Msa0707250:three_prime_UTR 45.0%
AGGAAGTTCTTTGCCATCCT+TGG + chr4_4:80487601-80487620 None:intergenic 45.0%
! GCCAAGGATAAGGGTTTGTT+TGG + chr4_4:80487724-80487743 None:intergenic 45.0%
AGGAGACATCTGATGGAAAC+TGG - chr4_4:80488047-80488066 Msa0707250:intron 45.0%
GCTATCAAGGGGTAAGAAAC+AGG - chr4_4:80488302-80488321 Msa0707250:intron 45.0%
TTGATAGGGACCGGTATTGT+GGG + chr4_4:80488360-80488379 None:intergenic 45.0%
GCTCAAGAGTCATGAGAAGA+AGG - chr4_4:80488508-80488527 Msa0707250:intron 45.0%
! TTATTCCACCGGTTGGAGTT+AGG - chr4_4:80489586-80489605 Msa0707250:intron 45.0%
ATACAACCAACTCCGTGTAG+TGG - chr4_4:80489723-80489742 Msa0707250:CDS 45.0%
TACAACCAACTCCGTGTAGT+GGG - chr4_4:80489724-80489743 Msa0707250:CDS 45.0%
CTAAGCTTTCTCCCACTACA+CGG + chr4_4:80489738-80489757 None:intergenic 45.0%
TAAGTTTGACTCAGGAGCAG+TGG - chr4_4:80489859-80489878 Msa0707250:intron 45.0%
ACGAGATGACTTCCATATGC+AGG - chr4_4:80489950-80489969 Msa0707250:CDS 45.0%
! GTACCTCGACCATTTTGTTC+AGG - chr4_4:80490101-80490120 Msa0707250:CDS 45.0%
AGTCCTGAACAAAATGGTCG+AGG + chr4_4:80490107-80490126 None:intergenic 45.0%
TTTGTTCAGTGTAGTGCAGC+TGG - chr4_4:80490148-80490167 Msa0707250:CDS 45.0%
GCAGCTGGAGTAGAATTTGT+AGG - chr4_4:80490163-80490182 Msa0707250:CDS 45.0%
!!! GCTGAGCTCACTGGTTCTTT+TGG + chr4_4:80487051-80487070 None:intergenic 50.0%
TTTGACACAGCTGAGCTCAC+TGG + chr4_4:80487060-80487079 None:intergenic 50.0%
ATGGATGACGCCGAAACCAA+AGG - chr4_4:80487081-80487100 Msa0707250:three_prime_UTR 50.0%
! CTTTGAAGGGAGGCTGAGAT+AGG + chr4_4:80487209-80487228 None:intergenic 50.0%
!! TTGACGAAGGCTTTGAAGGG+AGG + chr4_4:80487219-80487238 None:intergenic 50.0%
CTCGCAGATGACTAGATCAC+CGG + chr4_4:80487388-80487407 None:intergenic 50.0%
GGGAAGCTATGCAATTGGCA+GGG + chr4_4:80488197-80488216 None:intergenic 50.0%
AGGGAAGCTATGCAATTGGC+AGG + chr4_4:80488198-80488217 None:intergenic 50.0%
GGCACAACTATGACACAAGC+TGG - chr4_4:80488241-80488260 Msa0707250:intron 50.0%
TGATAGGGACCGGTATTGTG+GGG + chr4_4:80488359-80488378 None:intergenic 50.0%
! GTTGATAGGGACCGGTATTG+TGG + chr4_4:80488361-80488380 None:intergenic 50.0%
AGATGTCTCGGCGTTGCAAT+TGG - chr4_4:80489266-80489285 Msa0707250:intron 50.0%
TAGGTGGTCTGTGCATACAG+CGG - chr4_4:80489538-80489557 Msa0707250:intron 50.0%
GGTATCCACCTAACTCCAAC+CGG + chr4_4:80489597-80489616 None:intergenic 50.0%
TTTCTCCCACTACACGGAGT+TGG + chr4_4:80489732-80489751 None:intergenic 50.0%
CGGTGATCTAGTCATCTGCG+AGG - chr4_4:80487386-80487405 Msa0707250:exon 55.0%
CTCTTTCGCACGCACTTCAC+CGG - chr4_4:80487430-80487449 Msa0707250:CDS 55.0%
GGGACTTGACCCCACAATAC+CGG - chr4_4:80488347-80488366 Msa0707250:intron 55.0%
! TTCCACCGGTTGGAGTTAGG+TGG - chr4_4:80489589-80489608 Msa0707250:intron 55.0%
ATCCACCTAACTCCAACCGG+TGG + chr4_4:80489594-80489613 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 80487000 80490342 80487000 ID=Msa0707250;Name=Msa0707250
chr4_4 mRNA 80487000 80490342 80487000 ID=Msa0707250-mRNA-1;Parent=Msa0707250;Name=Msa0707250-mRNA-1;_AED=0.06;_eAED=0.06;_QI=81|1|1|1|1|1|3|395|174
chr4_4 exon 80487000 80487486 80487000 ID=Msa0707250-mRNA-1:exon:26251;Parent=Msa0707250-mRNA-1
chr4_4 exon 80489712 80489817 80489712 ID=Msa0707250-mRNA-1:exon:26250;Parent=Msa0707250-mRNA-1
chr4_4 exon 80489935 80490342 80489935 ID=Msa0707250-mRNA-1:exon:26249;Parent=Msa0707250-mRNA-1
chr4_4 five_prime_UTR 80490262 80490342 80490262 ID=Msa0707250-mRNA-1:five_prime_utr;Parent=Msa0707250-mRNA-1
chr4_4 CDS 80489935 80490261 80489935 ID=Msa0707250-mRNA-1:cds;Parent=Msa0707250-mRNA-1
chr4_4 CDS 80489712 80489817 80489712 ID=Msa0707250-mRNA-1:cds;Parent=Msa0707250-mRNA-1
chr4_4 CDS 80487395 80487486 80487395 ID=Msa0707250-mRNA-1:cds;Parent=Msa0707250-mRNA-1
chr4_4 three_prime_UTR 80487000 80487394 80487000 ID=Msa0707250-mRNA-1:three_prime_utr;Parent=Msa0707250-mRNA-1
Gene Sequence

>Msa0707250

ATGGATGACGCCGAAACCAAAGGAAGAATCGAAGAAACAGTTTTGAAGATCCTTCAAGAATCAAACATGGACGACGTCACCGAATCCAAGATTCGAAAGCAAGCCTCAAATGAATTGGATCTTAACCTATCTCAGCCTCCCTTCAAAGCCTTCGTCAAGCAAATCATCGAAGCTTTTCTTATACAGAAGCAGCAAGAACAACAGAAAGAGGAAAAAGAAGAAGGCGAAGAAGAAGAAGAAGAAGAAGAGAAACAACAGGTTAAACAAGAGGGAGCTTCCAACAAAAGCACTGTTTATGATGATTCCGGTGATCTAGTCATCTGCGAGCTTGGAAAAAAGAGAAAGGTGACAATTCAGGATTTCAAAGGGAGAACATTTGTCTCCATTAGAGAGTTTTATACCAAGGATGGCAAAGAACTTCCTTCTTCTAAAGGAATAAGTTTGACTCAGGAGCAGTGGTTAGCCTTCAAGAAAATTGTGCCTGACATAGAACAAGCCATTCAGAAAAAGGAGTCACGTGTATAA

Protein sequence

>Msa0707250

MDDAETKGRIEETVLKILQESNMDDVTESKIRKQASNELDLNLSQPPFKAFVKQIIEAFLIQKQQEQQKEEKEEGEEEEEEEEKQQVKQEGASNKSTVYDDSGDLVICELGKKRKVTIQDFKGRTFVSIREFYTKDGKELPSSKGISLTQEQWLAFKKIVPDIEQAIQKKESRV*