Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0048940 | KEH40424.1 | 76.289 | 582 | 97 | 9 | 1 | 542 | 1 | 581 | 0.0 | 781 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0048940 | A0A072VEK3 | 76.289 | 582 | 97 | 9 | 1 | 542 | 1 | 581 | 0.0 | 781 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0048940 | Msa0059740 | 0.843349 | 1.479672e-58 | -8.615850e-47 |
| Msa0048940 | Msa0512870 | 0.801981 | 6.966303e-49 | -8.615850e-47 |
| Msa0048940 | Msa0574390 | 0.810503 | 1.115784e-50 | -8.615850e-47 |
| Msa0048940 | Msa0944660 | 0.812448 | 4.218698e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0048940 | MtrunA17_Chr1g0159011 | 76.289 | 582 | 97 | 9 | 1 | 542 | 25 | 605 | 0.0 | 780 |
| Msa0048940 | MtrunA17_Chr1g0159151 | 52.495 | 541 | 174 | 16 | 1 | 484 | 1 | 515 | 4.00e-125 | 377 |
| Msa0048940 | MtrunA17_Chr1g0159081 | 49.296 | 213 | 69 | 8 | 222 | 427 | 2 | 182 | 1.62e-33 | 125 |
| Msa0048940 | MtrunA17_Chr1g0159081 | 41.117 | 197 | 79 | 6 | 38 | 213 | 2 | 182 | 3.89e-20 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0048940 | AT5G53220.5 | 37.327 | 217 | 126 | 4 | 330 | 542 | 152 | 362 | 1.44e-20 | 94.0 |
| Msa0048940 | AT5G53220.3 | 37.327 | 217 | 126 | 4 | 330 | 542 | 152 | 362 | 1.44e-20 | 94.0 |
| Msa0048940 | AT5G53220.2 | 37.327 | 217 | 126 | 4 | 330 | 542 | 152 | 362 | 1.44e-20 | 94.0 |
| Msa0048940 | AT5G53220.4 | 37.327 | 217 | 126 | 4 | 330 | 542 | 152 | 362 | 1.44e-20 | 94.0 |
| Msa0048940 | AT5G53220.6 | 37.327 | 217 | 126 | 4 | 330 | 542 | 152 | 362 | 1.44e-20 | 94.0 |
| Msa0048940 | AT5G53220.1 | 37.327 | 217 | 126 | 4 | 330 | 542 | 152 | 362 | 1.44e-20 | 94.0 |
| Msa0048940 | AT5G53220.7 | 37.327 | 217 | 126 | 4 | 330 | 542 | 152 | 362 | 1.44e-20 | 94.0 |
Find 91 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGTTCTTTCCTTCTTCTT+TGG | 0.167172 | 1_2:-2040379 | None:intergenic |
| CCAAAACAATGAAGAAAATT+TGG | 0.207616 | 1_2:+2040416 | Msa0048940:CDS |
| TTCCTTATAAGTTTACTAAT+TGG | 0.230321 | 1_2:-2041092 | None:intergenic |
| AGTAAGGAAAATTCTGATTT+AGG | 0.238486 | 1_2:+2040975 | Msa0048940:CDS |
| CTGCAAATTTCAACTCCTTC+GGG | 0.292903 | 1_2:-2042989 | None:intergenic |
| TGCCAATTAGTAAACTTATA+AGG | 0.299713 | 1_2:+2041090 | Msa0048940:CDS |
| TGTGGTAGTCAAGGGAAATT+TGG | 0.329725 | 1_2:-2043070 | None:intergenic |
| TTCTTTATAACCTGACTAAT+CGG | 0.339707 | 1_2:-2041197 | None:intergenic |
| ATTGCAAGGCCGTTTCCTTT+TGG | 0.341522 | 1_2:-2040472 | None:intergenic |
| ATCTTGCGAGCTACTTGAAT+TGG | 0.341748 | 1_2:-2040823 | None:intergenic |
| TTTCTCAGAGGCTGTACTTT+GGG | 0.347215 | 1_2:+2042896 | Msa0048940:intron |
| CAGGATGATAAAACGTCTTC+AGG | 0.357356 | 1_2:+2040630 | Msa0048940:CDS |
| TCTGCAAATTTCAACTCCTT+CGG | 0.360255 | 1_2:-2042990 | None:intergenic |
| ATCCGATACGTCCTGTGAAT+CGG | 0.380199 | 1_2:-2041511 | None:intergenic |
| TCCGATACGTCCTGTGAATC+GGG | 0.386047 | 1_2:-2041510 | None:intergenic |
| GGACAAGTCTAATAGTGATT+TGG | 0.391336 | 1_2:+2040797 | Msa0048940:CDS |
| AATGAAGAAAATTTGGACTT+TGG | 0.391567 | 1_2:+2040423 | Msa0048940:CDS |
| CTCACAAAATTTCACTAGAT+AGG | 0.393139 | 1_2:+2040319 | Msa0048940:CDS |
| CTTCTCAAAATGATAAGAAA+TGG | 0.403459 | 1_2:+2043104 | Msa0048940:three_prime_UTR |
| GTCAGGTTATAAAGAAGAAA+AGG | 0.421340 | 1_2:+2041204 | Msa0048940:CDS |
| CTTTATCGACAGCAAATGCT+TGG | 0.431929 | 1_2:+2041669 | Msa0048940:CDS |
| CTCAGAGGCTGTACTTTGGG+AGG | 0.449009 | 1_2:+2042899 | Msa0048940:intron |
| TTATGATACTTGATCTTATG+AGG | 0.452680 | 1_2:-2040657 | None:intergenic |
| AACATGTACGGTAGCAGAAA+GGG | 0.457775 | 1_2:+2040920 | Msa0048940:CDS |
| CGGGAATCCTTGTTACGATC+TGG | 0.458656 | 1_2:-2041491 | None:intergenic |
| TCATGAGCATCATCATTTGT+TGG | 0.473135 | 1_2:-2041305 | None:intergenic |
| ATTTCTCAGAGGCTGTACTT+TGG | 0.475823 | 1_2:+2042895 | Msa0048940:intron |
| AGGAAACATTTGGCCGTGAC+GGG | 0.476824 | 1_2:+2041705 | Msa0048940:CDS |
| ACATTTGGCCGTGACGGGCG+TGG | 0.479632 | 1_2:+2041710 | Msa0048940:CDS |
| TGATGATATGCCGATTAGTC+AGG | 0.484729 | 1_2:+2041187 | Msa0048940:CDS |
| ATGTGCAAGATGTATCTGAT+AGG | 0.485167 | 1_2:+2040871 | Msa0048940:CDS |
| AAAGAAAACTGTGGAGGAGT+TGG | 0.490542 | 1_2:+2042955 | Msa0048940:CDS |
| TCAGAGGCTGTACTTTGGGA+GGG | 0.491157 | 1_2:+2042900 | Msa0048940:intron |
| TTTATCGACAGCAAATGCTT+GGG | 0.497290 | 1_2:+2041670 | Msa0048940:CDS |
| AACAAGGATTCCCGATTCAC+AGG | 0.500908 | 1_2:+2041500 | Msa0048940:CDS |
| ATCTGTTGCTGTGGTAGTCA+AGG | 0.503019 | 1_2:-2043079 | None:intergenic |
| CAATTATGCTCAAAAGAGTA+AGG | 0.504524 | 1_2:+2040959 | Msa0048940:CDS |
| CAGATGTATGAGGAAACATT+TGG | 0.507685 | 1_2:+2041695 | Msa0048940:CDS |
| TCCCGATTCACAGGACGTAT+CGG | 0.508463 | 1_2:+2041509 | Msa0048940:CDS |
| CAACATGTACGGTAGCAGAA+AGG | 0.513020 | 1_2:+2040919 | Msa0048940:CDS |
| CATGTGCTGTAATTCCGAAA+AGG | 0.513552 | 1_2:+2041009 | Msa0048940:CDS |
| TATTTGCTGCAAATACCAAA+AGG | 0.524727 | 1_2:+2040457 | Msa0048940:CDS |
| TGCTAAATCCACGCCCGTCA+CGG | 0.529350 | 1_2:-2041718 | None:intergenic |
| AAGAACTTGGACAACAATCA+TGG | 0.534690 | 1_2:+2040393 | Msa0048940:CDS |
| CAAAGAAGAAGGAAAGAACT+TGG | 0.535289 | 1_2:+2040380 | Msa0048940:CDS |
| GAGGAAACATTTGGCCGTGA+CGG | 0.554171 | 1_2:+2041704 | Msa0048940:CDS |
| GTATCTGATAGGCAAGGTAG+TGG | 0.560203 | 1_2:+2040882 | Msa0048940:CDS |
| ACTTATAAGGAAGGATGTTG+AGG | 0.567746 | 1_2:+2041103 | Msa0048940:CDS |
| AAACATTAGCACATTAGTAA+TGG | 0.568851 | 1_2:+2043149 | Msa0048940:three_prime_UTR |
| CTGCAAATACCAAAAGGAAA+CGG | 0.569805 | 1_2:+2040463 | Msa0048940:CDS |
| AATTAGTAAACTTATAAGGA+AGG | 0.570273 | 1_2:+2041094 | Msa0048940:CDS |
| TTAGCAAGTATGATGCTGCC+AGG | 0.578186 | 1_2:+2041735 | Msa0048940:CDS |
| GGATGCAGTGTTATGTATGA+AGG | 0.583376 | 1_2:+2041635 | Msa0048940:CDS |
| CGAGTCTGTAGACGACGCCT+TGG | 0.585284 | 1_2:-2040585 | None:intergenic |
| ACTGATGACAGTCCTTATGA+TGG | 0.585553 | 1_2:+2042929 | Msa0048940:CDS |
| TCACTAGATAGGCAAGGTGG+TGG | 0.589093 | 1_2:+2040330 | Msa0048940:CDS |
| AAGTTGACATTCAAATGCCA+AGG | 0.590040 | 1_2:+2040568 | Msa0048940:CDS |
| TCGCTCATAACGACATTGCA+AGG | 0.594315 | 1_2:-2040486 | None:intergenic |
| GATTTGTCATACAGTGAGGA+AGG | 0.597633 | 1_2:+2040714 | Msa0048940:CDS |
| ATTGACAGCGACGATGAACC+TGG | 0.599681 | 1_2:+2040291 | Msa0048940:CDS |
| GATTCACAGGACGTATCGGA+TGG | 0.603223 | 1_2:+2041513 | Msa0048940:CDS |
| GAAAGTGATCATGATGATGA+TGG | 0.603517 | 1_2:+2040513 | Msa0048940:CDS |
| AGACAGATGTAACGGTGATG+TGG | 0.606022 | 1_2:+2041436 | Msa0048940:CDS |
| AGAAGAAAAGGAAAGCGAGT+AGG | 0.610603 | 1_2:+2041216 | Msa0048940:CDS |
| AAATGATGATGACTTAGGAG+TGG | 0.618994 | 1_2:+2040692 | Msa0048940:CDS |
| TGCTTGGGAACAGATGTATG+AGG | 0.619702 | 1_2:+2041685 | Msa0048940:CDS |
| TCTGTTGCTGTGGTAGTCAA+GGG | 0.620059 | 1_2:-2043078 | None:intergenic |
| GGCGTCGTCTACAGACTCGA+AGG | 0.625375 | 1_2:+2040589 | Msa0048940:CDS |
| TGATGAGGATGAATTAGAAG+AGG | 0.628354 | 1_2:+2041328 | Msa0048940:CDS |
| TACGGTAGCAGAAAGGGGAA+AGG | 0.629039 | 1_2:+2040926 | Msa0048940:CDS |
| ACATGTACGGTAGCAGAAAG+GGG | 0.633219 | 1_2:+2040921 | Msa0048940:CDS |
| AGACGTGTCTGATAAGTCAC+AGG | 0.633880 | 1_2:+2040776 | Msa0048940:CDS |
| GAGGACATATCAAACAGTGA+GGG | 0.634781 | 1_2:+2041347 | Msa0048940:CDS |
| AAAATTTCACTAGATAGGCA+AGG | 0.637987 | 1_2:+2040324 | Msa0048940:CDS |
| AGATTTACCAGATCGTAACA+AGG | 0.639196 | 1_2:+2041484 | Msa0048940:CDS |
| TGATGATGCTCATGATGATG+AGG | 0.643410 | 1_2:+2041313 | Msa0048940:CDS |
| AAGTCACAAGACAGATGTAA+CGG | 0.646024 | 1_2:+2041428 | Msa0048940:CDS |
| TTGGAAGAATATAATCCCGA+AGG | 0.647955 | 1_2:+2042974 | Msa0048940:CDS |
| CAAGATGTATCTGATAGGCA+AGG | 0.654782 | 1_2:+2040876 | Msa0048940:CDS |
| AGTGAGGGAGAAAACTTGAG+TGG | 0.655865 | 1_2:+2041362 | Msa0048940:CDS |
| GCAGCATCTACTACACCCAC+CGG | 0.660066 | 1_2:+2040234 | Msa0048940:CDS |
| TGATGGTCTAAAGAAAACTG+TGG | 0.662748 | 1_2:+2042946 | Msa0048940:CDS |
| TGGTCTAAAGAAAACTGTGG+AGG | 0.668082 | 1_2:+2042949 | Msa0048940:CDS |
| TGAGAAGGAATCTGTTGCTG+TGG | 0.673220 | 1_2:-2043088 | None:intergenic |
| AGAGGACATATCAAACAGTG+AGG | 0.674008 | 1_2:+2041346 | Msa0048940:CDS |
| CATGCGTGCAGTATTTGGAA+AGG | 0.681411 | 1_2:+2041614 | Msa0048940:intron |
| AGTGGATTTGTCATACAGTG+AGG | 0.704776 | 1_2:+2040710 | Msa0048940:CDS |
| ATTTCACTAGATAGGCAAGG+TGG | 0.720597 | 1_2:+2040327 | Msa0048940:CDS |
| CATAAGGACTGTCATCAGTG+AGG | 0.734650 | 1_2:-2042925 | None:intergenic |
| TGAATCTGAAAATGACGACG+AGG | 0.739287 | 1_2:+2041058 | Msa0048940:CDS |
| AGATTTACAAGATAACAACA+AGG | 0.742840 | 1_2:+2040842 | Msa0048940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTTATTTTACTTTTTTG+TGG | + | chr1_2:2042316-2042335 | Msa0048940:intron | 15.0% |
| !!! | ACTTTTTATGTAACTTTTTT+TGG | + | chr1_2:2042788-2042807 | Msa0048940:intron | 15.0% |
| !!! | ATTATTAACAATTTTCTATC+AGG | + | chr1_2:2042844-2042863 | Msa0048940:intron | 15.0% |
| !! | TTCCTTATAAGTTTACTAAT+TGG | - | chr1_2:2041095-2041114 | None:intergenic | 20.0% |
| !! | AATTAGTAAACTTATAAGGA+AGG | + | chr1_2:2041094-2041113 | Msa0048940:CDS | 20.0% |
| !!! | AGATATTATCTAAAATTCAG+AGG | + | chr1_2:2041553-2041572 | Msa0048940:intron | 20.0% |
| !!! | ATTTTTCCTTTTACATTACT+TGG | + | chr1_2:2042066-2042085 | Msa0048940:intron | 20.0% |
| !! | TTGTAATTCCATGTTATTAA+AGG | + | chr1_2:2042175-2042194 | Msa0048940:intron | 20.0% |
| !!! | GATGTTAAATTTTTGATGTA+AGG | + | chr1_2:2042397-2042416 | Msa0048940:intron | 20.0% |
| !! | ATAAAAAGTTAAATTCAGCA+AGG | - | chr1_2:2042777-2042796 | None:intergenic | 20.0% |
| !!! | TTTTATGTAACTTTTTTTGG+AGG | + | chr1_2:2042791-2042810 | Msa0048940:intron | 20.0% |
| !! | CCAAATTTTCTTCATTGTTT+TGG | - | chr1_2:2040419-2040438 | None:intergenic | 25.0% |
| ! | CCAAAACAATGAAGAAAATT+TGG | + | chr1_2:2040416-2040435 | Msa0048940:CDS | 25.0% |
| ! | AATGAAGAAAATTTGGACTT+TGG | + | chr1_2:2040423-2040442 | Msa0048940:CDS | 25.0% |
| ! | TTATGATACTTGATCTTATG+AGG | - | chr1_2:2040660-2040679 | None:intergenic | 25.0% |
| !! | TCAAAAAATGATGATGACTT+AGG | + | chr1_2:2040687-2040706 | Msa0048940:CDS | 25.0% |
| ! | AGATTTACAAGATAACAACA+AGG | + | chr1_2:2040842-2040861 | Msa0048940:CDS | 25.0% |
| ! | AGTAAGGAAAATTCTGATTT+AGG | + | chr1_2:2040975-2040994 | Msa0048940:CDS | 25.0% |
| ! | TGCCAATTAGTAAACTTATA+AGG | + | chr1_2:2041090-2041109 | Msa0048940:CDS | 25.0% |
| ! | TTCTTTATAACCTGACTAAT+CGG | - | chr1_2:2041200-2041219 | None:intergenic | 25.0% |
| ! | GCAAGATTCTTATGTAATAA+AGG | - | chr1_2:2041799-2041818 | None:intergenic | 25.0% |
| ! | TTCCATGTTATTAAAGGAAT+AGG | + | chr1_2:2042181-2042200 | Msa0048940:intron | 25.0% |
| ! | TCCATGTTATTAAAGGAATA+GGG | + | chr1_2:2042182-2042201 | Msa0048940:intron | 25.0% |
| ! | TGTGAATTTGAACTATCATA+AGG | + | chr1_2:2042275-2042294 | Msa0048940:intron | 25.0% |
| ! | CAAAAATTTAACATCACAGT+TGG | - | chr1_2:2042392-2042411 | None:intergenic | 25.0% |
| !!! | CTTTAAAATCCTTTATGTTG+TGG | + | chr1_2:2042653-2042672 | Msa0048940:intron | 25.0% |
| !!! | ATCAGGTTTCTAACATTTTT+TGG | + | chr1_2:2042861-2042880 | Msa0048940:intron | 25.0% |
| ! | TTGAAATTACAATTTCTCAG+AGG | + | chr1_2:2042884-2042903 | Msa0048940:intron | 25.0% |
| !!! | CATTTCTTATCATTTTGAGA+AGG | - | chr1_2:2043106-2043125 | None:intergenic | 25.0% |
| ! | CTTCTCAAAATGATAAGAAA+TGG | + | chr1_2:2043104-2043123 | Msa0048940:three_prime_UTR | 25.0% |
| ! | AAACATTAGCACATTAGTAA+TGG | + | chr1_2:2043149-2043168 | Msa0048940:three_prime_UTR | 25.0% |
| ! | GAAATTTTGTGAGAAATACC+AGG | - | chr1_2:2040312-2040331 | None:intergenic | 30.0% |
| CTCACAAAATTTCACTAGAT+AGG | + | chr1_2:2040319-2040338 | Msa0048940:CDS | 30.0% | |
| AAAATTTCACTAGATAGGCA+AGG | + | chr1_2:2040324-2040343 | Msa0048940:CDS | 30.0% | |
| ! | TATTTGCTGCAAATACCAAA+AGG | + | chr1_2:2040457-2040476 | Msa0048940:CDS | 30.0% |
| ! | ATTTTCTCTGTCAACATGTA+CGG | + | chr1_2:2040908-2040927 | Msa0048940:CDS | 30.0% |
| ! | CTTACTCTTTTGAGCATAAT+TGG | - | chr1_2:2040961-2040980 | None:intergenic | 30.0% |
| CAATTATGCTCAAAAGAGTA+AGG | + | chr1_2:2040959-2040978 | Msa0048940:CDS | 30.0% | |
| !! | TTACGAGTTTGTTTCCTTTT+CGG | - | chr1_2:2041026-2041045 | None:intergenic | 30.0% |
| GTCAGGTTATAAAGAAGAAA+AGG | + | chr1_2:2041204-2041223 | Msa0048940:CDS | 30.0% | |
| ! | GTCTTTTGCTTACACATTTT+CGG | - | chr1_2:2041259-2041278 | None:intergenic | 30.0% |
| ! | TCTAAAATTCAGAGGAAGAA+AGG | + | chr1_2:2041561-2041580 | Msa0048940:intron | 30.0% |
| CTAAAATTCAGAGGAAGAAA+GGG | + | chr1_2:2041562-2041581 | Msa0048940:intron | 30.0% | |
| TCATATTCCCACTTAATTTC+CGG | - | chr1_2:2041588-2041607 | None:intergenic | 30.0% | |
| ACATGACCAAGTAATGTAAA+AGG | - | chr1_2:2042075-2042094 | None:intergenic | 30.0% | |
| ! | TTTTACATTACTTGGTCATG+TGG | + | chr1_2:2042074-2042093 | Msa0048940:intron | 30.0% |
| TCCCTATTCCTTTAATAACA+TGG | - | chr1_2:2042186-2042205 | None:intergenic | 30.0% | |
| ! | AAGGAAACTTTTGTCTCTAT+AGG | + | chr1_2:2042294-2042313 | Msa0048940:intron | 30.0% |
| CGTAGGTGATGTAAAATATT+AGG | - | chr1_2:2042453-2042472 | None:intergenic | 30.0% | |
| !! | TGCATGCTTTTTGTATATGT+CGG | + | chr1_2:2042534-2042553 | Msa0048940:intron | 30.0% |
| TGTTGCAAACCTTTATATTG+CGG | + | chr1_2:2042590-2042609 | Msa0048940:intron | 30.0% | |
| ! | CACATTTTTCCGCAATATAA+AGG | - | chr1_2:2042602-2042621 | None:intergenic | 30.0% |
| CTTTATATTGCGGAAAAATG+TGG | + | chr1_2:2042600-2042619 | Msa0048940:intron | 30.0% | |
| ! | ATTCTGATTTTCAGTTACAC+AGG | - | chr1_2:2042824-2042843 | None:intergenic | 30.0% |
| ! | GTTTTCTTTAGACCATCATA+AGG | - | chr1_2:2042944-2042963 | None:intergenic | 30.0% |
| !! | TGAGATTTTCAAGAACAAAG+AGG | + | chr1_2:2043045-2043064 | Msa0048940:CDS | 30.0% |
| ! | TACAGAACTAGATTTTGCAC+CGG | - | chr1_2:2040256-2040275 | None:intergenic | 35.0% |
| ! | ACATGTTTTGCCAAAGAAGA+AGG | + | chr1_2:2040369-2040388 | Msa0048940:CDS | 35.0% |
| CAAGTTCTTTCCTTCTTCTT+TGG | - | chr1_2:2040382-2040401 | None:intergenic | 35.0% | |
| CAAAGAAGAAGGAAAGAACT+TGG | + | chr1_2:2040380-2040399 | Msa0048940:CDS | 35.0% | |
| AAGAACTTGGACAACAATCA+TGG | + | chr1_2:2040393-2040412 | Msa0048940:CDS | 35.0% | |
| CTGCAAATACCAAAAGGAAA+CGG | + | chr1_2:2040463-2040482 | Msa0048940:CDS | 35.0% | |
| ! | GAAAGTGATCATGATGATGA+TGG | + | chr1_2:2040513-2040532 | Msa0048940:CDS | 35.0% |
| AAGTTGACATTCAAATGCCA+AGG | + | chr1_2:2040568-2040587 | Msa0048940:CDS | 35.0% | |
| GAAACTCGTAAGCAAAAATC+AGG | + | chr1_2:2040611-2040630 | Msa0048940:CDS | 35.0% | |
| ! | AAATGATGATGACTTAGGAG+TGG | + | chr1_2:2040692-2040711 | Msa0048940:CDS | 35.0% |
| GGACAAGTCTAATAGTGATT+TGG | + | chr1_2:2040797-2040816 | Msa0048940:CDS | 35.0% | |
| ATGTGCAAGATGTATCTGAT+AGG | + | chr1_2:2040871-2040890 | Msa0048940:CDS | 35.0% | |
| ACTTATAAGGAAGGATGTTG+AGG | + | chr1_2:2041103-2041122 | Msa0048940:CDS | 35.0% | |
| TCATGAGCATCATCATTTGT+TGG | - | chr1_2:2041308-2041327 | None:intergenic | 35.0% | |
| TGATGAGGATGAATTAGAAG+AGG | + | chr1_2:2041328-2041347 | Msa0048940:CDS | 35.0% | |
| AAGTCACAAGACAGATGTAA+CGG | + | chr1_2:2041428-2041447 | Msa0048940:CDS | 35.0% | |
| AGATTTACCAGATCGTAACA+AGG | + | chr1_2:2041484-2041503 | Msa0048940:CDS | 35.0% | |
| TTTATCGACAGCAAATGCTT+GGG | + | chr1_2:2041670-2041689 | Msa0048940:CDS | 35.0% | |
| CAGATGTATGAGGAAACATT+TGG | + | chr1_2:2041695-2041714 | Msa0048940:CDS | 35.0% | |
| ! | GAATCTTGCACTTTGTGTTT+TGG | + | chr1_2:2041810-2041829 | Msa0048940:intron | 35.0% |
| !!! | TTGCACTTTGTGTTTTGGTT+TGG | + | chr1_2:2041815-2041834 | Msa0048940:intron | 35.0% |
| GAAAGCTACCATTTGATAGA+AGG | - | chr1_2:2041843-2041862 | None:intergenic | 35.0% | |
| ! | TTTTGTGCAAAAGCTTGAAC+TGG | - | chr1_2:2042141-2042160 | None:intergenic | 35.0% |
| AGGAATAGGGAAAATATCAG+AGG | + | chr1_2:2042195-2042214 | Msa0048940:intron | 35.0% | |
| AATAGGGAAAATATCAGAGG+AGG | + | chr1_2:2042198-2042217 | Msa0048940:intron | 35.0% | |
| !!! | AAGTCTATTTTGACTGCATG+AGG | + | chr1_2:2042228-2042247 | Msa0048940:intron | 35.0% |
| !! | ATGCTTTTTGTATATGTCGG+TGG | + | chr1_2:2042537-2042556 | Msa0048940:intron | 35.0% |
| AAATTGCGACCACAACATAA+AGG | - | chr1_2:2042665-2042684 | None:intergenic | 35.0% | |
| ! | TTATGTTGTGGTCGCAATTT+TGG | + | chr1_2:2042665-2042684 | Msa0048940:intron | 35.0% |
| TGATGGTCTAAAGAAAACTG+TGG | + | chr1_2:2042946-2042965 | Msa0048940:CDS | 35.0% | |
| TTGGAAGAATATAATCCCGA+AGG | + | chr1_2:2042974-2042993 | Msa0048940:CDS | 35.0% | |
| TCTGCAAATTTCAACTCCTT+CGG | - | chr1_2:2042993-2043012 | None:intergenic | 35.0% | |
| ATTTCACTAGATAGGCAAGG+TGG | + | chr1_2:2040327-2040346 | Msa0048940:CDS | 40.0% | |
| CAGGATGATAAAACGTCTTC+AGG | + | chr1_2:2040630-2040649 | Msa0048940:CDS | 40.0% | |
| ! | AGTGGATTTGTCATACAGTG+AGG | + | chr1_2:2040710-2040729 | Msa0048940:CDS | 40.0% |
| GATTTGTCATACAGTGAGGA+AGG | + | chr1_2:2040714-2040733 | Msa0048940:CDS | 40.0% | |
| ATCTTGCGAGCTACTTGAAT+TGG | - | chr1_2:2040826-2040845 | None:intergenic | 40.0% | |
| CAAGATGTATCTGATAGGCA+AGG | + | chr1_2:2040876-2040895 | Msa0048940:CDS | 40.0% | |
| AACATGTACGGTAGCAGAAA+GGG | + | chr1_2:2040920-2040939 | Msa0048940:CDS | 40.0% | |
| CATGTGCTGTAATTCCGAAA+AGG | + | chr1_2:2041009-2041028 | Msa0048940:CDS | 40.0% | |
| TGAATCTGAAAATGACGACG+AGG | + | chr1_2:2041058-2041077 | Msa0048940:CDS | 40.0% | |
| ! | TGATGATATGCCGATTAGTC+AGG | + | chr1_2:2041187-2041206 | Msa0048940:CDS | 40.0% |
| AGAAGAAAAGGAAAGCGAGT+AGG | + | chr1_2:2041216-2041235 | Msa0048940:CDS | 40.0% | |
| !! | ATTTTCGGAGACGCTTTAGA+TGG | - | chr1_2:2041244-2041263 | None:intergenic | 40.0% |
| ! | TGATGATGCTCATGATGATG+AGG | + | chr1_2:2041313-2041332 | Msa0048940:CDS | 40.0% |
| AGAGGACATATCAAACAGTG+AGG | + | chr1_2:2041346-2041365 | Msa0048940:CDS | 40.0% | |
| GAGGACATATCAAACAGTGA+GGG | + | chr1_2:2041347-2041366 | Msa0048940:CDS | 40.0% | |
| GGATGCAGTGTTATGTATGA+AGG | + | chr1_2:2041635-2041654 | Msa0048940:CDS | 40.0% | |
| CTTTATCGACAGCAAATGCT+TGG | + | chr1_2:2041669-2041688 | Msa0048940:CDS | 40.0% | |
| TTGTATCTTCTCTACCTACC+TGG | - | chr1_2:2041756-2041775 | None:intergenic | 40.0% | |
| ! | GTTTGGAGCCTTCTATCAAA+TGG | + | chr1_2:2041832-2041851 | Msa0048940:intron | 40.0% |
| AGTATTGCTAGATGTCACGA+AGG | + | chr1_2:2041886-2041905 | Msa0048940:intron | 40.0% | |
| TCCTGTTTGATGGAAAACAC+TGG | + | chr1_2:2041971-2041990 | Msa0048940:intron | 40.0% | |
| ! | TCCAGTGTTTTCCATCAAAC+AGG | - | chr1_2:2041975-2041994 | None:intergenic | 40.0% |
| TGTTTGATGGAAAACACTGG+AGG | + | chr1_2:2041974-2041993 | Msa0048940:intron | 40.0% | |
| TGGAAAACACTGGAGGATAA+AGG | + | chr1_2:2041981-2042000 | Msa0048940:intron | 40.0% | |
| TTACATCACCTACGCATGTT+TGG | + | chr1_2:2042459-2042478 | Msa0048940:intron | 40.0% | |
| TACATCACCTACGCATGTTT+GGG | + | chr1_2:2042460-2042479 | Msa0048940:intron | 40.0% | |
| GGTCGATACAGTTGAAATTG+TGG | + | chr1_2:2042621-2042640 | Msa0048940:intron | 40.0% | |
| ! | CACCTCTTTCTGCTGTTTAA+CGG | + | chr1_2:2042713-2042732 | Msa0048940:intron | 40.0% |
| ! | TCTGCTGTTTAACGGTGTTA+CGG | + | chr1_2:2042721-2042740 | Msa0048940:intron | 40.0% |
| ACGGCTTCTCAGTATATACA+TGG | + | chr1_2:2042740-2042759 | Msa0048940:intron | 40.0% | |
| ATTTCTCAGAGGCTGTACTT+TGG | + | chr1_2:2042895-2042914 | Msa0048940:intron | 40.0% | |
| TTTCTCAGAGGCTGTACTTT+GGG | + | chr1_2:2042896-2042915 | Msa0048940:intron | 40.0% | |
| ACTGATGACAGTCCTTATGA+TGG | + | chr1_2:2042929-2042948 | Msa0048940:CDS | 40.0% | |
| TGGTCTAAAGAAAACTGTGG+AGG | + | chr1_2:2042949-2042968 | Msa0048940:CDS | 40.0% | |
| AAAGAAAACTGTGGAGGAGT+TGG | + | chr1_2:2042955-2042974 | Msa0048940:CDS | 40.0% | |
| CTGCAAATTTCAACTCCTTC+GGG | - | chr1_2:2042992-2043011 | None:intergenic | 40.0% | |
| TGTGGTAGTCAAGGGAAATT+TGG | - | chr1_2:2043073-2043092 | None:intergenic | 40.0% | |
| !! | GAACTAGATTTTGCACCGGT+GGG | - | chr1_2:2040252-2040271 | None:intergenic | 45.0% |
| ! | AGAACTAGATTTTGCACCGG+TGG | - | chr1_2:2040253-2040272 | None:intergenic | 45.0% |
| ! | ATTGCAAGGCCGTTTCCTTT+TGG | - | chr1_2:2040475-2040494 | None:intergenic | 45.0% |
| TCGCTCATAACGACATTGCA+AGG | - | chr1_2:2040489-2040508 | None:intergenic | 45.0% | |
| AGACGTGTCTGATAAGTCAC+AGG | + | chr1_2:2040776-2040795 | Msa0048940:CDS | 45.0% | |
| GTATCTGATAGGCAAGGTAG+TGG | + | chr1_2:2040882-2040901 | Msa0048940:CDS | 45.0% | |
| CAACATGTACGGTAGCAGAA+AGG | + | chr1_2:2040919-2040938 | Msa0048940:CDS | 45.0% | |
| ACATGTACGGTAGCAGAAAG+GGG | + | chr1_2:2040921-2040940 | Msa0048940:CDS | 45.0% | |
| AGTGAGGGAGAAAACTTGAG+TGG | + | chr1_2:2041362-2041381 | Msa0048940:CDS | 45.0% | |
| AGACAGATGTAACGGTGATG+TGG | + | chr1_2:2041436-2041455 | Msa0048940:CDS | 45.0% | |
| AACAAGGATTCCCGATTCAC+AGG | + | chr1_2:2041500-2041519 | Msa0048940:CDS | 45.0% | |
| ATCCGATACGTCCTGTGAAT+CGG | - | chr1_2:2041514-2041533 | None:intergenic | 45.0% | |
| AATTCAGAGGAAGAAAGGGC+CGG | + | chr1_2:2041566-2041585 | Msa0048940:intron | 45.0% | |
| AGAAAGGGCCGGAAATTAAG+TGG | + | chr1_2:2041577-2041596 | Msa0048940:intron | 45.0% | |
| GAAAGGGCCGGAAATTAAGT+GGG | + | chr1_2:2041578-2041597 | Msa0048940:intron | 45.0% | |
| ACTGACATGCGTGCAGTATT+TGG | + | chr1_2:2041609-2041628 | Msa0048940:intron | 45.0% | |
| CATGCGTGCAGTATTTGGAA+AGG | + | chr1_2:2041614-2041633 | Msa0048940:intron | 45.0% | |
| TGCTTGGGAACAGATGTATG+AGG | + | chr1_2:2041685-2041704 | Msa0048940:CDS | 45.0% | |
| TTAGCAAGTATGATGCTGCC+AGG | + | chr1_2:2041735-2041754 | Msa0048940:CDS | 45.0% | |
| ACCTTCAACGTCCTGTTTGA+TGG | + | chr1_2:2041961-2041980 | Msa0048940:intron | 45.0% | |
| TCCATCAAACAGGACGTTGA+AGG | - | chr1_2:2041965-2041984 | None:intergenic | 45.0% | |
| TGTATATGTCGGTGGCAGTA+TGG | + | chr1_2:2042545-2042564 | Msa0048940:intron | 45.0% | |
| !!! | TGTGGTCGCAATTTTGGTTG+CGG | + | chr1_2:2042671-2042690 | Msa0048940:intron | 45.0% |
| !! | AAACAGCAGAAAGAGGTGTC+TGG | - | chr1_2:2042711-2042730 | None:intergenic | 45.0% |
| CACCGTTAAACAGCAGAAAG+AGG | - | chr1_2:2042718-2042737 | None:intergenic | 45.0% | |
| CATAAGGACTGTCATCAGTG+AGG | - | chr1_2:2042928-2042947 | None:intergenic | 45.0% | |
| TCTGTTGCTGTGGTAGTCAA+GGG | - | chr1_2:2043081-2043100 | None:intergenic | 45.0% | |
| ATCTGTTGCTGTGGTAGTCA+AGG | - | chr1_2:2043082-2043101 | None:intergenic | 45.0% | |
| TGAGAAGGAATCTGTTGCTG+TGG | - | chr1_2:2043091-2043110 | None:intergenic | 45.0% | |
| ATTGACAGCGACGATGAACC+TGG | + | chr1_2:2040291-2040310 | Msa0048940:CDS | 50.0% | |
| TCACTAGATAGGCAAGGTGG+TGG | + | chr1_2:2040330-2040349 | Msa0048940:CDS | 50.0% | |
| TACGGTAGCAGAAAGGGGAA+AGG | + | chr1_2:2040926-2040945 | Msa0048940:CDS | 50.0% | |
| CGGGAATCCTTGTTACGATC+TGG | - | chr1_2:2041494-2041513 | None:intergenic | 50.0% | |
| TCCCGATTCACAGGACGTAT+CGG | + | chr1_2:2041509-2041528 | Msa0048940:CDS | 50.0% | |
| TCCGATACGTCCTGTGAATC+GGG | - | chr1_2:2041513-2041532 | None:intergenic | 50.0% | |
| GATTCACAGGACGTATCGGA+TGG | + | chr1_2:2041513-2041532 | Msa0048940:CDS | 50.0% | |
| GAGGAAACATTTGGCCGTGA+CGG | + | chr1_2:2041704-2041723 | Msa0048940:CDS | 50.0% | |
| AGGAAACATTTGGCCGTGAC+GGG | + | chr1_2:2041705-2041724 | Msa0048940:CDS | 50.0% | |
| CAAGTATGATGCTGCCAGGT+AGG | + | chr1_2:2041739-2041758 | Msa0048940:intron | 50.0% | |
| GCTCAATCCCAAACATGCGT+AGG | - | chr1_2:2042470-2042489 | None:intergenic | 50.0% | |
| ! | TCAGAGGCTGTACTTTGGGA+GGG | + | chr1_2:2042900-2042919 | Msa0048940:intron | 50.0% |
| GCAGCATCTACTACACCCAC+CGG | + | chr1_2:2040234-2040253 | Msa0048940:CDS | 55.0% | |
| TGCTAAATCCACGCCCGTCA+CGG | - | chr1_2:2041721-2041740 | None:intergenic | 55.0% | |
| CTCAGAGGCTGTACTTTGGG+AGG | + | chr1_2:2042899-2042918 | Msa0048940:intron | 55.0% | |
| CGAGTCTGTAGACGACGCCT+TGG | - | chr1_2:2040588-2040607 | None:intergenic | 60.0% | |
| GGCGTCGTCTACAGACTCGA+AGG | + | chr1_2:2040589-2040608 | Msa0048940:CDS | 60.0% | |
| !! | ACATTTGGCCGTGACGGGCG+TGG | + | chr1_2:2041710-2041729 | Msa0048940:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 2040231 | 2043192 | 2040231 | ID=Msa0048940;Name=Msa0048940 |
| chr1_2 | mRNA | 2040231 | 2043192 | 2040231 | ID=Msa0048940-mRNA-1;Parent=Msa0048940;Name=Msa0048940-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.5|0.33|1|1|1|3|108|543 |
| chr1_2 | exon | 2040231 | 2041549 | 2040231 | ID=Msa0048940-mRNA-1:exon:365;Parent=Msa0048940-mRNA-1 |
| chr1_2 | exon | 2041625 | 2041756 | 2041625 | ID=Msa0048940-mRNA-1:exon:366;Parent=Msa0048940-mRNA-1 |
| chr1_2 | exon | 2042904 | 2043192 | 2042904 | ID=Msa0048940-mRNA-1:exon:367;Parent=Msa0048940-mRNA-1 |
| chr1_2 | CDS | 2040231 | 2041549 | 2040231 | ID=Msa0048940-mRNA-1:cds;Parent=Msa0048940-mRNA-1 |
| chr1_2 | CDS | 2041625 | 2041756 | 2041625 | ID=Msa0048940-mRNA-1:cds;Parent=Msa0048940-mRNA-1 |
| chr1_2 | CDS | 2042904 | 2043084 | 2042904 | ID=Msa0048940-mRNA-1:cds;Parent=Msa0048940-mRNA-1 |
| chr1_2 | three_prime_UTR | 2043085 | 2043192 | 2043085 | ID=Msa0048940-mRNA-1:three_prime_utr;Parent=Msa0048940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
