AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0574390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0574390 MtrunA17_Chr8g0390851 99.561 683 1 1 1 681 1 683 0.0 1370
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0574390 AT3G18480.1 79.595 691 129 3 1 681 1 689 0.0 1100

Find 136 sgRNAs with CRISPR-Local

Find 532 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCCGTCGTCTCCGCTTTC+TGG 0.108455 4_1:-77838983 Msa0574390:CDS
TCGATCTACCGAACCATTTC+TGG 0.144277 4_1:+77839195 None:intergenic
CTGGAGCAAAATGAAAATTT+TGG 0.179567 4_1:+77829989 None:intergenic
GAAAGTTCCTTTATGATCTT+TGG 0.215035 4_1:+77832376 None:intergenic
AGAGAACCTGATTAACATTT+AGG 0.224866 4_1:-77830059 Msa0574390:three_prime_UTR
TTCACATTTAACAGGAAATA+AGG 0.255632 4_1:-77831731 Msa0574390:intron
CGAGCACAAACAATGCTTCT+TGG 0.272686 4_1:-77836128 Msa0574390:CDS
CATTCATCGGTAACAGAAAA+TGG 0.290925 4_1:-77839051 Msa0574390:exon
AGGCAGTTGAAGGAGAAAAT+TGG 0.293467 4_1:-77831711 Msa0574390:CDS
TTCAGAGATTAACTTCTCTT+TGG 0.299122 4_1:+77834332 None:intergenic
TGCCTTGCTTAAGGGGTATC+AGG 0.303133 4_1:-77838087 Msa0574390:CDS
GATACAAGGAGTTGGGATTC+AGG 0.303649 4_1:-77830730 Msa0574390:CDS
GGCAGTTGAAGGAGAAAATT+GGG 0.322531 4_1:-77831710 Msa0574390:CDS
TGAGCTTTGATCTTGATCTA+AGG 0.357904 4_1:+77831931 None:intergenic
TGTCAGCTTTGAGTTATCTA+AGG 0.361924 4_1:-77830396 Msa0574390:intron
AAGTATCCTAAATGTTAATC+AGG 0.364384 4_1:+77830053 None:intergenic
TTGTTTAATGCCTTGCTTAA+GGG 0.370199 4_1:-77838095 Msa0574390:CDS
ACAAACAATGCTTCTTGGTT+TGG 0.373165 4_1:-77836123 Msa0574390:CDS
TTCTTCACGTTCATTTGATA+AGG 0.377695 4_1:+77834278 None:intergenic
AACTTCATCCATCAGGAGAT+TGG 0.381423 4_1:+77836154 None:intergenic
TCCTTTATGATCTTTGGAAC+TGG 0.384238 4_1:+77832382 None:intergenic
TGAAATCATGGTTAAATGTA+TGG 0.385380 4_1:+77830083 None:intergenic
TTTGTTTAATGCCTTGCTTA+AGG 0.387765 4_1:-77838096 Msa0574390:CDS
TATAAAAGAATGCAAAAGTT+CGG 0.398780 4_1:+77830461 None:intergenic
GGCAATGAAGAAAGAGCTTC+AGG 0.400714 4_1:-77833214 Msa0574390:CDS
CACTGCAATGCTTAATGAAA+AGG 0.405025 4_1:-77834232 Msa0574390:intron
AAGTAGGCAATTAGAGCAAC+AGG 0.405707 4_1:-77836832 Msa0574390:intron
GCAGTCAGAGAGATCGATTT+AGG 0.415746 4_1:-77831892 Msa0574390:CDS
ATAAAAGAATGCAAAAGTTC+GGG 0.416558 4_1:+77830462 None:intergenic
TACAATCGGGTTGCATGTCT+TGG 0.416848 4_1:-77830440 Msa0574390:CDS
CAACACCTTCTTAGAACCCC+TGG 0.427405 4_1:+77831590 None:intergenic
GGGATCTATCAGAGGCTAAT+CGG 0.429590 4_1:-77832343 Msa0574390:CDS
CTCTTCAAGTCTTCGTATTG+TGG 0.446914 4_1:+77836857 None:intergenic
CTCGTTCAACTTCATCCATC+AGG 0.450947 4_1:+77836147 None:intergenic
AGAGAAAGTAAAAGAAATTG+TGG 0.451660 4_1:-77836704 Msa0574390:CDS
AAGGAACTTTCCTTGATGAC+TGG 0.453666 4_1:-77832364 Msa0574390:CDS
TCCAGTTCCAAAGATCATAA+AGG 0.457304 4_1:-77832383 Msa0574390:CDS
ATTCAATTGAGGCTGAAGAC+TGG 0.460183 4_1:-77833020 Msa0574390:CDS
TTTCTTTAGCACTCTGCAGC+TGG 0.464259 4_1:+77836455 None:intergenic
AAAGCGGAGACGACGGAGAT+CGG 0.467188 4_1:+77838987 None:intergenic
TAAATGTATGGACACGACTC+TGG 0.467551 4_1:+77830095 None:intergenic
GCAGATAATGTTAAACTGTA+CGG 0.472098 4_1:-77831657 Msa0574390:CDS
GTCGTCTCCGCTTTCTGGAA+AGG 0.473696 4_1:-77838978 Msa0574390:intron
TCAGGTTCTCTATGAAATCA+TGG 0.474018 4_1:+77830071 None:intergenic
GCAAGAGCTGGATAAGGATC+TGG 0.474947 4_1:+77837984 None:intergenic
ACAGGAAATAAGGCAGTTGA+AGG 0.475055 4_1:-77831721 Msa0574390:intron
CGATCTACCGAACCATTTCT+GGG 0.475798 4_1:+77839196 None:intergenic
TTTGAACTCCGTGCTCAGTC+TGG 0.477470 4_1:-77836385 Msa0574390:intron
ATACAAGGAGTTGGGATTCA+GGG 0.479433 4_1:-77830729 Msa0574390:CDS
CATATAGTAACTCCCAGAAA+TGG 0.482045 4_1:-77839208 Msa0574390:five_prime_UTR
GATCAAAGATACAAGGAGTT+GGG 0.483830 4_1:-77830737 Msa0574390:CDS
GAGCACGGAGTTCAAACAAC+TGG 0.486238 4_1:+77836392 None:intergenic
GGTTTCCAGGGGTTCTAAGA+AGG 0.490914 4_1:-77831595 Msa0574390:intron
AACTCACTTGAAGAATCAAC+AGG 0.495755 4_1:-77836880 Msa0574390:CDS
TGTTTAATGCCTTGCTTAAG+GGG 0.498851 4_1:-77838094 Msa0574390:CDS
AGATCAAAGATACAAGGAGT+TGG 0.502305 4_1:-77830738 Msa0574390:CDS
AGAATTTGTTATTCATTCAT+CGG 0.503694 4_1:-77839064 Msa0574390:five_prime_UTR
CAGATAATGTTAAACTGTAC+GGG 0.503919 4_1:-77831656 Msa0574390:CDS
AAACAAACTTGACTTATCCT+CGG 0.505879 4_1:+77838112 None:intergenic
CCGAGCTAGAATCTGAGAAC+CGG 0.509206 4_1:-77836941 Msa0574390:CDS
ACTGAGGCAAGAGCTGGATA+AGG 0.510141 4_1:+77837978 None:intergenic
CTGATAGATCCCAGTCATCA+AGG 0.512241 4_1:+77832354 None:intergenic
AGCAGCGGACGATTTCTTCT+CGG 0.512425 4_1:-77830692 Msa0574390:CDS
AACAAACTTGACTTATCCTC+GGG 0.514878 4_1:+77838113 None:intergenic
GCTCATCTCCTCCCCACTTG+TGG 0.514899 4_1:+77832990 None:intergenic
TTCAATTGAGGCTGAAGACT+GGG 0.516424 4_1:-77833019 Msa0574390:CDS
TCCCTCTCCGATCCACTTGG+CGG 0.520914 4_1:+77839023 None:intergenic
CCGGTTCTCAGATTCTAGCT+CGG 0.521831 4_1:+77836941 None:intergenic
AGTAACTCCCAGAAATGGTT+CGG 0.523830 4_1:-77839203 Msa0574390:five_prime_UTR
AGCTGACATTCTGTAGAGAC+AGG 0.526667 4_1:+77830411 None:intergenic
GCTACGAGATTTCACCAAAT+CGG 0.532622 4_1:+77839123 None:intergenic
TCATTACATTAAACGACCAC+TGG 0.534417 4_1:+77830216 None:intergenic
ACACGAGCTAACACAGTTGA+AGG 0.534521 4_1:-77832926 Msa0574390:intron
AGGAACTTTCCTTGATGACT+GGG 0.534962 4_1:-77832363 Msa0574390:CDS
GCTTAAGGGGTATCAGGAAG+AGG 0.536160 4_1:-77838081 Msa0574390:CDS
GGCTCAGATGAAACACTGGC+TGG 0.536356 4_1:-77830291 Msa0574390:CDS
GATATAGGAGGCTTCTATTG+TGG 0.539708 4_1:-77833235 Msa0574390:intron
TTGCAGGGAACAATTACTAC+AGG 0.540685 4_1:-77836479 Msa0574390:intron
GACTGGGAAGTGGCCACAAG+TGG 0.542533 4_1:-77833003 Msa0574390:CDS
GTGTCCCTCTCCGATCCACT+TGG 0.542837 4_1:+77839020 None:intergenic
CAGTCCACGTGGAAGATCAA+TGG 0.546836 4_1:+77830260 None:intergenic
GGTGGCAGAACTTTCAGCTA+AGG 0.546982 4_1:-77832584 Msa0574390:CDS
GAAGACTTGAAGAGCGAAGT+AGG 0.548247 4_1:-77836848 Msa0574390:CDS
ACAGCAACTGAGGCAAGAGC+TGG 0.549391 4_1:+77837972 None:intergenic
GGAGTCTCCGCCAAGTGGAT+CGG 0.552009 4_1:-77839030 Msa0574390:CDS
TATGCAGAAGATCTTGAAAG+TGG 0.552427 4_1:-77831472 Msa0574390:CDS
AGTGGGTTATAATTCAATTG+AGG 0.558132 4_1:-77833031 Msa0574390:CDS
AATCAGACCTTTCCAGAAAG+CGG 0.559556 4_1:+77838971 None:intergenic
ATCTTCCACGTGGACTGTAG+TGG 0.562365 4_1:-77830254 Msa0574390:exon
ATCATCAGAATATGGATCAA+AGG 0.565231 4_1:-77831958 Msa0574390:intron
AGAGGCGATTTCTAGTGTAA+AGG 0.569008 4_1:-77830126 Msa0574390:three_prime_UTR
GTTGGAAGATGATATATCCA+AGG 0.569133 4_1:-77832533 Msa0574390:intron
TCCGCCAAGTGGATCGGAGA+GGG 0.574061 4_1:-77839024 Msa0574390:CDS
GACGACGGAGATCGGAGAGT+TGG 0.574510 4_1:+77838995 None:intergenic
ACTCGAAACAGCCGAGCAGA+AGG 0.575671 4_1:-77832605 Msa0574390:CDS
GGAAGTGGCCACAAGTGGGG+AGG 0.576452 4_1:-77832998 Msa0574390:CDS
TCTTGGTTTGGAGAGAGAGA+AGG 0.577076 4_1:-77836111 Msa0574390:intron
TGAGGCTGAAGACTGGGAAG+TGG 0.578334 4_1:-77833013 Msa0574390:CDS
CTGGGAAGTGGCCACAAGTG+GGG 0.580493 4_1:-77833001 Msa0574390:CDS
TTTGATTACCAGACTGAGCA+CGG 0.583328 4_1:+77836377 None:intergenic
TGGGGAGGAGATGAGCAAGA+TGG 0.591522 4_1:-77832983 Msa0574390:CDS
AAGACACGCGACAGATAAGT+AGG 0.593563 4_1:+77830012 None:intergenic
GGAAAGAGATCAAAGATACA+AGG 0.597550 4_1:-77830744 Msa0574390:CDS
GAAAATGAAAGTTGAGCTTG+AGG 0.599598 4_1:-77836919 Msa0574390:CDS
AAGATTCTGAAACTAAGAAG+AGG 0.601242 4_1:-77835407 Msa0574390:intron
CGAAACAGCCGAGCAGAAGG+TGG 0.605027 4_1:-77832602 Msa0574390:CDS
TGGTCATACATTCAGGCAGT+GGG 0.605843 4_1:-77833048 Msa0574390:intron
TCTTCCACGTGGACTGTAGT+GGG 0.607239 4_1:-77830253 Msa0574390:exon
AGCAGAGGCCAATCTCCTGA+TGG 0.608030 4_1:-77836162 Msa0574390:CDS
AAGTTCTGCCACCTTCTGCT+CGG 0.610438 4_1:+77832594 None:intergenic
GAGGGCAGCTAAGCAAGCAG+AGG 0.612345 4_1:-77836177 Msa0574390:CDS
TTTCCAGAAAGCGGAGACGA+CGG 0.616138 4_1:+77838980 None:intergenic
AAATCTGTGTTAGATGAACA+AGG 0.616404 4_1:-77838302 Msa0574390:CDS
TAATCGGAGTGAGGTGTCTG+AGG 0.620394 4_1:-77832327 Msa0574390:intron
TCATGGCTCAGATGAAACAC+TGG 0.624075 4_1:-77830295 Msa0574390:CDS
AGAGATACAGAGAGAAGACA+TGG 0.624564 4_1:-77839157 Msa0574390:five_prime_UTR
GCTTGAGGAATTTAGAACAG+AGG 0.635432 4_1:-77836904 Msa0574390:CDS
GTTAATCTCTGAATTGAACA+TGG 0.637889 4_1:-77834322 Msa0574390:CDS
ACTGGGAAGTGGCCACAAGT+GGG 0.638410 4_1:-77833002 Msa0574390:CDS
GACAGAATCACACTCAGCAG+CGG 0.644787 4_1:-77830707 Msa0574390:CDS
TGATGACTGGGATCTATCAG+AGG 0.646009 4_1:-77832351 Msa0574390:CDS
TTCCTGATACCCCTTAAGCA+AGG 0.649337 4_1:+77838085 None:intergenic
AAAATGGAGTCTCCGCCAAG+TGG 0.659317 4_1:-77839035 Msa0574390:CDS
ACGCTTGAGAGAGACAGAAG+AGG 0.662085 4_1:-77831867 Msa0574390:intron
ATCAGAGGCTAATCGGAGTG+AGG 0.670414 4_1:-77832336 Msa0574390:CDS
GGTATACAATCTACTTCCAG+TGG 0.675971 4_1:-77830232 Msa0574390:three_prime_UTR
GCTGGAACTCACAGCAACTG+AGG 0.677059 4_1:+77837962 None:intergenic
TAAGCATCGCAATCTAGCAG+AGG 0.677217 4_1:-77836677 Msa0574390:CDS
TTTCAAGAAAGCTTCACCCG+AGG 0.686730 4_1:-77838129 Msa0574390:CDS
AATCTGTGTTAGATGAACAA+GGG 0.690995 4_1:-77838301 Msa0574390:CDS
GCAGTTGAAGGAGAAAATTG+GGG 0.693185 4_1:-77831709 Msa0574390:CDS
CTCCGCCAAGTGGATCGGAG+AGG 0.701318 4_1:-77839025 Msa0574390:CDS
GAAAATTGGGGTATTAACAG+CGG 0.709114 4_1:-77831697 Msa0574390:CDS
AGAACCATTGATCTTCCACG+TGG 0.765127 4_1:-77830264 Msa0574390:CDS
AAAATACAAGAAGATATACG+AGG 0.768531 4_1:-77831428 Msa0574390:CDS
TATACCCACTACAGTCCACG+TGG 0.774860 4_1:+77830249 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAATAGAAATTAAGTA+TGG + chr4_1:77830327-77830346 None:intergenic 10.0%
!!! TAAAATTTTTAAGTAATGAA+GGG - chr4_1:77830687-77830706 Msa0574390:CDS 10.0%
!! GATTAATAAATAAAATACTT+AGG + chr4_1:77836822-77836841 None:intergenic 10.0%
!! ATAATTAATGAAAACTAATT+AGG + chr4_1:77837093-77837112 None:intergenic 10.0%
!! TAATTTATATCTAAACTATA+AGG - chr4_1:77838160-77838179 Msa0574390:intron 10.0%
!!! AAATAGTTTTGAAAAGAAAT+GGG - chr4_1:77829994-77830013 Msa0574390:three_prime_UTR 15.0%
!! AAGCTTACTTAAATAAAAAT+TGG - chr4_1:77830529-77830548 Msa0574390:intron 15.0%
!! TACTTAAATAAAAATTGGAT+CGG - chr4_1:77830534-77830553 Msa0574390:intron 15.0%
!!! GTAAAATTTTTAAGTAATGA+AGG - chr4_1:77830686-77830705 Msa0574390:CDS 15.0%
!! CTGTAAAAAAATTATGAAAT+GGG - chr4_1:77830764-77830783 Msa0574390:intron 15.0%
!! AATTGTATATTTCTTTGTAT+AGG - chr4_1:77832274-77832293 Msa0574390:intron 15.0%
!!! TTAAAATTTCTAATGTTTTC+TGG + chr4_1:77832609-77832628 None:intergenic 15.0%
!!! CATTAGAAATTTTAAAAGAA+AGG - chr4_1:77832614-77832633 Msa0574390:CDS 15.0%
!!! TTTTTTCCAACAATTATTTT+TGG + chr4_1:77834154-77834173 None:intergenic 15.0%
!! AAAAAAAATTATATTGCCTT+GGG - chr4_1:77834205-77834224 Msa0574390:intron 15.0%
!!! AATAATCTTTTTCAAAAACT+TGG + chr4_1:77834599-77834618 None:intergenic 15.0%
!!! AGTTTTTGAAAAAGATTATT+TGG - chr4_1:77834599-77834618 Msa0574390:intron 15.0%
!! GACTTAATAAATTGAAATAT+CGG + chr4_1:77835085-77835104 None:intergenic 15.0%
!!! TATATATTAGGTTTTATGTT+GGG + chr4_1:77835698-77835717 None:intergenic 15.0%
!!! ATCATTGATTTATAATAATG+AGG - chr4_1:77836357-77836376 Msa0574390:intron 15.0%
!! TTAGTTTCTTAAAAATATTG+TGG + chr4_1:77836396-77836415 None:intergenic 15.0%
!! TAATAAATAAAATACTTAGG+AGG + chr4_1:77836819-77836838 None:intergenic 15.0%
!!! AAAACTAATTAGGTTTTATA+GGG + chr4_1:77837083-77837102 None:intergenic 15.0%
!!! TTAGTTTTCATTAATTATCT+TGG - chr4_1:77837095-77837114 Msa0574390:intron 15.0%
!!! TAGTTTTCATTAATTATCTT+GGG - chr4_1:77837096-77837115 Msa0574390:intron 15.0%
!! TTTATAGTTAATATTGGTAT+AGG - chr4_1:77837416-77837435 Msa0574390:intron 15.0%
!!! ATTTTAGACAAAAATTAATG+TGG + chr4_1:77837974-77837993 None:intergenic 15.0%
!! TATAAAAAATTCCATTTAGA+AGG + chr4_1:77838639-77838658 None:intergenic 15.0%
!! TTAAAAAACAAAACAATATC+TGG + chr4_1:77838709-77838728 None:intergenic 15.0%
!!! AGAATTTGTTATTCATTCAT+CGG - chr4_1:77830192-77830211 Msa0574390:three_prime_UTR 20.0%
!!! CCATTTCATAATTTTTTTAC+AGG + chr4_1:77830766-77830785 None:intergenic 20.0%
!! CCTGTAAAAAAATTATGAAA+TGG - chr4_1:77830763-77830782 Msa0574390:intron 20.0%
!! TAAAAAAATTATGAAATGGG+AGG - chr4_1:77830767-77830786 Msa0574390:intron 20.0%
!! TAAACATATGTACATCTAAA+TGG + chr4_1:77831570-77831589 None:intergenic 20.0%
!!! TATCTACATATTCTAGTTAA+TGG - chr4_1:77832085-77832104 Msa0574390:intron 20.0%
!! AATTCTTGGAAACAAATAAA+AGG + chr4_1:77832157-77832176 None:intergenic 20.0%
!! AAATGAAAAAGTAAATAGCT+TGG + chr4_1:77832254-77832273 None:intergenic 20.0%
!! ACATTTAAACTTGTAATAGA+TGG - chr4_1:77832528-77832547 Msa0574390:intron 20.0%
!!! AATCAAATAGTTTTCAAATC+TGG - chr4_1:77832895-77832914 Msa0574390:intron 20.0%
!!! ATCAAATAGTTTTCAAATCT+GGG - chr4_1:77832896-77832915 Msa0574390:intron 20.0%
!! AATAGCAATGCAAATTAATT+AGG - chr4_1:77833477-77833496 Msa0574390:intron 20.0%
!! TTTCACAAAATTAAGAAACA+TGG + chr4_1:77833604-77833623 None:intergenic 20.0%
!! ATTTATTTCACTCAATTAGT+GGG + chr4_1:77833714-77833733 None:intergenic 20.0%
!! TATTTATTTCACTCAATTAG+TGG + chr4_1:77833715-77833734 None:intergenic 20.0%
!! TCTAAAAAGAAAAAAAGACA+AGG + chr4_1:77833884-77833903 None:intergenic 20.0%
!! AAAAATCTGAGTACAATTTA+TGG - chr4_1:77834169-77834188 Msa0574390:intron 20.0%
!! AAAATCTGAGTACAATTTAT+GGG - chr4_1:77834170-77834189 Msa0574390:intron 20.0%
!! GAAAAAAAATTATATTGCCT+TGG - chr4_1:77834204-77834223 Msa0574390:intron 20.0%
!! AGATTTGTGATAATATGTTT+CGG + chr4_1:77834336-77834355 None:intergenic 20.0%
!! ATACAAATTAGTCATCATTT+AGG - chr4_1:77834376-77834395 Msa0574390:CDS 20.0%
!!! AAAATTTGCTTGAATTCATT+TGG + chr4_1:77834472-77834491 None:intergenic 20.0%
!!! AATGAATTCAAGCAAATTTT+TGG - chr4_1:77834472-77834491 Msa0574390:intron 20.0%
!! AATAAAAATATGTTTCCACT+TGG - chr4_1:77834525-77834544 Msa0574390:intron 20.0%
!! ATAGATAAAGGAAAATAAAG+AGG + chr4_1:77835111-77835130 None:intergenic 20.0%
!! AATCAGATCAAAATAGATAA+AGG + chr4_1:77835123-77835142 None:intergenic 20.0%
!!! TATATGGGATCAAAATTTTT+GGG + chr4_1:77835234-77835253 None:intergenic 20.0%
!!! ATATATGGGATCAAAATTTT+TGG + chr4_1:77835235-77835254 None:intergenic 20.0%
!!! AATTTTGATCCCATATATTT+TGG - chr4_1:77835237-77835256 Msa0574390:intron 20.0%
!!! ATTTTGATCCCATATATTTT+GGG - chr4_1:77835238-77835257 Msa0574390:intron 20.0%
!!! ACACATGATTTTTATTGATT+TGG + chr4_1:77835605-77835624 None:intergenic 20.0%
!! AATCAATAAAAATCATGTGT+AGG - chr4_1:77835605-77835624 Msa0574390:intron 20.0%
!!! ATATATTAGGTTTTATGTTG+GGG + chr4_1:77835697-77835716 None:intergenic 20.0%
!!! CTATATATTAGGTTTTATGT+TGG + chr4_1:77835699-77835718 None:intergenic 20.0%
!!! TTTTATGTAACATCTTGTTT+TGG - chr4_1:77836154-77836173 Msa0574390:CDS 20.0%
!!! TTTATGTAACATCTTGTTTT+GGG - chr4_1:77836155-77836174 Msa0574390:CDS 20.0%
!! TTTCTTAAAAATATTGTGGA+TGG + chr4_1:77836392-77836411 None:intergenic 20.0%
!!! CACATAATTTTGACTATATT+TGG - chr4_1:77836438-77836457 Msa0574390:CDS 20.0%
!!! GTTGATGAAATTATGATATT+TGG + chr4_1:77837016-77837035 None:intergenic 20.0%
!!! GAAAACTAATTAGGTTTTAT+AGG + chr4_1:77837084-77837103 None:intergenic 20.0%
!! GGTATGTTTATAGTTAATAT+TGG - chr4_1:77837410-77837429 Msa0574390:intron 20.0%
!!! TTTTTATTTTAATATGACGG+TGG - chr4_1:77837488-77837507 Msa0574390:intron 20.0%
!!! ATCTAGTTTTTATCTTCAAT+TGG - chr4_1:77837734-77837753 Msa0574390:intron 20.0%
!! AAAATAAAATGCTTCACTTA+GGG + chr4_1:77837918-77837937 None:intergenic 20.0%
!! AAAAATAAAATGCTTCACTT+AGG + chr4_1:77837919-77837938 None:intergenic 20.0%
!!! AATTTTATAGACTTTGAATG+TGG + chr4_1:77838005-77838024 None:intergenic 20.0%
!! CTAACATGTATATTTATGAA+TGG + chr4_1:77838262-77838281 None:intergenic 20.0%
!!! GGAATTTTTTATATCGTTTA+TGG - chr4_1:77838646-77838665 Msa0574390:intron 20.0%
!! TGATTAAAATTATGCTTTAC+AGG - chr4_1:77838767-77838786 Msa0574390:intron 20.0%
!! TATAAAAGAATGCAAAAGTT+CGG + chr4_1:77838798-77838817 None:intergenic 20.0%
!!! TTTGCATTCTTTTATACAAT+CGG - chr4_1:77838802-77838821 Msa0574390:intron 20.0%
! GAAAATAAGCAAAAACTAAG+AGG - chr4_1:77830023-77830042 Msa0574390:three_prime_UTR 25.0%
!!! TTCTACTGTTATTTTTGCTT+CGG - chr4_1:77830366-77830385 Msa0574390:intron 25.0%
! TTGATGCATTACTTCAAAAT+TGG - chr4_1:77830486-77830505 Msa0574390:intron 25.0%
! CATTTCAATGAAATTCTCTT+TGG + chr4_1:77830728-77830747 None:intergenic 25.0%
! GAGAATTTCATTGAAATGAA+TGG - chr4_1:77830730-77830749 Msa0574390:CDS 25.0%
! TTTGAACCTGATTTAGTAAA+TGG - chr4_1:77830824-77830843 Msa0574390:intron 25.0%
! TTTAGACCATTTACTAAATC+AGG + chr4_1:77830833-77830852 None:intergenic 25.0%
!! TATTTTTCTGACTGTTTTCT+TGG + chr4_1:77830998-77831017 None:intergenic 25.0%
! AAGAAAACAGTCAGAAAAAT+AGG - chr4_1:77830997-77831016 Msa0574390:intron 25.0%
!!! TCACTGTTATTTCCAAATTT+TGG - chr4_1:77831059-77831078 Msa0574390:intron 25.0%
! AAAAATGCATTAAGATTGAC+AGG + chr4_1:77831364-77831383 None:intergenic 25.0%
! TTAAGAACTTACGTTTGTAT+TGG - chr4_1:77831419-77831438 Msa0574390:CDS 25.0%
!! GACTCAATTCTTTTAAATTG+CGG - chr4_1:77831509-77831528 Msa0574390:intron 25.0%
!! ACTCAATTCTTTTAAATTGC+GGG - chr4_1:77831510-77831529 Msa0574390:intron 25.0%
! TCATTAATTATCACACCATA+CGG + chr4_1:77831678-77831697 None:intergenic 25.0%
! ATAGAAATTGCTCAACATTA+GGG + chr4_1:77831909-77831928 None:intergenic 25.0%
! AATAGAAATTGCTCAACATT+AGG + chr4_1:77831910-77831929 None:intergenic 25.0%
! ATAGACGACAGTTAATATTT+AGG + chr4_1:77832054-77832073 None:intergenic 25.0%
!! TTTTACAGGATTATAGACAA+CGG - chr4_1:77832123-77832142 Msa0574390:intron 25.0%
! AAATGTCAAATAGAAATCAG+TGG + chr4_1:77832514-77832533 None:intergenic 25.0%
! AGAGAAAGTAAAAGAAATTG+TGG - chr4_1:77832552-77832571 Msa0574390:CDS 25.0%
! AAGCAATAATAACTTAGAGA+AGG + chr4_1:77832731-77832750 None:intergenic 25.0%
! TTTCAAAATGAAGAAAGAGA+AGG + chr4_1:77832993-77833012 None:intergenic 25.0%
! TACAAAACAATACAGGTAAA+GGG + chr4_1:77833191-77833210 None:intergenic 25.0%
! ATACAAAACAATACAGGTAA+AGG + chr4_1:77833192-77833211 None:intergenic 25.0%
! ATCTTATTGCTTATGTCTAT+GGG + chr4_1:77833235-77833254 None:intergenic 25.0%
! AATCTTATTGCTTATGTCTA+TGG + chr4_1:77833236-77833255 None:intergenic 25.0%
! AAGCTTCCTATAAAAAAAGA+TGG + chr4_1:77833276-77833295 None:intergenic 25.0%
! GTAATTAATACAAGACAGTT+TGG + chr4_1:77833335-77833354 None:intergenic 25.0%
!!! TGAAGTAATTAAGGGTATTT+TGG + chr4_1:77833369-77833388 None:intergenic 25.0%
! AGAGATGATGAAGTAATTAA+GGG + chr4_1:77833377-77833396 None:intergenic 25.0%
! GAATTAATCTTGAAACTAGT+GGG + chr4_1:77833525-77833544 None:intergenic 25.0%
! AGAATTAATCTTGAAACTAG+TGG + chr4_1:77833526-77833545 None:intergenic 25.0%
!!! ACACATAATATTGTTTTTGC+AGG + chr4_1:77833685-77833704 None:intergenic 25.0%
! ATTTGTGTTGTGTTTACTTT+GGG + chr4_1:77833922-77833941 None:intergenic 25.0%
! TATTTGTGTTGTGTTTACTT+TGG + chr4_1:77833923-77833942 None:intergenic 25.0%
! TTCCTACCAAAAATAATTGT+TGG - chr4_1:77834145-77834164 Msa0574390:intron 25.0%
!!! TTCCAACAATTATTTTTGGT+AGG + chr4_1:77834150-77834169 None:intergenic 25.0%
! GAATAAAAGTAGGTAACTTA+TGG + chr4_1:77834254-77834273 None:intergenic 25.0%
!! TACTTGGTTTGAATAAAAGT+AGG + chr4_1:77834264-77834283 None:intergenic 25.0%
! AAAGAAAGATTGATAAATCG+GGG + chr4_1:77834404-77834423 None:intergenic 25.0%
! GAAAGAAAGATTGATAAATC+GGG + chr4_1:77834405-77834424 None:intergenic 25.0%
! GGAAAGAAAGATTGATAAAT+CGG + chr4_1:77834406-77834425 None:intergenic 25.0%
!! TGTTTTCTCTTAGTTTCAAT+TGG - chr4_1:77834638-77834657 Msa0574390:intron 25.0%
!! AATACACCATAAATTTTCTG+TGG - chr4_1:77834716-77834735 Msa0574390:intron 25.0%
! GAAACAGAGAGAAAAAAAAA+GGG + chr4_1:77834813-77834832 None:intergenic 25.0%
! AGAAACAGAGAGAAAAAAAA+AGG + chr4_1:77834814-77834833 None:intergenic 25.0%
!! TCTCTGTTTCTTCTTTAATT+GGG - chr4_1:77834823-77834842 Msa0574390:intron 25.0%
!!! GATCTGATTGTTTTTTGAAA+AGG - chr4_1:77835134-77835153 Msa0574390:intron 25.0%
! CAAACAAACCCAAAATATAT+GGG + chr4_1:77835249-77835268 None:intergenic 25.0%
!! ACGAGACTTTTAATATTGTA+TGG - chr4_1:77835344-77835363 Msa0574390:intron 25.0%
! CACTATGCTTTCTATATATT+AGG + chr4_1:77835710-77835729 None:intergenic 25.0%
! AGTGAAATTTCTATTTGTAC+TGG - chr4_1:77835726-77835745 Msa0574390:intron 25.0%
! GTGAAATTTCTATTTGTACT+GGG - chr4_1:77835727-77835746 Msa0574390:intron 25.0%
! ATCTTAGTGAAATTTACTTC+TGG - chr4_1:77835765-77835784 Msa0574390:intron 25.0%
! TCTTAGTGAAATTTACTTCT+GGG - chr4_1:77835766-77835785 Msa0574390:intron 25.0%
!!! TCATCAACTATTTTTTCAGT+TGG + chr4_1:77836073-77836092 None:intergenic 25.0%
!! CAAGAAAGTAAAAATTTTGC+AGG - chr4_1:77836099-77836118 Msa0574390:intron 25.0%
! ACTCTTCAATTCATTTCAAA+TGG - chr4_1:77836129-77836148 Msa0574390:CDS 25.0%
! ATAACATGTTCAAATACACA+AGG + chr4_1:77836505-77836524 None:intergenic 25.0%
! TTGTGTATTTGAACATGTTA+TGG - chr4_1:77836504-77836523 Msa0574390:intron 25.0%
! TGTGTATTTGAACATGTTAT+GGG - chr4_1:77836505-77836524 Msa0574390:intron 25.0%
! GTCTTATAAAGCAAATAACA+TGG + chr4_1:77836539-77836558 None:intergenic 25.0%
! AATACCTATAGATCATATCA+AGG + chr4_1:77836566-77836585 None:intergenic 25.0%
! ACAAAAACTGATACAAAAGT+TGG - chr4_1:77836705-77836724 Msa0574390:CDS 25.0%
! AGTGATTGATATGGTAATAA+AGG + chr4_1:77836771-77836790 None:intergenic 25.0%
! TCTTCTATTAGTGATTGATA+TGG + chr4_1:77836780-77836799 None:intergenic 25.0%
!! ATGAAAAGCATATTGGAAAA+AGG + chr4_1:77836961-77836980 None:intergenic 25.0%
! CAGTAATAAAACACCAATAT+GGG + chr4_1:77837055-77837074 None:intergenic 25.0%
! ACAGTAATAAAACACCAATA+TGG + chr4_1:77837056-77837075 None:intergenic 25.0%
! GGAAATAATGTCAAATAGAA+AGG + chr4_1:77837461-77837480 None:intergenic 25.0%
!! GTGAATTTTTCACATTTAAC+AGG - chr4_1:77837517-77837536 Msa0574390:intron 25.0%
! TTCACATTTAACAGGAAATA+AGG - chr4_1:77837525-77837544 Msa0574390:intron 25.0%
!!! CTTTTTCAACATTATAGTCT+TGG + chr4_1:77837640-77837659 None:intergenic 25.0%
! AGACTATAATGTTGAAAAAG+TGG - chr4_1:77837640-77837659 Msa0574390:intron 25.0%
! TGAAGATAAAAACTAGATGA+TGG + chr4_1:77837732-77837751 None:intergenic 25.0%
! AAAATACAAGAAGATATACG+AGG - chr4_1:77837828-77837847 Msa0574390:intron 25.0%
! AAGCAATTATGTGAAGAAAA+TGG + chr4_1:77837894-77837913 None:intergenic 25.0%
! AAATAAAATGCTTCACTTAG+GGG + chr4_1:77837917-77837936 None:intergenic 25.0%
! ATGTATGACTTAAGTTATCT+TGG + chr4_1:77838047-77838066 None:intergenic 25.0%
! TTGTCAAAGCAATAAAAAAC+TGG - chr4_1:77838288-77838307 Msa0574390:CDS 25.0%
! TGAATTGCAAGAACTAAAAA+AGG + chr4_1:77838607-77838626 None:intergenic 25.0%
!! AAATCAAAAAGCGTGTTTAT+GGG - chr4_1:77838680-77838699 Msa0574390:intron 25.0%
! ATAAAAGAATGCAAAAGTTC+GGG + chr4_1:77838797-77838816 None:intergenic 25.0%
!! TTGCATTCTTTTATACAATC+GGG - chr4_1:77838803-77838822 Msa0574390:intron 25.0%
!! ATAGCGTTTTATATATAGAG+AGG - chr4_1:77839112-77839131 Msa0574390:five_prime_UTR 25.0%
! TGAAATCATGGTTAAATGTA+TGG + chr4_1:77839176-77839195 None:intergenic 25.0%
! AAGTATCCTAAATGTTAATC+AGG + chr4_1:77839206-77839225 None:intergenic 25.0%
ATAACAAATCACACTGCATT+TGG + chr4_1:77830629-77830648 None:intergenic 30.0%
TCTGTACTAACAAAAGTGAA+AGG - chr4_1:77830869-77830888 Msa0574390:intron 30.0%
CTGTACTAACAAAAGTGAAA+GGG - chr4_1:77830870-77830889 Msa0574390:intron 30.0%
CTCTAAGTCAAAATCTGAAA+GGG + chr4_1:77830928-77830947 None:intergenic 30.0%
TCTCTAAGTCAAAATCTGAA+AGG + chr4_1:77830929-77830948 None:intergenic 30.0%
!!! TTCAGATTTTGACTTAGAGA+AGG - chr4_1:77830929-77830948 Msa0574390:intron 30.0%
AAATCTGTGTTAGATGAACA+AGG - chr4_1:77830954-77830973 Msa0574390:intron 30.0%
AATCTGTGTTAGATGAACAA+GGG - chr4_1:77830955-77830974 Msa0574390:intron 30.0%
AAAACAGTCAGAAAAATAGG+CGG - chr4_1:77831000-77831019 Msa0574390:intron 30.0%
TAGATCAAGTAGCCAAAATT+TGG + chr4_1:77831074-77831093 None:intergenic 30.0%
AAACAAACTTGACTTATCCT+CGG + chr4_1:77831147-77831166 None:intergenic 30.0%
TTTGTTTAATGCCTTGCTTA+AGG - chr4_1:77831160-77831179 Msa0574390:intron 30.0%
TTGTTTAATGCCTTGCTTAA+GGG - chr4_1:77831161-77831180 Msa0574390:intron 30.0%
CTTACAAAAAGAGCAAAGTT+TGG - chr4_1:77831206-77831225 Msa0574390:intron 30.0%
! ACAGCTTTTGATAGATGTTA+AGG + chr4_1:77831244-77831263 None:intergenic 30.0%
!!! AAATTGCGGGAGATTTTTTA+TGG - chr4_1:77831523-77831542 Msa0574390:intron 30.0%
ATCTGTGTAGATCAAGAAAA+GGG - chr4_1:77831611-77831630 Msa0574390:CDS 30.0%
CAGAAATTAATTGCATTTGC+AGG - chr4_1:77831704-77831723 Msa0574390:CDS 30.0%
TGATTGAAATTGTCAAGTGA+AGG + chr4_1:77831773-77831792 None:intergenic 30.0%
GATGGTTATATGGAATTTGA+TGG + chr4_1:77831825-77831844 None:intergenic 30.0%
AAATTTCCTATAGCACCTTT+AGG + chr4_1:77832001-77832020 None:intergenic 30.0%
AACTGTCGTCTATTTGTTTA+TGG - chr4_1:77832061-77832080 Msa0574390:intron 30.0%
! TTCTAGTTAATGGTGATATG+TGG - chr4_1:77832095-77832114 Msa0574390:intron 30.0%
CATGCTAAGAAGAAAATTCT+TGG + chr4_1:77832171-77832190 None:intergenic 30.0%
AATAGAGGAATCAATAGTCT+TGG + chr4_1:77832755-77832774 None:intergenic 30.0%
! CACGTAAATGATATTTTCAG+AGG - chr4_1:77833052-77833071 Msa0574390:intron 30.0%
TCACTGATACAAAACAATAC+AGG + chr4_1:77833198-77833217 None:intergenic 30.0%
!!! CTACCACCATCTTTTTTTAT+AGG - chr4_1:77833267-77833286 Msa0574390:intron 30.0%
CTTCCTATAAAAAAAGATGG+TGG + chr4_1:77833273-77833292 None:intergenic 30.0%
TGGAAGGAGACTTATAAAAA+GGG + chr4_1:77833315-77833334 None:intergenic 30.0%
TTGGAAGGAGACTTATAAAA+AGG + chr4_1:77833316-77833335 None:intergenic 30.0%
TTAATACAAGACAGTTTGGA+AGG + chr4_1:77833331-77833350 None:intergenic 30.0%
GAGAGATGATGAAGTAATTA+AGG + chr4_1:77833378-77833397 None:intergenic 30.0%
!! AAGATTCTGAAACTAAGAAG+AGG - chr4_1:77833849-77833868 Msa0574390:intron 30.0%
! ACTTTGGAGGAAATAAAGAT+TGG + chr4_1:77834113-77834132 None:intergenic 30.0%
TAGGTAACTTATGGTATATG+TGG + chr4_1:77834245-77834264 None:intergenic 30.0%
CAAAATATGAATATCTGCTG+AGG + chr4_1:77834313-77834332 None:intergenic 30.0%
! AAGTATTGTCAGCTAAGTAA+TGG - chr4_1:77834432-77834451 Msa0574390:intron 30.0%
CTTGTACCACAGAAAATTTA+TGG + chr4_1:77834725-77834744 None:intergenic 30.0%
! CATAAATTTTCTGTGGTACA+AGG - chr4_1:77834723-77834742 Msa0574390:intron 30.0%
TATATAGATACGAAGGCAAA+TGG + chr4_1:77834768-77834787 None:intergenic 30.0%
! CTCTCTGTTTCTTCTTTAAT+TGG - chr4_1:77834822-77834841 Msa0574390:intron 30.0%
TTCAGAGATTAACTTCTCTT+TGG + chr4_1:77834927-77834946 None:intergenic 30.0%
GTTAATCTCTGAATTGAACA+TGG - chr4_1:77834934-77834953 Msa0574390:intron 30.0%
TTCTTCACGTTCATTTGATA+AGG + chr4_1:77834981-77835000 None:intergenic 30.0%
ATAAAGGAAAATAAAGAGGC+AGG + chr4_1:77835107-77835126 None:intergenic 30.0%
CCAAACAAACCCAAAATATA+TGG + chr4_1:77835250-77835269 None:intergenic 30.0%
!!! CCATATATTTTGGGTTTGTT+TGG - chr4_1:77835247-77835266 Msa0574390:intron 30.0%
TTGGATGTTGTTGATGTAAA+TGG + chr4_1:77835315-77835334 None:intergenic 30.0%
AGGCATAAATTACAGATTAG+AGG + chr4_1:77835383-77835402 None:intergenic 30.0%
AGAGCATAAGGTGAAAAAAT+AGG + chr4_1:77835467-77835486 None:intergenic 30.0%
AATCAAATAGATGTGCAAGT+GGG + chr4_1:77835504-77835523 None:intergenic 30.0%
TAATCAAATAGATGTGCAAG+TGG + chr4_1:77835505-77835524 None:intergenic 30.0%
GTCTTACAATACAATAGTTC+CGG + chr4_1:77835543-77835562 None:intergenic 30.0%
TCTTAAACACACACAAATAC+CGG + chr4_1:77835963-77835982 None:intergenic 30.0%
GTTATGCTTTCTCTTGATAT+AGG - chr4_1:77836006-77836025 Msa0574390:intron 30.0%
!! AGTGGGTTATAATTCAATTG+AGG - chr4_1:77836225-77836244 Msa0574390:intron 30.0%
TCTTGATAAGAACCGAAAAA+TGG - chr4_1:77836306-77836325 Msa0574390:intron 30.0%
TGTACCTTGATATGATCTAT+AGG - chr4_1:77836559-77836578 Msa0574390:intron 30.0%
AAGATGATATATCCAAGGTT+TGG - chr4_1:77836728-77836747 Msa0574390:intron 30.0%
ATAGTAATTGTTCCAAACCT+TGG + chr4_1:77836743-77836762 None:intergenic 30.0%
TACTTAGGAGGAAAATAAAG+AGG + chr4_1:77836807-77836826 None:intergenic 30.0%
GAAAGTTCCTTTATGATCTT+TGG + chr4_1:77836883-77836902 None:intergenic 30.0%
ACAGTCGCAACAAAATTATA+CGG + chr4_1:77837147-77837166 None:intergenic 30.0%
ATTCAAATGATGCAGATTGT+AGG + chr4_1:77837257-77837276 None:intergenic 30.0%
ATCATCAGAATATGGATCAA+AGG - chr4_1:77837298-77837317 Msa0574390:intron 30.0%
GCAGATAATGTTAAACTGTA+CGG - chr4_1:77837599-77837618 Msa0574390:intron 30.0%
CAGATAATGTTAAACTGTAC+GGG - chr4_1:77837600-77837619 Msa0574390:intron 30.0%
!! GATAAAAACTAGATGATGGA+GGG + chr4_1:77837728-77837747 None:intergenic 30.0%
! AGATAAAAACTAGATGATGG+AGG + chr4_1:77837729-77837748 None:intergenic 30.0%
!!! TTTTTTGAGAATGCAGCAAA+AGG + chr4_1:77837865-77837884 None:intergenic 30.0%
! TTTTGCTGCATTCTCAAAAA+AGG - chr4_1:77837864-77837883 Msa0574390:intron 30.0%
ATATATCTAGTAATCAGCTC+TGG - chr4_1:77838219-77838238 Msa0574390:intron 30.0%
AGCAATAAAAAACTGGTACT+AGG - chr4_1:77838295-77838314 Msa0574390:CDS 30.0%
GCAATAAAAAACTGGTACTA+GGG - chr4_1:77838296-77838315 Msa0574390:CDS 30.0%
CAATAAAAAACTGGTACTAG+GGG - chr4_1:77838297-77838316 Msa0574390:CDS 30.0%
TTATCTGTCATGCATGTAAT+AGG - chr4_1:77838491-77838510 Msa0574390:intron 30.0%
CATTGATACATCCTTCTAAA+TGG - chr4_1:77838625-77838644 Msa0574390:intron 30.0%
! GAAATCAAAAAGCGTGTTTA+TGG - chr4_1:77838679-77838698 Msa0574390:intron 30.0%
AGAGAACCTGATTAACATTT+AGG - chr4_1:77839197-77839216 Msa0574390:five_prime_UTR 30.0%
CATATAGTAACTCCCAGAAA+TGG - chr4_1:77830048-77830067 Msa0574390:three_prime_UTR 35.0%
!! TGGTTGTTTTCATTCCGATT+TGG - chr4_1:77830119-77830138 Msa0574390:three_prime_UTR 35.0%
CATTCATCGGTAACAGAAAA+TGG - chr4_1:77830205-77830224 Msa0574390:three_prime_UTR 35.0%
TGAAGTAATGCATCAATTCG+AGG + chr4_1:77830482-77830501 None:intergenic 35.0%
! AAGTGAAAGGGAAAGCATAT+AGG - chr4_1:77830882-77830901 Msa0574390:intron 35.0%
AACAAACTTGACTTATCCTC+GGG + chr4_1:77831146-77831165 None:intergenic 35.0%
TGTTTAATGCCTTGCTTAAG+GGG - chr4_1:77831162-77831181 Msa0574390:intron 35.0%
TGGAGAATATTATGTAGTGC+TGG + chr4_1:77831315-77831334 None:intergenic 35.0%
TTTACTGCAAGTTAGTGTCA+TGG + chr4_1:77831335-77831354 None:intergenic 35.0%
TATATGTCCATGAGATGAGA+TGG - chr4_1:77831453-77831472 Msa0574390:CDS 35.0%
ATATGTCCATGAGATGAGAT+GGG - chr4_1:77831454-77831473 Msa0574390:CDS 35.0%
GATCTGTGTAGATCAAGAAA+AGG - chr4_1:77831610-77831629 Msa0574390:CDS 35.0%
CTGGAATGAAAGTCCTTAAA+AGG - chr4_1:77831747-77831766 Msa0574390:intron 35.0%
TGATTCATGGGATGGTTATA+TGG + chr4_1:77831835-77831854 None:intergenic 35.0%
CCTATTAAGCAGTGATTCAT+GGG + chr4_1:77831847-77831866 None:intergenic 35.0%
GGTATATCTGGTAGTTTCAT+TGG + chr4_1:77831959-77831978 None:intergenic 35.0%
CAAGTTTCACAAGGTATATC+TGG + chr4_1:77831971-77831990 None:intergenic 35.0%
GAAACTTGTGATCATCCTAA+AGG - chr4_1:77831983-77832002 Msa0574390:intron 35.0%
TAGTTAATGGTGATATGTGG+TGG - chr4_1:77832098-77832117 Msa0574390:intron 35.0%
AGTTAATGGTGATATGTGGT+GGG - chr4_1:77832099-77832118 Msa0574390:intron 35.0%
AGGATTATAGACAACGGTTT+AGG - chr4_1:77832129-77832148 Msa0574390:intron 35.0%
! CAAGCTCAACTTTCATTTTC+CGG + chr4_1:77832337-77832356 None:intergenic 35.0%
GAAAATGAAAGTTGAGCTTG+AGG - chr4_1:77832337-77832356 Msa0574390:CDS 35.0%
AACTCACTTGAAGAATCAAC+AGG - chr4_1:77832376-77832395 Msa0574390:CDS 35.0%
! TCATACGTTGACTACAGTAT+TGG - chr4_1:77832699-77832718 Msa0574390:intron 35.0%
TTGATTCCTCTATTGTTTGC+AGG - chr4_1:77832761-77832780 Msa0574390:intron 35.0%
TGATTCCTCTATTGTTTGCA+GGG - chr4_1:77832762-77832781 Msa0574390:intron 35.0%
! TGATATTTTCAGAGGAAGAG+AGG - chr4_1:77833060-77833079 Msa0574390:intron 35.0%
! GATATTTTCAGAGGAAGAGA+GGG - chr4_1:77833061-77833080 Msa0574390:intron 35.0%
ACAAACAATGCTTCTTGGTT+TGG - chr4_1:77833133-77833152 Msa0574390:intron 35.0%
TTATTGCTTATGTCTATGGG+CGG + chr4_1:77833232-77833251 None:intergenic 35.0%
AAATGAGACAGAAACTTTGG+AGG + chr4_1:77834126-77834145 None:intergenic 35.0%
GGAAAATGAGACAGAAACTT+TGG + chr4_1:77834129-77834148 None:intergenic 35.0%
GGTACTATTTATATTGCCCA+AGG + chr4_1:77834224-77834243 None:intergenic 35.0%
! GAATATCTGCTGAGGTATTT+CGG + chr4_1:77834305-77834324 None:intergenic 35.0%
! AAATATGTTTCCACTTGGTG+TGG - chr4_1:77834530-77834549 Msa0574390:intron 35.0%
TGGTCTTCAGTAATACACAA+GGG + chr4_1:77834579-77834598 None:intergenic 35.0%
! TTGGTCTTCAGTAATACACA+AGG + chr4_1:77834580-77834599 None:intergenic 35.0%
GTGTGCATATATAGATACGA+AGG + chr4_1:77834775-77834794 None:intergenic 35.0%
ACAGAGAGAAAAAAAAAGGG+TGG + chr4_1:77834810-77834829 None:intergenic 35.0%
CACTGCAATGCTTAATGAAA+AGG - chr4_1:77835024-77835043 Msa0574390:intron 35.0%
CAATGCTTAATGAAAAGGTG+AGG - chr4_1:77835029-77835048 Msa0574390:intron 35.0%
CGGATGAATTTAGTCTACTT+TGG + chr4_1:77835065-77835084 None:intergenic 35.0%
!! TTTTGGGTGATCACAATCTT+CGG + chr4_1:77835218-77835237 None:intergenic 35.0%
ACTAGCATTGCATCTGATTT+GGG + chr4_1:77835286-77835305 None:intergenic 35.0%
AAAGTCTCGTGTATAAAGCT+TGG + chr4_1:77835334-77835353 None:intergenic 35.0%
!! TAATATCTCGAGAGGTGTTA+TGG + chr4_1:77835569-77835588 None:intergenic 35.0%
ACGTATGATAATATCTCGAG+AGG + chr4_1:77835577-77835596 None:intergenic 35.0%
AAGACAGATGGAGCAATATT+GGG + chr4_1:77835642-77835661 None:intergenic 35.0%
!! ATACTTGCTATGAAGACAGA+TGG + chr4_1:77835654-77835673 None:intergenic 35.0%
TGAGATGCAAAAATGCATGA+CGG - chr4_1:77835818-77835837 Msa0574390:intron 35.0%
! CTTACTTCTGGTTAGGATTT+AGG + chr4_1:77835875-77835894 None:intergenic 35.0%
CTAAATCCTAACCAGAAGTA+AGG - chr4_1:77835873-77835892 Msa0574390:intron 35.0%
CTTAAACACACACAAATACC+GGG + chr4_1:77835962-77835981 None:intergenic 35.0%
ATGCTTTCTCTTGATATAGG+AGG - chr4_1:77836009-77836028 Msa0574390:intron 35.0%
ATGTATGACCATGAGTTAGA+TGG + chr4_1:77836199-77836218 None:intergenic 35.0%
TAACTCATGGTCATACATTC+AGG - chr4_1:77836201-77836220 Msa0574390:intron 35.0%
!! TTAGCTCGTGTTCCATTTTT+CGG + chr4_1:77836321-77836340 None:intergenic 35.0%
TGTTCAAATACACAAGGTAC+AGG + chr4_1:77836499-77836518 None:intergenic 35.0%
!! GATGTAGTTCTACTGTTTTC+AGG - chr4_1:77836603-77836622 Msa0574390:intron 35.0%
GTTGGAAGATGATATATCCA+AGG - chr4_1:77836723-77836742 Msa0574390:intron 35.0%
TCCAGTTCCAAAGATCATAA+AGG - chr4_1:77836873-77836892 Msa0574390:CDS 35.0%
!! TCCTTTATGATCTTTGGAAC+TGG + chr4_1:77836877-77836896 None:intergenic 35.0%
CTTCACAAATAAGTACACCA+CGG + chr4_1:77836985-77837004 None:intergenic 35.0%
AGAGATGCTATATCCCATAT+TGG - chr4_1:77837039-77837058 Msa0574390:intron 35.0%
! TGAGCTTTGATCTTGATCTA+AGG + chr4_1:77837328-77837347 None:intergenic 35.0%
! TTTTAATATGACGGTGGACA+TGG - chr4_1:77837494-77837513 Msa0574390:intron 35.0%
TTTAATATGACGGTGGACAT+GGG - chr4_1:77837495-77837514 Msa0574390:intron 35.0%
! GAAAATTGGGGTATTAACAG+CGG - chr4_1:77837559-77837578 Msa0574390:intron 35.0%
ATGTTGAAAAAGTGGTTTCC+AGG - chr4_1:77837648-77837667 Msa0574390:intron 35.0%
TGTTGAAAAAGTGGTTTCCA+GGG - chr4_1:77837649-77837668 Msa0574390:intron 35.0%
TATGCAGAAGATCTTGAAAG+TGG - chr4_1:77837784-77837803 Msa0574390:intron 35.0%
GGAAAGAGATCAAAGATACA+AGG - chr4_1:77838512-77838531 Msa0574390:intron 35.0%
AGATCAAAGATACAAGGAGT+TGG - chr4_1:77838518-77838537 Msa0574390:intron 35.0%
GATCAAAGATACAAGGAGTT+GGG - chr4_1:77838519-77838538 Msa0574390:intron 35.0%
!!! ACACGCTTTTTGATTTCCTT+TGG + chr4_1:77838676-77838695 None:intergenic 35.0%
!! TGTCAGCTTTGAGTTATCTA+AGG - chr4_1:77838860-77838879 Msa0574390:intron 35.0%
CTTGTCATTCTATACAGTCA+TGG - chr4_1:77838944-77838963 Msa0574390:intron 35.0%
TCATTACATTAAACGACCAC+TGG + chr4_1:77839043-77839062 None:intergenic 35.0%
TCAGGTTCTCTATGAAATCA+TGG + chr4_1:77839188-77839207 None:intergenic 35.0%
AGTAACTCCCAGAAATGGTT+CGG - chr4_1:77830053-77830072 Msa0574390:three_prime_UTR 40.0%
AGAGATACAGAGAGAAGACA+TGG - chr4_1:77830099-77830118 Msa0574390:three_prime_UTR 40.0%
GCTACGAGATTTCACCAAAT+CGG + chr4_1:77830136-77830155 None:intergenic 40.0%
AATCAGACCTTTCCAGAAAG+CGG + chr4_1:77830288-77830307 None:intergenic 40.0%
AAGTGAGTGCATGTAAGTAG+GGG + chr4_1:77830601-77830620 None:intergenic 40.0%
CAAGTGAGTGCATGTAAGTA+GGG + chr4_1:77830602-77830621 None:intergenic 40.0%
ACAAGTGAGTGCATGTAAGT+AGG + chr4_1:77830603-77830622 None:intergenic 40.0%
GCTACTTGATCTAGCATGAA+AGG - chr4_1:77831081-77831100 Msa0574390:intron 40.0%
TTCATACCCATCTCATCTCA+TGG + chr4_1:77831463-77831482 None:intergenic 40.0%
TGTGTAGATCAAGAAAAGGG+AGG - chr4_1:77831614-77831633 Msa0574390:CDS 40.0%
AAGCATTCTATCATGCCGTA+TGG - chr4_1:77831660-77831679 Msa0574390:CDS 40.0%
CAGTTATACCTCGTAGACAA+GGG + chr4_1:77831730-77831749 None:intergenic 40.0%
! TGTCAAGTGAAGGCCTTTTA+AGG + chr4_1:77831763-77831782 None:intergenic 40.0%
TTAAGCAGTGATTCATGGGA+TGG + chr4_1:77831843-77831862 None:intergenic 40.0%
CCCATGAATCACTGCTTAAT+AGG - chr4_1:77831844-77831863 Msa0574390:intron 40.0%
GCCTATTAAGCAGTGATTCA+TGG + chr4_1:77831848-77831867 None:intergenic 40.0%
GAAATTGCTCAACATTAGGG+TGG + chr4_1:77831906-77831925 None:intergenic 40.0%
GGATGATCACAAGTTTCACA+AGG + chr4_1:77831980-77831999 None:intergenic 40.0%
!! GATCATCCTAAAGGTGCTAT+AGG - chr4_1:77831992-77832011 Msa0574390:intron 40.0%
! GCTTGAGGAATTTAGAACAG+AGG - chr4_1:77832352-77832371 Msa0574390:CDS 40.0%
CTCTTCAAGTCTTCGTATTG+TGG + chr4_1:77832402-77832421 None:intergenic 40.0%
AAGTAGGCAATTAGAGCAAC+AGG - chr4_1:77832424-77832443 Msa0574390:intron 40.0%
TAGAGCAACAGGTTGTGTAT+TGG - chr4_1:77832435-77832454 Msa0574390:intron 40.0%
!! AAAGGTATCGTCTTGCTTAC+TGG - chr4_1:77832632-77832651 Msa0574390:CDS 40.0%
TTGTTCCCTGCAAACAATAG+AGG + chr4_1:77832770-77832789 None:intergenic 40.0%
TTGCAGGGAACAATTACTAC+AGG - chr4_1:77832777-77832796 Msa0574390:intron 40.0%
TTTGATTACCAGACTGAGCA+CGG + chr4_1:77832882-77832901 None:intergenic 40.0%
AACTTCATCCATCAGGAGAT+TGG + chr4_1:77833105-77833124 None:intergenic 40.0%
TCTCTCTCTTGTGATGATTG+AGG - chr4_1:77833438-77833457 Msa0574390:intron 40.0%
CTTGTGATGATTGAGGAAAG+AGG - chr4_1:77833445-77833464 Msa0574390:intron 40.0%
! TGATGCTTTGTTGTACATGC+AGG - chr4_1:77833793-77833812 Msa0574390:intron 40.0%
! GATGCTTTGTTGTACATGCA+GGG - chr4_1:77833794-77833813 Msa0574390:intron 40.0%
! ATGCTTTGTTGTACATGCAG+GGG - chr4_1:77833795-77833814 Msa0574390:intron 40.0%
CTGAGTACAATTTATGGGAG+TGG - chr4_1:77834175-77834194 Msa0574390:intron 40.0%
CCAGCAATAGGAACTTTACT+TGG + chr4_1:77834280-77834299 None:intergenic 40.0%
CCAAGTAAAGTTCCTATTGC+TGG - chr4_1:77834277-77834296 Msa0574390:CDS 40.0%
TAGCTGACAATACTTCAACG+AGG + chr4_1:77834427-77834446 None:intergenic 40.0%
CACTAGCATTGCATCTGATT+TGG + chr4_1:77835287-77835306 None:intergenic 40.0%
CAAATCAGATGCAATGCTAG+TGG - chr4_1:77835285-77835304 Msa0574390:intron 40.0%
! TGTGTGCCTCATTTGAAACT+TGG - chr4_1:77835414-77835433 Msa0574390:CDS 40.0%
CATGCACCAAGTTTCAAATG+AGG + chr4_1:77835423-77835442 None:intergenic 40.0%
GGATAGTTCCCTATAACCAT+AGG + chr4_1:77835446-77835465 None:intergenic 40.0%
! ATGACTAGTGTGAGAGCATA+AGG + chr4_1:77835479-77835498 None:intergenic 40.0%
ATTACTTGAACGTAAGCAGC+CGG - chr4_1:77835521-77835540 Msa0574390:intron 40.0%
GAAGACAGATGGAGCAATAT+TGG + chr4_1:77835643-77835662 None:intergenic 40.0%
! AGAAGACCTTACTTCTGGTT+AGG + chr4_1:77835882-77835901 None:intergenic 40.0%
GTTAGAGAAGACCTTACTTC+TGG + chr4_1:77835887-77835906 None:intergenic 40.0%
GATATAGGAGGCTTCTATTG+TGG - chr4_1:77836021-77836040 Msa0574390:intron 40.0%
TGCACTATCCATCTAACTCA+TGG - chr4_1:77836188-77836207 Msa0574390:intron 40.0%
ATTCAATTGAGGCTGAAGAC+TGG - chr4_1:77836236-77836255 Msa0574390:intron 40.0%
TTCAATTGAGGCTGAAGACT+GGG - chr4_1:77836237-77836256 Msa0574390:intron 40.0%
CTAATAGTCCATGGCTTCTT+GGG + chr4_1:77836472-77836491 None:intergenic 40.0%
ACTAATAGTCCATGGCTTCT+TGG + chr4_1:77836473-77836492 None:intergenic 40.0%
! AAGGAACTTTCCTTGATGAC+TGG - chr4_1:77836892-77836911 Msa0574390:CDS 40.0%
! AGGAACTTTCCTTGATGACT+GGG - chr4_1:77836893-77836912 Msa0574390:CDS 40.0%
! CCACGGTATGAAAAGCATAT+TGG + chr4_1:77836968-77836987 None:intergenic 40.0%
! CCAATATGCTTTTCATACCG+TGG - chr4_1:77836965-77836984 Msa0574390:intron 40.0%
TGTTGCGACTGTTTATGCAT+TGG - chr4_1:77837155-77837174 Msa0574390:intron 40.0%
CTGATGCAATTATAACCCTG+TGG - chr4_1:77837220-77837239 Msa0574390:intron 40.0%
TAGGTAGATGTTTCACCACA+GGG + chr4_1:77837238-77837257 None:intergenic 40.0%
GCTTCTGCATCATCAGAATA+TGG - chr4_1:77837290-77837309 Msa0574390:intron 40.0%
ACAGGAAATAAGGCAGTTGA+AGG - chr4_1:77837535-77837554 Msa0574390:intron 40.0%
AGGCAGTTGAAGGAGAAAAT+TGG - chr4_1:77837545-77837564 Msa0574390:intron 40.0%
GGCAGTTGAAGGAGAAAATT+GGG - chr4_1:77837546-77837565 Msa0574390:intron 40.0%
GCAGTTGAAGGAGAAAATTG+GGG - chr4_1:77837547-77837566 Msa0574390:intron 40.0%
GTTGAAAAAGTGGTTTCCAG+GGG - chr4_1:77837650-77837669 Msa0574390:intron 40.0%
TGCTGCATTCTCAAAAAAGG+TGG - chr4_1:77837867-77837886 Msa0574390:intron 40.0%
GCTGCATTCTCAAAAAAGGT+GGG - chr4_1:77837868-77837887 Msa0574390:intron 40.0%
! TTCTACCTATTTGAAGCTCG+AGG - chr4_1:77838086-77838105 Msa0574390:CDS 40.0%
TAAGGTAAAGAGGAAGAGAG+GGG + chr4_1:77838354-77838373 None:intergenic 40.0%
GTAAGGTAAAGAGGAAGAGA+GGG + chr4_1:77838355-77838374 None:intergenic 40.0%
TGTAAGGTAAAGAGGAAGAG+AGG + chr4_1:77838356-77838375 None:intergenic 40.0%
CTCTTCCTCTTTACCTTACA+CGG - chr4_1:77838356-77838375 Msa0574390:intron 40.0%
TTTACCTTACACGGAGAGTA+TGG - chr4_1:77838365-77838384 Msa0574390:intron 40.0%
AAACCAATTGCCTCCTTATC+TGG + chr4_1:77838416-77838435 None:intergenic 40.0%
ATACAAGGAGTTGGGATTCA+GGG - chr4_1:77838527-77838546 Msa0574390:intron 40.0%
TATCGTTTATGGCACTCCAA+AGG - chr4_1:77838657-77838676 Msa0574390:intron 40.0%
GGTATACAATCTACTTCCAG+TGG - chr4_1:77839024-77839043 Msa0574390:CDS 40.0%
!! AGAGGCGATTTCTAGTGTAA+AGG - chr4_1:77839130-77839149 Msa0574390:five_prime_UTR 40.0%
TAAATGTATGGACACGACTC+TGG + chr4_1:77839164-77839183 None:intergenic 40.0%
CGATCTACCGAACCATTTCT+GGG + chr4_1:77830063-77830082 None:intergenic 45.0%
TCGATCTACCGAACCATTTC+TGG + chr4_1:77830064-77830083 None:intergenic 45.0%
GTAAGCTTGATCACGATGCT+TGG + chr4_1:77830517-77830536 None:intergenic 45.0%
TTTCAAGAAAGCTTCACCCG+AGG - chr4_1:77831127-77831146 Msa0574390:intron 45.0%
TTCCTGATACCCCTTAAGCA+AGG + chr4_1:77831174-77831193 None:intergenic 45.0%
ATCAAGAAAAGGGAGGCTGA+GGG - chr4_1:77831621-77831640 Msa0574390:CDS 45.0%
CCAGTTATACCTCGTAGACA+AGG + chr4_1:77831731-77831750 None:intergenic 45.0%
CCTTGTCTACGAGGTATAAC+TGG - chr4_1:77831728-77831747 Msa0574390:intron 45.0%
TTTCATTGGATGTAGCTGCC+AGG + chr4_1:77831945-77831964 None:intergenic 45.0%
!!! GATATGTGGTGGGCTTTTAC+AGG - chr4_1:77832109-77832128 Msa0574390:intron 45.0%
GAAGACTTGAAGAGCGAAGT+AGG - chr4_1:77832408-77832427 Msa0574390:intron 45.0%
! TAAGCATCGCAATCTAGCAG+AGG - chr4_1:77832579-77832598 Msa0574390:CDS 45.0%
TTTCTTTAGCACTCTGCAGC+TGG + chr4_1:77832804-77832823 None:intergenic 45.0%
CTCGTTCAACTTCATCCATC+AGG + chr4_1:77833112-77833131 None:intergenic 45.0%
CGAGCACAAACAATGCTTCT+TGG - chr4_1:77833128-77833147 Msa0574390:intron 45.0%
!! TCTTGGTTTGGAGAGAGAGA+AGG - chr4_1:77833145-77833164 Msa0574390:intron 45.0%
GTGATGATTGAGGAAAGAGG+CGG - chr4_1:77833448-77833467 Msa0574390:intron 45.0%
TGATGATTGAGGAAAGAGGC+GGG - chr4_1:77833449-77833468 Msa0574390:intron 45.0%
! TGCTTTGTTGTACATGCAGG+GGG - chr4_1:77833796-77833815 Msa0574390:intron 45.0%
GGTATTTCGGAACCAGCAAT+AGG + chr4_1:77834292-77834311 None:intergenic 45.0%
!! ATGTTTCCACTTGGTGTGGT+TGG - chr4_1:77834534-77834553 Msa0574390:intron 45.0%
AGGCACACAAAGTTAGCAAC+AGG + chr4_1:77835403-77835422 None:intergenic 45.0%
!! TGAAACTTGGTGCATGCCTA+TGG - chr4_1:77835427-77835446 Msa0574390:CDS 45.0%
TGGTGCATGCCTATGGTTAT+AGG - chr4_1:77835434-77835453 Msa0574390:CDS 45.0%
GGTGCATGCCTATGGTTATA+GGG - chr4_1:77835435-77835454 Msa0574390:CDS 45.0%
!! ATCTCGAGAGGTGTTATGGA+AGG + chr4_1:77835565-77835584 None:intergenic 45.0%
!! AGGTTTTATGTTGGGGAGAG+CGG + chr4_1:77835690-77835709 None:intergenic 45.0%
!!! GTACTGGGCTTTTAGCTTGA+AGG - chr4_1:77835742-77835761 Msa0574390:intron 45.0%
GGCAATGAAGAAAGAGCTTC+AGG - chr4_1:77836042-77836061 Msa0574390:intron 45.0%
ATGGTCATACATTCAGGCAG+TGG - chr4_1:77836207-77836226 Msa0574390:intron 45.0%
TGGTCATACATTCAGGCAGT+GGG - chr4_1:77836208-77836227 Msa0574390:intron 45.0%
ACACGAGCTAACACAGTTGA+AGG - chr4_1:77836330-77836349 Msa0574390:intron 45.0%
CTGATAGATCCCAGTCATCA+AGG + chr4_1:77836905-77836924 None:intergenic 45.0%
TGATGACTGGGATCTATCAG+AGG - chr4_1:77836905-77836924 Msa0574390:CDS 45.0%
GGGATCTATCAGAGGCTAAT+CGG - chr4_1:77836913-77836932 Msa0574390:CDS 45.0%
GTAGGTAGATGTTTCACCAC+AGG + chr4_1:77837239-77837258 None:intergenic 45.0%
! GCAGTCAGAGAGATCGATTT+AGG - chr4_1:77837364-77837383 Msa0574390:intron 45.0%
GACATCCTCGAGCTTCAAAT+AGG + chr4_1:77838094-77838113 None:intergenic 45.0%
ACTCTCCGTGTAAGGTAAAG+AGG + chr4_1:77838364-77838383 None:intergenic 45.0%
TATGGAGCAGAGTAGAGAGT+TGG - chr4_1:77838383-77838402 Msa0574390:intron 45.0%
ATGGAGCAGAGTAGAGAGTT+GGG - chr4_1:77838384-77838403 Msa0574390:intron 45.0%
AGTTGGGAGAAAGCCAGATA+AGG - chr4_1:77838400-77838419 Msa0574390:intron 45.0%
AAGCCAGATAAGGAGGCAAT+TGG - chr4_1:77838410-77838429 Msa0574390:intron 45.0%
GATACAAGGAGTTGGGATTC+AGG - chr4_1:77838526-77838545 Msa0574390:intron 45.0%
! TACAATCGGGTTGCATGTCT+TGG - chr4_1:77838816-77838835 Msa0574390:intron 45.0%
AGCTGACATTCTGTAGAGAC+AGG + chr4_1:77838848-77838867 None:intergenic 45.0%
TCATGGCTCAGATGAAACAC+TGG - chr4_1:77838961-77838980 Msa0574390:intron 45.0%
AGAACCATTGATCTTCCACG+TGG - chr4_1:77838992-77839011 Msa0574390:CDS 45.0%
AAGACACGCGACAGATAAGT+AGG + chr4_1:77839247-77839266 None:intergenic 45.0%
!! TATTAAAATAAAAAATTTGA+TGG + chr4_1:77837482-77837501 None:intergenic 5.0%
!!! AATTTTTTATTTTAATATGA+CGG - chr4_1:77837485-77837504 Msa0574390:intron 5.0%
AAAATGGAGTCTCCGCCAAG+TGG - chr4_1:77830221-77830240 Msa0574390:three_prime_UTR 50.0%
TTTCCAGAAAGCGGAGACGA+CGG + chr4_1:77830279-77830298 None:intergenic 50.0%
AGCTTGATCACGATGCTTGG+AGG + chr4_1:77830514-77830533 None:intergenic 50.0%
TGAGTGCATGTAAGTAGGGG+TGG + chr4_1:77830598-77830617 None:intergenic 50.0%
!! TGCCTTGCTTAAGGGGTATC+AGG - chr4_1:77831169-77831188 Msa0574390:intron 50.0%
!! GCTTAAGGGGTATCAGGAAG+AGG - chr4_1:77831175-77831194 Msa0574390:intron 50.0%
GCAAGAGCTGGATAAGGATC+TGG + chr4_1:77831275-77831294 None:intergenic 50.0%
ACTGAGGCAAGAGCTGGATA+AGG + chr4_1:77831281-77831300 None:intergenic 50.0%
GATCAAGAAAAGGGAGGCTG+AGG - chr4_1:77831620-77831639 Msa0574390:CDS 50.0%
ACTCACGATACACGTGCTAG+AGG + chr4_1:77831798-77831817 None:intergenic 50.0%
AGAAGCTGGGGTGAGACATA+TGG + chr4_1:77831881-77831900 None:intergenic 50.0%
ATTAGGGTGGCAAGAAGCTG+GGG + chr4_1:77831893-77831912 None:intergenic 50.0%
CATTAGGGTGGCAAGAAGCT+GGG + chr4_1:77831894-77831913 None:intergenic 50.0%
ACATTAGGGTGGCAAGAAGC+TGG + chr4_1:77831895-77831914 None:intergenic 50.0%
TCTATTCCTGTGCCAACACC+TGG - chr4_1:77831924-77831943 Msa0574390:CDS 50.0%
! CCGGTTCTCAGATTCTAGCT+CGG + chr4_1:77832318-77832337 None:intergenic 50.0%
CCGAGCTAGAATCTGAGAAC+CGG - chr4_1:77832315-77832334 Msa0574390:intron 50.0%
GAGCACGGAGTTCAAACAAC+TGG + chr4_1:77832867-77832886 None:intergenic 50.0%
TTTGAACTCCGTGCTCAGTC+TGG - chr4_1:77832871-77832890 Msa0574390:intron 50.0%
GATGCTAGAGATGCTCAGCA+AGG + chr4_1:77834068-77834087 None:intergenic 50.0%
ATGAGTCCAACCACACCAAG+TGG + chr4_1:77834543-77834562 None:intergenic 50.0%
!! ACTTGGTGTGGTTGGACTCA+TGG - chr4_1:77834542-77834561 Msa0574390:intron 50.0%
CTGCGTATGACTTCTAGTCC+CGG - chr4_1:77835941-77835960 Msa0574390:intron 50.0%
TGTAGCTTCCCAAGAAGCCA+TGG - chr4_1:77836461-77836480 Msa0574390:CDS 50.0%
ACAGGCGCACTAATAGTCCA+TGG + chr4_1:77836481-77836500 None:intergenic 50.0%
AAGTTCTGCCACCTTCTGCT+CGG + chr4_1:77836665-77836684 None:intergenic 50.0%
GGTGGCAGAACTTTCAGCTA+AGG - chr4_1:77836672-77836691 Msa0574390:CDS 50.0%
ATCAGAGGCTAATCGGAGTG+AGG - chr4_1:77836920-77836939 Msa0574390:CDS 50.0%
! TAATCGGAGTGAGGTGTCTG+AGG - chr4_1:77836929-77836948 Msa0574390:CDS 50.0%
ACGCTTGAGAGAGACAGAAG+AGG - chr4_1:77837389-77837408 Msa0574390:intron 50.0%
!! GGTTTCCAGGGGTTCTAAGA+AGG - chr4_1:77837661-77837680 Msa0574390:intron 50.0%
CAACACCTTCTTAGAACCCC+TGG + chr4_1:77837669-77837688 None:intergenic 50.0%
TGCTCCATACTCTCCGTGTA+AGG + chr4_1:77838372-77838391 None:intergenic 50.0%
TGGGAGAAAGCCAGATAAGG+AGG - chr4_1:77838403-77838422 Msa0574390:intron 50.0%
GACAGAATCACACTCAGCAG+CGG - chr4_1:77838549-77838568 Msa0574390:intron 50.0%
AGCAGCGGACGATTTCTTCT+CGG - chr4_1:77838564-77838583 Msa0574390:intron 50.0%
CAGTCCACGTGGAAGATCAA+TGG + chr4_1:77838999-77839018 None:intergenic 50.0%
! ATCTTCCACGTGGACTGTAG+TGG - chr4_1:77839002-77839021 Msa0574390:CDS 50.0%
! TCTTCCACGTGGACTGTAGT+GGG - chr4_1:77839003-77839022 Msa0574390:CDS 50.0%
TATACCCACTACAGTCCACG+TGG + chr4_1:77839010-77839029 None:intergenic 50.0%
AAAGCGGAGACGACGGAGAT+CGG + chr4_1:77830272-77830291 None:intergenic 55.0%
! GTCGTCTCCGCTTTCTGGAA+AGG - chr4_1:77830278-77830297 Msa0574390:CDS 55.0%
CATGTAAGTAGGGGTGGTCG+TGG + chr4_1:77830592-77830611 None:intergenic 55.0%
ACAGCAACTGAGGCAAGAGC+TGG + chr4_1:77831287-77831306 None:intergenic 55.0%
GCTGGAACTCACAGCAACTG+AGG + chr4_1:77831297-77831316 None:intergenic 55.0%
TTTGCAGGCCCTTGTCTACG+AGG - chr4_1:77831719-77831738 Msa0574390:CDS 55.0%
TGGATGTAGCTGCCAGGTGT+TGG + chr4_1:77831939-77831958 None:intergenic 55.0%
AGCAGAGGCCAATCTCCTGA+TGG - chr4_1:77833094-77833113 Msa0574390:intron 55.0%
TGAGGCTGAAGACTGGGAAG+TGG - chr4_1:77836243-77836262 Msa0574390:intron 55.0%
ACTGGGAAGTGGCCACAAGT+GGG - chr4_1:77836254-77836273 Msa0574390:intron 55.0%
TGGGGAGGAGATGAGCAAGA+TGG - chr4_1:77836273-77836292 Msa0574390:intron 55.0%
ACTCGAAACAGCCGAGCAGA+AGG - chr4_1:77836651-77836670 Msa0574390:CDS 55.0%
ACTAGCTGCTCTACTGACGC+AGG - chr4_1:77836842-77836861 Msa0574390:CDS 55.0%
CTAGCTGCTCTACTGACGCA+GGG - chr4_1:77836843-77836862 Msa0574390:CDS 55.0%
GGCTCAGATGAAACACTGGC+TGG - chr4_1:77838965-77838984 Msa0574390:intron 55.0%
GGAGTCTCCGCCAAGTGGAT+CGG - chr4_1:77830226-77830245 Msa0574390:three_prime_UTR 60.0%
TCCGCCAAGTGGATCGGAGA+GGG - chr4_1:77830232-77830251 Msa0574390:three_prime_UTR 60.0%
TCCCTCTCCGATCCACTTGG+CGG + chr4_1:77830236-77830255 None:intergenic 60.0%
GTGTCCCTCTCCGATCCACT+TGG + chr4_1:77830239-77830258 None:intergenic 60.0%
GACGACGGAGATCGGAGAGT+TGG + chr4_1:77830264-77830283 None:intergenic 60.0%
TCTCCGTCGTCTCCGCTTTC+TGG - chr4_1:77830273-77830292 Msa0574390:CDS 60.0%
! GGTCGTGGTGCGGTTTGGAT+CGG + chr4_1:77830577-77830596 None:intergenic 60.0%
AAGTAGGGGTGGTCGTGGTG+CGG + chr4_1:77830587-77830606 None:intergenic 60.0%
GAAAAGGGAGGCTGAGGGAG+AGG - chr4_1:77831626-77831645 Msa0574390:CDS 60.0%
!! TAGCTGCCAGGTGTTGGCAC+AGG + chr4_1:77831933-77831952 None:intergenic 60.0%
GAGGGCAGCTAAGCAAGCAG+AGG - chr4_1:77833079-77833098 Msa0574390:intron 60.0%
GACTGGGAAGTGGCCACAAG+TGG - chr4_1:77836253-77836272 Msa0574390:intron 60.0%
CTGGGAAGTGGCCACAAGTG+GGG - chr4_1:77836255-77836274 Msa0574390:intron 60.0%
GCTCATCTCCTCCCCACTTG+TGG + chr4_1:77836269-77836288 None:intergenic 60.0%
CGAAACAGCCGAGCAGAAGG+TGG - chr4_1:77836654-77836673 Msa0574390:CDS 60.0%
CTCCGCCAAGTGGATCGGAG+AGG - chr4_1:77830231-77830250 Msa0574390:three_prime_UTR 65.0%
GGAAGTGGCCACAAGTGGGG+AGG - chr4_1:77836258-77836277 Msa0574390:intron 65.0%
GGGGTGGTCGTGGTGCGGTT+TGG + chr4_1:77830582-77830601 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 77829994 77839284 77829994 ID=Msa0574390;Name=Msa0574390
chr4_1 mRNA 77829994 77839284 77829994 ID=Msa0574390-mRNA-1;Parent=Msa0574390;Name=Msa0574390-mRNA-1;_AED=0.09;_eAED=0.09;_QI=230|1|1|1|1|1|19|263|681
chr4_1 exon 77829994 77830317 77829994 ID=Msa0574390-mRNA-1:exon:27502;Parent=Msa0574390-mRNA-1
chr4_1 exon 77830397 77830489 77830397 ID=Msa0574390-mRNA-1:exon:27501;Parent=Msa0574390-mRNA-1
chr4_1 exon 77830686 77830765 77830686 ID=Msa0574390-mRNA-1:exon:27500;Parent=Msa0574390-mRNA-1
chr4_1 exon 77831393 77831494 77831393 ID=Msa0574390-mRNA-1:exon:27499;Parent=Msa0574390-mRNA-1
chr4_1 exon 77831596 77831739 77831596 ID=Msa0574390-mRNA-1:exon:27498;Parent=Msa0574390-mRNA-1
chr4_1 exon 77831868 77831972 77831868 ID=Msa0574390-mRNA-1:exon:27497;Parent=Msa0574390-mRNA-1
chr4_1 exon 77832328 77832414 77832328 ID=Msa0574390-mRNA-1:exon:27496;Parent=Msa0574390-mRNA-1
chr4_1 exon 77832534 77832653 77832534 ID=Msa0574390-mRNA-1:exon:27495;Parent=Msa0574390-mRNA-1
chr4_1 exon 77832927 77833055 77832927 ID=Msa0574390-mRNA-1:exon:27494;Parent=Msa0574390-mRNA-1
chr4_1 exon 77833158 77833250 77833158 ID=Msa0574390-mRNA-1:exon:27493;Parent=Msa0574390-mRNA-1
chr4_1 exon 77834233 77834398 77834233 ID=Msa0574390-mRNA-1:exon:27492;Parent=Msa0574390-mRNA-1
chr4_1 exon 77835408 77835463 77835408 ID=Msa0574390-mRNA-1:exon:27491;Parent=Msa0574390-mRNA-1
chr4_1 exon 77836112 77836206 77836112 ID=Msa0574390-mRNA-1:exon:27490;Parent=Msa0574390-mRNA-1
chr4_1 exon 77836386 77836495 77836386 ID=Msa0574390-mRNA-1:exon:27489;Parent=Msa0574390-mRNA-1
chr4_1 exon 77836643 77836731 77836643 ID=Msa0574390-mRNA-1:exon:27488;Parent=Msa0574390-mRNA-1
chr4_1 exon 77836833 77836982 77836833 ID=Msa0574390-mRNA-1:exon:27487;Parent=Msa0574390-mRNA-1
chr4_1 exon 77837974 77838152 77837974 ID=Msa0574390-mRNA-1:exon:27486;Parent=Msa0574390-mRNA-1
chr4_1 exon 77838234 77838344 77838234 ID=Msa0574390-mRNA-1:exon:27485;Parent=Msa0574390-mRNA-1
chr4_1 exon 77838979 77839284 77838979 ID=Msa0574390-mRNA-1:exon:27484;Parent=Msa0574390-mRNA-1
chr4_1 five_prime_UTR 77839055 77839284 77839055 ID=Msa0574390-mRNA-1:five_prime_utr;Parent=Msa0574390-mRNA-1
chr4_1 CDS 77838979 77839054 77838979 ID=Msa0574390-mRNA-1:cds;Parent=Msa0574390-mRNA-1
chr4_1 CDS 77838234 77838344 77838234 ID=Msa0574390-mRNA-1:cds;Parent=Msa0574390-mRNA-1
chr4_1 CDS 77837974 77838152 77837974 ID=Msa0574390-mRNA-1:cds;Parent=Msa0574390-mRNA-1
chr4_1 CDS 77836833 77836982 77836833 ID=Msa0574390-mRNA-1:cds;Parent=Msa0574390-mRNA-1
chr4_1 CDS 77836643 77836731 77836643 ID=Msa0574390-mRNA-1:cds;Parent=Msa0574390-mRNA-1
chr4_1 CDS 77836386 77836495 77836386 ID=Msa0574390-mRNA-1:cds;Parent=Msa0574390-mRNA-1
chr4_1 CDS 77836112 77836206 77836112 ID=Msa0574390-mRNA-1:cds;Parent=Msa0574390-mRNA-1
chr4_1 CDS 77835408 77835463 77835408 ID=Msa0574390-mRNA-1:cds;Parent=Msa0574390-mRNA-1
chr4_1 CDS 77834233 77834398 77834233 ID=Msa0574390-mRNA-1:cds;Parent=Msa0574390-mRNA-1
chr4_1 CDS 77833158 77833250 77833158 ID=Msa0574390-mRNA-1:cds;Parent=Msa0574390-mRNA-1
chr4_1 CDS 77832927 77833055 77832927 ID=Msa0574390-mRNA-1:cds;Parent=Msa0574390-mRNA-1
chr4_1 CDS 77832534 77832653 77832534 ID=Msa0574390-mRNA-1:cds;Parent=Msa0574390-mRNA-1
chr4_1 CDS 77832328 77832414 77832328 ID=Msa0574390-mRNA-1:cds;Parent=Msa0574390-mRNA-1
chr4_1 CDS 77831868 77831972 77831868 ID=Msa0574390-mRNA-1:cds;Parent=Msa0574390-mRNA-1
chr4_1 CDS 77831596 77831739 77831596 ID=Msa0574390-mRNA-1:cds;Parent=Msa0574390-mRNA-1
chr4_1 CDS 77831393 77831494 77831393 ID=Msa0574390-mRNA-1:cds;Parent=Msa0574390-mRNA-1
chr4_1 CDS 77830686 77830765 77830686 ID=Msa0574390-mRNA-1:cds;Parent=Msa0574390-mRNA-1
chr4_1 CDS 77830397 77830489 77830397 ID=Msa0574390-mRNA-1:cds;Parent=Msa0574390-mRNA-1
chr4_1 CDS 77830257 77830317 77830257 ID=Msa0574390-mRNA-1:cds;Parent=Msa0574390-mRNA-1
chr4_1 three_prime_UTR 77829994 77830256 77829994 ID=Msa0574390-mRNA-1:three_prime_utr;Parent=Msa0574390-mRNA-1
Gene Sequence

>Msa0574390

ATGGAGTCTCCGCCAAGTGGATCGGAGAGGGACACAACCAACTCTCCGATCTCCGTCGTCTCCGCTTTCTGGAAAGATTTTGACTTAGAGAAGGAGAAATCTGTGTTAGATGAACAAGGGCTTCGAATTGCAGAAAACCAAGAAAACAGTCAGAAAAATAGGCGGAAGCTTGCAGAGAGCACTAGAAATTTCAAGAAAGCTTCACCCGAGGATAAGTCAAGTTTGTTTAATGCCTTGCTTAAGGGGTATCAGGAAGAGGTTGATAATCTTACAAAAAGAGCAAAGTTTGGAGAAAATGCTTTCCTTAACATCTATCAAAAGCTGTATGAAGCTCCAGATCCTTATCCAGCTCTTGCCTCAGTTGCTGAGCAAGATCTCAAGCTGTCCGAGCTAGAATCTGAGAACCGGAAAATGAAAGTTGAGCTTGAGGAATTTAGAACAGAGGCAACTCACTTGAAGAATCAACAGGCCACAATACGAAGACTTGAAGAGCGAAGTAGGCAATTAGAGCAACAGATGGAAGAGAAAGTAAAAGAAATTGTGGAGATTAAGCATCGCAATCTAGCAGAGGAGAACCAGAAAACATTAGAAATTTTAAAAGAAAGGGAACAATTACTACAGGACCAGCTGCAGAGTGCTAAAGAAAGTGTTTCAAATATGAAGAAATTGCACGAACTTGCACAAAACCAGTTGTTTGAACTCCGTGCTCAGTCTGAGGAAGAGAGGGCAGCTAAGCAAGCAGAGGCCAATCTCCTGATGGATGAAGTTGAACGAGCACAAACAATGCTTCTTGGTTTGGAGAGAGAGAAGGGGGTACTTCGATCTCAGTTGCAAACAGCAAATGAAGATTCTGAAACTAAGAAGAGTGATAATTTAGACTCAAATAATGCACTTGAGAATTCTTTAATTGCCAAAGAGAAGTTAATCTCTGAATTGAACATGGAGCTACACAATATTGAAACAACCTTATCAAATGAACGTGAAGAACACATTAATGATGTGAAAAAATTCACTGCAATGCTTAATGAAAAGGAGGCTTCTATTGTGGCAATGAAGAAAGAGCTTCAGGCAAGACCAACTGAAAAAATAGTTGATGATTTGCGCAAGAAAGTAAAAATTTTGCAGGCAGTGGGTTATAATTCAATTGAGGCTGAAGACTGGGAAGTGGCCACAAGTGGGGAGGAGATGAGCAAGATGGAATCTCTACTTCTTGATAAGAACCGAAAAATGGAACACGAGCTAACACAGTTGAAGGTCAAACTTTCTGAAAAAACATCTTCACTCGAAACAGCCGAGCAGAAGGTGGCAGAACTTTCAGCTAAGGTTAATGAACAACAAAAACTGATACAAAAGTTGGAAGATGATATATCCAAGGGATATAATTCCAGTTCCAAAGATCATAAAGGAACTTTCCTTGATGACTGGGATCTATCAGAGGCTAATCGGAGTGAGGTGTCTGAGAATATGGATCAAAGGCATGCCTTAGATCAAGATCAAAGCTCAATGCTTAAAGTAATATGCAGTCAGAGAGATCGATTTAGGACACGCTTGAGAGAGACAGAAGAGGAAATAAGGCAGTTGAAGGAGAAAATTGGGGTATTAACAGCGGAACTAGAAAAGACTAAAGCAGATAATGTTAAACTGTACGGGAAGATTCGTTATGTCCAAGACTATAATGTTGAAAAAGTGGTTTCCAGGGGTTCTAAGAAGTATGCAGAAGATCTTGAAAGTGGTTTCACATCAGATGTTGAATCAAAATACAAGAAGATATACGAGGAAGATATAAATCCTTTTGCTGCATTCTCAAAAAAGGAAAGAGATCAAAGATACAAGGAGTTGGGATTCAGGGACAGAATCACACTCAGCAGCGGACGATTTCTTCTCGGTAACAAGTATGCCCGAACTTTTGCATTCTTTTATACAATCGGGTTGCATGTCTTGGTCTTTACCTGTCTCTACAGAATGTCAGCTTTGAGTTATCTAAGTCATGGCTCAGATGAAACACTGGCTGGAGAGAGAACCATTGATCTTCCACGTGGACTGTAG

Protein sequence

>Msa0574390

MESPPSGSERDTTNSPISVVSAFWKDFDLEKEKSVLDEQGLRIAENQENSQKNRRKLAESTRNFKKASPEDKSSLFNALLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASVAEQDLKLSELESENRKMKVELEEFRTEATHLKNQQATIRRLEERSRQLEQQMEEKVKEIVEIKHRNLAEENQKTLEILKEREQLLQDQLQSAKESVSNMKKLHELAQNQLFELRAQSEEERAAKQAEANLLMDEVERAQTMLLGLEREKGVLRSQLQTANEDSETKKSDNLDSNNALENSLIAKEKLISELNMELHNIETTLSNEREEHINDVKKFTAMLNEKEASIVAMKKELQARPTEKIVDDLRKKVKILQAVGYNSIEAEDWEVATSGEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSSLETAEQKVAELSAKVNEQQKLIQKLEDDISKGYNSSSKDHKGTFLDDWDLSEANRSEVSENMDQRHALDQDQSSMLKVICSQRDRFRTRLRETEEEIRQLKEKIGVLTAELEKTKADNVKLYGKIRYVQDYNVEKVVSRGSKKYAEDLESGFTSDVESKYKKIYEEDINPFAAFSKKERDQRYKELGFRDRITLSSGRFLLGNKYARTFAFFYTIGLHVLVFTCLYRMSALSYLSHGSDETLAGERTIDLPRGL*