AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0047540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0047540 MtrunA17_Chr4g0020331 86.616 396 51 1 20 415 22 415 0.0 695
Msa0047540 MtrunA17_Chr3g0103741 85.783 415 53 3 4 415 12 423 0.0 687
Msa0047540 MtrunA17_Chr4g0063911 47.208 394 196 3 24 415 15 398 7.33e-115 341
Msa0047540 MtrunA17_Chr4g0022871 32.512 406 247 8 28 415 14 410 8.46e-58 194
Msa0047540 MtrunA17_Chr2g0280971 33.010 412 245 10 24 415 39 439 3.07e-57 194
Msa0047540 MtrunA17_Chr4g0022861 33.166 398 237 10 37 415 7 394 2.45e-55 187
Msa0047540 MtrunA17_Chr2g0280991 32.203 413 237 11 30 415 23 419 2.26e-52 181
Msa0047540 MtrunA17_Chr2g0323381 33.252 409 240 9 28 415 14 410 3.03e-51 177
Msa0047540 MtrunA17_Chr4g0022801 32.558 344 172 11 121 415 69 401 8.17e-37 138
Msa0047540 MtrunA17_Chr8g0335821 29.714 350 213 9 92 415 20 362 1.87e-29 117
Msa0047540 MtrunA17_Chr1g0184961 31.855 248 138 7 73 296 112 352 2.23e-26 108
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0047540 AT1G70330.1 65.865 416 139 2 2 415 36 450 0.0 537
Msa0047540 AT1G02630.1 47.704 392 189 5 24 415 14 389 7.74e-122 359
Msa0047540 AT1G02630.2 40.816 392 172 6 24 415 14 345 1.67e-91 280
Msa0047540 AT4G05120.1 32.203 413 238 11 28 415 17 412 1.21e-50 176
Msa0047540 AT4G05120.2 32.203 413 238 11 28 415 17 412 1.21e-50 176
Msa0047540 AT4G05110.3 31.068 412 240 12 30 415 19 412 2.78e-48 170
Msa0047540 AT4G05110.1 31.068 412 240 12 30 415 19 412 2.78e-48 170
Msa0047540 AT4G05110.2 31.068 412 240 12 30 415 19 412 8.27e-48 169
Msa0047540 AT4G05130.1 30.175 401 244 11 37 415 26 412 2.53e-47 167
Msa0047540 AT1G61630.1 29.684 411 253 9 28 415 15 412 5.52e-46 164
Msa0047540 AT4G05140.1 29.238 407 259 10 28 415 17 413 1.74e-43 157
Msa0047540 AT3G09990.1 29.383 405 244 9 37 415 25 413 3.41e-43 156

Find 114 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTGGGGCTGTTGGGATTTC+AGG 0.094893 1_1:+80493712 Msa0047540:CDS
GCTCTATTATAGCTTGGTTT+TGG 0.174004 1_1:+80494771 Msa0047540:CDS
ACACTATTAACGTGTCTCTT+AGG 0.195857 1_1:+80494626 Msa0047540:CDS
TACACGCAGGCGGTCATTGC+TGG 0.225351 1_1:+80493796 Msa0047540:CDS
AGTGTGTTCTTCTTAGTTAT+TGG 0.230173 1_1:+80494737 Msa0047540:CDS
TTCATTATAGTACTTTATAA+TGG 0.242520 1_1:-80494225 None:intergenic
TTGGTGCAGGGATCTATTCT+TGG 0.258857 1_1:+80493748 Msa0047540:CDS
TGGCTCCGCTGGTGAGTTGC+CGG 0.294888 1_1:+80493768 Msa0047540:CDS
GCCACAATATATGCAGGTTT+TGG 0.298213 1_1:-80494831 None:intergenic
ACTCAACTAGAAGTCAAAAC+TGG 0.324989 1_1:+80494857 Msa0047540:three_prime_UTR
TTCTTCTACCTTCATGTTCA+AGG 0.339199 1_1:+80493341 Msa0047540:CDS
ACACATTAAAGCAAGTAATA+AGG 0.345288 1_1:-80494454 None:intergenic
ATCTCTGTCCGGAAGAATTT+CGG 0.346613 1_1:-80494596 None:intergenic
TTAGTTATTGGTCTGGCTGC+TGG 0.347855 1_1:+80494749 Msa0047540:CDS
AAGCAAGTAATAAGGAGAAT+TGG 0.349646 1_1:-80494446 None:intergenic
ACGTCACTGCTGGGGCTGTT+GGG 0.361788 1_1:+80493704 Msa0047540:CDS
TACGTCACTGCTGGGGCTGT+TGG 0.363518 1_1:+80493703 Msa0047540:CDS
CTTGATGTCGTGTATGTTAA+GGG 0.366056 1_1:+80493655 Msa0047540:CDS
TTTAATGTGTTTGACCTTGT+TGG 0.367568 1_1:+80494467 Msa0047540:CDS
CTCTGCATGCTGCAACTTCA+CGG 0.371199 1_1:-80494699 None:intergenic
CTATAATGAACTTAAGATTC+AGG 0.375812 1_1:+80494238 Msa0047540:CDS
TTCAGGTGTGGCTAATGCTT+TGG 0.388115 1_1:+80493729 Msa0047540:CDS
ATACGGTCAACGCTTGCATC+GGG 0.388734 1_1:-80493490 None:intergenic
TCATTATAGTACTTTATAAT+GGG 0.388994 1_1:-80494224 None:intergenic
ACTCTCAGCTTCTTAAAGAT+TGG 0.396591 1_1:+80494420 Msa0047540:CDS
ACACGCAGGCGGTCATTGCT+GGG 0.398252 1_1:+80493797 Msa0047540:CDS
TGCACGGTCCGAAATTCTTC+CGG 0.401715 1_1:+80494588 Msa0047540:CDS
CTGCTGGCTCTATTATAGCT+TGG 0.403267 1_1:+80494765 Msa0047540:CDS
GTCGAGTCGGGTTGTATAAC+GGG 0.404515 1_1:+80493677 Msa0047540:CDS
GTGACGCTTGCAATATTTCC+TGG 0.410311 1_1:+80494377 Msa0047540:CDS
ATAGATATATACAGATTTCC+TGG 0.410882 1_1:-80494803 None:intergenic
GGGTGCTTGTTTCTTTCCTA+AGG 0.415931 1_1:+80494075 Msa0047540:CDS
GGTTTCGTTAATTTGTTTCC+CGG 0.422959 1_1:+80494884 Msa0047540:three_prime_UTR
CACTATTAACGTGTCTCTTA+GGG 0.428475 1_1:+80494627 Msa0047540:CDS
GTTCTTCTTAGTTATTGGTC+TGG 0.429994 1_1:+80494742 Msa0047540:CDS
CTGTCTGGAGATCAACTGTA+TGG 0.434174 1_1:+80494300 Msa0047540:CDS
GGTCGAGTCGGGTTGTATAA+CGG 0.441509 1_1:+80493676 Msa0047540:CDS
CTAGAAGTCAAAACTGGGAT+TGG 0.447143 1_1:+80494863 Msa0047540:three_prime_UTR
GCTTGATGTCGTGTATGTTA+AGG 0.447841 1_1:+80493654 Msa0047540:CDS
TTACAAAGTTTACACGTGTC+CGG 0.450454 1_1:-80494903 None:intergenic
GTCCTTTGACAGTATCTGTC+TGG 0.460668 1_1:+80494285 Msa0047540:CDS
GCATCGGCTATTTGTTCCCA+TGG 0.462726 1_1:+80493425 Msa0047540:CDS
CAACGCTTGCATCGGGGTAA+AGG 0.467006 1_1:-80493483 None:intergenic
ATACCACTTGATTGTTCCTA+AGG 0.474334 1_1:-80494327 None:intergenic
GGATCTATTCTTGGCTCCGC+TGG 0.479504 1_1:+80493757 Msa0047540:CDS
TGTGGCTAATGCTTTGGTGC+AGG 0.485275 1_1:+80493735 Msa0047540:CDS
CACGCAGGCGGTCATTGCTG+GGG 0.489338 1_1:+80493798 Msa0047540:CDS
AGAAAGTAGCAGAAGACAAA+TGG 0.493821 1_1:+80493371 Msa0047540:CDS
TTAGGAACAATCAAGTGGTA+TGG 0.496112 1_1:+80494329 Msa0047540:CDS
TACAAAGTTTACACGTGTCC+GGG 0.498269 1_1:-80494902 None:intergenic
TACTGTTAAAATGTATAAGA+AGG 0.499126 1_1:+80494929 Msa0047540:three_prime_UTR
ACCATTGTCGTCTTCAACGG+CGG 0.502286 1_1:-80494264 None:intergenic
GTTTACACGCAAGATGCCTC+TGG 0.510856 1_1:+80494113 Msa0047540:CDS
TTGCAGCATGCAGAGACTGC+GGG 0.517119 1_1:+80494707 Msa0047540:CDS
TGTCTCTTAGGGCTTACAAA+TGG 0.520478 1_1:+80494638 Msa0047540:CDS
TGCAAGCATCCTAAGAAGAG+AGG 0.520652 1_1:-80494569 None:intergenic
AATGAGATTTGTGTCGGTTG+AGG 0.521136 1_1:-80493570 None:intergenic
CTCTTCTTAGGATGCTTGCA+CGG 0.521892 1_1:+80494572 Msa0047540:CDS
TGTATGTTAAGGGTCGAGTC+GGG 0.521957 1_1:+80493665 Msa0047540:CDS
ACAATCAAGTGGTATGGGCT+CGG 0.529311 1_1:+80494335 Msa0047540:CDS
AGTGAAGCCACAATATATGC+AGG 0.530023 1_1:-80494837 None:intergenic
ACCGCCTGCGTGTACCTCTC+CGG 0.532675 1_1:-80493787 None:intergenic
GGCTGTTGGGATTTCAGGTG+TGG 0.535654 1_1:+80493717 Msa0047540:CDS
AAATCATCAATACACTGGTA+AGG 0.536010 1_1:-80494664 None:intergenic
TCAACTGTATGGGATACCTT+AGG 0.538806 1_1:+80494311 Msa0047540:CDS
TGTGATTATGTTCATATGCA+TGG 0.539930 1_1:+80494175 Msa0047540:CDS
GATACGGTCAACGCTTGCAT+CGG 0.540085 1_1:-80493491 None:intergenic
GTGTATGTTAAGGGTCGAGT+CGG 0.540507 1_1:+80493664 Msa0047540:CDS
ATCTACTTCACACTTGGCAT+CGG 0.551559 1_1:+80493409 Msa0047540:CDS
TTTGTCGTCCTTGAACATGA+AGG 0.552481 1_1:-80493349 None:intergenic
TAGGAACAATCAAGTGGTAT+GGG 0.556979 1_1:+80494330 Msa0047540:CDS
CTCAACTAGAAGTCAAAACT+GGG 0.561058 1_1:+80494858 Msa0047540:three_prime_UTR
GTGGCTAATGCTTTGGTGCA+GGG 0.564289 1_1:+80493736 Msa0047540:CDS
AGACACGTTAATAGTGTCAC+AGG 0.565534 1_1:-80494620 None:intergenic
AGGACCATTGTCGTCTTCAA+CGG 0.572794 1_1:-80494267 None:intergenic
AACATACACGACATCAAGCA+AGG 0.573774 1_1:-80493650 None:intergenic
GTGTCACAGGAATCTCTGTC+CGG 0.575678 1_1:-80494607 None:intergenic
TCCAAAACCTGCATATATTG+TGG 0.590287 1_1:+80494830 Msa0047540:three_prime_UTR
AGCTAAAATCATCAATACAC+TGG 0.598738 1_1:-80494669 None:intergenic
TGCAAAGTAGAGCAAAGATA+CGG 0.603721 1_1:-80493507 None:intergenic
ACATCTTCTGTAATGTAACC+AGG 0.604109 1_1:-80494395 None:intergenic
ACGCAGGCGGTCATTGCTGG+GGG 0.609305 1_1:+80493799 Msa0047540:CDS
TATATAATCTACTTCACACT+TGG 0.609971 1_1:+80493403 Msa0047540:CDS
GTTGCAGCATGCAGAGACTG+CGG 0.611240 1_1:+80494706 Msa0047540:CDS
AGGTAGAAGAAGAACAATGG+TGG 0.611992 1_1:-80493329 None:intergenic
CTGTGATGAATGCGTTCCAT+GGG 0.612636 1_1:-80493441 None:intergenic
TGTCTGGAGATCAACTGTAT+GGG 0.613864 1_1:+80494301 Msa0047540:CDS
GCAAGCATCCTAAGAAGAGA+GGG 0.616215 1_1:-80494568 None:intergenic
GCTGTGATGAATGCGTTCCA+TGG 0.616389 1_1:-80493442 None:intergenic
CGTGGGAATGAGATTTGTGT+CGG 0.618153 1_1:-80493576 None:intergenic
CCGCTGGTGAGTTGCCGGAG+AGG 0.619123 1_1:+80493773 Msa0047540:CDS
AATCTTTAAGAAGCTGAGAG+TGG 0.626615 1_1:-80494418 None:intergenic
CTCCAGACAGATACTGTCAA+AGG 0.635770 1_1:-80494287 None:intergenic
AAGCAAGGGAACTATGAGGA+GGG 0.636359 1_1:-80493635 None:intergenic
ATCCAACGTTGATCCTCACG+TGG 0.642546 1_1:-80493594 None:intergenic
CCTCTCCGGCAACTCACCAG+CGG 0.643402 1_1:-80493773 None:intergenic
AAGGTAAGAGAAGTAATCAA+CGG 0.645014 1_1:-80493464 None:intergenic
CAAGCAAGGGAACTATGAGG+AGG 0.646036 1_1:-80493636 None:intergenic
CATCAAGCAAGGGAACTATG+AGG 0.650180 1_1:-80493639 None:intergenic
GCCGGAGAGGTACACGCAGG+CGG 0.656282 1_1:+80493786 Msa0047540:CDS
ACATACACGACATCAAGCAA+GGG 0.657824 1_1:-80493649 None:intergenic
TCCCACGTGAGGATCAACGT+TGG 0.661083 1_1:+80493592 Msa0047540:CDS
TGAAGGTAGAAGAAGAACAA+TGG 0.668431 1_1:-80493332 None:intergenic
ACAAATCTCATTCCCACGTG+AGG 0.669174 1_1:+80493581 Msa0047540:CDS
TGCAGCATGCAGAGACTGCG+GGG 0.670996 1_1:+80494708 Msa0047540:CDS
TACGGTCAACGCTTGCATCG+GGG 0.672941 1_1:-80493489 None:intergenic
CAATGATAAAGGGACCAACA+TGG 0.675323 1_1:-80494998 None:intergenic
ATACCTTAGGAACAATCAAG+TGG 0.685947 1_1:+80494324 Msa0047540:CDS
GGTTGAGGATGATGATGATG+AGG 0.690333 1_1:-80493555 None:intergenic
GCCGCCGTTGAAGACGACAA+TGG 0.692231 1_1:+80494263 Msa0047540:CDS
TAATGAACTTAAGATTCAGG+CGG 0.703355 1_1:+80494241 Msa0047540:CDS
TCCAACGTTGATCCTCACGT+GGG 0.722026 1_1:-80493593 None:intergenic
GTTGCCGGAGAGGTACACGC+AGG 0.746866 1_1:+80493783 Msa0047540:CDS
CTAGAAGGTATACTGCAGTG+AGG 0.762315 1_1:-80494496 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCATTATAGTACTTTATAAT+GGG - chr1_1:80494227-80494246 None:intergenic 15.0%
!! TTCATTATAGTACTTTATAA+TGG - chr1_1:80494228-80494247 None:intergenic 15.0%
!! TCATTATAGTACTTTATAAT+GGG - chr1_1:80494227-80494246 None:intergenic 15.0%
!! TTCATTATAGTACTTTATAA+TGG - chr1_1:80494228-80494247 None:intergenic 15.0%
!! GAAAGAAAAAAAAAAGAAGA+AGG - chr1_1:80493847-80493866 None:intergenic 20.0%
!! ATAAAACATGATATGAGAAT+GGG - chr1_1:80493913-80493932 None:intergenic 20.0%
!! AATAAAACATGATATGAGAA+TGG - chr1_1:80493914-80493933 None:intergenic 20.0%
!! TACTGTTAAAATGTATAAGA+AGG + chr1_1:80494929-80494948 Msa0047540:three_prime_UTR 20.0%
!! GAAAGAAAAAAAAAAGAAGA+AGG - chr1_1:80493847-80493866 None:intergenic 20.0%
!! ATAAAACATGATATGAGAAT+GGG - chr1_1:80493913-80493932 None:intergenic 20.0%
!! AATAAAACATGATATGAGAA+TGG - chr1_1:80493914-80493933 None:intergenic 20.0%
!! TACTGTTAAAATGTATAAGA+AGG + chr1_1:80494929-80494948 Msa0047540:three_prime_UTR 20.0%
! TATATAATCTACTTCACACT+TGG + chr1_1:80493403-80493422 Msa0047540:CDS 25.0%
!!! TTTTTTTCTTTCCCTACTTT+TGG + chr1_1:80493855-80493874 Msa0047540:intron 25.0%
! TGAATGGAAAATAATGTGTA+AGG + chr1_1:80493985-80494004 Msa0047540:intron 25.0%
!! GTAAATGGTTTTTCATTTCA+GGG + chr1_1:80494054-80494073 Msa0047540:intron 25.0%
!! TAAATGGTTTTTCATTTCAG+GGG + chr1_1:80494055-80494074 Msa0047540:intron 25.0%
! CTATAATGAACTTAAGATTC+AGG + chr1_1:80494238-80494257 Msa0047540:CDS 25.0%
! ACACATTAAAGCAAGTAATA+AGG - chr1_1:80494457-80494476 None:intergenic 25.0%
! ATAGATATATACAGATTTCC+TGG - chr1_1:80494806-80494825 None:intergenic 25.0%
! TATATAATCTACTTCACACT+TGG + chr1_1:80493403-80493422 Msa0047540:CDS 25.0%
!!! TTTTTTTCTTTCCCTACTTT+TGG + chr1_1:80493855-80493874 Msa0047540:intron 25.0%
! TGAATGGAAAATAATGTGTA+AGG + chr1_1:80493985-80494004 Msa0047540:intron 25.0%
!! GTAAATGGTTTTTCATTTCA+GGG + chr1_1:80494054-80494073 Msa0047540:intron 25.0%
!! TAAATGGTTTTTCATTTCAG+GGG + chr1_1:80494055-80494074 Msa0047540:intron 25.0%
! CTATAATGAACTTAAGATTC+AGG + chr1_1:80494238-80494257 Msa0047540:CDS 25.0%
! ACACATTAAAGCAAGTAATA+AGG - chr1_1:80494457-80494476 None:intergenic 25.0%
! ATAGATATATACAGATTTCC+TGG - chr1_1:80494806-80494825 None:intergenic 25.0%
AAGGTAAGAGAAGTAATCAA+CGG - chr1_1:80493467-80493486 None:intergenic 30.0%
!!! GCAAATAGTTTTTTGTATGC+TGG + chr1_1:80493953-80493972 Msa0047540:intron 30.0%
!!! AGTTTTTTGTATGCTGGATT+TGG + chr1_1:80493959-80493978 Msa0047540:intron 30.0%
!!! GTTTTTTGTATGCTGGATTT+GGG + chr1_1:80493960-80493979 Msa0047540:intron 30.0%
! ATTGCTTGTTTCTTGAACTT+TGG + chr1_1:80494027-80494046 Msa0047540:intron 30.0%
! TTGTTTCTTGAACTTTGGAA+AGG + chr1_1:80494032-80494051 Msa0047540:intron 30.0%
! TTGAACTTTGGAAAGGTAAA+TGG + chr1_1:80494039-80494058 Msa0047540:intron 30.0%
! GGTAAATGGTTTTTCATTTC+AGG + chr1_1:80494053-80494072 Msa0047540:intron 30.0%
! CAGCTTTTGTAAATATCCTT+AGG - chr1_1:80494094-80494113 None:intergenic 30.0%
TGTGATTATGTTCATATGCA+TGG + chr1_1:80494175-80494194 Msa0047540:CDS 30.0%
TAATGAACTTAAGATTCAGG+CGG + chr1_1:80494241-80494260 Msa0047540:CDS 30.0%
AAGCAAGTAATAAGGAGAAT+TGG - chr1_1:80494449-80494468 None:intergenic 30.0%
TTTAATGTGTTTGACCTTGT+TGG + chr1_1:80494467-80494486 Msa0047540:CDS 30.0%
! CAATTTTTGCATTCTCTAGA+AGG - chr1_1:80494514-80494533 None:intergenic 30.0%
GAGAATGCAAAAATTGCAAT+CGG + chr1_1:80494518-80494537 Msa0047540:CDS 30.0%
AAATCATCAATACACTGGTA+AGG - chr1_1:80494667-80494686 None:intergenic 30.0%
AGCTAAAATCATCAATACAC+TGG - chr1_1:80494672-80494691 None:intergenic 30.0%
AGTGTGTTCTTCTTAGTTAT+TGG + chr1_1:80494737-80494756 Msa0047540:CDS 30.0%
!! CTCTATTATAGCTTGGTTTT+GGG + chr1_1:80494772-80494791 Msa0047540:CDS 30.0%
AAGGTAAGAGAAGTAATCAA+CGG - chr1_1:80493467-80493486 None:intergenic 30.0%
!!! GCAAATAGTTTTTTGTATGC+TGG + chr1_1:80493953-80493972 Msa0047540:intron 30.0%
!!! AGTTTTTTGTATGCTGGATT+TGG + chr1_1:80493959-80493978 Msa0047540:intron 30.0%
!!! GTTTTTTGTATGCTGGATTT+GGG + chr1_1:80493960-80493979 Msa0047540:intron 30.0%
! ATTGCTTGTTTCTTGAACTT+TGG + chr1_1:80494027-80494046 Msa0047540:intron 30.0%
! TTGTTTCTTGAACTTTGGAA+AGG + chr1_1:80494032-80494051 Msa0047540:intron 30.0%
! TTGAACTTTGGAAAGGTAAA+TGG + chr1_1:80494039-80494058 Msa0047540:intron 30.0%
! GGTAAATGGTTTTTCATTTC+AGG + chr1_1:80494053-80494072 Msa0047540:intron 30.0%
! CAGCTTTTGTAAATATCCTT+AGG - chr1_1:80494094-80494113 None:intergenic 30.0%
TGTGATTATGTTCATATGCA+TGG + chr1_1:80494175-80494194 Msa0047540:CDS 30.0%
TAATGAACTTAAGATTCAGG+CGG + chr1_1:80494241-80494260 Msa0047540:CDS 30.0%
AAGCAAGTAATAAGGAGAAT+TGG - chr1_1:80494449-80494468 None:intergenic 30.0%
TTTAATGTGTTTGACCTTGT+TGG + chr1_1:80494467-80494486 Msa0047540:CDS 30.0%
! CAATTTTTGCATTCTCTAGA+AGG - chr1_1:80494514-80494533 None:intergenic 30.0%
GAGAATGCAAAAATTGCAAT+CGG + chr1_1:80494518-80494537 Msa0047540:CDS 30.0%
AAATCATCAATACACTGGTA+AGG - chr1_1:80494667-80494686 None:intergenic 30.0%
AGCTAAAATCATCAATACAC+TGG - chr1_1:80494672-80494691 None:intergenic 30.0%
AGTGTGTTCTTCTTAGTTAT+TGG + chr1_1:80494737-80494756 Msa0047540:CDS 30.0%
!! CTCTATTATAGCTTGGTTTT+GGG + chr1_1:80494772-80494791 Msa0047540:CDS 30.0%
TGAAGGTAGAAGAAGAACAA+TGG - chr1_1:80493335-80493354 None:intergenic 35.0%
TTCTTCTACCTTCATGTTCA+AGG + chr1_1:80493341-80493360 Msa0047540:CDS 35.0%
AGAAAGTAGCAGAAGACAAA+TGG + chr1_1:80493371-80493390 Msa0047540:CDS 35.0%
TGCAAAGTAGAGCAAAGATA+CGG - chr1_1:80493510-80493529 None:intergenic 35.0%
CTTGATGTCGTGTATGTTAA+GGG + chr1_1:80493655-80493674 Msa0047540:CDS 35.0%
CACAACTTCAACCAAAAGTA+GGG - chr1_1:80493869-80493888 None:intergenic 35.0%
ACACAACTTCAACCAAAAGT+AGG - chr1_1:80493870-80493889 None:intergenic 35.0%
ATACCTTAGGAACAATCAAG+TGG + chr1_1:80494324-80494343 Msa0047540:CDS 35.0%
ATACCACTTGATTGTTCCTA+AGG - chr1_1:80494330-80494349 None:intergenic 35.0%
TTAGGAACAATCAAGTGGTA+TGG + chr1_1:80494329-80494348 Msa0047540:CDS 35.0%
TAGGAACAATCAAGTGGTAT+GGG + chr1_1:80494330-80494349 Msa0047540:CDS 35.0%
ACATCTTCTGTAATGTAACC+AGG - chr1_1:80494398-80494417 None:intergenic 35.0%
! AATCTTTAAGAAGCTGAGAG+TGG - chr1_1:80494421-80494440 None:intergenic 35.0%
ACTCTCAGCTTCTTAAAGAT+TGG + chr1_1:80494420-80494439 Msa0047540:CDS 35.0%
!! TTGTTTTTCCCTCTCTTCTT+AGG + chr1_1:80494560-80494579 Msa0047540:CDS 35.0%
ACACTATTAACGTGTCTCTT+AGG + chr1_1:80494626-80494645 Msa0047540:CDS 35.0%
CACTATTAACGTGTCTCTTA+GGG + chr1_1:80494627-80494646 Msa0047540:CDS 35.0%
GTTCTTCTTAGTTATTGGTC+TGG + chr1_1:80494742-80494761 Msa0047540:CDS 35.0%
! GCTCTATTATAGCTTGGTTT+TGG + chr1_1:80494771-80494790 Msa0047540:CDS 35.0%
TCCAAAACCTGCATATATTG+TGG + chr1_1:80494830-80494849 Msa0047540:three_prime_UTR 35.0%
ACTCAACTAGAAGTCAAAAC+TGG + chr1_1:80494857-80494876 Msa0047540:three_prime_UTR 35.0%
CTCAACTAGAAGTCAAAACT+GGG + chr1_1:80494858-80494877 Msa0047540:three_prime_UTR 35.0%
!! GGTTTCGTTAATTTGTTTCC+CGG + chr1_1:80494884-80494903 Msa0047540:three_prime_UTR 35.0%
TTACAAAGTTTACACGTGTC+CGG - chr1_1:80494906-80494925 None:intergenic 35.0%
TGAAGGTAGAAGAAGAACAA+TGG - chr1_1:80493335-80493354 None:intergenic 35.0%
TTCTTCTACCTTCATGTTCA+AGG + chr1_1:80493341-80493360 Msa0047540:CDS 35.0%
AGAAAGTAGCAGAAGACAAA+TGG + chr1_1:80493371-80493390 Msa0047540:CDS 35.0%
TGCAAAGTAGAGCAAAGATA+CGG - chr1_1:80493510-80493529 None:intergenic 35.0%
CTTGATGTCGTGTATGTTAA+GGG + chr1_1:80493655-80493674 Msa0047540:CDS 35.0%
CACAACTTCAACCAAAAGTA+GGG - chr1_1:80493869-80493888 None:intergenic 35.0%
ACACAACTTCAACCAAAAGT+AGG - chr1_1:80493870-80493889 None:intergenic 35.0%
ATACCTTAGGAACAATCAAG+TGG + chr1_1:80494324-80494343 Msa0047540:CDS 35.0%
ATACCACTTGATTGTTCCTA+AGG - chr1_1:80494330-80494349 None:intergenic 35.0%
TTAGGAACAATCAAGTGGTA+TGG + chr1_1:80494329-80494348 Msa0047540:CDS 35.0%
TAGGAACAATCAAGTGGTAT+GGG + chr1_1:80494330-80494349 Msa0047540:CDS 35.0%
ACATCTTCTGTAATGTAACC+AGG - chr1_1:80494398-80494417 None:intergenic 35.0%
! AATCTTTAAGAAGCTGAGAG+TGG - chr1_1:80494421-80494440 None:intergenic 35.0%
ACTCTCAGCTTCTTAAAGAT+TGG + chr1_1:80494420-80494439 Msa0047540:CDS 35.0%
!! TTGTTTTTCCCTCTCTTCTT+AGG + chr1_1:80494560-80494579 Msa0047540:CDS 35.0%
ACACTATTAACGTGTCTCTT+AGG + chr1_1:80494626-80494645 Msa0047540:CDS 35.0%
CACTATTAACGTGTCTCTTA+GGG + chr1_1:80494627-80494646 Msa0047540:CDS 35.0%
GTTCTTCTTAGTTATTGGTC+TGG + chr1_1:80494742-80494761 Msa0047540:CDS 35.0%
! GCTCTATTATAGCTTGGTTT+TGG + chr1_1:80494771-80494790 Msa0047540:CDS 35.0%
TCCAAAACCTGCATATATTG+TGG + chr1_1:80494830-80494849 Msa0047540:three_prime_UTR 35.0%
ACTCAACTAGAAGTCAAAAC+TGG + chr1_1:80494857-80494876 Msa0047540:three_prime_UTR 35.0%
CTCAACTAGAAGTCAAAACT+GGG + chr1_1:80494858-80494877 Msa0047540:three_prime_UTR 35.0%
!! GGTTTCGTTAATTTGTTTCC+CGG + chr1_1:80494884-80494903 Msa0047540:three_prime_UTR 35.0%
TTACAAAGTTTACACGTGTC+CGG - chr1_1:80494906-80494925 None:intergenic 35.0%
AGGTAGAAGAAGAACAATGG+TGG - chr1_1:80493332-80493351 None:intergenic 40.0%
TTTGTCGTCCTTGAACATGA+AGG - chr1_1:80493352-80493371 None:intergenic 40.0%
ATCTACTTCACACTTGGCAT+CGG + chr1_1:80493409-80493428 Msa0047540:CDS 40.0%
!! AATGAGATTTGTGTCGGTTG+AGG - chr1_1:80493573-80493592 None:intergenic 40.0%
ACATACACGACATCAAGCAA+GGG - chr1_1:80493652-80493671 None:intergenic 40.0%
AACATACACGACATCAAGCA+AGG - chr1_1:80493653-80493672 None:intergenic 40.0%
GCTTGATGTCGTGTATGTTA+AGG + chr1_1:80493654-80493673 Msa0047540:CDS 40.0%
! ATGCTGGATTTGGGTTTGAA+TGG + chr1_1:80493969-80493988 Msa0047540:intron 40.0%
! AGAGATTAGCACTCTTTTGC+AGG - chr1_1:80494139-80494158 None:intergenic 40.0%
TGTCTGGAGATCAACTGTAT+GGG + chr1_1:80494301-80494320 Msa0047540:CDS 40.0%
TCAACTGTATGGGATACCTT+AGG + chr1_1:80494311-80494330 Msa0047540:CDS 40.0%
ATCTCTGTCCGGAAGAATTT+CGG - chr1_1:80494599-80494618 None:intergenic 40.0%
AGACACGTTAATAGTGTCAC+AGG - chr1_1:80494623-80494642 None:intergenic 40.0%
TGTCTCTTAGGGCTTACAAA+TGG + chr1_1:80494638-80494657 Msa0047540:CDS 40.0%
! GCCACAATATATGCAGGTTT+TGG - chr1_1:80494834-80494853 None:intergenic 40.0%
AGTGAAGCCACAATATATGC+AGG - chr1_1:80494840-80494859 None:intergenic 40.0%
CTAGAAGTCAAAACTGGGAT+TGG + chr1_1:80494863-80494882 Msa0047540:three_prime_UTR 40.0%
TACAAAGTTTACACGTGTCC+GGG - chr1_1:80494905-80494924 None:intergenic 40.0%
! CACTTTTACAAGCACCATGT+TGG + chr1_1:80494984-80495003 Msa0047540:three_prime_UTR 40.0%
GTGGATTCTGTTTGTGACAT+GGG - chr1_1:80493313-80493332 None:intergenic 40.0%
AGGTAGAAGAAGAACAATGG+TGG - chr1_1:80493332-80493351 None:intergenic 40.0%
TTTGTCGTCCTTGAACATGA+AGG - chr1_1:80493352-80493371 None:intergenic 40.0%
ATCTACTTCACACTTGGCAT+CGG + chr1_1:80493409-80493428 Msa0047540:CDS 40.0%
!! AATGAGATTTGTGTCGGTTG+AGG - chr1_1:80493573-80493592 None:intergenic 40.0%
ACATACACGACATCAAGCAA+GGG - chr1_1:80493652-80493671 None:intergenic 40.0%
AACATACACGACATCAAGCA+AGG - chr1_1:80493653-80493672 None:intergenic 40.0%
GCTTGATGTCGTGTATGTTA+AGG + chr1_1:80493654-80493673 Msa0047540:CDS 40.0%
! ATGCTGGATTTGGGTTTGAA+TGG + chr1_1:80493969-80493988 Msa0047540:intron 40.0%
! AGAGATTAGCACTCTTTTGC+AGG - chr1_1:80494139-80494158 None:intergenic 40.0%
TGTCTGGAGATCAACTGTAT+GGG + chr1_1:80494301-80494320 Msa0047540:CDS 40.0%
TCAACTGTATGGGATACCTT+AGG + chr1_1:80494311-80494330 Msa0047540:CDS 40.0%
ATCTCTGTCCGGAAGAATTT+CGG - chr1_1:80494599-80494618 None:intergenic 40.0%
AGACACGTTAATAGTGTCAC+AGG - chr1_1:80494623-80494642 None:intergenic 40.0%
TGTCTCTTAGGGCTTACAAA+TGG + chr1_1:80494638-80494657 Msa0047540:CDS 40.0%
! GCCACAATATATGCAGGTTT+TGG - chr1_1:80494834-80494853 None:intergenic 40.0%
AGTGAAGCCACAATATATGC+AGG - chr1_1:80494840-80494859 None:intergenic 40.0%
CTAGAAGTCAAAACTGGGAT+TGG + chr1_1:80494863-80494882 Msa0047540:three_prime_UTR 40.0%
TACAAAGTTTACACGTGTCC+GGG - chr1_1:80494905-80494924 None:intergenic 40.0%
! CACTTTTACAAGCACCATGT+TGG + chr1_1:80494984-80495003 Msa0047540:three_prime_UTR 40.0%
CTGTGATGAATGCGTTCCAT+GGG - chr1_1:80493444-80493463 None:intergenic 45.0%
! GGTTGAGGATGATGATGATG+AGG - chr1_1:80493558-80493577 None:intergenic 45.0%
CGTGGGAATGAGATTTGTGT+CGG - chr1_1:80493579-80493598 None:intergenic 45.0%
ACAAATCTCATTCCCACGTG+AGG + chr1_1:80493581-80493600 Msa0047540:CDS 45.0%
AAGCAAGGGAACTATGAGGA+GGG - chr1_1:80493638-80493657 None:intergenic 45.0%
CATCAAGCAAGGGAACTATG+AGG - chr1_1:80493642-80493661 None:intergenic 45.0%
GTGTATGTTAAGGGTCGAGT+CGG + chr1_1:80493664-80493683 Msa0047540:CDS 45.0%
TGTATGTTAAGGGTCGAGTC+GGG + chr1_1:80493665-80493684 Msa0047540:CDS 45.0%
TTCAGGTGTGGCTAATGCTT+TGG + chr1_1:80493729-80493748 Msa0047540:CDS 45.0%
TTGGTGCAGGGATCTATTCT+TGG + chr1_1:80493748-80493767 Msa0047540:CDS 45.0%
! GGGTGCTTGTTTCTTTCCTA+AGG + chr1_1:80494075-80494094 Msa0047540:CDS 45.0%
AGGACCATTGTCGTCTTCAA+CGG - chr1_1:80494270-80494289 None:intergenic 45.0%
GTCCTTTGACAGTATCTGTC+TGG + chr1_1:80494285-80494304 Msa0047540:CDS 45.0%
CTCCAGACAGATACTGTCAA+AGG - chr1_1:80494290-80494309 None:intergenic 45.0%
CTGTCTGGAGATCAACTGTA+TGG + chr1_1:80494300-80494319 Msa0047540:CDS 45.0%
ACAATCAAGTGGTATGGGCT+CGG + chr1_1:80494335-80494354 Msa0047540:CDS 45.0%
GTGACGCTTGCAATATTTCC+TGG + chr1_1:80494377-80494396 Msa0047540:CDS 45.0%
! CTAGAAGGTATACTGCAGTG+AGG - chr1_1:80494499-80494518 None:intergenic 45.0%
GCAAGCATCCTAAGAAGAGA+GGG - chr1_1:80494571-80494590 None:intergenic 45.0%
TGCAAGCATCCTAAGAAGAG+AGG - chr1_1:80494572-80494591 None:intergenic 45.0%
CTCTTCTTAGGATGCTTGCA+CGG + chr1_1:80494572-80494591 Msa0047540:CDS 45.0%
! TGCTGCAACTTCACGGTTTT+AGG - chr1_1:80494695-80494714 None:intergenic 45.0%
! TTAGTTATTGGTCTGGCTGC+TGG + chr1_1:80494749-80494768 Msa0047540:CDS 45.0%
!! CTGCTGGCTCTATTATAGCT+TGG + chr1_1:80494765-80494784 Msa0047540:CDS 45.0%
! GGTGGATTCTGTTTGTGACA+TGG - chr1_1:80493314-80493333 None:intergenic 45.0%
CTGTGATGAATGCGTTCCAT+GGG - chr1_1:80493444-80493463 None:intergenic 45.0%
! GGTTGAGGATGATGATGATG+AGG - chr1_1:80493558-80493577 None:intergenic 45.0%
CGTGGGAATGAGATTTGTGT+CGG - chr1_1:80493579-80493598 None:intergenic 45.0%
ACAAATCTCATTCCCACGTG+AGG + chr1_1:80493581-80493600 Msa0047540:CDS 45.0%
AAGCAAGGGAACTATGAGGA+GGG - chr1_1:80493638-80493657 None:intergenic 45.0%
CATCAAGCAAGGGAACTATG+AGG - chr1_1:80493642-80493661 None:intergenic 45.0%
GTGTATGTTAAGGGTCGAGT+CGG + chr1_1:80493664-80493683 Msa0047540:CDS 45.0%
TGTATGTTAAGGGTCGAGTC+GGG + chr1_1:80493665-80493684 Msa0047540:CDS 45.0%
TTCAGGTGTGGCTAATGCTT+TGG + chr1_1:80493729-80493748 Msa0047540:CDS 45.0%
TTGGTGCAGGGATCTATTCT+TGG + chr1_1:80493748-80493767 Msa0047540:CDS 45.0%
! GGGTGCTTGTTTCTTTCCTA+AGG + chr1_1:80494075-80494094 Msa0047540:CDS 45.0%
AGGACCATTGTCGTCTTCAA+CGG - chr1_1:80494270-80494289 None:intergenic 45.0%
GTCCTTTGACAGTATCTGTC+TGG + chr1_1:80494285-80494304 Msa0047540:CDS 45.0%
CTCCAGACAGATACTGTCAA+AGG - chr1_1:80494290-80494309 None:intergenic 45.0%
CTGTCTGGAGATCAACTGTA+TGG + chr1_1:80494300-80494319 Msa0047540:CDS 45.0%
ACAATCAAGTGGTATGGGCT+CGG + chr1_1:80494335-80494354 Msa0047540:CDS 45.0%
GTGACGCTTGCAATATTTCC+TGG + chr1_1:80494377-80494396 Msa0047540:CDS 45.0%
! CTAGAAGGTATACTGCAGTG+AGG - chr1_1:80494499-80494518 None:intergenic 45.0%
GCAAGCATCCTAAGAAGAGA+GGG - chr1_1:80494571-80494590 None:intergenic 45.0%
TGCAAGCATCCTAAGAAGAG+AGG - chr1_1:80494572-80494591 None:intergenic 45.0%
CTCTTCTTAGGATGCTTGCA+CGG + chr1_1:80494572-80494591 Msa0047540:CDS 45.0%
! TGCTGCAACTTCACGGTTTT+AGG - chr1_1:80494695-80494714 None:intergenic 45.0%
! TTAGTTATTGGTCTGGCTGC+TGG + chr1_1:80494749-80494768 Msa0047540:CDS 45.0%
!! CTGCTGGCTCTATTATAGCT+TGG + chr1_1:80494765-80494784 Msa0047540:CDS 45.0%
!! GCATCGGCTATTTGTTCCCA+TGG + chr1_1:80493425-80493444 Msa0047540:CDS 50.0%
GCTGTGATGAATGCGTTCCA+TGG - chr1_1:80493445-80493464 None:intergenic 50.0%
ATACGGTCAACGCTTGCATC+GGG - chr1_1:80493493-80493512 None:intergenic 50.0%
GATACGGTCAACGCTTGCAT+CGG - chr1_1:80493494-80493513 None:intergenic 50.0%
TCCAACGTTGATCCTCACGT+GGG - chr1_1:80493596-80493615 None:intergenic 50.0%
ATCCAACGTTGATCCTCACG+TGG - chr1_1:80493597-80493616 None:intergenic 50.0%
CAAGCAAGGGAACTATGAGG+AGG - chr1_1:80493639-80493658 None:intergenic 50.0%
! GGTCGAGTCGGGTTGTATAA+CGG + chr1_1:80493676-80493695 Msa0047540:CDS 50.0%
! GTCGAGTCGGGTTGTATAAC+GGG + chr1_1:80493677-80493696 Msa0047540:CDS 50.0%
!! AACGGGTTTTACGTCACTGC+TGG + chr1_1:80493694-80493713 Msa0047540:CDS 50.0%
! ACGGGTTTTACGTCACTGCT+GGG + chr1_1:80493695-80493714 Msa0047540:CDS 50.0%
! TGTGGCTAATGCTTTGGTGC+AGG + chr1_1:80493735-80493754 Msa0047540:CDS 50.0%
! GTGGCTAATGCTTTGGTGCA+GGG + chr1_1:80493736-80493755 Msa0047540:CDS 50.0%
GTTTACACGCAAGATGCCTC+TGG + chr1_1:80494113-80494132 Msa0047540:CDS 50.0%
ACCATTGTCGTCTTCAACGG+CGG - chr1_1:80494267-80494286 None:intergenic 50.0%
! CAGTGAGGCTTTTGCCAACA+AGG - chr1_1:80494484-80494503 None:intergenic 50.0%
TGCACGGTCCGAAATTCTTC+CGG + chr1_1:80494588-80494607 Msa0047540:CDS 50.0%
GTGTCACAGGAATCTCTGTC+CGG - chr1_1:80494610-80494629 None:intergenic 50.0%
CTCTGCATGCTGCAACTTCA+CGG - chr1_1:80494702-80494721 None:intergenic 50.0%
!!! TGGTTTTGGGTCATCTGACC+AGG + chr1_1:80494785-80494804 Msa0047540:exon 50.0%
!! GCATCGGCTATTTGTTCCCA+TGG + chr1_1:80493425-80493444 Msa0047540:CDS 50.0%
GCTGTGATGAATGCGTTCCA+TGG - chr1_1:80493445-80493464 None:intergenic 50.0%
ATACGGTCAACGCTTGCATC+GGG - chr1_1:80493493-80493512 None:intergenic 50.0%
GATACGGTCAACGCTTGCAT+CGG - chr1_1:80493494-80493513 None:intergenic 50.0%
TCCAACGTTGATCCTCACGT+GGG - chr1_1:80493596-80493615 None:intergenic 50.0%
ATCCAACGTTGATCCTCACG+TGG - chr1_1:80493597-80493616 None:intergenic 50.0%
CAAGCAAGGGAACTATGAGG+AGG - chr1_1:80493639-80493658 None:intergenic 50.0%
! GGTCGAGTCGGGTTGTATAA+CGG + chr1_1:80493676-80493695 Msa0047540:CDS 50.0%
! GTCGAGTCGGGTTGTATAAC+GGG + chr1_1:80493677-80493696 Msa0047540:CDS 50.0%
!! AACGGGTTTTACGTCACTGC+TGG + chr1_1:80493694-80493713 Msa0047540:CDS 50.0%
! ACGGGTTTTACGTCACTGCT+GGG + chr1_1:80493695-80493714 Msa0047540:CDS 50.0%
! TGTGGCTAATGCTTTGGTGC+AGG + chr1_1:80493735-80493754 Msa0047540:CDS 50.0%
! GTGGCTAATGCTTTGGTGCA+GGG + chr1_1:80493736-80493755 Msa0047540:CDS 50.0%
GTTTACACGCAAGATGCCTC+TGG + chr1_1:80494113-80494132 Msa0047540:CDS 50.0%
ACCATTGTCGTCTTCAACGG+CGG - chr1_1:80494267-80494286 None:intergenic 50.0%
! CAGTGAGGCTTTTGCCAACA+AGG - chr1_1:80494484-80494503 None:intergenic 50.0%
TGCACGGTCCGAAATTCTTC+CGG + chr1_1:80494588-80494607 Msa0047540:CDS 50.0%
GTGTCACAGGAATCTCTGTC+CGG - chr1_1:80494610-80494629 None:intergenic 50.0%
CTCTGCATGCTGCAACTTCA+CGG - chr1_1:80494702-80494721 None:intergenic 50.0%
!!! TGGTTTTGGGTCATCTGACC+AGG + chr1_1:80494785-80494804 Msa0047540:exon 50.0%
CAACGCTTGCATCGGGGTAA+AGG - chr1_1:80493486-80493505 None:intergenic 55.0%
TACGGTCAACGCTTGCATCG+GGG - chr1_1:80493492-80493511 None:intergenic 55.0%
TCCCACGTGAGGATCAACGT+TGG + chr1_1:80493592-80493611 Msa0047540:CDS 55.0%
! CGGGTTTTACGTCACTGCTG+GGG + chr1_1:80493696-80493715 Msa0047540:CDS 55.0%
! GGCTGTTGGGATTTCAGGTG+TGG + chr1_1:80493717-80493736 Msa0047540:CDS 55.0%
GGATCTATTCTTGGCTCCGC+TGG + chr1_1:80493757-80493776 Msa0047540:CDS 55.0%
! AGCACTCTTTTGCAGGCCAG+AGG - chr1_1:80494132-80494151 None:intergenic 55.0%
GTTGCAGCATGCAGAGACTG+CGG + chr1_1:80494706-80494725 Msa0047540:CDS 55.0%
TTGCAGCATGCAGAGACTGC+GGG + chr1_1:80494707-80494726 Msa0047540:CDS 55.0%
CAACGCTTGCATCGGGGTAA+AGG - chr1_1:80493486-80493505 None:intergenic 55.0%
TACGGTCAACGCTTGCATCG+GGG - chr1_1:80493492-80493511 None:intergenic 55.0%
TCCCACGTGAGGATCAACGT+TGG + chr1_1:80493592-80493611 Msa0047540:CDS 55.0%
! CGGGTTTTACGTCACTGCTG+GGG + chr1_1:80493696-80493715 Msa0047540:CDS 55.0%
! GGCTGTTGGGATTTCAGGTG+TGG + chr1_1:80493717-80493736 Msa0047540:CDS 55.0%
GGATCTATTCTTGGCTCCGC+TGG + chr1_1:80493757-80493776 Msa0047540:CDS 55.0%
! AGCACTCTTTTGCAGGCCAG+AGG - chr1_1:80494132-80494151 None:intergenic 55.0%
GTTGCAGCATGCAGAGACTG+CGG + chr1_1:80494706-80494725 Msa0047540:CDS 55.0%
TTGCAGCATGCAGAGACTGC+GGG + chr1_1:80494707-80494726 Msa0047540:CDS 55.0%
TACGTCACTGCTGGGGCTGT+TGG + chr1_1:80493703-80493722 Msa0047540:CDS 60.0%
ACGTCACTGCTGGGGCTGTT+GGG + chr1_1:80493704-80493723 Msa0047540:CDS 60.0%
GCTGGGGCTGTTGGGATTTC+AGG + chr1_1:80493712-80493731 Msa0047540:CDS 60.0%
TACACGCAGGCGGTCATTGC+TGG + chr1_1:80493796-80493815 Msa0047540:CDS 60.0%
ACACGCAGGCGGTCATTGCT+GGG + chr1_1:80493797-80493816 Msa0047540:CDS 60.0%
!! ATTGCTGGGGGTGCTGCTTC+TGG + chr1_1:80493811-80493830 Msa0047540:CDS 60.0%
GCCGCCGTTGAAGACGACAA+TGG + chr1_1:80494263-80494282 Msa0047540:CDS 60.0%
TGCAGCATGCAGAGACTGCG+GGG + chr1_1:80494708-80494727 Msa0047540:CDS 60.0%
TACGTCACTGCTGGGGCTGT+TGG + chr1_1:80493703-80493722 Msa0047540:CDS 60.0%
ACGTCACTGCTGGGGCTGTT+GGG + chr1_1:80493704-80493723 Msa0047540:CDS 60.0%
GCTGGGGCTGTTGGGATTTC+AGG + chr1_1:80493712-80493731 Msa0047540:CDS 60.0%
TACACGCAGGCGGTCATTGC+TGG + chr1_1:80493796-80493815 Msa0047540:CDS 60.0%
ACACGCAGGCGGTCATTGCT+GGG + chr1_1:80493797-80493816 Msa0047540:CDS 60.0%
!! ATTGCTGGGGGTGCTGCTTC+TGG + chr1_1:80493811-80493830 Msa0047540:CDS 60.0%
GCCGCCGTTGAAGACGACAA+TGG + chr1_1:80494263-80494282 Msa0047540:CDS 60.0%
TGCAGCATGCAGAGACTGCG+GGG + chr1_1:80494708-80494727 Msa0047540:CDS 60.0%
TGGCTCCGCTGGTGAGTTGC+CGG + chr1_1:80493768-80493787 Msa0047540:CDS 65.0%
CCTCTCCGGCAACTCACCAG+CGG - chr1_1:80493776-80493795 None:intergenic 65.0%
! GTTGCCGGAGAGGTACACGC+AGG + chr1_1:80493783-80493802 Msa0047540:CDS 65.0%
ACCGCCTGCGTGTACCTCTC+CGG - chr1_1:80493790-80493809 None:intergenic 65.0%
CACGCAGGCGGTCATTGCTG+GGG + chr1_1:80493798-80493817 Msa0047540:CDS 65.0%
ACGCAGGCGGTCATTGCTGG+GGG + chr1_1:80493799-80493818 Msa0047540:CDS 65.0%
TGGCTCCGCTGGTGAGTTGC+CGG + chr1_1:80493768-80493787 Msa0047540:CDS 65.0%
CCTCTCCGGCAACTCACCAG+CGG - chr1_1:80493776-80493795 None:intergenic 65.0%
! GTTGCCGGAGAGGTACACGC+AGG + chr1_1:80493783-80493802 Msa0047540:CDS 65.0%
ACCGCCTGCGTGTACCTCTC+CGG - chr1_1:80493790-80493809 None:intergenic 65.0%
CACGCAGGCGGTCATTGCTG+GGG + chr1_1:80493798-80493817 Msa0047540:CDS 65.0%
ACGCAGGCGGTCATTGCTGG+GGG + chr1_1:80493799-80493818 Msa0047540:CDS 65.0%
CCGCTGGTGAGTTGCCGGAG+AGG + chr1_1:80493773-80493792 Msa0047540:CDS 70.0%
! GCCGGAGAGGTACACGCAGG+CGG + chr1_1:80493786-80493805 Msa0047540:CDS 70.0%
CCGCTGGTGAGTTGCCGGAG+AGG + chr1_1:80493773-80493792 Msa0047540:CDS 70.0%
! GCCGGAGAGGTACACGCAGG+CGG + chr1_1:80493786-80493805 Msa0047540:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 80493313 80495010 80493313 ID=Msa0047540;Name=Msa0047540
chr1_1 mRNA 80493313 80495010 80493313 ID=Msa0047540-mRNA-1;Parent=Msa0047540;Name=Msa0047540-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0.5|1|1|1|2|208|415
chr1_1 exon 80493313 80493832 80493313 ID=Msa0047540-mRNA-1:exon:27800;Parent=Msa0047540-mRNA-1
chr1_1 exon 80494075 80495010 80494075 ID=Msa0047540-mRNA-1:exon:27801;Parent=Msa0047540-mRNA-1
chr1_1 CDS 80493313 80493832 80493313 ID=Msa0047540-mRNA-1:cds;Parent=Msa0047540-mRNA-1
chr1_1 CDS 80494075 80494802 80494075 ID=Msa0047540-mRNA-1:cds;Parent=Msa0047540-mRNA-1
chr1_1 three_prime_UTR 80494803 80495010 80494803 ID=Msa0047540-mRNA-1:three_prime_utr;Parent=Msa0047540-mRNA-1
Gene Sequence

>Msa0047540

ATGTCACAAACAGAATCCACCATTGTTCTTCTTCTACCTTCATGTTCAAGGACGACAAAGAAAGTAGCAGAAGACAAATGGCACTTAGCATATATAATCTACTTCACACTTGGCATCGGCTATTTGTTCCCATGGAACGCATTCATCACAGCCGTTGATTACTTCTCTTACCTTTACCCCGATGCAAGCGTTGACCGTATCTTTGCTCTACTTTGCACGCTTGTTAGTCTTGTTACTCTCTTCCTCATCATCATCATCCTCAACCGACACAAATCTCATTCCCACGTGAGGATCAACGTTGGATTAGCACTGTTTGTTGTTTCCCTCCTCATAGTTCCCTTGCTTGATGTCGTGTATGTTAAGGGTCGAGTCGGGTTGTATAACGGGTTTTACGTCACTGCTGGGGCTGTTGGGATTTCAGGTGTGGCTAATGCTTTGGTGCAGGGATCTATTCTTGGCTCCGCTGGTGAGTTGCCGGAGAGGTACACGCAGGCGGTCATTGCTGGGGGTGCTGCTTCTGGGGTGCTTGTTTCTTTCCTAAGGATATTTACAAAAGCTGTTTACACGCAAGATGCCTCTGGCCTGCAAAAGAGTGCTAATCTCTACTTTGCTGTATCAATTGTGATTATGTTCATATGCATGGTTTTATACAATCTAGCTCACAAACTTCCCATTATAAAGTACTATAATGAACTTAAGATTCAGGCGGCCGCCGTTGAAGACGACAATGGTCCTTTGACAGTATCTGTCTGGAGATCAACTGTATGGGATACCTTAGGAACAATCAAGTGGTATGGGCTCGGCATCATGCTCATTTATGTTGTGACGCTTGCAATATTTCCTGGTTACATTACAGAAGATGTCCACTCTCAGCTTCTTAAAGATTGGTATCCAATTCTCCTTATTACTTGCTTTAATGTGTTTGACCTTGTTGGCAAAAGCCTCACTGCAGTATACCTTCTAGAGAATGCAAAAATTGCAATCGGTTGTTGCATAGCAAGACTGTTGTTTTTCCCTCTCTTCTTAGGATGCTTGCACGGTCCGAAATTCTTCCGGACAGAGATTCCTGTGACACTATTAACGTGTCTCTTAGGGCTTACAAATGGATACCTTACCAGTGTATTGATGATTTTAGCTCCTAAAACCGTGAAGTTGCAGCATGCAGAGACTGCGGGGATTGTGAGTGTGTTCTTCTTAGTTATTGGTCTGGCTGCTGGCTCTATTATAGCTTGGTTTTGGGTCATCTGA
Protein sequence

>Msa0047540

MSQTESTIVLLLPSCSRTTKKVAEDKWHLAYIIYFTLGIGYLFPWNAFITAVDYFSYLYPDASVDRIFALLCTLVSLVTLFLIIIILNRHKSHSHVRINVGLALFVVSLLIVPLLDVVYVKGRVGLYNGFYVTAGAVGISGVANALVQGSILGSAGELPERYTQAVIAGGAASGVLVSFLRIFTKAVYTQDASGLQKSANLYFAVSIVIMFICMVLYNLAHKLPIIKYYNELKIQAAAVEDDNGPLTVSVWRSTVWDTLGTIKWYGLGIMLIYVVTLAIFPGYITEDVHSQLLKDWYPILLITCFNVFDLVGKSLTAVYLLENAKIAIGCCIARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKTVKLQHAETAGIVSVFFLVIGLAAGSIIAWFWVI*