Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0049320 | XP_003613041.2 | 90.250 | 400 | 29 | 1 | 8 | 397 | 302 | 701 | 0.0 | 692 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0049320 | sp|Q6SZ87|NAT11_ARATH | 65.087 | 401 | 126 | 2 | 8 | 394 | 309 | 709 | 2.07e-170 | 496 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0049320 | G7JWD8 | 90.250 | 400 | 29 | 1 | 8 | 397 | 302 | 701 | 0.0 | 692 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0049320 | Msa0841430 | 0.822389 | 2.431846e-53 | -8.615850e-47 |
| Msa0049320 | Msa1172350 | 0.860663 | 1.765018e-63 | -8.615850e-47 |
| Msa0049320 | Msa1424520 | 0.852247 | 5.232859e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0049320 | MtrunA17_Chr5g0412181 | 90.250 | 400 | 29 | 1 | 8 | 397 | 302 | 701 | 0.0 | 692 |
| Msa0049320 | MtrunA17_Chr8g0367361 | 74.500 | 400 | 92 | 1 | 8 | 397 | 373 | 772 | 0.0 | 612 |
| Msa0049320 | MtrunA17_Chr4g0027121 | 52.736 | 402 | 178 | 2 | 8 | 397 | 289 | 690 | 3.77e-138 | 410 |
| Msa0049320 | MtrunA17_Chr2g0320981 | 51.741 | 402 | 182 | 3 | 8 | 397 | 281 | 682 | 2.04e-134 | 400 |
| Msa0049320 | MtrunA17_Chr2g0332871 | 47.120 | 382 | 164 | 3 | 28 | 397 | 292 | 647 | 2.32e-116 | 353 |
| Msa0049320 | MtrunA17_Chr8g0379171 | 34.286 | 385 | 229 | 5 | 7 | 389 | 155 | 517 | 9.76e-70 | 228 |
| Msa0049320 | MtrunA17_Chr3g0119521 | 36.788 | 386 | 219 | 6 | 7 | 389 | 150 | 513 | 5.99e-69 | 226 |
| Msa0049320 | MtrunA17_Chr2g0284061 | 32.727 | 385 | 235 | 4 | 7 | 389 | 155 | 517 | 2.68e-66 | 219 |
| Msa0049320 | MtrunA17_Chr8g0364611 | 32.821 | 390 | 236 | 5 | 4 | 389 | 159 | 526 | 2.40e-65 | 217 |
| Msa0049320 | MtrunA17_Chr4g0059331 | 31.969 | 391 | 238 | 5 | 4 | 389 | 158 | 525 | 7.24e-65 | 216 |
| Msa0049320 | MtrunA17_Chr3g0117941 | 32.737 | 391 | 235 | 5 | 4 | 389 | 158 | 525 | 7.48e-65 | 216 |
| Msa0049320 | MtrunA17_Chr5g0414131 | 31.620 | 389 | 238 | 5 | 6 | 389 | 166 | 531 | 9.73e-61 | 205 |
| Msa0049320 | MtrunA17_Chr1g0207021 | 30.548 | 383 | 238 | 6 | 11 | 389 | 162 | 520 | 9.29e-53 | 183 |
| Msa0049320 | MtrunA17_Chr3g0134911 | 29.880 | 415 | 235 | 9 | 8 | 389 | 187 | 578 | 1.82e-52 | 184 |
| Msa0049320 | MtrunA17_Chr1g0154001 | 30.077 | 389 | 244 | 5 | 5 | 389 | 176 | 540 | 4.13e-51 | 179 |
| Msa0049320 | MtrunA17_Chr5g0405471 | 30.348 | 402 | 234 | 7 | 8 | 389 | 180 | 555 | 1.11e-49 | 176 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0049320 | AT4G38050.1 | 65.087 | 401 | 126 | 2 | 8 | 394 | 309 | 709 | 2.11e-171 | 496 |
| Msa0049320 | AT2G27810.1 | 55.446 | 404 | 168 | 3 | 6 | 397 | 302 | 705 | 6.73e-132 | 395 |
| Msa0049320 | AT2G27810.4 | 52.570 | 428 | 167 | 3 | 6 | 397 | 302 | 729 | 1.04e-128 | 387 |
| Msa0049320 | AT2G27810.2 | 63.542 | 288 | 105 | 0 | 6 | 293 | 302 | 589 | 5.11e-106 | 325 |
| Msa0049320 | AT2G27810.3 | 64.315 | 241 | 86 | 0 | 6 | 246 | 302 | 542 | 5.11e-84 | 266 |
| Msa0049320 | AT1G60030.1 | 35.550 | 391 | 224 | 5 | 4 | 389 | 164 | 531 | 1.51e-73 | 239 |
| Msa0049320 | AT2G05760.1 | 36.788 | 386 | 219 | 5 | 7 | 389 | 150 | 513 | 1.97e-68 | 225 |
| Msa0049320 | AT2G34190.1 | 33.506 | 385 | 232 | 5 | 7 | 389 | 155 | 517 | 2.47e-68 | 225 |
| Msa0049320 | AT5G62890.1 | 32.821 | 390 | 236 | 4 | 4 | 389 | 158 | 525 | 8.49e-66 | 218 |
| Msa0049320 | AT5G62890.2 | 32.821 | 390 | 236 | 4 | 4 | 389 | 158 | 525 | 8.49e-66 | 218 |
| Msa0049320 | AT5G62890.3 | 32.821 | 390 | 236 | 4 | 4 | 389 | 158 | 525 | 8.49e-66 | 218 |
| Msa0049320 | AT5G49990.2 | 34.103 | 390 | 231 | 6 | 4 | 389 | 154 | 521 | 9.37e-65 | 216 |
| Msa0049320 | AT5G49990.3 | 34.103 | 390 | 231 | 6 | 4 | 389 | 154 | 521 | 9.37e-65 | 216 |
| Msa0049320 | AT5G49990.1 | 34.103 | 390 | 231 | 6 | 4 | 389 | 154 | 521 | 9.37e-65 | 216 |
| Msa0049320 | AT5G49990.4 | 34.103 | 390 | 231 | 6 | 4 | 389 | 154 | 521 | 9.37e-65 | 216 |
| Msa0049320 | AT1G10540.1 | 32.576 | 396 | 234 | 7 | 4 | 390 | 162 | 533 | 2.35e-63 | 212 |
| Msa0049320 | AT5G62890.4 | 34.426 | 305 | 182 | 1 | 4 | 308 | 158 | 444 | 2.10e-57 | 195 |
| Msa0049320 | AT1G49960.1 | 32.570 | 393 | 225 | 4 | 8 | 389 | 156 | 519 | 2.42e-55 | 191 |
| Msa0049320 | AT2G26510.1 | 32.973 | 370 | 221 | 6 | 24 | 389 | 196 | 542 | 2.81e-54 | 188 |
| Msa0049320 | AT1G65550.1 | 29.426 | 401 | 240 | 6 | 4 | 389 | 162 | 534 | 1.10e-49 | 176 |
| Msa0049320 | AT1G10540.2 | 33.603 | 247 | 139 | 4 | 4 | 245 | 162 | 388 | 4.81e-41 | 149 |
| Msa0049320 | AT2G26510.3 | 34.685 | 222 | 127 | 2 | 24 | 245 | 196 | 399 | 2.92e-33 | 129 |
| Msa0049320 | AT2G26510.2 | 34.842 | 221 | 125 | 3 | 24 | 243 | 196 | 398 | 9.18e-30 | 119 |
| Msa0049320 | AT5G25420.1 | 24.407 | 295 | 137 | 5 | 4 | 298 | 174 | 382 | 5.88e-17 | 82.4 |
Find 113 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGTATATTGGCTGGTCTTT+GGG | 0.186238 | 1_2:+2488801 | Msa0049320:CDS |
| TATTACTAGCAACATTAAAT+TGG | 0.243999 | 1_2:+2489813 | Msa0049320:three_prime_UTR |
| GTAGTATATTGGCTGGTCTT+TGG | 0.248801 | 1_2:+2488800 | Msa0049320:CDS |
| GAAGTCCTGAAGTGGAAAAT+AGG | 0.249412 | 1_2:-2488539 | None:intergenic |
| TGCTTCCATTCCACAGGCCT+TGG | 0.253689 | 1_2:+2489110 | Msa0049320:CDS |
| TTGGCTGGTCTTTGGGGTTC+AGG | 0.262793 | 1_2:+2488808 | Msa0049320:CDS |
| CCTCGTTCTTGTTTACTTCC+CGG | 0.284283 | 1_2:-2489603 | None:intergenic |
| CACTTCTGACATTAACAAAA+AGG | 0.313427 | 1_2:+2489744 | Msa0049320:three_prime_UTR |
| ACCGTTGGCGCAACCACAAC+AGG | 0.317314 | 1_2:-2487862 | None:intergenic |
| TGACACTATGACCATGATTA+TGG | 0.319148 | 1_2:-2488561 | None:intergenic |
| CGCATAAGGAACAAGATAAC+TGG | 0.321940 | 1_2:-2489309 | None:intergenic |
| TTGCTGTTGGTTGAAGTGAT+TGG | 0.324960 | 1_2:+2489713 | Msa0049320:exon |
| TTGATCCTCTTCTCATTTGT+AGG | 0.332106 | 1_2:+2488922 | Msa0049320:CDS |
| GTGGGCTCTTACCGTGGCAT+TGG | 0.337955 | 1_2:+2489155 | Msa0049320:CDS |
| ATTGCAGATCATGAAGAAAA+AGG | 0.345314 | 1_2:+2489768 | Msa0049320:three_prime_UTR |
| TGCTGTTGGTTGAAGTGATT+GGG | 0.353798 | 1_2:+2489714 | Msa0049320:exon |
| GGTCTTTGGGGTTCAGGTAC+CGG | 0.358878 | 1_2:+2488814 | Msa0049320:CDS |
| GGAGGGTTTCTGTAGTATAT+TGG | 0.361128 | 1_2:+2488789 | Msa0049320:CDS |
| ATCAGCCCTGCAATGCTTCA+TGG | 0.374512 | 1_2:-2488453 | None:intergenic |
| CATATACCATGAAGCATTGC+AGG | 0.376910 | 1_2:+2488447 | Msa0049320:CDS |
| CAGTGTAACCACCATGTTCA+TGG | 0.386977 | 1_2:-2489550 | None:intergenic |
| AGGCTGGTATTGTTGAAAAT+AGG | 0.398406 | 1_2:-2489267 | None:intergenic |
| TGGGCTCTTACCGTGGCATT+GGG | 0.399078 | 1_2:+2489156 | Msa0049320:CDS |
| ATTCCTCGGCTCACAACTCC+TGG | 0.404762 | 1_2:-2488760 | None:intergenic |
| ACTGTTGGTGGCATTTCTAC+TGG | 0.415195 | 1_2:+2489569 | Msa0049320:CDS |
| CGTCACTTCAAGTTAATTCA+AGG | 0.416440 | 1_2:+2488728 | Msa0049320:CDS |
| CGTTGAGCGCAACAATAACT+TGG | 0.418430 | 1_2:+2488321 | Msa0049320:CDS |
| TTCTGTCAAAGTCGTTGAAC+CGG | 0.418532 | 1_2:-2488833 | None:intergenic |
| CCCTGTTGTGGTTGCGCCAA+CGG | 0.418704 | 1_2:+2487861 | Msa0049320:CDS |
| ATGTTTGAACTCGGTACATT+GGG | 0.420675 | 1_2:-2488398 | None:intergenic |
| CCACTTGACGCTGCCGCATA+AGG | 0.423290 | 1_2:-2489323 | None:intergenic |
| CACTGTTCCACAAATTGCAT+TGG | 0.423678 | 1_2:+2487948 | Msa0049320:CDS |
| ATGGTCAATCAGCTAGCTTC+AGG | 0.426770 | 1_2:+2489196 | Msa0049320:CDS |
| GGTTTAGCGTTCTTCAGTTA+CGG | 0.431955 | 1_2:+2487895 | Msa0049320:CDS |
| AAGTCCTGAAGTGGAAAATA+GGG | 0.433703 | 1_2:-2488538 | None:intergenic |
| CCCACAAGCTGGTATTTGCT+TGG | 0.438042 | 1_2:+2487921 | Msa0049320:CDS |
| AATAGAACCAATGCAATTTG+TGG | 0.438702 | 1_2:-2487955 | None:intergenic |
| ACTGGTTGCTTCTGTTGATT+CGG | 0.443347 | 1_2:+2488583 | Msa0049320:CDS |
| CTCGTTCTTGTTTACTTCCC+GGG | 0.450845 | 1_2:-2489602 | None:intergenic |
| TCTCCTTGCTTCCATTCCAC+AGG | 0.455637 | 1_2:+2489104 | Msa0049320:CDS |
| CAGCATAAATTCGAAATAAG+TGG | 0.456937 | 1_2:-2488190 | None:intergenic |
| GCGCCAACGGTTGCTGCTGT+AGG | 0.457783 | 1_2:+2487874 | Msa0049320:CDS |
| GGCCTATCGACTTTACAGTA+TGG | 0.462728 | 1_2:+2489177 | Msa0049320:CDS |
| CTCACAACTCCTGGAGTTGG+AGG | 0.475666 | 1_2:-2488751 | None:intergenic |
| CCAAGCAAATACCAGCTTGT+GGG | 0.476150 | 1_2:-2487921 | None:intergenic |
| CTTCGAGGAATATCTATCTC+TGG | 0.481735 | 1_2:+2488164 | Msa0049320:CDS |
| TTCAGGAACATGACAATTGT+CGG | 0.483776 | 1_2:+2489213 | Msa0049320:CDS |
| AGTAGGAGAGTAGTGGAACT+TGG | 0.490518 | 1_2:+2488889 | Msa0049320:CDS |
| GGTTTCTGTAGTATATTGGC+TGG | 0.490990 | 1_2:+2488793 | Msa0049320:CDS |
| CGGCTCACAACTCCTGGAGT+TGG | 0.492387 | 1_2:-2488754 | None:intergenic |
| AATGTTTGAACTCGGTACAT+TGG | 0.497178 | 1_2:-2488399 | None:intergenic |
| ATACCCCACTGTAAAGGATA+AGG | 0.497905 | 1_2:-2488515 | None:intergenic |
| TGTTTGTTGAAGCATCTTCG+AGG | 0.502276 | 1_2:+2488149 | Msa0049320:intron |
| AATCATGGTCATAGTGTCAC+TGG | 0.503235 | 1_2:+2488565 | Msa0049320:CDS |
| CGCTCTTATGTCCATGAACA+TGG | 0.503641 | 1_2:+2489539 | Msa0049320:CDS |
| TAGGATGGAATGGACATTCA+AGG | 0.505511 | 1_2:-2489248 | None:intergenic |
| ATTGGTTCTATTATTCACTC+TGG | 0.507159 | 1_2:+2487966 | Msa0049320:CDS |
| TGCTATACTGTGTTTCATGT+GGG | 0.512633 | 1_2:+2489137 | Msa0049320:CDS |
| AATTCAAGGCCTCCAACTCC+AGG | 0.519913 | 1_2:+2488742 | Msa0049320:CDS |
| ATGCATTGTCTACTGCTGCA+TGG | 0.523315 | 1_2:+2488483 | Msa0049320:CDS |
| CTGCTATACTGTGTTTCATG+TGG | 0.524664 | 1_2:+2489136 | Msa0049320:CDS |
| TGCATTGTCTACTGCTGCAT+GGG | 0.526144 | 1_2:+2488484 | Msa0049320:CDS |
| CTTCAGGACTTCCATAATCA+TGG | 0.529196 | 1_2:+2488550 | Msa0049320:CDS |
| AATTCCTTATCCTTTACAGT+GGG | 0.530316 | 1_2:+2488511 | Msa0049320:CDS |
| CTACTGGACAACACTGTCCC+GGG | 0.530706 | 1_2:+2489585 | Msa0049320:CDS |
| AGTATATTGGCTGGTCTTTG+GGG | 0.537211 | 1_2:+2488802 | Msa0049320:CDS |
| TTGTTGAAAATAGGATGGAA+TGG | 0.537365 | 1_2:-2489258 | None:intergenic |
| TCTACTGGACAACACTGTCC+CGG | 0.540937 | 1_2:+2489584 | Msa0049320:CDS |
| AACCCTCCAATGCAATTCCT+CGG | 0.543888 | 1_2:-2488774 | None:intergenic |
| AGCCGAGGAATTGCATTGGA+GGG | 0.544530 | 1_2:+2488772 | Msa0049320:CDS |
| CAAGTTATTGTTGCGCTCAA+CGG | 0.544576 | 1_2:-2488320 | None:intergenic |
| TTTCATGTGGGCTCTTACCG+TGG | 0.545169 | 1_2:+2489149 | Msa0049320:CDS |
| ATAGGGATACCCCACTGTAA+AGG | 0.546733 | 1_2:-2488521 | None:intergenic |
| TGGCAACTCAGTCAATCTCC+AGG | 0.561398 | 1_2:+2485530 | Msa0049320:CDS |
| AACTTGCATGGTGTTGCTGT+TGG | 0.564262 | 1_2:+2489700 | Msa0049320:CDS |
| TCCAAGCAAATACCAGCTTG+TGG | 0.564734 | 1_2:-2487922 | None:intergenic |
| GAGCCGAGGAATTGCATTGG+AGG | 0.566036 | 1_2:+2488771 | Msa0049320:CDS |
| AGCAGCCAAGGCCTGTGGAA+TGG | 0.570357 | 1_2:-2489115 | None:intergenic |
| AGTTACGGTTTCCCACAAGC+TGG | 0.571863 | 1_2:+2487910 | Msa0049320:CDS |
| TGTGAGCCGAGGAATTGCAT+TGG | 0.574624 | 1_2:+2488768 | Msa0049320:CDS |
| CAGTTATCTTGTTCCTTATG+CGG | 0.574780 | 1_2:+2489310 | Msa0049320:CDS |
| ACACAGTATAGCAGCAGCCA+AGG | 0.577141 | 1_2:-2489127 | None:intergenic |
| GGTGGCAAGTAGGAGAGTAG+TGG | 0.580576 | 1_2:+2488882 | Msa0049320:CDS |
| AGATTGCAGCGAGGCATCCG+CGG | 0.585119 | 1_2:-2489658 | None:intergenic |
| TGGTATTGTTGAAAATAGGA+TGG | 0.586767 | 1_2:-2489263 | None:intergenic |
| ACATCACAAAGGTGGCAAGT+AGG | 0.589236 | 1_2:+2488872 | Msa0049320:CDS |
| CTTTACCTACAAATGAGAAG+AGG | 0.593632 | 1_2:-2488927 | None:intergenic |
| GTATAAGACTTGACTCAGGC+TGG | 0.598503 | 1_2:-2489283 | None:intergenic |
| AAACCTACAGCAGCAACCGT+TGG | 0.601364 | 1_2:-2487877 | None:intergenic |
| TAGGTTAATCAACCCTGTTG+TGG | 0.603357 | 1_2:+2487849 | Msa0049320:intron |
| TGATTATGGAAGTCCTGAAG+TGG | 0.603711 | 1_2:-2488547 | None:intergenic |
| CACAATTAACATCACAAAGG+TGG | 0.604324 | 1_2:+2488864 | Msa0049320:CDS |
| AGGCCTGTGGAATGGAAGCA+AGG | 0.607804 | 1_2:-2489107 | None:intergenic |
| AAGAACGAGGAGTGTATACA+TGG | 0.615795 | 1_2:+2489616 | Msa0049320:CDS |
| AGTCGATAGGCCCAATGCCA+CGG | 0.617446 | 1_2:-2489166 | None:intergenic |
| GAATTCCTTATCCTTTACAG+TGG | 0.622024 | 1_2:+2488510 | Msa0049320:CDS |
| CATGGTGGTTACACTGTTGG+TGG | 0.626703 | 1_2:+2489557 | Msa0049320:CDS |
| GAACATGGTGGTTACACTGT+TGG | 0.627072 | 1_2:+2489554 | Msa0049320:CDS |
| TGCAGCAGTAGACAATGCAT+CGG | 0.629989 | 1_2:-2488480 | None:intergenic |
| GACCATACTGTAAAGTCGAT+AGG | 0.637354 | 1_2:-2489179 | None:intergenic |
| GCATAAGGAACAAGATAACT+GGG | 0.640702 | 1_2:-2489308 | None:intergenic |
| ATAGCAGCAGCCAAGGCCTG+TGG | 0.643514 | 1_2:-2489120 | None:intergenic |
| GGCAGTATAAGACTTGACTC+AGG | 0.653391 | 1_2:-2489287 | None:intergenic |
| TCAGTAAGAATGTTTGAACT+CGG | 0.663142 | 1_2:-2488407 | None:intergenic |
| ATTCCTTATCCTTTACAGTG+GGG | 0.666964 | 1_2:+2488512 | Msa0049320:CDS |
| ATATACCATGAAGCATTGCA+GGG | 0.667424 | 1_2:+2488448 | Msa0049320:CDS |
| ACTCCAGGAGTTGTGAGCCG+AGG | 0.668659 | 1_2:+2488757 | Msa0049320:CDS |
| CCGTTGGCGCAACCACAACA+GGG | 0.681677 | 1_2:-2487861 | None:intergenic |
| CCGGGAAGTAAACAAGAACG+AGG | 0.685706 | 1_2:+2489603 | Msa0049320:CDS |
| GAGAGCTGAAGACATTGCCG+CGG | 0.710630 | 1_2:+2489641 | Msa0049320:CDS |
| GCACACAATTAACATCACAA+AGG | 0.716995 | 1_2:+2488861 | Msa0049320:CDS |
| GGAATATTCAGATTGCAGCG+AGG | 0.745841 | 1_2:-2489667 | None:intergenic |
| TCTTATGTCCATGAACATGG+TGG | 0.757467 | 1_2:+2489542 | Msa0049320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATTTTTTTTTTTTTTTTGA+GGG | - | chr1_2:2486209-2486228 | None:intergenic | 10.0% |
| !!! | TGATTTTTTTTTTTTTTTTG+AGG | - | chr1_2:2486210-2486229 | None:intergenic | 10.0% |
| !! | TAAAATTAATATTTATACCT+AGG | - | chr1_2:2486555-2486574 | None:intergenic | 10.0% |
| !! | ATTATTAATAGTATTATGTT+TGG | - | chr1_2:2486750-2486769 | None:intergenic | 10.0% |
| !!! | TTTGTTAAAATTTTATCATT+TGG | - | chr1_2:2487359-2487378 | None:intergenic | 10.0% |
| !! | AAGACTAATAAATAATAATA+AGG | - | chr1_2:2487644-2487663 | None:intergenic | 10.0% |
| !!! | AATTGTATTTTTTATTTTGT+AGG | + | chr1_2:2489069-2489088 | Msa0049320:intron | 10.0% |
| !! | TAAATCTTTCCATAAAAAAA+TGG | + | chr1_2:2486247-2486266 | Msa0049320:intron | 15.0% |
| !! | ACAATACATTATAATATACA+GGG | + | chr1_2:2486631-2486650 | Msa0049320:intron | 15.0% |
| !!! | GTGTTAGTAATATTTTTTTT+AGG | - | chr1_2:2486786-2486805 | None:intergenic | 15.0% |
| !! | TATTGCTTAAAAAAAATTGT+TGG | - | chr1_2:2486818-2486837 | None:intergenic | 15.0% |
| !!! | CTTCTATTTTGATTAATATT+AGG | - | chr1_2:2486943-2486962 | None:intergenic | 15.0% |
| !! | AATTACATTTAAATATTTGC+AGG | + | chr1_2:2488295-2488314 | Msa0049320:intron | 15.0% |
| !!! | ATCATATTTACATTTTTAGA+TGG | + | chr1_2:2488611-2488630 | Msa0049320:intron | 15.0% |
| !! | ATAATATAATTCTGCAATTA+TGG | - | chr1_2:2488976-2488995 | None:intergenic | 15.0% |
| !!! | TAAATTCTAAAATGTGAGAA+TGG | + | chr1_2:2485649-2485668 | Msa0049320:intron | 20.0% |
| !!! | CATTCTCTTTTTAAGTTAAA+AGG | - | chr1_2:2485818-2485837 | None:intergenic | 20.0% |
| !!! | GAAAATTTTGTGATGAAATA+TGG | + | chr1_2:2485915-2485934 | Msa0049320:intron | 20.0% |
| !! | ATACAAAAGTTAAGTTAACT+TGG | - | chr1_2:2486110-2486129 | None:intergenic | 20.0% |
| !!! | AAAAAAGAAGAGTATGAATT+TGG | - | chr1_2:2486278-2486297 | None:intergenic | 20.0% |
| !! | NNNNNNNNNTGTTTGCCTTT+GGG | - | chr1_2:2486359-2486378 | None:intergenic | 20.0% |
| !! | NNNNNNNNNNTGTTTGCCTT+TGG | - | chr1_2:2486360-2486379 | None:intergenic | 20.0% |
| !! | NNNNNNNNTGACATTTGAGA+TGG | + | chr1_2:2486462-2486481 | Msa0049320:intron | 20.0% |
| !! | TGGTTGTATACAAAAAAAAA+AGG | + | chr1_2:2486521-2486540 | Msa0049320:intron | 20.0% |
| !! | GACAATACATTATAATATAC+AGG | + | chr1_2:2486630-2486649 | Msa0049320:intron | 20.0% |
| !! | AGCAAATAAGTATAATGTAT+GGG | - | chr1_2:2486671-2486690 | None:intergenic | 20.0% |
| !! | AAGCAAATAAGTATAATGTA+TGG | - | chr1_2:2486672-2486691 | None:intergenic | 20.0% |
| !! | CATTATACTTATTTGCTTAA+AGG | + | chr1_2:2486674-2486693 | Msa0049320:intron | 20.0% |
| !! | AAATTGAAAGAACAAGAAAA+AGG | + | chr1_2:2487138-2487157 | Msa0049320:intron | 20.0% |
| !! | AAGATATGAAAATTAATCCT+AGG | - | chr1_2:2487619-2487638 | None:intergenic | 20.0% |
| !!! | TATTGATAATAAGATGATAC+AGG | - | chr1_2:2487688-2487707 | None:intergenic | 20.0% |
| !!! | ATTGAACTTTTATCAATAAG+AGG | + | chr1_2:2487783-2487802 | Msa0049320:intron | 20.0% |
| !!! | TCATAAGTGTTTGTTATTTT+AGG | - | chr1_2:2488276-2488295 | None:intergenic | 20.0% |
| !! | AAATATTTGAACTTCAATTC+AGG | - | chr1_2:2489023-2489042 | None:intergenic | 20.0% |
| !! | GTTCAAATATTTCTTTATAC+AGG | + | chr1_2:2489031-2489050 | Msa0049320:intron | 20.0% |
| !!! | TTTTTATTTTGTAGGAAAAG+TGG | + | chr1_2:2489077-2489096 | Msa0049320:intron | 20.0% |
| !!! | TTTTATTTTGTAGGAAAAGT+GGG | + | chr1_2:2489078-2489097 | Msa0049320:intron | 20.0% |
| !!! | TTTTAAGTAATACTACAATG+AGG | - | chr1_2:2489410-2489429 | None:intergenic | 20.0% |
| !!! | TACTTAAAAACTTGTTTAGA+CGG | + | chr1_2:2489421-2489440 | Msa0049320:intron | 20.0% |
| !! | TATTACTAGCAACATTAAAT+TGG | + | chr1_2:2489813-2489832 | Msa0049320:three_prime_UTR | 20.0% |
| !! | TATGCTCTATGTCTTATTAT+AGG | + | chr1_2:2485558-2485577 | Msa0049320:intron | 25.0% |
| !! | ATGCTCTATGTCTTATTATA+GGG | + | chr1_2:2485559-2485578 | Msa0049320:intron | 25.0% |
| !! | TTCAGGGAATAAATTTTATC+TGG | - | chr1_2:2485683-2485702 | None:intergenic | 25.0% |
| ! | TACAATACAACATAAATCCA+AGG | - | chr1_2:2485707-2485726 | None:intergenic | 25.0% |
| ! | AACAGTTCAACAAATAGTAA+AGG | + | chr1_2:2485879-2485898 | Msa0049320:intron | 25.0% |
| ! | CTATTATCCTTAAAACAAGT+AGG | - | chr1_2:2485965-2485984 | None:intergenic | 25.0% |
| ! | CTAAATAGTCCGATATTAAT+TGG | + | chr1_2:2486154-2486173 | Msa0049320:intron | 25.0% |
| ! | TTTGCGAATCCAATTAATAT+CGG | - | chr1_2:2486166-2486185 | None:intergenic | 25.0% |
| ! | TACATAAAACATGACATCAA+TGG | + | chr1_2:2486501-2486520 | Msa0049320:intron | 25.0% |
| ! | ATTATAATATACAGGGATCA+GGG | + | chr1_2:2486638-2486657 | Msa0049320:intron | 25.0% |
| ! | GCAAATAAGTATAATGTATG+GGG | - | chr1_2:2486670-2486689 | None:intergenic | 25.0% |
| ! | TAATAGTATTATGTTTGGAG+TGG | - | chr1_2:2486745-2486764 | None:intergenic | 25.0% |
| !!! | AGAAAGAATTACTTTTTCTC+TGG | + | chr1_2:2486911-2486930 | Msa0049320:intron | 25.0% |
| !! | GTAGTAGTTAGTTTAATTGA+AGG | - | chr1_2:2487102-2487121 | None:intergenic | 25.0% |
| ! | ATGGTTGAATATAAAGCAAA+AGG | - | chr1_2:2487293-2487312 | None:intergenic | 25.0% |
| ! | TTGTAAACTTCTATGTTATG+AGG | - | chr1_2:2487407-2487426 | None:intergenic | 25.0% |
| !! | NNNNNNNTAGTTTGTCCCTT+AGG | + | chr1_2:2487563-2487582 | Msa0049320:intron | 25.0% |
| !! | NNNNNNTAGTTTGTCCCTTA+GGG | + | chr1_2:2487564-2487583 | Msa0049320:intron | 25.0% |
| ! | ATAATAAGATGATACAGGTT+TGG | - | chr1_2:2487683-2487702 | None:intergenic | 25.0% |
| ! | AACTATTTACAATTTGTCGT+AGG | + | chr1_2:2487830-2487849 | Msa0049320:intron | 25.0% |
| !! | TTATCTGAATAGTTTTCTCA+TGG | + | chr1_2:2488022-2488041 | Msa0049320:intron | 25.0% |
| ! | CTTGATTTATAAACATGTCA+CGG | + | chr1_2:2488066-2488085 | Msa0049320:intron | 25.0% |
| ! | AACAAGACAAAAAGAAGAAA+TGG | - | chr1_2:2488133-2488152 | None:intergenic | 25.0% |
| ! | AGCGTATAATTAAATACAGT+TGG | + | chr1_2:2489448-2489467 | Msa0049320:intron | 25.0% |
| AAATTTATTCCCTGAATCCT+TGG | + | chr1_2:2485687-2485706 | Msa0049320:intron | 30.0% | |
| AACATAAATCCAAGGATTCA+GGG | - | chr1_2:2485699-2485718 | None:intergenic | 30.0% | |
| TATCAAGCAAAGGGAAAATA+TGG | - | chr1_2:2485749-2485768 | None:intergenic | 30.0% | |
| ACAAGTGAATATCAAGCAAA+GGG | - | chr1_2:2485758-2485777 | None:intergenic | 30.0% | |
| AACAAGTGAATATCAAGCAA+AGG | - | chr1_2:2485759-2485778 | None:intergenic | 30.0% | |
| TTTGTGATGAAATATGGTGA+AGG | + | chr1_2:2485921-2485940 | Msa0049320:intron | 30.0% | |
| ATGAAATATGGTGAAGGATT+AGG | + | chr1_2:2485927-2485946 | Msa0049320:intron | 30.0% | |
| CAACAAAAGTTGTCTTCTAT+TGG | + | chr1_2:2485994-2486013 | Msa0049320:intron | 30.0% | |
| ! | GGTTCAGCATTTTATATTTC+TGG | + | chr1_2:2486015-2486034 | Msa0049320:intron | 30.0% |
| !!! | CAGCATTTTATATTTCTGGT+AGG | + | chr1_2:2486019-2486038 | Msa0049320:intron | 30.0% |
| !! | TTTGAGGCTTTTATGAATCA+AGG | - | chr1_2:2486069-2486088 | None:intergenic | 30.0% |
| !! | ACGGTTTAAGCATTATTTTG+AGG | - | chr1_2:2486085-2486104 | None:intergenic | 30.0% |
| ! | AAGTTAAGTTAACTTGGACA+CGG | - | chr1_2:2486104-2486123 | None:intergenic | 30.0% |
| AGATTATGTGATTGTCAATG+CGG | - | chr1_2:2486136-2486155 | None:intergenic | 30.0% | |
| !!! | TTGGACTGTCCATTTTTTTA+TGG | - | chr1_2:2486259-2486278 | None:intergenic | 30.0% |
| ATTCGTTCTTTGCAAACTAT+AGG | + | chr1_2:2486577-2486596 | Msa0049320:intron | 30.0% | |
| TTCGTTCTTTGCAAACTATA+GGG | + | chr1_2:2486578-2486597 | Msa0049320:intron | 30.0% | |
| CATTATAATATACAGGGATC+AGG | + | chr1_2:2486637-2486656 | Msa0049320:intron | 30.0% | |
| ACTAGCATACTAAAAAAAGC+AGG | + | chr1_2:2486709-2486728 | Msa0049320:intron | 30.0% | |
| AACAGATATATTACGTGCAT+AGG | + | chr1_2:2486991-2487010 | Msa0049320:intron | 30.0% | |
| TTAGATTCACACATTATGTG+TGG | - | chr1_2:2487048-2487067 | None:intergenic | 30.0% | |
| ! | TTTCATTAATGCAGGTGTTT+TGG | - | chr1_2:2487336-2487355 | None:intergenic | 30.0% |
| ! | TCATTTGGTTTCATTAATGC+AGG | - | chr1_2:2487344-2487363 | None:intergenic | 30.0% |
| CTTATCTTAGATCATTTCCT+AGG | + | chr1_2:2487599-2487618 | Msa0049320:intron | 30.0% | |
| AATAGAACCAATGCAATTTG+TGG | - | chr1_2:2487958-2487977 | None:intergenic | 30.0% | |
| !! | ATTGGTTCTATTATTCACTC+TGG | + | chr1_2:2487966-2487985 | Msa0049320:CDS | 30.0% |
| CAGCATAAATTCGAAATAAG+TGG | - | chr1_2:2488193-2488212 | None:intergenic | 30.0% | |
| TCAGTAAGAATGTTTGAACT+CGG | - | chr1_2:2488410-2488429 | None:intergenic | 30.0% | |
| AATTCCTTATCCTTTACAGT+GGG | + | chr1_2:2488511-2488530 | Msa0049320:CDS | 30.0% | |
| TTGTTGAAAATAGGATGGAA+TGG | - | chr1_2:2489261-2489280 | None:intergenic | 30.0% | |
| TGGTATTGTTGAAAATAGGA+TGG | - | chr1_2:2489266-2489285 | None:intergenic | 30.0% | |
| ! | AAAATCAAGCTGACAAGTTT+TGG | - | chr1_2:2489511-2489530 | None:intergenic | 30.0% |
| CACTTCTGACATTAACAAAA+AGG | + | chr1_2:2489744-2489763 | Msa0049320:three_prime_UTR | 30.0% | |
| ATTGCAGATCATGAAGAAAA+AGG | + | chr1_2:2489768-2489787 | Msa0049320:three_prime_UTR | 30.0% | |
| GACATAGAGCATAATTAACC+TGG | - | chr1_2:2485551-2485570 | None:intergenic | 35.0% | |
| ATTGCTCACAAAAGTTAGTG+TGG | + | chr1_2:2485582-2485601 | Msa0049320:intron | 35.0% | |
| TTATTAGAAGTCAACTGAGC+AGG | - | chr1_2:2485613-2485632 | None:intergenic | 35.0% | |
| CAACATAAATCCAAGGATTC+AGG | - | chr1_2:2485700-2485719 | None:intergenic | 35.0% | |
| !!! | TCAGTGACCTACTTGTTTTA+AGG | + | chr1_2:2485955-2485974 | Msa0049320:intron | 35.0% |
| ! | CAAGGCATTATTACGTACAA+TGG | - | chr1_2:2486051-2486070 | None:intergenic | 35.0% |
| GATTATGTGATTGTCAATGC+GGG | - | chr1_2:2486135-2486154 | None:intergenic | 35.0% | |
| ! | AAAAAAAGGCATGAAAGCCT+AGG | + | chr1_2:2486535-2486554 | Msa0049320:intron | 35.0% |
| TTTGCAAACTATAGGGATCA+GGG | + | chr1_2:2486585-2486604 | Msa0049320:intron | 35.0% | |
| TTCCATAAGTGTAGTTCAGT+TGG | + | chr1_2:2486963-2486982 | Msa0049320:intron | 35.0% | |
| TACCAACTGAACTACACTTA+TGG | - | chr1_2:2486968-2486987 | None:intergenic | 35.0% | |
| GATATATTACGTGCATAGGT+CGG | + | chr1_2:2486995-2487014 | Msa0049320:intron | 35.0% | |
| GAAGGAATAGAAGAAAAGAG+AGG | - | chr1_2:2487084-2487103 | None:intergenic | 35.0% | |
| AGATTGAAAACTGACCCTAA+GGG | - | chr1_2:2487581-2487600 | None:intergenic | 35.0% | |
| AAGATTGAAAACTGACCCTA+AGG | - | chr1_2:2487582-2487601 | None:intergenic | 35.0% | |
| GTTGTGGGACATTAGATAAA+AGG | - | chr1_2:2487741-2487760 | None:intergenic | 35.0% | |
| !! | ATTGCTTTTGCTGAAGTTGT+GGG | - | chr1_2:2487756-2487775 | None:intergenic | 35.0% |
| ATGTTTGAACTCGGTACATT+GGG | - | chr1_2:2488401-2488420 | None:intergenic | 35.0% | |
| AATGTTTGAACTCGGTACAT+TGG | - | chr1_2:2488402-2488421 | None:intergenic | 35.0% | |
| !! | ATATACCATGAAGCATTGCA+GGG | + | chr1_2:2488448-2488467 | Msa0049320:CDS | 35.0% |
| GAATTCCTTATCCTTTACAG+TGG | + | chr1_2:2488510-2488529 | Msa0049320:CDS | 35.0% | |
| ATTCCTTATCCTTTACAGTG+GGG | + | chr1_2:2488512-2488531 | Msa0049320:CDS | 35.0% | |
| AAGTCCTGAAGTGGAAAATA+GGG | - | chr1_2:2488541-2488560 | None:intergenic | 35.0% | |
| TGACACTATGACCATGATTA+TGG | - | chr1_2:2488564-2488583 | None:intergenic | 35.0% | |
| ATAAGTTCCAACCTGCAAAA+AGG | - | chr1_2:2488701-2488720 | None:intergenic | 35.0% | |
| ! | CGTCACTTCAAGTTAATTCA+AGG | + | chr1_2:2488728-2488747 | Msa0049320:CDS | 35.0% |
| !! | TAGTATATTGGCTGGTCTTT+GGG | + | chr1_2:2488801-2488820 | Msa0049320:CDS | 35.0% |
| GCACACAATTAACATCACAA+AGG | + | chr1_2:2488861-2488880 | Msa0049320:CDS | 35.0% | |
| CACAATTAACATCACAAAGG+TGG | + | chr1_2:2488864-2488883 | Msa0049320:CDS | 35.0% | |
| TTGATCCTCTTCTCATTTGT+AGG | + | chr1_2:2488922-2488941 | Msa0049320:CDS | 35.0% | |
| CTTTACCTACAAATGAGAAG+AGG | - | chr1_2:2488930-2488949 | None:intergenic | 35.0% | |
| GTAGGTAAAGTAACAACACT+TGG | + | chr1_2:2488940-2488959 | Msa0049320:intron | 35.0% | |
| AATTCTGCAATTATGGACGT+TGG | - | chr1_2:2488969-2488988 | None:intergenic | 35.0% | |
| TGCTATACTGTGTTTCATGT+GGG | + | chr1_2:2489137-2489156 | Msa0049320:CDS | 35.0% | |
| TTCAGGAACATGACAATTGT+CGG | + | chr1_2:2489213-2489232 | Msa0049320:CDS | 35.0% | |
| AGGCTGGTATTGTTGAAAAT+AGG | - | chr1_2:2489270-2489289 | None:intergenic | 35.0% | |
| GCATAAGGAACAAGATAACT+GGG | - | chr1_2:2489311-2489330 | None:intergenic | 35.0% | |
| CAGTTATCTTGTTCCTTATG+CGG | + | chr1_2:2489310-2489329 | Msa0049320:CDS | 35.0% | |
| ! | TTACTTGTTTAAGGCCTGAA+TGG | - | chr1_2:2489355-2489374 | None:intergenic | 35.0% |
| CGACATGACTTACTTGTTTA+AGG | - | chr1_2:2489364-2489383 | None:intergenic | 35.0% | |
| !!! | CAACACCATGCAAGTTTTTT+TGG | - | chr1_2:2489696-2489715 | None:intergenic | 35.0% |
| CTTTGCAAACTATAGGGATC+AGG | + | chr1_2:2486584-2486603 | Msa0049320:intron | 40.0% | |
| ACATTATGTGTGGAGAAGTC+AGG | - | chr1_2:2487038-2487057 | None:intergenic | 40.0% | |
| GAAACTGAGAGTGAAGATGA+TGG | - | chr1_2:2487238-2487257 | None:intergenic | 40.0% | |
| CAACCATTTCTTCATCACTG+TGG | + | chr1_2:2487306-2487325 | Msa0049320:intron | 40.0% | |
| CATCCACAGTGATGAAGAAA+TGG | - | chr1_2:2487312-2487331 | None:intergenic | 40.0% | |
| CATTTCTTCATCACTGTGGA+TGG | + | chr1_2:2487310-2487329 | Msa0049320:intron | 40.0% | |
| !! | CATTGCTTTTGCTGAAGTTG+TGG | - | chr1_2:2487757-2487776 | None:intergenic | 40.0% |
| TAGGTTAATCAACCCTGTTG+TGG | + | chr1_2:2487849-2487868 | Msa0049320:intron | 40.0% | |
| GGTTTAGCGTTCTTCAGTTA+CGG | + | chr1_2:2487895-2487914 | Msa0049320:CDS | 40.0% | |
| CACTGTTCCACAAATTGCAT+TGG | + | chr1_2:2487948-2487967 | Msa0049320:CDS | 40.0% | |
| ATAACTGAAGAACCCTGCAT+TGG | - | chr1_2:2488006-2488025 | None:intergenic | 40.0% | |
| ! | TGTTTGTTGAAGCATCTTCG+AGG | + | chr1_2:2488149-2488168 | Msa0049320:intron | 40.0% |
| CTTCGAGGAATATCTATCTC+TGG | + | chr1_2:2488164-2488183 | Msa0049320:CDS | 40.0% | |
| CAAGTTATTGTTGCGCTCAA+CGG | - | chr1_2:2488323-2488342 | None:intergenic | 40.0% | |
| ! | TTTGCATCCCTTTTAACAGC+TGG | + | chr1_2:2488347-2488366 | Msa0049320:CDS | 40.0% |
| ! | TTGCATCCCTTTTAACAGCT+GGG | + | chr1_2:2488348-2488367 | Msa0049320:CDS | 40.0% |
| !! | CATATACCATGAAGCATTGC+AGG | + | chr1_2:2488447-2488466 | Msa0049320:CDS | 40.0% |
| ATACCCCACTGTAAAGGATA+AGG | - | chr1_2:2488518-2488537 | None:intergenic | 40.0% | |
| ! | GTATCCCTATTTTCCACTTC+AGG | + | chr1_2:2488534-2488553 | Msa0049320:CDS | 40.0% |
| GAAGTCCTGAAGTGGAAAAT+AGG | - | chr1_2:2488542-2488561 | None:intergenic | 40.0% | |
| TGATTATGGAAGTCCTGAAG+TGG | - | chr1_2:2488550-2488569 | None:intergenic | 40.0% | |
| CTTCAGGACTTCCATAATCA+TGG | + | chr1_2:2488550-2488569 | Msa0049320:CDS | 40.0% | |
| AATCATGGTCATAGTGTCAC+TGG | + | chr1_2:2488565-2488584 | Msa0049320:CDS | 40.0% | |
| ! | ACTGGTTGCTTCTGTTGATT+CGG | + | chr1_2:2488583-2488602 | Msa0049320:CDS | 40.0% |
| ! | AAAGCAAGTATCGCATTCAG+TGG | + | chr1_2:2488646-2488665 | Msa0049320:intron | 40.0% |
| !!! | CACTGGTTTATCCTTTTTGC+AGG | + | chr1_2:2488687-2488706 | Msa0049320:intron | 40.0% |
| ! | GGTTTATCCTTTTTGCAGGT+TGG | + | chr1_2:2488691-2488710 | Msa0049320:intron | 40.0% |
| GGAGGGTTTCTGTAGTATAT+TGG | + | chr1_2:2488789-2488808 | Msa0049320:CDS | 40.0% | |
| GGTTTCTGTAGTATATTGGC+TGG | + | chr1_2:2488793-2488812 | Msa0049320:CDS | 40.0% | |
| !! | GTAGTATATTGGCTGGTCTT+TGG | + | chr1_2:2488800-2488819 | Msa0049320:CDS | 40.0% |
| !! | AGTATATTGGCTGGTCTTTG+GGG | + | chr1_2:2488802-2488821 | Msa0049320:CDS | 40.0% |
| TTCTGTCAAAGTCGTTGAAC+CGG | - | chr1_2:2488836-2488855 | None:intergenic | 40.0% | |
| CTGCTATACTGTGTTTCATG+TGG | + | chr1_2:2489136-2489155 | Msa0049320:CDS | 40.0% | |
| GACCATACTGTAAAGTCGAT+AGG | - | chr1_2:2489182-2489201 | None:intergenic | 40.0% | |
| TAGGATGGAATGGACATTCA+AGG | - | chr1_2:2489251-2489270 | None:intergenic | 40.0% | |
| CGCATAAGGAACAAGATAAC+TGG | - | chr1_2:2489312-2489331 | None:intergenic | 40.0% | |
| ! | TGTTTAAGGCCTGAATGGAA+TGG | - | chr1_2:2489350-2489369 | None:intergenic | 40.0% |
| TCTTATGTCCATGAACATGG+TGG | + | chr1_2:2489542-2489561 | Msa0049320:CDS | 40.0% | |
| ! | AAGAACGAGGAGTGTATACA+TGG | + | chr1_2:2489616-2489635 | Msa0049320:CDS | 40.0% |
| !!! | CCATGCAAGTTTTTTTGGCA+GGG | - | chr1_2:2489691-2489710 | None:intergenic | 40.0% |
| !!! | ACCATGCAAGTTTTTTTGGC+AGG | - | chr1_2:2489692-2489711 | None:intergenic | 40.0% |
| ! | TTGCTGTTGGTTGAAGTGAT+TGG | + | chr1_2:2489713-2489732 | Msa0049320:exon | 40.0% |
| ! | TGCTGTTGGTTGAAGTGATT+GGG | + | chr1_2:2489714-2489733 | Msa0049320:exon | 40.0% |
| GTGTGGAGAAGTCAGGAATT+TGG | - | chr1_2:2487031-2487050 | None:intergenic | 45.0% | |
| CCAAGCAAATACCAGCTTGT+GGG | - | chr1_2:2487924-2487943 | None:intergenic | 45.0% | |
| TCCAAGCAAATACCAGCTTG+TGG | - | chr1_2:2487925-2487944 | None:intergenic | 45.0% | |
| AGTCATGCAGTACCAATGCA+GGG | + | chr1_2:2487991-2488010 | Msa0049320:intron | 45.0% | |
| CGTTGAGCGCAACAATAACT+TGG | + | chr1_2:2488321-2488340 | Msa0049320:CDS | 45.0% | |
| ! | TGCATCCCTTTTAACAGCTG+GGG | + | chr1_2:2488349-2488368 | Msa0049320:CDS | 45.0% |
| TACACCCCCAGCTGTTAAAA+GGG | - | chr1_2:2488357-2488376 | None:intergenic | 45.0% | |
| ATACACCCCCAGCTGTTAAA+AGG | - | chr1_2:2488358-2488377 | None:intergenic | 45.0% | |
| TGCAGCAGTAGACAATGCAT+CGG | - | chr1_2:2488483-2488502 | None:intergenic | 45.0% | |
| ATGCATTGTCTACTGCTGCA+TGG | + | chr1_2:2488483-2488502 | Msa0049320:CDS | 45.0% | |
| TGCATTGTCTACTGCTGCAT+GGG | + | chr1_2:2488484-2488503 | Msa0049320:CDS | 45.0% | |
| ATAGGGATACCCCACTGTAA+AGG | - | chr1_2:2488524-2488543 | None:intergenic | 45.0% | |
| GTATCAAGACTCTGAGTCAC+TGG | + | chr1_2:2488670-2488689 | Msa0049320:intron | 45.0% | |
| AACCCTCCAATGCAATTCCT+CGG | - | chr1_2:2488777-2488796 | None:intergenic | 45.0% | |
| ACATCACAAAGGTGGCAAGT+AGG | + | chr1_2:2488872-2488891 | Msa0049320:CDS | 45.0% | |
| ! | AGTAGGAGAGTAGTGGAACT+TGG | + | chr1_2:2488889-2488908 | Msa0049320:CDS | 45.0% |
| !! | GGCCTATCGACTTTACAGTA+TGG | + | chr1_2:2489177-2489196 | Msa0049320:CDS | 45.0% |
| ! | ATGGTCAATCAGCTAGCTTC+AGG | + | chr1_2:2489196-2489215 | Msa0049320:CDS | 45.0% |
| GTATAAGACTTGACTCAGGC+TGG | - | chr1_2:2489286-2489305 | None:intergenic | 45.0% | |
| GGCAGTATAAGACTTGACTC+AGG | - | chr1_2:2489290-2489309 | None:intergenic | 45.0% | |
| CGCTCTTATGTCCATGAACA+TGG | + | chr1_2:2489539-2489558 | Msa0049320:CDS | 45.0% | |
| CAGTGTAACCACCATGTTCA+TGG | - | chr1_2:2489553-2489572 | None:intergenic | 45.0% | |
| GAACATGGTGGTTACACTGT+TGG | + | chr1_2:2489554-2489573 | Msa0049320:CDS | 45.0% | |
| !! | ACTGTTGGTGGCATTTCTAC+TGG | + | chr1_2:2489569-2489588 | Msa0049320:CDS | 45.0% |
| ! | CTCGTTCTTGTTTACTTCCC+GGG | - | chr1_2:2489605-2489624 | None:intergenic | 45.0% |
| ! | CCTCGTTCTTGTTTACTTCC+CGG | - | chr1_2:2489606-2489625 | None:intergenic | 45.0% |
| GGAATATTCAGATTGCAGCG+AGG | - | chr1_2:2489670-2489689 | None:intergenic | 45.0% | |
| CCCTGCCAAAAAAACTTGCA+TGG | + | chr1_2:2489688-2489707 | Msa0049320:CDS | 45.0% | |
| !! | AACTTGCATGGTGTTGCTGT+TGG | + | chr1_2:2489700-2489719 | Msa0049320:CDS | 45.0% |
| !! | AAAAAAAAAAAAAAATCAAA+AGG | + | chr1_2:2486212-2486231 | Msa0049320:intron | 5.0% |
| TGGCAACTCAGTCAATCTCC+AGG | + | chr1_2:2485530-2485549 | Msa0049320:CDS | 50.0% | |
| AACACTCTGCTACCTCCCAA+AGG | + | chr1_2:2486341-2486360 | Msa0049320:intron | 50.0% | |
| AAACCTACAGCAGCAACCGT+TGG | - | chr1_2:2487880-2487899 | None:intergenic | 50.0% | |
| AGTTACGGTTTCCCACAAGC+TGG | + | chr1_2:2487910-2487929 | Msa0049320:CDS | 50.0% | |
| CCCACAAGCTGGTATTTGCT+TGG | + | chr1_2:2487921-2487940 | Msa0049320:CDS | 50.0% | |
| GAGTCATGCAGTACCAATGC+AGG | + | chr1_2:2487990-2488009 | Msa0049320:intron | 50.0% | |
| ! | GCATCCCTTTTAACAGCTGG+GGG | + | chr1_2:2488350-2488369 | Msa0049320:CDS | 50.0% |
| ATCAGCCCTGCAATGCTTCA+TGG | - | chr1_2:2488456-2488475 | None:intergenic | 50.0% | |
| AATTCAAGGCCTCCAACTCC+AGG | + | chr1_2:2488742-2488761 | Msa0049320:CDS | 50.0% | |
| TGTGAGCCGAGGAATTGCAT+TGG | + | chr1_2:2488768-2488787 | Msa0049320:CDS | 50.0% | |
| AGCCGAGGAATTGCATTGGA+GGG | + | chr1_2:2488772-2488791 | Msa0049320:CDS | 50.0% | |
| TCTCCTTGCTTCCATTCCAC+AGG | + | chr1_2:2489104-2489123 | Msa0049320:CDS | 50.0% | |
| ACACAGTATAGCAGCAGCCA+AGG | - | chr1_2:2489130-2489149 | None:intergenic | 50.0% | |
| TTTCATGTGGGCTCTTACCG+TGG | + | chr1_2:2489149-2489168 | Msa0049320:CDS | 50.0% | |
| TCAAGTGGGCCATTCCATTC+AGG | + | chr1_2:2489338-2489357 | Msa0049320:intron | 50.0% | |
| CATGGTGGTTACACTGTTGG+TGG | + | chr1_2:2489557-2489576 | Msa0049320:CDS | 50.0% | |
| TCTACTGGACAACACTGTCC+CGG | + | chr1_2:2489584-2489603 | Msa0049320:CDS | 50.0% | |
| CCGGGAAGTAAACAAGAACG+AGG | + | chr1_2:2489603-2489622 | Msa0049320:CDS | 50.0% | |
| CTCACAACTCCTGGAGTTGG+AGG | - | chr1_2:2488754-2488773 | None:intergenic | 55.0% | |
| ATTCCTCGGCTCACAACTCC+TGG | - | chr1_2:2488763-2488782 | None:intergenic | 55.0% | |
| GAGCCGAGGAATTGCATTGG+AGG | + | chr1_2:2488771-2488790 | Msa0049320:CDS | 55.0% | |
| !! | TTGGCTGGTCTTTGGGGTTC+AGG | + | chr1_2:2488808-2488827 | Msa0049320:CDS | 55.0% |
| !! | GGTCTTTGGGGTTCAGGTAC+CGG | + | chr1_2:2488814-2488833 | Msa0049320:CDS | 55.0% |
| GGTGGCAAGTAGGAGAGTAG+TGG | + | chr1_2:2488882-2488901 | Msa0049320:CDS | 55.0% | |
| AGGCCTGTGGAATGGAAGCA+AGG | - | chr1_2:2489110-2489129 | None:intergenic | 55.0% | |
| TGCTTCCATTCCACAGGCCT+TGG | + | chr1_2:2489110-2489129 | Msa0049320:CDS | 55.0% | |
| TGGGCTCTTACCGTGGCATT+GGG | + | chr1_2:2489156-2489175 | Msa0049320:CDS | 55.0% | |
| AGTCGATAGGCCCAATGCCA+CGG | - | chr1_2:2489169-2489188 | None:intergenic | 55.0% | |
| CTTATGCGGCAGCGTCAAGT+GGG | + | chr1_2:2489324-2489343 | Msa0049320:intron | 55.0% | |
| CTACTGGACAACACTGTCCC+GGG | + | chr1_2:2489585-2489604 | Msa0049320:CDS | 55.0% | |
| GAGAGCTGAAGACATTGCCG+CGG | + | chr1_2:2489641-2489660 | Msa0049320:CDS | 55.0% | |
| CCGTTGGCGCAACCACAACA+GGG | - | chr1_2:2487864-2487883 | None:intergenic | 60.0% | |
| CCCTGTTGTGGTTGCGCCAA+CGG | + | chr1_2:2487861-2487880 | Msa0049320:CDS | 60.0% | |
| ACCGTTGGCGCAACCACAAC+AGG | - | chr1_2:2487865-2487884 | None:intergenic | 60.0% | |
| CGGCTCACAACTCCTGGAGT+TGG | - | chr1_2:2488757-2488776 | None:intergenic | 60.0% | |
| ACTCCAGGAGTTGTGAGCCG+AGG | + | chr1_2:2488757-2488776 | Msa0049320:CDS | 60.0% | |
| AGCAGCCAAGGCCTGTGGAA+TGG | - | chr1_2:2489118-2489137 | None:intergenic | 60.0% | |
| ATAGCAGCAGCCAAGGCCTG+TGG | - | chr1_2:2489123-2489142 | None:intergenic | 60.0% | |
| GTGGGCTCTTACCGTGGCAT+TGG | + | chr1_2:2489155-2489174 | Msa0049320:CDS | 60.0% | |
| CCACTTGACGCTGCCGCATA+AGG | - | chr1_2:2489326-2489345 | None:intergenic | 60.0% | |
| CCTTATGCGGCAGCGTCAAG+TGG | + | chr1_2:2489323-2489342 | Msa0049320:intron | 60.0% | |
| ! | AGATTGCAGCGAGGCATCCG+CGG | - | chr1_2:2489661-2489680 | None:intergenic | 60.0% |
| GCGCCAACGGTTGCTGCTGT+AGG | + | chr1_2:2487874-2487893 | Msa0049320:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 2485529 | 2489890 | 2485529 | ID=Msa0049320;Name=Msa0049320 |
| chr1_2 | mRNA | 2485529 | 2489890 | 2485529 | ID=Msa0049320-mRNA-1;Parent=Msa0049320;Name=Msa0049320-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0.66|0.57|0.85|1|1|7|159|397 |
| chr1_2 | exon | 2485529 | 2485551 | 2485529 | ID=Msa0049320-mRNA-1:exon:533;Parent=Msa0049320-mRNA-1 |
| chr1_2 | exon | 2487852 | 2487987 | 2487852 | ID=Msa0049320-mRNA-1:exon:534;Parent=Msa0049320-mRNA-1 |
| chr1_2 | exon | 2488161 | 2488211 | 2488161 | ID=Msa0049320-mRNA-1:exon:535;Parent=Msa0049320-mRNA-1 |
| chr1_2 | exon | 2488317 | 2488604 | 2488317 | ID=Msa0049320-mRNA-1:exon:536;Parent=Msa0049320-mRNA-1 |
| chr1_2 | exon | 2488709 | 2488943 | 2488709 | ID=Msa0049320-mRNA-1:exon:537;Parent=Msa0049320-mRNA-1 |
| chr1_2 | exon | 2489091 | 2489341 | 2489091 | ID=Msa0049320-mRNA-1:exon:538;Parent=Msa0049320-mRNA-1 |
| chr1_2 | exon | 2489522 | 2489890 | 2489522 | ID=Msa0049320-mRNA-1:exon:539;Parent=Msa0049320-mRNA-1 |
| chr1_2 | CDS | 2485529 | 2485551 | 2485529 | ID=Msa0049320-mRNA-1:cds;Parent=Msa0049320-mRNA-1 |
| chr1_2 | CDS | 2487852 | 2487987 | 2487852 | ID=Msa0049320-mRNA-1:cds;Parent=Msa0049320-mRNA-1 |
| chr1_2 | CDS | 2488161 | 2488211 | 2488161 | ID=Msa0049320-mRNA-1:cds;Parent=Msa0049320-mRNA-1 |
| chr1_2 | CDS | 2488317 | 2488604 | 2488317 | ID=Msa0049320-mRNA-1:cds;Parent=Msa0049320-mRNA-1 |
| chr1_2 | CDS | 2488709 | 2488943 | 2488709 | ID=Msa0049320-mRNA-1:cds;Parent=Msa0049320-mRNA-1 |
| chr1_2 | CDS | 2489091 | 2489341 | 2489091 | ID=Msa0049320-mRNA-1:cds;Parent=Msa0049320-mRNA-1 |
| chr1_2 | CDS | 2489522 | 2489731 | 2489522 | ID=Msa0049320-mRNA-1:cds;Parent=Msa0049320-mRNA-1 |
| chr1_2 | three_prime_UTR | 2489732 | 2489890 | 2489732 | ID=Msa0049320-mRNA-1:three_prime_utr;Parent=Msa0049320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
