AlfalfaGEDB | Msa0059740

M. sativa cultivar zhongmu-4 / Msa0059740

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0059740	KEH40424.1	83.333	582	81	6	1	567	1	581	0.0	888

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0059740	A0A072VEK3	83.333	582	81	6	1	567	1	581	0.0	888

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0015120	Msa0059740	0.810552	1.089078e-50	-8.615850e-47
Msa0048940	Msa0059740	0.843349	1.479672e-58	-8.615850e-47
Msa0056450	Msa0059740	0.815775	7.776616e-52	-8.615850e-47
Msa0059740	Msa0064290	0.811598	6.462357e-51	-8.615850e-47
Msa0059740	Msa0212990	0.801877	7.316907e-49	-8.615850e-47
Msa0059740	Msa0241470	0.805056	1.604817e-49	-8.615850e-47
Msa0059740	Msa0330340	0.812871	3.409096e-51	-8.615850e-47
Msa0059740	Msa0360210	0.807154	5.805470e-50	-8.615850e-47
Msa0059740	Msa0365100	0.801298	9.618930e-49	-8.615850e-47
Msa0059740	Msa0372810	0.800462	1.425166e-48	-8.615850e-47

Showing 1 to 10 of 29 entries

Previous1 2 3Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0059740	MtrunA17_Chr1g0159011	83.333	582	81	6	1	567	25	605	0.0	887
Msa0059740	MtrunA17_Chr1g0159151	59.889	541	159	14	1	509	1	515	4.07e-157	459
Msa0059740	MtrunA17_Chr1g0159081	49.537	216	70	8	222	430	2	185	1.31e-34	129
Msa0059740	MtrunA17_Chr1g0159081	41.117	197	79	6	38	213	2	182	4.46e-20	88.2

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0059740	AT5G53220.5	43.096	239	107	5	330	567	152	362	2.36e-39	148
Msa0059740	AT5G53220.3	43.096	239	107	5	330	567	152	362	2.36e-39	148
Msa0059740	AT5G53220.2	43.096	239	107	5	330	567	152	362	2.36e-39	148
Msa0059740	AT5G53220.4	43.096	239	107	5	330	567	152	362	2.36e-39	148
Msa0059740	AT5G53220.6	43.096	239	107	5	330	567	152	362	2.36e-39	148
Msa0059740	AT5G53220.1	43.096	239	107	5	330	567	152	362	2.36e-39	148
Msa0059740	AT5G53220.7	43.096	239	107	5	330	567	152	362	2.36e-39	148

Showing 1 to 7 of 7 entries

Previous1Next

Find 99 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTTCACTAGATAGGCA+AGG	0.637987	1_2:-17024060	Msa0059740:CDS
AAACATTAGCACATTAGTAA+TGG	0.568851	1_2:-17021237	Msa0059740:three_prime_UTR
AAAGAAAACTGTGGAGGAGT+TGG	0.490542	1_2:-17021431	Msa0059740:CDS
AAATGATGATGACTTAGGAG+TGG	0.618994	1_2:-17023692	Msa0059740:CDS
AACATGTACGGTAGCAGAAA+GGG	0.457775	1_2:-17023464	Msa0059740:CDS
AAGAACTTGGACAACAATCA+TGG	0.534690	1_2:-17023991	Msa0059740:CDS
AAGTCACAAGACAGATGTAA+CGG	0.646024	1_2:-17022956	Msa0059740:CDS
AAGTTGACATTCAAATGCCA+AGG	0.590040	1_2:-17023816	Msa0059740:CDS
AATGAAGAAAATTTGGACTT+TGG	0.391567	1_2:-17023961	Msa0059740:CDS
AATTAGTAAACTTATAAGGA+AGG	0.570273	1_2:-17023290	Msa0059740:CDS

Showing 1 to 10 of 99 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CTCACAAAATTTCACTAGAT+AGG	-	chr1_2:17021304-17021323	Msa0059740:three_prime_UTR	30.0%
AAAATTTCACTAGATAGGCA+AGG	-	chr1_2:17021309-17021328	Msa0059740:exon	30.0%
CAATTATGCTCAAAAGAGTA+AGG	-	chr1_2:17021944-17021963	Msa0059740:intron	30.0%
GTCAGGTTATAAAGAAGAAA+AGG	-	chr1_2:17022189-17022208	Msa0059740:intron	30.0%
CTAAAATTCAGAGGAAGAAA+GGG	-	chr1_2:17022546-17022565	Msa0059740:intron	30.0%
TCATATTCCCACTTAATTTC+CGG	+	chr1_2:17022572-17022591	None:intergenic	30.0%
ACATGACCAAGTAATGTAAA+AGG	+	chr1_2:17023060-17023079	None:intergenic	30.0%
TCCCTATTCCTTTAATAACA+TGG	+	chr1_2:17023171-17023190	None:intergenic	30.0%
CGTAGGTGATGTAAAATATT+AGG	+	chr1_2:17023436-17023455	None:intergenic	30.0%
TGTTGCAAACCTTTATATTG+CGG	-	chr1_2:17023573-17023592	Msa0059740:CDS	30.0%

Showing 1 to 10 of 172 entries

Previous1 2 3 4 5…18Next

Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	17021216	17024175	17021216	ID=Msa0059740;Name=Msa0059740
chr1_2	mRNA	17021216	17024175	17021216	ID=Msa0059740-mRNA-1;Parent=Msa0059740;Name=Msa0059740-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0\|1\|0.5\|1\|1\|1\|2\|108\|568
chr1_2	exon	17021216	17021504	17021216	ID=Msa0059740-mRNA-1:exon:6687;Parent=Msa0059740-mRNA-1
chr1_2	exon	17022650	17024175	17022650	ID=Msa0059740-mRNA-1:exon:6686;Parent=Msa0059740-mRNA-1
chr1_2	CDS	17022650	17024175	17022650	ID=Msa0059740-mRNA-1:cds;Parent=Msa0059740-mRNA-1
chr1_2	CDS	17021324	17021504	17021324	ID=Msa0059740-mRNA-1:cds;Parent=Msa0059740-mRNA-1
chr1_2	three_prime_UTR	17021216	17021323	17021216	ID=Msa0059740-mRNA-1:three_prime_utr;Parent=Msa0059740-mRNA-1

Gene Sequence

>Msa0059740

ATGGCAGCATCTACTACACCCACCGGTGCAAAATCTAGTTCTGTAAATGTAATTGATATCATTGACAGCGACGATGAACCTGGTATTTCTCACAAAATTTCACTAGATAGGCAAGGTGGTGGAAACATTTCACTTGCAACATGTTTTGCCAAAGAAGAAGGAAAGAACTTGGACAACAATCATGGCCAAAACAATGAAGAAAATTTGGACTTTGGTGAAGATGTCTTATTTGCTGCAAATACCAAAAGGAAACGGCCTTGCAATGTCGTTATGAGCGAGTCAGAAAGTGATCATGATGATGATGGTATGAGCAACTCTATATCTACTGCTAATTTAGAAGTTGACATTCAAATGCCAAGGCGTCGTCTACAGACTCGAAGGAAACTCGTAAGCAAAAATCAGGATGATAAAACGTCTTCAGGTAGACCTCATAAGATCAAGTATCATAAGAGTATTTCAAAAAATGATGATGACTTAGGAGTGGATTTGTCATACAGTGAGGAAGGTAATATTAATGATTTTATTGTTGATGCATCTGATTGTGAAGACGTGTCTGATAAGTCACAGGACAAGTCTAATAGTGATTTGGATGCCAATTCAAGTAGCTCGCAAGATTTACAAGATAACAACAAGGATTCTTATGTGCAAGATGTATCTGATAGGCAAGGTAGTGGAAAATTTTCTCTGTCAACATGTACGGTAGCAGAAAGGGGAAAGGACTCTAATTCCAATTATGCTCAAAAGAGTAAGGAAAATTCTGATTTAGGCGAAGATTACTCATGTGCTGTAATTCCGAAAAGGAAACAAACTCGTAATGTTGTTCTAAGTGAATCTGAAAATGACGACGAGGACGATGATTTGCCAATTAGTAAACTTATAAGGAAGGATGTTGAGGAAGTCAGTGTTGACGATTTAGTAAATGCTGTTGATGATGCTGCTGCTGATAGTGACGATGATGATGATATGCCGATTAGTCAGGTTATAAAGAAGAAAAGGAAAGCGAGTAGGCGCCATCTAAAGCGTCTCCGAAAATGTGTAAGCAAAAGACATGATGATAAAACATCTTTGTGTTTTCCAACAAATGATGATGCTCATGATGATGAGGATGAATTAGAAGAGGACATATCAAACAGTGAGGGAGAAAACTTGAGTGGTTTTATTGTTGATGATTCTGACGTATCAGAAATCAACTCTGACAAGTCACAAGACAGATGTAACGGTGATGTGGACTCTGATGATTCGAATATATCGCAAGATTTACCAGATCGTAACAAGGATTCCGATTCACAGGACGTATCGGATGGAGAAATAGACTTGAGTAAGATATTATCTAAAATTCAGAGGAAGAAAGGGCCGGAAATTAAGTGGGAATATGAAACTGACATGCGTGCAGTATTTGGAAAGGATGCAGTGTTATGTATGAAGGCTGTCTGCGTTCTTTATCGACAGCAAATGCTTGGGGAACAGATGTATGAGGAAACATTTGGCCGTGACGGGCGTGGATTTAGCAAGTATGATGCTGCCAGAGGCTGTACTTTGGGAGGGTTCCTCACTGATGACAGTCCTTATGATGGTCTAAAGAAAACTGTGGAGGAGTTGGAAGAATATAATCCCGAAGGAGTTGAAATTTGCAGAACACTTGCTCTTAAATACTCGAAACAAATATTTGAGATTTTCAAGAACAAAGAGGATCCAAATTTCCCTTGA

Protein sequence

>Msa0059740

MAASTTPTGAKSSSVNVIDIIDSDDEPGISHKISLDRQGGGNISLATCFAKEEGKNLDNNHGQNNEENLDFGEDVLFAANTKRKRPCNVVMSESESDHDDDGMSNSISTANLEVDIQMPRRRLQTRRKLVSKNQDDKTSSGRPHKIKYHKSISKNDDDLGVDLSYSEEGNINDFIVDASDCEDVSDKSQDKSNSDLDANSSSSQDLQDNNKDSYVQDVSDRQGSGKFSLSTCTVAERGKDSNSNYAQKSKENSDLGEDYSCAVIPKRKQTRNVVLSESENDDEDDDLPISKLIRKDVEEVSVDDLVNAVDDAAADSDDDDDMPISQVIKKKRKASRRHLKRLRKCVSKRHDDKTSLCFPTNDDAHDDEDELEEDISNSEGENLSGFIVDDSDVSEINSDKSQDRCNGDVDSDDSNISQDLPDRNKDSDSQDVSDGEIDLSKILSKIQRKKGPEIKWEYETDMRAVFGKDAVLCMKAVCVLYRQQMLGEQMYEETFGRDGRGFSKYDAARGCTLGGFLTDDSPYDGLKKTVEELEEYNPEGVEICRTLALKYSKQIFEIFKNKEDPNFP*