Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0059740 | KEH40424.1 | 83.333 | 582 | 81 | 6 | 1 | 567 | 1 | 581 | 0.0 | 888 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0059740 | A0A072VEK3 | 83.333 | 582 | 81 | 6 | 1 | 567 | 1 | 581 | 0.0 | 888 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015120 | Msa0059740 | 0.810552 | 1.089078e-50 | -8.615850e-47 |
| Msa0048940 | Msa0059740 | 0.843349 | 1.479672e-58 | -8.615850e-47 |
| Msa0056450 | Msa0059740 | 0.815775 | 7.776616e-52 | -8.615850e-47 |
| Msa0059740 | Msa0064290 | 0.811598 | 6.462357e-51 | -8.615850e-47 |
| Msa0059740 | Msa0212990 | 0.801877 | 7.316907e-49 | -8.615850e-47 |
| Msa0059740 | Msa0241470 | 0.805056 | 1.604817e-49 | -8.615850e-47 |
| Msa0059740 | Msa0330340 | 0.812871 | 3.409096e-51 | -8.615850e-47 |
| Msa0059740 | Msa0360210 | 0.807154 | 5.805470e-50 | -8.615850e-47 |
| Msa0059740 | Msa0365100 | 0.801298 | 9.618930e-49 | -8.615850e-47 |
| Msa0059740 | Msa0372810 | 0.800462 | 1.425166e-48 | -8.615850e-47 |
| Msa0059740 | Msa0406770 | 0.805456 | 1.323408e-49 | -8.615850e-47 |
| Msa0059740 | Msa0481530 | 0.806592 | 7.634764e-50 | -8.615850e-47 |
| Msa0059740 | Msa0512870 | 0.814054 | 1.873085e-51 | -8.615850e-47 |
| Msa0059740 | Msa0529890 | 0.800760 | 1.239247e-48 | -8.615850e-47 |
| Msa0059740 | Msa0574390 | 0.809091 | 2.245842e-50 | -8.615850e-47 |
| Msa0059740 | Msa0585560 | 0.809123 | 2.210626e-50 | -8.615850e-47 |
| Msa0059740 | Msa0625720 | 0.800563 | 1.358808e-48 | -8.615850e-47 |
| Msa0059740 | Msa0637900 | 0.803541 | 3.318810e-49 | -8.615850e-47 |
| Msa0059740 | Msa0661320 | 0.819593 | 1.070308e-52 | -8.615850e-47 |
| Msa0059740 | Msa0824660 | 0.802645 | 5.084473e-49 | -8.615850e-47 |
| Msa0059740 | Msa0868160 | 0.818645 | 1.759332e-52 | -8.615850e-47 |
| Msa0059740 | Msa0926470 | 0.816930 | 4.289633e-52 | -8.615850e-47 |
| Msa0059740 | Msa0944660 | 0.807749 | 4.341882e-50 | -8.615850e-47 |
| Msa0059740 | Msa1036410 | 0.805785 | 1.128651e-49 | -8.615850e-47 |
| Msa0059740 | Msa1036610 | 0.808724 | 2.690435e-50 | -8.615850e-47 |
| Msa0059740 | Msa1075540 | 0.802300 | 5.990699e-49 | -8.615850e-47 |
| Msa0059740 | Msa1093260 | 0.802108 | 6.560088e-49 | -8.615850e-47 |
| Msa0059740 | Msa1204530 | 0.801682 | 8.022701e-49 | -8.615850e-47 |
| Msa0059740 | Msa1383530 | 0.804478 | 2.118657e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0059740 | MtrunA17_Chr1g0159011 | 83.333 | 582 | 81 | 6 | 1 | 567 | 25 | 605 | 0.0 | 887 |
| Msa0059740 | MtrunA17_Chr1g0159151 | 59.889 | 541 | 159 | 14 | 1 | 509 | 1 | 515 | 4.07e-157 | 459 |
| Msa0059740 | MtrunA17_Chr1g0159081 | 49.537 | 216 | 70 | 8 | 222 | 430 | 2 | 185 | 1.31e-34 | 129 |
| Msa0059740 | MtrunA17_Chr1g0159081 | 41.117 | 197 | 79 | 6 | 38 | 213 | 2 | 182 | 4.46e-20 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0059740 | AT5G53220.5 | 43.096 | 239 | 107 | 5 | 330 | 567 | 152 | 362 | 2.36e-39 | 148 |
| Msa0059740 | AT5G53220.3 | 43.096 | 239 | 107 | 5 | 330 | 567 | 152 | 362 | 2.36e-39 | 148 |
| Msa0059740 | AT5G53220.2 | 43.096 | 239 | 107 | 5 | 330 | 567 | 152 | 362 | 2.36e-39 | 148 |
| Msa0059740 | AT5G53220.4 | 43.096 | 239 | 107 | 5 | 330 | 567 | 152 | 362 | 2.36e-39 | 148 |
| Msa0059740 | AT5G53220.6 | 43.096 | 239 | 107 | 5 | 330 | 567 | 152 | 362 | 2.36e-39 | 148 |
| Msa0059740 | AT5G53220.1 | 43.096 | 239 | 107 | 5 | 330 | 567 | 152 | 362 | 2.36e-39 | 148 |
| Msa0059740 | AT5G53220.7 | 43.096 | 239 | 107 | 5 | 330 | 567 | 152 | 362 | 2.36e-39 | 148 |
Find 99 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGTTCTTTCCTTCTTCTT+TGG | 0.167172 | 1_2:+17024005 | None:intergenic |
| CCAAAACAATGAAGAAAATT+TGG | 0.207616 | 1_2:-17023968 | Msa0059740:CDS |
| TTCCTTATAAGTTTACTAAT+TGG | 0.230321 | 1_2:+17023292 | None:intergenic |
| AGTAAGGAAAATTCTGATTT+AGG | 0.238486 | 1_2:-17023409 | Msa0059740:CDS |
| ACTGACATGCGTGCAGTATT+TGG | 0.275393 | 1_2:-17022776 | Msa0059740:CDS |
| CTGCAAATTTCAACTCCTTC+GGG | 0.292903 | 1_2:+17021397 | None:intergenic |
| TGCCAATTAGTAAACTTATA+AGG | 0.299713 | 1_2:-17023294 | Msa0059740:CDS |
| TCATATTCCCACTTAATTTC+CGG | 0.304941 | 1_2:+17022800 | None:intergenic |
| TGTGGTAGTCAAGGGAAATT+TGG | 0.329725 | 1_2:+17021316 | None:intergenic |
| TTCTTTATAACCTGACTAAT+CGG | 0.339707 | 1_2:+17023187 | None:intergenic |
| ATTGCAAGGCCGTTTCCTTT+TGG | 0.341522 | 1_2:+17023912 | None:intergenic |
| ATCTTGCGAGCTACTTGAAT+TGG | 0.341748 | 1_2:+17023561 | None:intergenic |
| TTTCTCAGAGGCTGTACTTT+GGG | 0.347215 | 1_2:-17021490 | Msa0059740:intron |
| CAGGATGATAAAACGTCTTC+AGG | 0.357356 | 1_2:-17023754 | Msa0059740:CDS |
| TCTGCAAATTTCAACTCCTT+CGG | 0.360255 | 1_2:+17021396 | None:intergenic |
| GGACAAGTCTAATAGTGATT+TGG | 0.391336 | 1_2:-17023587 | Msa0059740:CDS |
| AATGAAGAAAATTTGGACTT+TGG | 0.391567 | 1_2:-17023961 | Msa0059740:CDS |
| CTCACAAAATTTCACTAGAT+AGG | 0.393139 | 1_2:-17024065 | Msa0059740:CDS |
| CTTCTCAAAATGATAAGAAA+TGG | 0.403459 | 1_2:-17021282 | Msa0059740:three_prime_UTR |
| TCTAAAATTCAGAGGAAGAA+AGG | 0.406307 | 1_2:-17022824 | Msa0059740:CDS |
| GTCAGGTTATAAAGAAGAAA+AGG | 0.421340 | 1_2:-17023180 | Msa0059740:CDS |
| CTTTATCGACAGCAAATGCT+TGG | 0.431929 | 1_2:-17022716 | Msa0059740:CDS |
| TTTATCGACAGCAAATGCTT+GGG | 0.435305 | 1_2:-17022715 | Msa0059740:CDS |
| ATCCGATACGTCCTGTGAAT+CGG | 0.442377 | 1_2:+17022874 | None:intergenic |
| CTCAGAGGCTGTACTTTGGG+AGG | 0.449009 | 1_2:-17021487 | Msa0059740:intron |
| TTATGATACTTGATCTTATG+AGG | 0.452680 | 1_2:+17023727 | None:intergenic |
| AGAAAGGGCCGGAAATTAAG+TGG | 0.454905 | 1_2:-17022808 | Msa0059740:CDS |
| AACATGTACGGTAGCAGAAA+GGG | 0.457775 | 1_2:-17023464 | Msa0059740:CDS |
| TCATGAGCATCATCATTTGT+TGG | 0.473135 | 1_2:+17023079 | None:intergenic |
| ATTTCTCAGAGGCTGTACTT+TGG | 0.475823 | 1_2:-17021491 | Msa0059740:intron |
| AGGAAACATTTGGCCGTGAC+GGG | 0.476824 | 1_2:-17022679 | Msa0059740:CDS |
| ACATTTGGCCGTGACGGGCG+TGG | 0.479632 | 1_2:-17022674 | Msa0059740:CDS |
| TGATGATATGCCGATTAGTC+AGG | 0.484729 | 1_2:-17023197 | Msa0059740:CDS |
| TCGGAATCCTTGTTACGATC+TGG | 0.485059 | 1_2:+17022893 | None:intergenic |
| ATGTGCAAGATGTATCTGAT+AGG | 0.485167 | 1_2:-17023513 | Msa0059740:CDS |
| AAAGAAAACTGTGGAGGAGT+TGG | 0.490542 | 1_2:-17021431 | Msa0059740:CDS |
| TCAGAGGCTGTACTTTGGGA+GGG | 0.491157 | 1_2:-17021486 | Msa0059740:intron |
| CTAAAATTCAGAGGAAGAAA+GGG | 0.491197 | 1_2:-17022823 | Msa0059740:CDS |
| ATCTGTTGCTGTGGTAGTCA+AGG | 0.503019 | 1_2:+17021307 | None:intergenic |
| CAATTATGCTCAAAAGAGTA+AGG | 0.504524 | 1_2:-17023425 | Msa0059740:CDS |
| CAGATGTATGAGGAAACATT+TGG | 0.507685 | 1_2:-17022689 | Msa0059740:CDS |
| CAACATGTACGGTAGCAGAA+AGG | 0.513020 | 1_2:-17023465 | Msa0059740:CDS |
| CATGTGCTGTAATTCCGAAA+AGG | 0.513552 | 1_2:-17023375 | Msa0059740:CDS |
| TATTTGCTGCAAATACCAAA+AGG | 0.524727 | 1_2:-17023927 | Msa0059740:CDS |
| TTCCGATTCACAGGACGTAT+CGG | 0.524952 | 1_2:-17022876 | Msa0059740:CDS |
| TGCTAAATCCACGCCCGTCA+CGG | 0.529350 | 1_2:+17022666 | None:intergenic |
| AAGAACTTGGACAACAATCA+TGG | 0.534690 | 1_2:-17023991 | Msa0059740:CDS |
| CAAAGAAGAAGGAAAGAACT+TGG | 0.535289 | 1_2:-17024004 | Msa0059740:CDS |
| GCTTGGGGAACAGATGTATG+AGG | 0.550064 | 1_2:-17022699 | Msa0059740:CDS |
| GAGGAAACATTTGGCCGTGA+CGG | 0.554171 | 1_2:-17022680 | Msa0059740:CDS |
| GTATCTGATAGGCAAGGTAG+TGG | 0.560203 | 1_2:-17023502 | Msa0059740:CDS |
| ACTTATAAGGAAGGATGTTG+AGG | 0.567746 | 1_2:-17023281 | Msa0059740:CDS |
| AAACATTAGCACATTAGTAA+TGG | 0.568851 | 1_2:-17021237 | Msa0059740:three_prime_UTR |
| CTGCAAATACCAAAAGGAAA+CGG | 0.569805 | 1_2:-17023921 | Msa0059740:CDS |
| AATTAGTAAACTTATAAGGA+AGG | 0.570273 | 1_2:-17023290 | Msa0059740:CDS |
| TAACAAGGATTCCGATTCAC+AGG | 0.571412 | 1_2:-17022885 | Msa0059740:CDS |
| TTAGCAAGTATGATGCTGCC+AGG | 0.578186 | 1_2:-17022649 | Msa0059740:intron |
| GGATGCAGTGTTATGTATGA+AGG | 0.583376 | 1_2:-17022750 | Msa0059740:CDS |
| CGAGTCTGTAGACGACGCCT+TGG | 0.585284 | 1_2:+17023799 | None:intergenic |
| ACTGATGACAGTCCTTATGA+TGG | 0.585553 | 1_2:-17021457 | Msa0059740:CDS |
| TCACTAGATAGGCAAGGTGG+TGG | 0.589093 | 1_2:-17024054 | Msa0059740:CDS |
| AAGTTGACATTCAAATGCCA+AGG | 0.590040 | 1_2:-17023816 | Msa0059740:CDS |
| TTATCGACAGCAAATGCTTG+GGG | 0.592426 | 1_2:-17022714 | Msa0059740:CDS |
| AATTCAGAGGAAGAAAGGGC+CGG | 0.592702 | 1_2:-17022819 | Msa0059740:CDS |
| TCGCTCATAACGACATTGCA+AGG | 0.594315 | 1_2:+17023898 | None:intergenic |
| GATTTGTCATACAGTGAGGA+AGG | 0.597633 | 1_2:-17023670 | Msa0059740:CDS |
| ATTGACAGCGACGATGAACC+TGG | 0.599681 | 1_2:-17024093 | Msa0059740:CDS |
| GATTCACAGGACGTATCGGA+TGG | 0.603223 | 1_2:-17022872 | Msa0059740:CDS |
| GAAAGTGATCATGATGATGA+TGG | 0.603517 | 1_2:-17023871 | Msa0059740:CDS |
| AGACAGATGTAACGGTGATG+TGG | 0.606022 | 1_2:-17022948 | Msa0059740:CDS |
| AGAAGAAAAGGAAAGCGAGT+AGG | 0.610603 | 1_2:-17023168 | Msa0059740:CDS |
| AAATGATGATGACTTAGGAG+TGG | 0.618994 | 1_2:-17023692 | Msa0059740:CDS |
| TCTGTTGCTGTGGTAGTCAA+GGG | 0.620059 | 1_2:+17021308 | None:intergenic |
| GGCGTCGTCTACAGACTCGA+AGG | 0.625375 | 1_2:-17023795 | Msa0059740:CDS |
| TGATGAGGATGAATTAGAAG+AGG | 0.628354 | 1_2:-17023056 | Msa0059740:CDS |
| TACGGTAGCAGAAAGGGGAA+AGG | 0.629039 | 1_2:-17023458 | Msa0059740:CDS |
| ACATGTACGGTAGCAGAAAG+GGG | 0.633219 | 1_2:-17023463 | Msa0059740:CDS |
| AGACGTGTCTGATAAGTCAC+AGG | 0.633880 | 1_2:-17023608 | Msa0059740:CDS |
| GAGGACATATCAAACAGTGA+GGG | 0.634781 | 1_2:-17023037 | Msa0059740:CDS |
| AGATATTATCTAAAATTCAG+AGG | 0.636003 | 1_2:-17022832 | Msa0059740:CDS |
| AAAATTTCACTAGATAGGCA+AGG | 0.637987 | 1_2:-17024060 | Msa0059740:CDS |
| AGATTTACCAGATCGTAACA+AGG | 0.639196 | 1_2:-17022900 | Msa0059740:CDS |
| TGATGATGCTCATGATGATG+AGG | 0.643410 | 1_2:-17023071 | Msa0059740:CDS |
| AAGTCACAAGACAGATGTAA+CGG | 0.646024 | 1_2:-17022956 | Msa0059740:CDS |
| TTGGAAGAATATAATCCCGA+AGG | 0.647955 | 1_2:-17021412 | Msa0059740:CDS |
| CAAGATGTATCTGATAGGCA+AGG | 0.654782 | 1_2:-17023508 | Msa0059740:CDS |
| AGTGAGGGAGAAAACTTGAG+TGG | 0.655865 | 1_2:-17023022 | Msa0059740:CDS |
| GAAAGGGCCGGAAATTAAGT+GGG | 0.658462 | 1_2:-17022807 | Msa0059740:CDS |
| GCAGCATCTACTACACCCAC+CGG | 0.660066 | 1_2:-17024150 | Msa0059740:CDS |
| TGATGGTCTAAAGAAAACTG+TGG | 0.662748 | 1_2:-17021440 | Msa0059740:CDS |
| TGGTCTAAAGAAAACTGTGG+AGG | 0.668082 | 1_2:-17021437 | Msa0059740:CDS |
| TGAGAAGGAATCTGTTGCTG+TGG | 0.673220 | 1_2:+17021298 | None:intergenic |
| AGAGGACATATCAAACAGTG+AGG | 0.674008 | 1_2:-17023038 | Msa0059740:CDS |
| CATGCGTGCAGTATTTGGAA+AGG | 0.681411 | 1_2:-17022771 | Msa0059740:CDS |
| AGTGGATTTGTCATACAGTG+AGG | 0.704776 | 1_2:-17023674 | Msa0059740:CDS |
| ATTTCACTAGATAGGCAAGG+TGG | 0.720597 | 1_2:-17024057 | Msa0059740:CDS |
| CATAAGGACTGTCATCAGTG+AGG | 0.734650 | 1_2:+17021461 | None:intergenic |
| TGAATCTGAAAATGACGACG+AGG | 0.739287 | 1_2:-17023326 | Msa0059740:CDS |
| AGATTTACAAGATAACAACA+AGG | 0.742840 | 1_2:-17023542 | Msa0059740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTTATTTTACTTTTTTG+TGG | - | chr1_2:17023301-17023320 | Msa0059740:CDS | 15.0% |
| !!! | ACTTTTTATGTAACTTTTTT+TGG | - | chr1_2:17023771-17023790 | Msa0059740:CDS | 15.0% |
| !!! | ATTATTAACAATTTTCTATC+AGG | - | chr1_2:17023827-17023846 | Msa0059740:CDS | 15.0% |
| !! | TTCCTTATAAGTTTACTAAT+TGG | + | chr1_2:17022080-17022099 | None:intergenic | 20.0% |
| !! | AATTAGTAAACTTATAAGGA+AGG | - | chr1_2:17022079-17022098 | Msa0059740:intron | 20.0% |
| !!! | AGATATTATCTAAAATTCAG+AGG | - | chr1_2:17022537-17022556 | Msa0059740:intron | 20.0% |
| !!! | ATTTTTCCTTTTACATTACT+TGG | - | chr1_2:17023051-17023070 | Msa0059740:CDS | 20.0% |
| !! | TTGTAATTCCATGTTATTAA+AGG | - | chr1_2:17023160-17023179 | Msa0059740:CDS | 20.0% |
| !!! | GATGTTAAATTTTTGATGTA+AGG | - | chr1_2:17023382-17023401 | Msa0059740:CDS | 20.0% |
| !! | ATAAAAAGTTAAATTCAGCA+AGG | + | chr1_2:17023760-17023779 | None:intergenic | 20.0% |
| !!! | TTTTATGTAACTTTTTTTGG+AGG | - | chr1_2:17023774-17023793 | Msa0059740:CDS | 20.0% |
| !! | CCAAATTTTCTTCATTGTTT+TGG | + | chr1_2:17021404-17021423 | None:intergenic | 25.0% |
| ! | CCAAAACAATGAAGAAAATT+TGG | - | chr1_2:17021401-17021420 | Msa0059740:CDS | 25.0% |
| ! | AATGAAGAAAATTTGGACTT+TGG | - | chr1_2:17021408-17021427 | Msa0059740:CDS | 25.0% |
| ! | TTATGATACTTGATCTTATG+AGG | + | chr1_2:17021645-17021664 | None:intergenic | 25.0% |
| !! | TCAAAAAATGATGATGACTT+AGG | - | chr1_2:17021672-17021691 | Msa0059740:intron | 25.0% |
| ! | AGATTTACAAGATAACAACA+AGG | - | chr1_2:17021827-17021846 | Msa0059740:intron | 25.0% |
| ! | AGTAAGGAAAATTCTGATTT+AGG | - | chr1_2:17021960-17021979 | Msa0059740:intron | 25.0% |
| ! | TGCCAATTAGTAAACTTATA+AGG | - | chr1_2:17022075-17022094 | Msa0059740:intron | 25.0% |
| ! | TTCTTTATAACCTGACTAAT+CGG | + | chr1_2:17022185-17022204 | None:intergenic | 25.0% |
| ! | GCAAGATTCTTATGTAATAA+AGG | + | chr1_2:17022784-17022803 | None:intergenic | 25.0% |
| ! | TTCCATGTTATTAAAGGAAT+AGG | - | chr1_2:17023166-17023185 | Msa0059740:CDS | 25.0% |
| ! | TCCATGTTATTAAAGGAATA+GGG | - | chr1_2:17023167-17023186 | Msa0059740:CDS | 25.0% |
| ! | TGTGAATTTGAACTATCATA+AGG | - | chr1_2:17023260-17023279 | Msa0059740:CDS | 25.0% |
| ! | CAAAAATTTAACATCACAGT+TGG | + | chr1_2:17023377-17023396 | None:intergenic | 25.0% |
| !!! | CTTTAAAATCCTTTATGTTG+TGG | - | chr1_2:17023636-17023655 | Msa0059740:CDS | 25.0% |
| !!! | ATCAGGTTTCTAACATTTTT+TGG | - | chr1_2:17023844-17023863 | Msa0059740:CDS | 25.0% |
| ! | TTGAAATTACAATTTCTCAG+AGG | - | chr1_2:17023867-17023886 | Msa0059740:CDS | 25.0% |
| !!! | CATTTCTTATCATTTTGAGA+AGG | + | chr1_2:17024089-17024108 | None:intergenic | 25.0% |
| ! | CTTCTCAAAATGATAAGAAA+TGG | - | chr1_2:17024087-17024106 | Msa0059740:CDS | 25.0% |
| ! | AAACATTAGCACATTAGTAA+TGG | - | chr1_2:17024132-17024151 | Msa0059740:CDS | 25.0% |
| ! | GAAATTTTGTGAGAAATACC+AGG | + | chr1_2:17021297-17021316 | None:intergenic | 30.0% |
| CTCACAAAATTTCACTAGAT+AGG | - | chr1_2:17021304-17021323 | Msa0059740:three_prime_UTR | 30.0% | |
| AAAATTTCACTAGATAGGCA+AGG | - | chr1_2:17021309-17021328 | Msa0059740:exon | 30.0% | |
| ! | TATTTGCTGCAAATACCAAA+AGG | - | chr1_2:17021442-17021461 | Msa0059740:CDS | 30.0% |
| ! | ATTTTCTCTGTCAACATGTA+CGG | - | chr1_2:17021893-17021912 | Msa0059740:intron | 30.0% |
| ! | CTTACTCTTTTGAGCATAAT+TGG | + | chr1_2:17021946-17021965 | None:intergenic | 30.0% |
| CAATTATGCTCAAAAGAGTA+AGG | - | chr1_2:17021944-17021963 | Msa0059740:intron | 30.0% | |
| !! | TTACGAGTTTGTTTCCTTTT+CGG | + | chr1_2:17022011-17022030 | None:intergenic | 30.0% |
| GTCAGGTTATAAAGAAGAAA+AGG | - | chr1_2:17022189-17022208 | Msa0059740:intron | 30.0% | |
| ! | GTCTTTTGCTTACACATTTT+CGG | + | chr1_2:17022244-17022263 | None:intergenic | 30.0% |
| ! | TCTAAAATTCAGAGGAAGAA+AGG | - | chr1_2:17022545-17022564 | Msa0059740:intron | 30.0% |
| CTAAAATTCAGAGGAAGAAA+GGG | - | chr1_2:17022546-17022565 | Msa0059740:intron | 30.0% | |
| TCATATTCCCACTTAATTTC+CGG | + | chr1_2:17022572-17022591 | None:intergenic | 30.0% | |
| ACATGACCAAGTAATGTAAA+AGG | + | chr1_2:17023060-17023079 | None:intergenic | 30.0% | |
| ! | TTTTACATTACTTGGTCATG+TGG | - | chr1_2:17023059-17023078 | Msa0059740:CDS | 30.0% |
| TCCCTATTCCTTTAATAACA+TGG | + | chr1_2:17023171-17023190 | None:intergenic | 30.0% | |
| ! | AAGGAAACTTTTGTCTCTAT+AGG | - | chr1_2:17023279-17023298 | Msa0059740:CDS | 30.0% |
| CGTAGGTGATGTAAAATATT+AGG | + | chr1_2:17023436-17023455 | None:intergenic | 30.0% | |
| !! | TGCATGCTTTTTGTATATGT+CGG | - | chr1_2:17023517-17023536 | Msa0059740:CDS | 30.0% |
| TGTTGCAAACCTTTATATTG+CGG | - | chr1_2:17023573-17023592 | Msa0059740:CDS | 30.0% | |
| ! | CACATTTTTCCGCAATATAA+AGG | + | chr1_2:17023585-17023604 | None:intergenic | 30.0% |
| CTTTATATTGCGGAAAAATG+TGG | - | chr1_2:17023583-17023602 | Msa0059740:CDS | 30.0% | |
| ! | ATTCTGATTTTCAGTTACAC+AGG | + | chr1_2:17023807-17023826 | None:intergenic | 30.0% |
| ! | GTTTTCTTTAGACCATCATA+AGG | + | chr1_2:17023927-17023946 | None:intergenic | 30.0% |
| !! | TGAGATTTTCAAGAACAAAG+AGG | - | chr1_2:17024028-17024047 | Msa0059740:CDS | 30.0% |
| ! | TACAGAACTAGATTTTGCAC+CGG | + | chr1_2:17021241-17021260 | None:intergenic | 35.0% |
| ! | ACATGTTTTGCCAAAGAAGA+AGG | - | chr1_2:17021354-17021373 | Msa0059740:CDS | 35.0% |
| CAAGTTCTTTCCTTCTTCTT+TGG | + | chr1_2:17021367-17021386 | None:intergenic | 35.0% | |
| CAAAGAAGAAGGAAAGAACT+TGG | - | chr1_2:17021365-17021384 | Msa0059740:CDS | 35.0% | |
| AAGAACTTGGACAACAATCA+TGG | - | chr1_2:17021378-17021397 | Msa0059740:CDS | 35.0% | |
| CTGCAAATACCAAAAGGAAA+CGG | - | chr1_2:17021448-17021467 | Msa0059740:CDS | 35.0% | |
| ! | GAAAGTGATCATGATGATGA+TGG | - | chr1_2:17021498-17021517 | Msa0059740:intron | 35.0% |
| AAGTTGACATTCAAATGCCA+AGG | - | chr1_2:17021553-17021572 | Msa0059740:intron | 35.0% | |
| GAAACTCGTAAGCAAAAATC+AGG | - | chr1_2:17021596-17021615 | Msa0059740:intron | 35.0% | |
| ! | AAATGATGATGACTTAGGAG+TGG | - | chr1_2:17021677-17021696 | Msa0059740:intron | 35.0% |
| GGACAAGTCTAATAGTGATT+TGG | - | chr1_2:17021782-17021801 | Msa0059740:intron | 35.0% | |
| ATGTGCAAGATGTATCTGAT+AGG | - | chr1_2:17021856-17021875 | Msa0059740:intron | 35.0% | |
| ACTTATAAGGAAGGATGTTG+AGG | - | chr1_2:17022088-17022107 | Msa0059740:intron | 35.0% | |
| TCATGAGCATCATCATTTGT+TGG | + | chr1_2:17022293-17022312 | None:intergenic | 35.0% | |
| TGATGAGGATGAATTAGAAG+AGG | - | chr1_2:17022313-17022332 | Msa0059740:intron | 35.0% | |
| AAGTCACAAGACAGATGTAA+CGG | - | chr1_2:17022413-17022432 | Msa0059740:intron | 35.0% | |
| AGATTTACCAGATCGTAACA+AGG | - | chr1_2:17022469-17022488 | Msa0059740:intron | 35.0% | |
| TTTATCGACAGCAAATGCTT+GGG | - | chr1_2:17022654-17022673 | Msa0059740:CDS | 35.0% | |
| CAGATGTATGAGGAAACATT+TGG | - | chr1_2:17022680-17022699 | Msa0059740:CDS | 35.0% | |
| ! | GAATCTTGCACTTTGTGTTT+TGG | - | chr1_2:17022795-17022814 | Msa0059740:CDS | 35.0% |
| !!! | TTGCACTTTGTGTTTTGGTT+TGG | - | chr1_2:17022800-17022819 | Msa0059740:CDS | 35.0% |
| GAAAGCTACCATTTGATAGA+AGG | + | chr1_2:17022828-17022847 | None:intergenic | 35.0% | |
| ! | TTTTGTGCAAAAGCTTGAAC+TGG | + | chr1_2:17023126-17023145 | None:intergenic | 35.0% |
| AGGAATAGGGAAAATATCAG+AGG | - | chr1_2:17023180-17023199 | Msa0059740:CDS | 35.0% | |
| AATAGGGAAAATATCAGAGG+AGG | - | chr1_2:17023183-17023202 | Msa0059740:CDS | 35.0% | |
| !!! | AAGTCTATTTTGACTGCATG+AGG | - | chr1_2:17023213-17023232 | Msa0059740:CDS | 35.0% |
| !! | ATGCTTTTTGTATATGTCGG+TGG | - | chr1_2:17023520-17023539 | Msa0059740:CDS | 35.0% |
| AAATTGCGACCACAACATAA+AGG | + | chr1_2:17023648-17023667 | None:intergenic | 35.0% | |
| ! | TTATGTTGTGGTCGCAATTT+TGG | - | chr1_2:17023648-17023667 | Msa0059740:CDS | 35.0% |
| TGATGGTCTAAAGAAAACTG+TGG | - | chr1_2:17023929-17023948 | Msa0059740:CDS | 35.0% | |
| TTGGAAGAATATAATCCCGA+AGG | - | chr1_2:17023957-17023976 | Msa0059740:CDS | 35.0% | |
| TCTGCAAATTTCAACTCCTT+CGG | + | chr1_2:17023976-17023995 | None:intergenic | 35.0% | |
| ATTTCACTAGATAGGCAAGG+TGG | - | chr1_2:17021312-17021331 | Msa0059740:exon | 40.0% | |
| CAGGATGATAAAACGTCTTC+AGG | - | chr1_2:17021615-17021634 | Msa0059740:intron | 40.0% | |
| ! | AGTGGATTTGTCATACAGTG+AGG | - | chr1_2:17021695-17021714 | Msa0059740:intron | 40.0% |
| GATTTGTCATACAGTGAGGA+AGG | - | chr1_2:17021699-17021718 | Msa0059740:intron | 40.0% | |
| ATCTTGCGAGCTACTTGAAT+TGG | + | chr1_2:17021811-17021830 | None:intergenic | 40.0% | |
| CAAGATGTATCTGATAGGCA+AGG | - | chr1_2:17021861-17021880 | Msa0059740:intron | 40.0% | |
| AACATGTACGGTAGCAGAAA+GGG | - | chr1_2:17021905-17021924 | Msa0059740:intron | 40.0% | |
| CATGTGCTGTAATTCCGAAA+AGG | - | chr1_2:17021994-17022013 | Msa0059740:intron | 40.0% | |
| TGAATCTGAAAATGACGACG+AGG | - | chr1_2:17022043-17022062 | Msa0059740:intron | 40.0% | |
| ! | TGATGATATGCCGATTAGTC+AGG | - | chr1_2:17022172-17022191 | Msa0059740:intron | 40.0% |
| AGAAGAAAAGGAAAGCGAGT+AGG | - | chr1_2:17022201-17022220 | Msa0059740:intron | 40.0% | |
| !! | ATTTTCGGAGACGCTTTAGA+TGG | + | chr1_2:17022229-17022248 | None:intergenic | 40.0% |
| ! | TGATGATGCTCATGATGATG+AGG | - | chr1_2:17022298-17022317 | Msa0059740:intron | 40.0% |
| AGAGGACATATCAAACAGTG+AGG | - | chr1_2:17022331-17022350 | Msa0059740:intron | 40.0% | |
| GAGGACATATCAAACAGTGA+GGG | - | chr1_2:17022332-17022351 | Msa0059740:intron | 40.0% | |
| TAACAAGGATTCCGATTCAC+AGG | - | chr1_2:17022484-17022503 | Msa0059740:intron | 40.0% | |
| GGATGCAGTGTTATGTATGA+AGG | - | chr1_2:17022619-17022638 | Msa0059740:intron | 40.0% | |
| CTTTATCGACAGCAAATGCT+TGG | - | chr1_2:17022653-17022672 | Msa0059740:CDS | 40.0% | |
| TTATCGACAGCAAATGCTTG+GGG | - | chr1_2:17022655-17022674 | Msa0059740:CDS | 40.0% | |
| TTGTATCTTCTCTACCTACC+TGG | + | chr1_2:17022741-17022760 | None:intergenic | 40.0% | |
| ! | GTTTGGAGCCTTCTATCAAA+TGG | - | chr1_2:17022817-17022836 | Msa0059740:CDS | 40.0% |
| AGTATTGCTAGATGTCACGA+AGG | - | chr1_2:17022871-17022890 | Msa0059740:CDS | 40.0% | |
| TCCTGTTTGATGGAAAACAC+TGG | - | chr1_2:17022956-17022975 | Msa0059740:CDS | 40.0% | |
| ! | TCCAGTGTTTTCCATCAAAC+AGG | + | chr1_2:17022960-17022979 | None:intergenic | 40.0% |
| TGTTTGATGGAAAACACTGG+AGG | - | chr1_2:17022959-17022978 | Msa0059740:CDS | 40.0% | |
| TGGAAAACACTGGAGGATAA+AGG | - | chr1_2:17022966-17022985 | Msa0059740:CDS | 40.0% | |
| TTACATCACCTACGCATGTT+TGG | - | chr1_2:17023442-17023461 | Msa0059740:CDS | 40.0% | |
| TACATCACCTACGCATGTTT+GGG | - | chr1_2:17023443-17023462 | Msa0059740:CDS | 40.0% | |
| GGTCGATACAGTTGAAATTG+TGG | - | chr1_2:17023604-17023623 | Msa0059740:CDS | 40.0% | |
| ! | CACCTCTTTCTGCTGTTTAA+CGG | - | chr1_2:17023696-17023715 | Msa0059740:CDS | 40.0% |
| ! | TCTGCTGTTTAACGGTGTTA+CGG | - | chr1_2:17023704-17023723 | Msa0059740:CDS | 40.0% |
| ACGGCTTCTCAGTATATACA+TGG | - | chr1_2:17023723-17023742 | Msa0059740:CDS | 40.0% | |
| ATTTCTCAGAGGCTGTACTT+TGG | - | chr1_2:17023878-17023897 | Msa0059740:CDS | 40.0% | |
| TTTCTCAGAGGCTGTACTTT+GGG | - | chr1_2:17023879-17023898 | Msa0059740:CDS | 40.0% | |
| ACTGATGACAGTCCTTATGA+TGG | - | chr1_2:17023912-17023931 | Msa0059740:CDS | 40.0% | |
| TGGTCTAAAGAAAACTGTGG+AGG | - | chr1_2:17023932-17023951 | Msa0059740:CDS | 40.0% | |
| AAAGAAAACTGTGGAGGAGT+TGG | - | chr1_2:17023938-17023957 | Msa0059740:CDS | 40.0% | |
| CTGCAAATTTCAACTCCTTC+GGG | + | chr1_2:17023975-17023994 | None:intergenic | 40.0% | |
| TGTGGTAGTCAAGGGAAATT+TGG | + | chr1_2:17024056-17024075 | None:intergenic | 40.0% | |
| !! | GAACTAGATTTTGCACCGGT+GGG | + | chr1_2:17021237-17021256 | None:intergenic | 45.0% |
| ! | AGAACTAGATTTTGCACCGG+TGG | + | chr1_2:17021238-17021257 | None:intergenic | 45.0% |
| ! | ATTGCAAGGCCGTTTCCTTT+TGG | + | chr1_2:17021460-17021479 | None:intergenic | 45.0% |
| TCGCTCATAACGACATTGCA+AGG | + | chr1_2:17021474-17021493 | None:intergenic | 45.0% | |
| AGACGTGTCTGATAAGTCAC+AGG | - | chr1_2:17021761-17021780 | Msa0059740:intron | 45.0% | |
| GTATCTGATAGGCAAGGTAG+TGG | - | chr1_2:17021867-17021886 | Msa0059740:intron | 45.0% | |
| CAACATGTACGGTAGCAGAA+AGG | - | chr1_2:17021904-17021923 | Msa0059740:intron | 45.0% | |
| ACATGTACGGTAGCAGAAAG+GGG | - | chr1_2:17021906-17021925 | Msa0059740:intron | 45.0% | |
| AGTGAGGGAGAAAACTTGAG+TGG | - | chr1_2:17022347-17022366 | Msa0059740:intron | 45.0% | |
| AGACAGATGTAACGGTGATG+TGG | - | chr1_2:17022421-17022440 | Msa0059740:intron | 45.0% | |
| TCGGAATCCTTGTTACGATC+TGG | + | chr1_2:17022479-17022498 | None:intergenic | 45.0% | |
| TTCCGATTCACAGGACGTAT+CGG | - | chr1_2:17022493-17022512 | Msa0059740:intron | 45.0% | |
| ATCCGATACGTCCTGTGAAT+CGG | + | chr1_2:17022498-17022517 | None:intergenic | 45.0% | |
| AATTCAGAGGAAGAAAGGGC+CGG | - | chr1_2:17022550-17022569 | Msa0059740:intron | 45.0% | |
| AGAAAGGGCCGGAAATTAAG+TGG | - | chr1_2:17022561-17022580 | Msa0059740:intron | 45.0% | |
| GAAAGGGCCGGAAATTAAGT+GGG | - | chr1_2:17022562-17022581 | Msa0059740:intron | 45.0% | |
| ACTGACATGCGTGCAGTATT+TGG | - | chr1_2:17022593-17022612 | Msa0059740:intron | 45.0% | |
| CATGCGTGCAGTATTTGGAA+AGG | - | chr1_2:17022598-17022617 | Msa0059740:intron | 45.0% | |
| TTAGCAAGTATGATGCTGCC+AGG | - | chr1_2:17022720-17022739 | Msa0059740:CDS | 45.0% | |
| ACCTTCAACGTCCTGTTTGA+TGG | - | chr1_2:17022946-17022965 | Msa0059740:CDS | 45.0% | |
| TCCATCAAACAGGACGTTGA+AGG | + | chr1_2:17022950-17022969 | None:intergenic | 45.0% | |
| TGTATATGTCGGTGGCAGTA+TGG | - | chr1_2:17023528-17023547 | Msa0059740:CDS | 45.0% | |
| !!! | TGTGGTCGCAATTTTGGTTG+CGG | - | chr1_2:17023654-17023673 | Msa0059740:CDS | 45.0% |
| !! | AAACAGCAGAAAGAGGTGTC+TGG | + | chr1_2:17023694-17023713 | None:intergenic | 45.0% |
| CACCGTTAAACAGCAGAAAG+AGG | + | chr1_2:17023701-17023720 | None:intergenic | 45.0% | |
| CATAAGGACTGTCATCAGTG+AGG | + | chr1_2:17023911-17023930 | None:intergenic | 45.0% | |
| TCTGTTGCTGTGGTAGTCAA+GGG | + | chr1_2:17024064-17024083 | None:intergenic | 45.0% | |
| ATCTGTTGCTGTGGTAGTCA+AGG | + | chr1_2:17024065-17024084 | None:intergenic | 45.0% | |
| TGAGAAGGAATCTGTTGCTG+TGG | + | chr1_2:17024074-17024093 | None:intergenic | 45.0% | |
| ATTGACAGCGACGATGAACC+TGG | - | chr1_2:17021276-17021295 | Msa0059740:three_prime_UTR | 50.0% | |
| TCACTAGATAGGCAAGGTGG+TGG | - | chr1_2:17021315-17021334 | Msa0059740:exon | 50.0% | |
| TACGGTAGCAGAAAGGGGAA+AGG | - | chr1_2:17021911-17021930 | Msa0059740:intron | 50.0% | |
| GATTCACAGGACGTATCGGA+TGG | - | chr1_2:17022497-17022516 | Msa0059740:intron | 50.0% | |
| GCTTGGGGAACAGATGTATG+AGG | - | chr1_2:17022670-17022689 | Msa0059740:CDS | 50.0% | |
| GAGGAAACATTTGGCCGTGA+CGG | - | chr1_2:17022689-17022708 | Msa0059740:CDS | 50.0% | |
| AGGAAACATTTGGCCGTGAC+GGG | - | chr1_2:17022690-17022709 | Msa0059740:CDS | 50.0% | |
| CAAGTATGATGCTGCCAGGT+AGG | - | chr1_2:17022724-17022743 | Msa0059740:CDS | 50.0% | |
| GCTCAATCCCAAACATGCGT+AGG | + | chr1_2:17023453-17023472 | None:intergenic | 50.0% | |
| ! | TCAGAGGCTGTACTTTGGGA+GGG | - | chr1_2:17023883-17023902 | Msa0059740:CDS | 50.0% |
| GCAGCATCTACTACACCCAC+CGG | - | chr1_2:17021219-17021238 | Msa0059740:three_prime_UTR | 55.0% | |
| TGCTAAATCCACGCCCGTCA+CGG | + | chr1_2:17022706-17022725 | None:intergenic | 55.0% | |
| CTCAGAGGCTGTACTTTGGG+AGG | - | chr1_2:17023882-17023901 | Msa0059740:CDS | 55.0% | |
| CGAGTCTGTAGACGACGCCT+TGG | + | chr1_2:17021573-17021592 | None:intergenic | 60.0% | |
| GGCGTCGTCTACAGACTCGA+AGG | - | chr1_2:17021574-17021593 | Msa0059740:intron | 60.0% | |
| !! | ACATTTGGCCGTGACGGGCG+TGG | - | chr1_2:17022695-17022714 | Msa0059740:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 17021216 | 17024175 | 17021216 | ID=Msa0059740;Name=Msa0059740 |
| chr1_2 | mRNA | 17021216 | 17024175 | 17021216 | ID=Msa0059740-mRNA-1;Parent=Msa0059740;Name=Msa0059740-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|1|0.5|1|1|1|2|108|568 |
| chr1_2 | exon | 17021216 | 17021504 | 17021216 | ID=Msa0059740-mRNA-1:exon:6687;Parent=Msa0059740-mRNA-1 |
| chr1_2 | exon | 17022650 | 17024175 | 17022650 | ID=Msa0059740-mRNA-1:exon:6686;Parent=Msa0059740-mRNA-1 |
| chr1_2 | CDS | 17022650 | 17024175 | 17022650 | ID=Msa0059740-mRNA-1:cds;Parent=Msa0059740-mRNA-1 |
| chr1_2 | CDS | 17021324 | 17021504 | 17021324 | ID=Msa0059740-mRNA-1:cds;Parent=Msa0059740-mRNA-1 |
| chr1_2 | three_prime_UTR | 17021216 | 17021323 | 17021216 | ID=Msa0059740-mRNA-1:three_prime_utr;Parent=Msa0059740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
