AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0841430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0841430 MtrunA17_Chr5g0412181 94.595 666 15 4 129 775 38 701 0.0 1263
Msa0841430 MtrunA17_Chr5g0412181 54.795 73 17 2 19 82 12 77 3.72e-12 70.1
Msa0841430 MtrunA17_Chr8g0367361 71.114 682 140 9 147 775 95 772 0.0 946
Msa0841430 MtrunA17_Chr2g0320981 53.162 585 246 5 218 775 99 682 0.0 607
Msa0841430 MtrunA17_Chr4g0027121 55.696 553 230 5 238 775 138 690 0.0 607
Msa0841430 MtrunA17_Chr2g0332871 49.522 523 217 5 266 775 159 647 8.13e-173 512
Msa0841430 MtrunA17_Chr8g0379171 36.226 530 291 7 253 767 20 517 1.54e-102 325
Msa0841430 MtrunA17_Chr3g0119521 36.654 532 289 8 252 767 14 513 5.27e-102 324
Msa0841430 MtrunA17_Chr2g0284061 34.411 526 298 6 257 767 24 517 2.63e-97 311
Msa0841430 MtrunA17_Chr4g0059331 34.556 518 290 6 267 767 40 525 1.78e-96 310
Msa0841430 MtrunA17_Chr3g0117941 34.942 518 288 6 267 767 40 525 1.96e-96 310
Msa0841430 MtrunA17_Chr8g0364611 35.328 518 286 7 267 767 41 526 1.23e-95 308
Msa0841430 MtrunA17_Chr5g0414131 34.297 519 291 6 267 767 45 531 2.63e-94 304
Msa0841430 MtrunA17_Chr1g0207021 31.391 532 314 8 253 767 23 520 2.02e-81 270
Msa0841430 MtrunA17_Chr3g0134911 32.710 535 299 13 270 767 68 578 2.18e-81 271
Msa0841430 MtrunA17_Chr1g0154001 32.083 533 311 7 252 767 42 540 8.81e-80 266
Msa0841430 MtrunA17_Chr5g0405471 32.463 536 283 11 270 767 61 555 3.02e-74 251
Msa0841430 MtrunA17_Chr5g0412191 79.279 111 6 2 1 94 1 111 2.19e-53 180
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0841430 AT4G38050.1 71.349 541 140 3 247 772 169 709 0.0 767
Msa0841430 AT2G27810.1 54.882 594 234 7 214 775 114 705 0.0 595
Msa0841430 AT2G27810.4 52.913 618 233 8 214 775 114 729 0.0 585
Msa0841430 AT2G27810.2 56.904 478 174 6 214 661 114 589 2.89e-161 480
Msa0841430 AT2G27810.3 56.613 431 158 5 214 617 114 542 9.91e-142 428
Msa0841430 AT1G60030.1 37.838 518 273 6 267 767 46 531 4.46e-108 341
Msa0841430 AT2G05760.1 37.218 532 286 7 252 767 14 513 1.62e-101 323
Msa0841430 AT2G34190.1 34.717 530 299 7 253 767 20 517 1.67e-98 315
Msa0841430 AT5G62890.1 35.521 518 285 6 267 767 40 525 3.67e-98 315
Msa0841430 AT5G62890.2 35.521 518 285 6 267 767 40 525 3.67e-98 315
Msa0841430 AT5G62890.3 35.521 518 285 6 267 767 40 525 3.67e-98 315
Msa0841430 AT5G49990.2 34.709 533 299 8 252 767 21 521 1.52e-95 308
Msa0841430 AT5G49990.3 34.709 533 299 8 252 767 21 521 1.52e-95 308
Msa0841430 AT5G49990.1 34.709 533 299 8 252 767 21 521 1.52e-95 308
Msa0841430 AT5G49990.4 34.709 533 299 8 252 767 21 521 1.52e-95 308
Msa0841430 AT1G10540.1 34.270 534 295 10 257 768 34 533 7.76e-93 301
Msa0841430 AT5G62890.4 36.726 452 241 6 267 705 40 459 5.02e-88 286
Msa0841430 AT1G49960.1 35.328 518 286 7 267 767 34 519 6.01e-88 287
Msa0841430 AT2G26510.1 33.396 533 303 8 253 767 44 542 4.22e-77 259
Msa0841430 AT1G65550.1 31.262 531 307 9 261 767 38 534 3.75e-75 254
Msa0841430 AT1G10540.2 34.400 375 211 6 257 616 34 388 6.80e-64 219
Msa0841430 AT2G26510.3 35.013 377 213 5 252 616 43 399 8.40e-55 194
Msa0841430 AT5G25420.1 30.266 413 205 7 270 677 59 393 1.15e-52 189
Msa0841430 AT2G26510.2 34.890 364 205 5 252 603 43 386 2.12e-51 186

Find 219 sgRNAs with CRISPR-Local

Find 456 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGACATGACTTACTTGTTTA+AGG 0.077021 5_4:+17744476 None:intergenic
TAGTATATTGGCTGGTCTTT+GGG 0.186238 5_4:-17745044 Msa0841430:CDS
TCTACAATGTTGTTTCTTTC+CGG 0.199188 5_4:-17746945 Msa0841430:CDS
TTTCCAGAAGGAGTTGAATT+TGG 0.226139 5_4:-17748784 Msa0841430:CDS
TATTACTAGCAACATTAAAT+TGG 0.243999 5_4:-17744024 Msa0841430:three_prime_UTR
GCAGTATCTCTTATCTATTA+TGG 0.244533 5_4:-17747159 Msa0841430:intron
GTAGTATATTGGCTGGTCTT+TGG 0.248801 5_4:-17745045 Msa0841430:CDS
GAAGTCCTGAAGTGGAAAAT+AGG 0.249412 5_4:+17745306 None:intergenic
TGCTTCCATTCCACAGGCCT+TGG 0.253689 5_4:-17744728 Msa0841430:CDS
TTGGCTGGTCTTTGGGGTTC+AGG 0.262793 5_4:-17745037 Msa0841430:CDS
TCTCCAAATTCAACTCCTTC+TGG 0.279848 5_4:+17748781 None:intergenic
CAACACCATGCAAGTTTCTT+TGG 0.280482 5_4:+17744144 None:intergenic
CCTCGTTCTTGTTTACTTCC+CGG 0.284283 5_4:+17744234 None:intergenic
CGTTCATGGGCTAAGAAAAC+TGG 0.287394 5_4:-17749171 Msa0841430:CDS
TTGCCCTTGGCTCAAGTGTT+TGG 0.289737 5_4:-17750203 Msa0841430:CDS
TTCAATATTCCAATGTATCT+TGG 0.297916 5_4:-17746559 Msa0841430:CDS
GGAACAAAAGGTGCAACTTT+TGG 0.299363 5_4:+17749222 None:intergenic
CACTTCTGACATTAACAAAA+AGG 0.313427 5_4:-17744093 Msa0841430:three_prime_UTR
ACCGTTGGCGCAACCACAAC+AGG 0.317314 5_4:+17745983 None:intergenic
TGACACTATGACCATGATTA+TGG 0.319148 5_4:+17745284 None:intergenic
CGCATAAGGAACAAGATAAC+TGG 0.321940 5_4:+17744528 None:intergenic
TTGCTGTTGGTTGAAGTGAT+TGG 0.324960 5_4:-17744124 Msa0841430:exon
CAATGTATCTTGGGATTTAG+TGG 0.331523 5_4:-17746549 Msa0841430:CDS
TTGATCCTCTTCTCATTTGT+AGG 0.332106 5_4:-17744923 Msa0841430:intron
ACAATCACAAGCTGGTGTTT+TGG 0.333614 5_4:-17749007 Msa0841430:CDS
GTGGGCTCTTACCGTGGCAT+TGG 0.337955 5_4:-17744683 Msa0841430:CDS
CTTAAAGAAAATCCGGGTTT+AGG 0.338465 5_4:-17748721 Msa0841430:intron
ATTGCAGATCATGAAGAAAA+AGG 0.345314 5_4:-17744069 Msa0841430:three_prime_UTR
GTTGGATCTATCTCTATCTT+AGG 0.353421 5_4:+17749057 None:intergenic
TGCTGTTGGTTGAAGTGATT+GGG 0.353798 5_4:-17744123 Msa0841430:exon
ACTATACTGCACTCTTACTT+TGG 0.354542 5_4:-17746915 Msa0841430:CDS
GGTCTTTGGGGTTCAGGTAC+CGG 0.358878 5_4:-17745031 Msa0841430:CDS
TGCCCTTGGCTCAAGTGTTT+GGG 0.360130 5_4:-17750202 Msa0841430:CDS
GGAGGGTTTCTGTAGTATAT+TGG 0.361128 5_4:-17745056 Msa0841430:CDS
ATGACTGGTACCATGACTAA+TGG 0.362103 5_4:+17747093 None:intergenic
ATCAGCCCTGCAATGCTTCA+TGG 0.374512 5_4:+17745392 None:intergenic
CATATACCATGAAGCATTGC+AGG 0.376910 5_4:-17745398 Msa0841430:CDS
GCCCATGAACGTAATTCTCT+TGG 0.376998 5_4:+17749183 None:intergenic
TCAATATTCCAATGTATCTT+GGG 0.377573 5_4:-17746558 Msa0841430:CDS
TTTGGATTGTGATCAGTGTT+TGG 0.379217 5_4:+17750427 None:intergenic
CAGTGTAACCACCATGTTCA+TGG 0.386977 5_4:+17744287 None:intergenic
ATAGAGAAAGATTCAATTGT+GGG 0.389710 5_4:-17750277 Msa0841430:CDS
TCAAGTGGGCCATTCCATTC+AGG 0.393498 5_4:-17744499 Msa0841430:CDS
CTTCAAGGTGCTATAATTGT+TGG 0.396001 5_4:-17746582 Msa0841430:CDS
AGGCTGGTATTGTTGAAAAT+AGG 0.398406 5_4:+17744570 None:intergenic
TGGGCTCTTACCGTGGCATT+GGG 0.399078 5_4:-17744682 Msa0841430:CDS
GAGAGGAAAGTTGGTTTAAG+AGG 0.401648 5_4:-17748931 Msa0841430:CDS
ATTCCTCGGCTCACAACTCC+TGG 0.404762 5_4:+17745085 None:intergenic
TTACTTGTTTAAGGCCTGAA+TGG 0.405824 5_4:+17744485 None:intergenic
GTGTGGACTTAAAGAAAATC+CGG 0.409950 5_4:-17748728 Msa0841430:CDS
ACTGTTGGTGGCATTTCTAC+TGG 0.415195 5_4:-17744268 Msa0841430:CDS
CGTCACTTCAAGTTAATTCA+AGG 0.416440 5_4:-17745117 Msa0841430:CDS
CGTTGAGCGCAACAATAACT+TGG 0.418430 5_4:-17745524 Msa0841430:CDS
TTCTGTCAAAGTCGTTGAAC+CGG 0.418532 5_4:+17745012 None:intergenic
CCCTGTTGTGGTTGCGCCAA+CGG 0.418704 5_4:-17745984 Msa0841430:CDS
ATGTTTGAACTCGGTACATT+GGG 0.420675 5_4:+17745447 None:intergenic
CCACTTGACGCTGCCGCATA+AGG 0.423290 5_4:+17744514 None:intergenic
ACCATGCAAGTTTCTTTGGC+AGG 0.423585 5_4:+17744148 None:intergenic
CACTGTTCCACAAATTGCAT+TGG 0.423678 5_4:-17745897 Msa0841430:CDS
AAACAACATTGTAGAAATTA+CGG 0.423737 5_4:+17746953 None:intergenic
TCACCATTCAAAGGCAAAAC+AGG 0.425968 5_4:+17748958 None:intergenic
ATGGTCAATCAGCTAGCTTC+AGG 0.426770 5_4:-17744642 Msa0841430:intron
CCCTTGCACTAAAGGAAGTC+GGG 0.431146 5_4:+17746890 None:intergenic
TGAGTAATCAAGTACAAAAT+CGG 0.431173 5_4:+17750378 None:intergenic
GGTTTAGCGTTCTTCAGTTA+CGG 0.431955 5_4:-17745950 Msa0841430:CDS
TTATAAATGCTCAAGAATAT+CGG 0.433551 5_4:-17746833 Msa0841430:CDS
AAGTCCTGAAGTGGAAAATA+GGG 0.433703 5_4:+17745307 None:intergenic
TGACTGGTACCATGACTAAT+GGG 0.437934 5_4:+17747094 None:intergenic
CCCACAAGCTGGTATTTGCT+TGG 0.438042 5_4:-17745924 Msa0841430:CDS
AATAGAACCAATGCAATTTG+TGG 0.438702 5_4:+17745890 None:intergenic
CTTGATTACTCAGGAGAAGC+AGG 0.442318 5_4:-17750367 Msa0841430:CDS
ACTGGTTGCTTCTGTTGATT+CGG 0.443347 5_4:-17745262 Msa0841430:intron
AACGAGCTCCCTTGCACTAA+AGG 0.444458 5_4:+17746882 None:intergenic
CCCATGAACGTAATTCTCTT+GGG 0.446265 5_4:+17749184 None:intergenic
TCTGATTATTCAGGTGAAGC+AGG 0.448658 5_4:-17749141 Msa0841430:intron
CTCGTTCTTGTTTACTTCCC+GGG 0.450845 5_4:+17744235 None:intergenic
GTCGGCGTTGCATTGTTCCT+TGG 0.453402 5_4:-17744607 Msa0841430:CDS
TCTCCTTGCTTCCATTCCAC+AGG 0.455637 5_4:-17744734 Msa0841430:CDS
AATCATTGAACAAAAGAAGT+TGG 0.455882 5_4:-17750465 Msa0841430:CDS
CAGCATAAATTCGAAATAAG+TGG 0.456937 5_4:+17745655 None:intergenic
GCGCCAACGGTTGCTGCTGT+AGG 0.457783 5_4:-17745971 Msa0841430:CDS
CCTCTTCCTCTATGATGAAA+AGG 0.458047 5_4:+17749093 None:intergenic
GGCCTATCGACTTTACAGTA+TGG 0.462728 5_4:-17744661 Msa0841430:intron
CTTACAGCACTATATATCAT+TGG 0.465141 5_4:-17747136 Msa0841430:CDS
ATTGAATCTTTCTCTATCTC+CGG 0.465172 5_4:+17750283 None:intergenic
CTCACAACTCCTGGAGTTGG+AGG 0.475666 5_4:+17745094 None:intergenic
CCAAGCAAATACCAGCTTGT+GGG 0.476150 5_4:+17745924 None:intergenic
GGTGATGGTGAGAGGAAAGT+TGG 0.476679 5_4:-17748940 Msa0841430:CDS
ATTAGTCATGGTACCAGTCA+TGG 0.477474 5_4:-17747091 Msa0841430:CDS
CTTGAGCCAAGGGCAACAAC+GGG 0.480289 5_4:+17750210 None:intergenic
CTTCGAGGAATATCTATCTC+TGG 0.481735 5_4:-17745681 Msa0841430:CDS
TCATCCTTCTCCTCAGTCAC+AGG 0.482513 5_4:+17748850 None:intergenic
TTCAGGAACATGACAATTGT+CGG 0.483776 5_4:-17744625 Msa0841430:CDS
AAGAGGGTCTTCATCTTCTC+CGG 0.485493 5_4:-17750302 Msa0841430:CDS
ACATGGTGATGGTGAAGTTA+AGG 0.487479 5_4:-17748815 Msa0841430:CDS
CCTTATGCGGCAGCGTCAAG+TGG 0.488646 5_4:-17744514 Msa0841430:CDS
AGTAGGAGAGTAGTGGAACT+TGG 0.490518 5_4:-17744956 Msa0841430:CDS
GGTTTCTGTAGTATATTGGC+TGG 0.490990 5_4:-17745052 Msa0841430:CDS
AGAAATTTAGACACATAATG+AGG 0.491899 5_4:-17746608 Msa0841430:CDS
AGAGGAAAGTTGGTTTAAGA+GGG 0.491986 5_4:-17748930 Msa0841430:CDS
CGGCTCACAACTCCTGGAGT+TGG 0.492387 5_4:+17745091 None:intergenic
ACCCAAGAGAATTACGTTCA+TGG 0.493944 5_4:-17749185 Msa0841430:CDS
AATGTTTGAACTCGGTACAT+TGG 0.497178 5_4:+17745446 None:intergenic
TGTTTGTTGAAGCATCTTCG+AGG 0.502276 5_4:-17745696 Msa0841430:intron
AATCATGGTCATAGTGTCAC+TGG 0.503235 5_4:-17745280 Msa0841430:CDS
CGCTCTTATGTCCATGAACA+TGG 0.503641 5_4:-17744298 Msa0841430:CDS
ATTGGTTCTATTATTCACTC+TGG 0.507159 5_4:-17745879 Msa0841430:intron
ATTTGGAGATGGTGGATGGA+AGG 0.508885 5_4:-17748767 Msa0841430:CDS
TTGAATTTGGAGATGGTGGA+TGG 0.508948 5_4:-17748771 Msa0841430:CDS
CTCGTTTGTGTATTTAGCGC+CGG 0.510177 5_4:-17746865 Msa0841430:CDS
TGCTATACTGTGTTTCATGT+GGG 0.512633 5_4:-17744701 Msa0841430:CDS
CCAGCTTGTGATTGTGAAGC+TGG 0.515519 5_4:+17749015 None:intergenic
GCATTTATAATGACTAATGC+CGG 0.518004 5_4:+17746846 None:intergenic
AATTCAAGGCCTCCAACTCC+AGG 0.519913 5_4:-17745103 Msa0841430:CDS
AAAGTTGGTTTAAGAGGGAA+TGG 0.522061 5_4:-17748925 Msa0841430:CDS
CTTGTGATTGTGAAGCTGGT+TGG 0.522340 5_4:+17749019 None:intergenic
ATGCATTGTCTACTGCTGCA+TGG 0.523315 5_4:-17745362 Msa0841430:CDS
CTCCCAAACACTTGAGCCAA+GGG 0.523799 5_4:+17750200 None:intergenic
GGTGTTAATGTGAATGGTAA+TGG 0.523853 5_4:-17748904 Msa0841430:CDS
CAGCACTATATATCATTGGC+TGG 0.524188 5_4:-17747132 Msa0841430:CDS
TGGATCTCAACACCCCTAGT+TGG 0.524426 5_4:+17749039 None:intergenic
ACATCTGTTCCACCCATGAC+TGG 0.524518 5_4:+17747078 None:intergenic
CTGCTATACTGTGTTTCATG+TGG 0.524664 5_4:-17744702 Msa0841430:CDS
TGCATTGTCTACTGCTGCAT+GGG 0.526144 5_4:-17745361 Msa0841430:intron
CTTCAGGACTTCCATAATCA+TGG 0.529196 5_4:-17745295 Msa0841430:CDS
CTACTGGACAACACTGTCCC+GGG 0.530706 5_4:-17744252 Msa0841430:CDS
GGAGTTGAATTTGGAGATGG+TGG 0.531975 5_4:-17748775 Msa0841430:CDS
AGATAGAGATAGATCCAACT+AGG 0.536250 5_4:-17749053 Msa0841430:CDS
AGTATATTGGCTGGTCTTTG+GGG 0.537211 5_4:-17745043 Msa0841430:CDS
TTGTTGAAAATAGGATGGAA+TGG 0.537365 5_4:+17744579 None:intergenic
TCTACTGGACAACACTGTCC+CGG 0.540937 5_4:-17744253 Msa0841430:CDS
TGTGACTGAGGAGAAGGATG+AGG 0.542229 5_4:-17748848 Msa0841430:CDS
AACCCTCCAATGCAATTCCT+CGG 0.543888 5_4:+17745071 None:intergenic
TCAGGTGAAGCAGGGACTAG+TGG 0.544152 5_4:-17749132 Msa0841430:intron
AGCCGAGGAATTGCATTGGA+GGG 0.544530 5_4:-17745073 Msa0841430:CDS
CAAGTTATTGTTGCGCTCAA+CGG 0.544576 5_4:+17745525 None:intergenic
CCATGCAAGTTTCTTTGGCA+GGG 0.544812 5_4:+17744149 None:intergenic
TTTCATGTGGGCTCTTACCG+TGG 0.545169 5_4:-17744689 Msa0841430:CDS
CACATAATGAGGGAACTTCA+AGG 0.546339 5_4:-17746597 Msa0841430:CDS
CCCAAGAGAATTACGTTCAT+GGG 0.549316 5_4:-17749184 Msa0841430:CDS
ACCCGACTTCCTTTAGTGCA+AGG 0.549323 5_4:-17746891 Msa0841430:CDS
CTGATTATTCAGGTGAAGCA+GGG 0.551463 5_4:-17749140 Msa0841430:intron
TCCCTTGCACTAAAGGAAGT+CGG 0.553144 5_4:+17746889 None:intergenic
AAGGTTAATGTGTTTCCAGA+AGG 0.553353 5_4:-17748796 Msa0841430:CDS
CCCGACTTCCTTTAGTGCAA+GGG 0.555144 5_4:-17746890 Msa0841430:CDS
GTGCAGTATAGTTGTGATGC+CGG 0.555342 5_4:+17746926 None:intergenic
ACTTGAGCCAAGGGCAACAA+CGG 0.557301 5_4:+17750209 None:intergenic
TGTTTAAGGCCTGAATGGAA+TGG 0.558091 5_4:+17744490 None:intergenic
CACTAAATCCCAAGATACAT+TGG 0.559536 5_4:+17746550 None:intergenic
AGTCCACACTTCAAATCAGA+TGG 0.560565 5_4:+17748742 None:intergenic
TTTGGAGATGGTGGATGGAA+GGG 0.560727 5_4:-17748766 Msa0841430:CDS
GGGAATGGTGTTAATGTGAA+TGG 0.562700 5_4:-17748910 Msa0841430:CDS
GATAGAGAAAGATTCAATTG+TGG 0.562887 5_4:-17750278 Msa0841430:CDS
AACTTGCATGGTGTTGCTGT+TGG 0.563081 5_4:-17744137 Msa0841430:CDS
CTCTCACCATCACCATTCAA+AGG 0.564623 5_4:+17748949 None:intergenic
TCCAAGCAAATACCAGCTTG+TGG 0.564734 5_4:+17745923 None:intergenic
TGTATTAATCCCATTAGTCA+TGG 0.565064 5_4:-17747103 Msa0841430:CDS
GAGCCGAGGAATTGCATTGG+AGG 0.566036 5_4:-17745074 Msa0841430:CDS
TGCAGTTGCTCCTGTGACTG+AGG 0.566128 5_4:-17748860 Msa0841430:intron
TGTGGACTTAAAGAAAATCC+GGG 0.567139 5_4:-17748727 Msa0841430:CDS
GATAGAGATAGATCCAACTA+GGG 0.567963 5_4:-17749052 Msa0841430:CDS
AGCAGCCAAGGCCTGTGGAA+TGG 0.570357 5_4:+17744723 None:intergenic
AGTTACGGTTTCCCACAAGC+TGG 0.571863 5_4:-17745935 Msa0841430:CDS
TGCTCCTGTGACTGAGGAGA+AGG 0.572209 5_4:-17748854 Msa0841430:CDS
TGTGAGCCGAGGAATTGCAT+TGG 0.574624 5_4:-17745077 Msa0841430:CDS
CAGTTATCTTGTTCCTTATG+CGG 0.574780 5_4:-17744527 Msa0841430:CDS
TTAGTCATGGTACCAGTCAT+GGG 0.575195 5_4:-17747090 Msa0841430:CDS
ACACAGTATAGCAGCAGCCA+AGG 0.577141 5_4:+17744711 None:intergenic
AGGATGGAATGGACATTCCA+AGG 0.577433 5_4:+17744590 None:intergenic
GCTTGATGTCTATCCTACTC+AGG 0.579268 5_4:-17746527 Msa0841430:intron
GGTGGCAAGTAGGAGAGTAG+TGG 0.580576 5_4:-17744963 Msa0841430:CDS
GAAGGAGTTGAATTTGGAGA+TGG 0.582600 5_4:-17748778 Msa0841430:CDS
CTTATGCGGCAGCGTCAAGT+GGG 0.584023 5_4:-17744513 Msa0841430:CDS
AGATTGCAGCGAGGCATCCG+CGG 0.585119 5_4:+17744179 None:intergenic
TGGTATTGTTGAAAATAGGA+TGG 0.586767 5_4:+17744574 None:intergenic
TCAGTGTTTGGAACAATGAG+AGG 0.587826 5_4:+17750439 None:intergenic
ACATCACAAAGGTGGCAAGT+AGG 0.589236 5_4:-17744973 Msa0841430:CDS
ACTCCCAAACACTTGAGCCA+AGG 0.591845 5_4:+17750199 None:intergenic
CTTTACCTACAAATGAGAAG+AGG 0.593632 5_4:+17744918 None:intergenic
GTATAAGACTTGACTCAGGC+TGG 0.598503 5_4:+17744554 None:intergenic
AAACCTACAGCAGCAACCGT+TGG 0.601364 5_4:+17745968 None:intergenic
GTTCATGGGCTAAGAAAACT+GGG 0.602879 5_4:-17749170 Msa0841430:intron
TAGGTTAATCAACCCTGTTG+TGG 0.603357 5_4:-17745996 Msa0841430:CDS
TGATTATGGAAGTCCTGAAG+TGG 0.603711 5_4:+17745298 None:intergenic
GAAATTTAGACACATAATGA+GGG 0.604178 5_4:-17746607 Msa0841430:CDS
GGACCATCTGATTTGAAGTG+TGG 0.604307 5_4:-17748745 Msa0841430:CDS
CACAATTAACATCACAAAGG+TGG 0.604324 5_4:-17744981 Msa0841430:CDS
AGGCCTGTGGAATGGAAGCA+AGG 0.607804 5_4:+17744731 None:intergenic
CTTTGAATGGTGATGGTGAG+AGG 0.613652 5_4:-17748948 Msa0841430:CDS
AAGAACGAGGAGTGTATACA+TGG 0.615795 5_4:-17744221 Msa0841430:CDS
AGTCGATAGGCCCAATGCCA+CGG 0.617446 5_4:+17744672 None:intergenic
CCCTGCCAAAGAAACTTGCA+TGG 0.625130 5_4:-17744149 Msa0841430:CDS
CATGGTGGTTACACTGTTGG+TGG 0.626703 5_4:-17744280 Msa0841430:CDS
GAACATGGTGGTTACACTGT+TGG 0.627072 5_4:-17744283 Msa0841430:CDS
CCAGCTTCACAATCACAAGC+TGG 0.627986 5_4:-17749015 Msa0841430:CDS
TGCAGCAGTAGACAATGCAT+CGG 0.629989 5_4:+17745365 None:intergenic
TAGAGAAAGATTCAATTGTG+GGG 0.633567 5_4:-17750276 Msa0841430:CDS
GAGAATGTGGTACATGGTGA+TGG 0.633962 5_4:-17748826 Msa0841430:CDS
GTTAATGTGAATGGTAATGG+TGG 0.636549 5_4:-17748901 Msa0841430:intron
GACCATACTGTAAAGTCGAT+AGG 0.637354 5_4:+17744659 None:intergenic
GGAGAAGGATGAGGAGAATG+TGG 0.638004 5_4:-17748839 Msa0841430:CDS
GCATAAGGAACAAGATAACT+GGG 0.640702 5_4:+17744529 None:intergenic
ATAGCAGCAGCCAAGGCCTG+TGG 0.643514 5_4:+17744718 None:intergenic
AAAACAAACTAACCTAAACC+CGG 0.645422 5_4:+17748709 None:intergenic
GATGAGGAGAATGTGGTACA+TGG 0.652447 5_4:-17748832 Msa0841430:CDS
GGCAGTATAAGACTTGACTC+AGG 0.653391 5_4:+17744550 None:intergenic
TCAGTAAGAATGTTTGAACT+CGG 0.663142 5_4:+17745438 None:intergenic
GTCATGGTACCAGTCATGGG+TGG 0.663447 5_4:-17747087 Msa0841430:CDS
ATATACCATGAAGCATTGCA+GGG 0.667424 5_4:-17745397 Msa0841430:CDS
ACTCCAGGAGTTGTGAGCCG+AGG 0.668659 5_4:-17745088 Msa0841430:CDS
TTGATTACTCAGGAGAAGCA+GGG 0.674048 5_4:-17750366 Msa0841430:CDS
CCGTTGGCGCAACCACAACA+GGG 0.681677 5_4:+17745984 None:intergenic
CCGGGAAGTAAACAAGAACG+AGG 0.685706 5_4:-17744234 Msa0841430:CDS
GGGGAGAATAGAACATGACA+AGG 0.693723 5_4:-17750257 Msa0841430:CDS
GAGAGCTGAAGACATTGCCG+CGG 0.710630 5_4:-17744196 Msa0841430:CDS
GCACACAATTAACATCACAA+AGG 0.716995 5_4:-17744984 Msa0841430:CDS
ATAGAGATAGATCCAACTAG+GGG 0.726766 5_4:-17749051 Msa0841430:CDS
GGAATATTCAGATTGCAGCG+AGG 0.745841 5_4:+17744170 None:intergenic
TCTTATGTCCATGAACATGG+TGG 0.757467 5_4:-17744295 Msa0841430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTTATTAAAAAAAATT+AGG + chr5_4:17744755-17744774 None:intergenic 0.0%
!! TTAATAAAAATAATAATAAT+AGG + chr5_4:17748132-17748151 None:intergenic 0.0%
!!! GTTTATCTAAAAAATTTTTT+TGG - chr5_4:17744525-17744544 Msa0841430:CDS 10.0%
!! AACATAAAAAATAGTTATAT+CGG - chr5_4:17746479-17746498 Msa0841430:intron 10.0%
!!! AAAATGAATTATTACTTTTT+GGG + chr5_4:17747186-17747205 None:intergenic 10.0%
!!! AAAAATGAATTATTACTTTT+TGG + chr5_4:17747187-17747206 None:intergenic 10.0%
!! AAAATAATAATAATAGGAAA+AGG + chr5_4:17748126-17748145 None:intergenic 10.0%
!! TATAATACAAAAACATAACA+TGG + chr5_4:17744310-17744329 None:intergenic 15.0%
!! AAAAAATACATACCAAATAA+AGG - chr5_4:17744607-17744626 Msa0841430:CDS 15.0%
!!! ATTTTGAATTATGTTTCATA+TGG - chr5_4:17745726-17745745 Msa0841430:intron 15.0%
!!! CAATATGTTATATTTTAGTT+TGG - chr5_4:17745770-17745789 Msa0841430:intron 15.0%
!!! TTTTATGAACATTTGAATTT+TGG - chr5_4:17745864-17745883 Msa0841430:intron 15.0%
!! ACATAAAAAATAGTTATATC+GGG - chr5_4:17746480-17746499 Msa0841430:intron 15.0%
!!! TTTGTTTTAATCTAAAAAAC+AGG - chr5_4:17746807-17746826 Msa0841430:intron 15.0%
!!! TATTTTTTAAAAGAAAATGC+TGG + chr5_4:17747038-17747057 None:intergenic 15.0%
!! TTACAAATCACATTAAAATT+TGG - chr5_4:17747701-17747720 Msa0841430:intron 15.0%
!! AATTACATTTAAATATTTGC+AGG - chr5_4:17748840-17748859 Msa0841430:CDS 15.0%
!!! ATCATATTTACATTTTTAGA+TGG - chr5_4:17749156-17749175 Msa0841430:intron 15.0%
!! ATAATATAATTCTGCAATTA+TGG + chr5_4:17749521-17749540 None:intergenic 15.0%
!! ATCCAAAAAACTTAAATTCA+TGG - chr5_4:17743979-17743998 Msa0841430:three_prime_UTR 20.0%
!! TCCAAAAAACTTAAATTCAT+GGG - chr5_4:17743980-17743999 Msa0841430:three_prime_UTR 20.0%
!! TTAGAAATTAGATTTATGGT+TGG - chr5_4:17744248-17744267 Msa0841430:CDS 20.0%
!! TAGAAATTAGATTTATGGTT+GGG - chr5_4:17744249-17744268 Msa0841430:CDS 20.0%
!!! TAGAAAAAAAAAAGTCTTGT+TGG + chr5_4:17744485-17744504 None:intergenic 20.0%
!!! TTTTTCTGTATAATATGCAT+AGG + chr5_4:17744592-17744611 None:intergenic 20.0%
!!! ACATCTTTTTCTTTCTAATA+TGG + chr5_4:17744657-17744676 None:intergenic 20.0%
!!! AAAAAGAGAAATGATGTTTT+GGG + chr5_4:17744876-17744895 None:intergenic 20.0%
!!! ATCTTGTTATAGAATAGATT+AGG - chr5_4:17745960-17745979 Msa0841430:CDS 20.0%
!! AAATGAGAAGATAATCAAAT+AGG - chr5_4:17747057-17747076 Msa0841430:intron 20.0%
!! ATGATATGTATATAGAAACT+GGG + chr5_4:17747096-17747115 None:intergenic 20.0%
!! AATGATATGTATATAGAAAC+TGG + chr5_4:17747097-17747116 None:intergenic 20.0%
!! AATTAACATGATTATGTTCT+TGG - chr5_4:17747153-17747172 Msa0841430:CDS 20.0%
!! AAACAACATTGTAGAAATTA+CGG + chr5_4:17747440-17747459 None:intergenic 20.0%
!! TTATAAATGCTCAAGAATAT+CGG - chr5_4:17747557-17747576 Msa0841430:intron 20.0%
!!! ATTTTAATGTGATTTGTAAC+AGG + chr5_4:17747700-17747719 None:intergenic 20.0%
!! AAATATGCAGGATTTAATAA+GGG + chr5_4:17747761-17747780 None:intergenic 20.0%
!! GGATATAAATAATTAATCCT+AGG + chr5_4:17748105-17748124 None:intergenic 20.0%
!!! TATTGATAATAAGATGATAC+TGG + chr5_4:17748232-17748251 None:intergenic 20.0%
!!! ATTGAACTTTTATCAATAAG+AGG - chr5_4:17748327-17748346 Msa0841430:intron 20.0%
!!! TCATAAGTGTTTGTTATTTT+AGG + chr5_4:17748821-17748840 None:intergenic 20.0%
!! AAATATTTGAACTTCAATTC+AGG + chr5_4:17749568-17749587 None:intergenic 20.0%
!! GTTCAAATATTTCTTTATAC+AGG - chr5_4:17749576-17749595 Msa0841430:intron 20.0%
!!! TTTTATTTTTGTAGGAAAAG+TGG - chr5_4:17749629-17749648 Msa0841430:intron 20.0%
!!! TTTATTTTTGTAGGAAAAGT+GGG - chr5_4:17749630-17749649 Msa0841430:intron 20.0%
!!! TTTTAAGTAATACTACAATG+AGG + chr5_4:17749963-17749982 None:intergenic 20.0%
!!! TACTTAAAAACTTGTTTAGA+CGG - chr5_4:17749974-17749993 Msa0841430:intron 20.0%
!! TATTACTAGCAACATTAAAT+TGG - chr5_4:17750366-17750385 Msa0841430:CDS 20.0%
! AATCATTGAACAAAAGAAGT+TGG - chr5_4:17743925-17743944 Msa0841430:three_prime_UTR 25.0%
! TGAGTAATCAAGTACAAAAT+CGG + chr5_4:17744015-17744034 None:intergenic 25.0%
! ATAGAGAAAGATTCAATTGT+GGG - chr5_4:17744113-17744132 Msa0841430:exon 25.0%
! TCGGTTAGAAATTAGATTTA+TGG - chr5_4:17744244-17744263 Msa0841430:CDS 25.0%
! ATTTGGAAGTAACCTTTATT+TGG + chr5_4:17744622-17744641 None:intergenic 25.0%
!!! GTGTAAGTTCTAGAAAATAA+GGG + chr5_4:17744693-17744712 None:intergenic 25.0%
!! AAAAGAGAAATGATGTTTTG+GGG + chr5_4:17744875-17744894 None:intergenic 25.0%
!! CAAAAAGAGAAATGATGTTT+TGG + chr5_4:17744877-17744896 None:intergenic 25.0%
!!! CATTTCTCTTTTTGAAGTAA+AGG - chr5_4:17744883-17744902 Msa0841430:intron 25.0%
!!! GAAATTTGAGAGCTTTTTTT+AGG + chr5_4:17745010-17745029 None:intergenic 25.0%
! ATGAAATCAATACAATGTTG+TGG + chr5_4:17745100-17745119 None:intergenic 25.0%
!! TCTTCAAGAAAAAGTGTAAA+TGG - chr5_4:17745131-17745150 Msa0841430:CDS 25.0%
!!! TGGTTTAACTTGAATTTATG+CGG - chr5_4:17745829-17745848 Msa0841430:intron 25.0%
! TGTTATAGAATAGATTAGGA+AGG - chr5_4:17745964-17745983 Msa0841430:CDS 25.0%
! AGAACATATGAATATGAATG+AGG - chr5_4:17746100-17746119 Msa0841430:intron 25.0%
! GAACATATGAATATGAATGA+GGG - chr5_4:17746101-17746120 Msa0841430:intron 25.0%
!! TATAAGATGTCTAGAATTCA+AGG - chr5_4:17746134-17746153 Msa0841430:intron 25.0%
! AGCAAAAATTCTACTTAAAG+GGG + chr5_4:17746207-17746226 None:intergenic 25.0%
! GAGCAAAAATTCTACTTAAA+GGG + chr5_4:17746208-17746227 None:intergenic 25.0%
! TGAGCAAAAATTCTACTTAA+AGG + chr5_4:17746209-17746228 None:intergenic 25.0%
!!! TTTATTTCTAGATAAAGGCT+TGG + chr5_4:17746319-17746338 None:intergenic 25.0%
!!! GAGGATTTATTTCTAGATAA+AGG + chr5_4:17746324-17746343 None:intergenic 25.0%
! CTGATAAAAGCAACTTAATA+AGG - chr5_4:17746960-17746979 Msa0841430:CDS 25.0%
!!! TTTTAAAAGAAAATGCTGGT+TGG + chr5_4:17747034-17747053 None:intergenic 25.0%
!! TTTCTGTTTGTTAATGTAGT+AGG + chr5_4:17747605-17747624 None:intergenic 25.0%
! GAAATATGCAGGATTTAATA+AGG + chr5_4:17747762-17747781 None:intergenic 25.0%
!!! TCTAAATTTCTGAAATATGC+AGG + chr5_4:17747773-17747792 None:intergenic 25.0%
! AGAAATTTAGACACATAATG+AGG - chr5_4:17747782-17747801 Msa0841430:intron 25.0%
! GAAATTTAGACACATAATGA+GGG - chr5_4:17747783-17747802 Msa0841430:intron 25.0%
! TTCAATATTCCAATGTATCT+TGG - chr5_4:17747831-17747850 Msa0841430:intron 25.0%
! TCAATATTCCAATGTATCTT+GGG - chr5_4:17747832-17747851 Msa0841430:intron 25.0%
!! AACACGAGAAAAAAATGTTT+TGG + chr5_4:17747926-17747945 None:intergenic 25.0%
!!! ATTTTTTTCTCGTGTTGAAT+TGG - chr5_4:17747930-17747949 Msa0841430:intron 25.0%
!!! GATATTACTCTAGAATATCT+TGG - chr5_4:17748035-17748054 Msa0841430:intron 25.0%
! TTATCTTAAGATCATTTCCT+AGG - chr5_4:17748085-17748104 Msa0841430:intron 25.0%
!!! AAGGAAACCATTTTTTTCTT+CGG + chr5_4:17748168-17748187 None:intergenic 25.0%
! AGACTAGTATTAGGTAAATA+AGG + chr5_4:17748187-17748206 None:intergenic 25.0%
! TGATACAAAAGACTAGTATT+AGG + chr5_4:17748196-17748215 None:intergenic 25.0%
! AACTATTTACAATTTGTCGT+AGG - chr5_4:17748375-17748394 Msa0841430:intron 25.0%
!! TTATCTGAATAGTTTTCTCA+TGG - chr5_4:17748567-17748586 Msa0841430:intron 25.0%
! CTTGATTTATAAACATGTCA+CGG - chr5_4:17748611-17748630 Msa0841430:intron 25.0%
! AACAAGACAAAAAGAAGAAA+TGG + chr5_4:17748678-17748697 None:intergenic 25.0%
! AGCGTATAATTAAATACAGT+TGG - chr5_4:17750001-17750020 Msa0841430:intron 25.0%
!!! GCCCATGAATTTAAGTTTTT+TGG + chr5_4:17743984-17744003 None:intergenic 30.0%
! GATTTTGTACTTGATTACTC+AGG - chr5_4:17744014-17744033 Msa0841430:three_prime_UTR 30.0%
!!! TTTGAACTTTTTCAATCGAG+AGG - chr5_4:17744065-17744084 Msa0841430:three_prime_UTR 30.0%
ATTGAATCTTTCTCTATCTC+CGG + chr5_4:17744110-17744129 None:intergenic 30.0%
GATAGAGAAAGATTCAATTG+TGG - chr5_4:17744112-17744131 Msa0841430:exon 30.0%
TAGAGAAAGATTCAATTGTG+GGG - chr5_4:17744114-17744133 Msa0841430:exon 30.0%
TCTTCATTTACGATGATGAT+CGG - chr5_4:17744225-17744244 Msa0841430:CDS 30.0%
ACTAAGCACATTAACAAACA+TGG + chr5_4:17744275-17744294 None:intergenic 30.0%
! TCTGCACTGAAATATTTTGT+TGG + chr5_4:17744569-17744588 None:intergenic 30.0%
! TATGGATTGCGTTAAGTATT+TGG + chr5_4:17744639-17744658 None:intergenic 30.0%
GAAAAAGATGTAAGAAAGAG+AGG - chr5_4:17744666-17744685 Msa0841430:CDS 30.0%
!! CGTGTAAGTTCTAGAAAATA+AGG + chr5_4:17744694-17744713 None:intergenic 30.0%
TAGTTGAAATGTGACATTCA+AGG + chr5_4:17744922-17744941 None:intergenic 30.0%
GAATGTCACATTTCAACTAA+CGG - chr5_4:17744923-17744942 Msa0841430:intron 30.0%
GTTGTGGAATGAATAAAGAT+TGG + chr5_4:17745084-17745103 None:intergenic 30.0%
!!! TAACCAGTTTTTGGAACAAA+AGG + chr5_4:17745183-17745202 None:intergenic 30.0%
! TTTGAACCTTTTCATCATAG+AGG - chr5_4:17745291-17745310 Msa0841430:CDS 30.0%
AAAACAAACTAACCTAAACC+CGG + chr5_4:17745684-17745703 None:intergenic 30.0%
!!! TGTTTTCGTTGTTTTTCTGT+TGG - chr5_4:17745698-17745717 Msa0841430:intron 30.0%
!! TTAGTTTGGAATGCTAGTTT+TGG - chr5_4:17745784-17745803 Msa0841430:intron 30.0%
GGTTTGAATTGAAAGTAGTT+TGG - chr5_4:17745809-17745828 Msa0841430:intron 30.0%
TAAGCAATGTGAATTGAATG+TGG - chr5_4:17745907-17745926 Msa0841430:CDS 30.0%
AGGATGACATGTATATTGTT+TGG - chr5_4:17745984-17746003 Msa0841430:CDS 30.0%
CATGTATATTGTTTGGATTC+TGG - chr5_4:17745991-17746010 Msa0841430:CDS 30.0%
CTAGAACTCAAATCAAGTAA+TGG + chr5_4:17746025-17746044 None:intergenic 30.0%
TGCAAAGAATTCATAAGCAA+TGG + chr5_4:17746074-17746093 None:intergenic 30.0%
TTGTATTTGCATTGTGGATT+CGG - chr5_4:17746455-17746474 Msa0841430:intron 30.0%
CTATATAGACAGGATTCAAA+GGG + chr5_4:17746611-17746630 None:intergenic 30.0%
CTTTGAATCCTGTCTATATA+GGG - chr5_4:17746610-17746629 Msa0841430:intron 30.0%
AAGTAATAGTATTCTCGACT+AGG + chr5_4:17746675-17746694 None:intergenic 30.0%
! ATTATGAAAGTACAGAAGTG+AGG - chr5_4:17746724-17746743 Msa0841430:intron 30.0%
! TTATGAAAGTACAGAAGTGA+GGG - chr5_4:17746725-17746744 Msa0841430:intron 30.0%
ATGATAATTGATCAGAGACA+TGG + chr5_4:17746752-17746771 None:intergenic 30.0%
!! CAACTTGAAAACAGTTTTAG+AGG + chr5_4:17746783-17746802 None:intergenic 30.0%
!!! AAGTTGCTTTTATCAGTGAA+TGG + chr5_4:17746956-17746975 None:intergenic 30.0%
ATAGAAACTGGGAAAAATCA+GGG + chr5_4:17747085-17747104 None:intergenic 30.0%
TATAGAAACTGGGAAAAATC+AGG + chr5_4:17747086-17747105 None:intergenic 30.0%
GCAGTATCTCTTATCTATTA+TGG - chr5_4:17747231-17747250 Msa0841430:intron 30.0%
CTTACAGCACTATATATCAT+TGG - chr5_4:17747254-17747273 Msa0841430:intron 30.0%
TGTATTAATCCCATTAGTCA+TGG - chr5_4:17747287-17747306 Msa0841430:intron 30.0%
ATCGACTAGAGAGTAATAAA+TGG + chr5_4:17747357-17747376 None:intergenic 30.0%
TACATTATTCTGATGACAGA+AGG - chr5_4:17747405-17747424 Msa0841430:intron 30.0%
!! TCTACAATGTTGTTTCTTTC+CGG - chr5_4:17747445-17747464 Msa0841430:intron 30.0%
GCATTTATAATGACTAATGC+CGG + chr5_4:17747547-17747566 None:intergenic 30.0%
CTTAATTCATCAAACACTCA+AGG - chr5_4:17747627-17747646 Msa0841430:intron 30.0%
GAGAATATATTCAAACGAAC+AGG + chr5_4:17747734-17747753 None:intergenic 30.0%
! AAACTTTTTGTTACCTGAGT+AGG + chr5_4:17747879-17747898 None:intergenic 30.0%
!!! AAAATGTTTTGGTGAACACA+AGG + chr5_4:17747915-17747934 None:intergenic 30.0%
TATCATGTGTCTCTTTATCT+CGG + chr5_4:17747979-17747998 None:intergenic 30.0%
!! GATATTCTAGAGTAATATCG+AGG + chr5_4:17748034-17748053 None:intergenic 30.0%
!!! AACCATTTTTTTCTTCGGAA+GGG + chr5_4:17748163-17748182 None:intergenic 30.0%
!!! AAACCATTTTTTTCTTCGGA+AGG + chr5_4:17748164-17748183 None:intergenic 30.0%
AATAGAACCAATGCAATTTG+TGG + chr5_4:17748503-17748522 None:intergenic 30.0%
!! ATTGGTTCTATTATTCACTC+TGG - chr5_4:17748511-17748530 Msa0841430:intron 30.0%
CAGCATAAATTCGAAATAAG+TGG + chr5_4:17748738-17748757 None:intergenic 30.0%
TCAGTAAGAATGTTTGAACT+CGG + chr5_4:17748955-17748974 None:intergenic 30.0%
AATTCCTTATCCTTTACAGT+GGG - chr5_4:17749056-17749075 Msa0841430:CDS 30.0%
TTGTTGAAAATAGGATGGAA+TGG + chr5_4:17749814-17749833 None:intergenic 30.0%
TGGTATTGTTGAAAATAGGA+TGG + chr5_4:17749819-17749838 None:intergenic 30.0%
! AAAATCAAGCTGACAAGTTT+TGG + chr5_4:17750064-17750083 None:intergenic 30.0%
CACTTCTGACATTAACAAAA+AGG - chr5_4:17750297-17750316 Msa0841430:CDS 30.0%
ATTGCAGATCATGAAGAAAA+AGG - chr5_4:17750321-17750340 Msa0841430:intron 30.0%
TTTGGATTGTGATCAGTGTT+TGG + chr5_4:17743966-17743985 None:intergenic 35.0%
!! TTTTTCAATCGAGAGGAAGA+GGG - chr5_4:17744072-17744091 Msa0841430:three_prime_UTR 35.0%
TTGTAACCTGCAATCAGATT+TGG - chr5_4:17744447-17744466 Msa0841430:intron 35.0%
TTACTACCAAATCTGATTGC+AGG + chr5_4:17744456-17744475 None:intergenic 35.0%
ATGAGAGAAAATGCATACAG+TGG + chr5_4:17745032-17745051 None:intergenic 35.0%
!! GGGTTTGTTTCTGATTATTC+AGG - chr5_4:17745240-17745259 Msa0841430:intron 35.0%
! CTTTTCATCATAGAGGAAGA+GGG - chr5_4:17745298-17745317 Msa0841430:CDS 35.0%
GTTGGATCTATCTCTATCTT+AGG + chr5_4:17745336-17745355 None:intergenic 35.0%
AGATAGAGATAGATCCAACT+AGG - chr5_4:17745337-17745356 Msa0841430:intron 35.0%
GATAGAGATAGATCCAACTA+GGG - chr5_4:17745338-17745357 Msa0841430:intron 35.0%
ATAGAGATAGATCCAACTAG+GGG - chr5_4:17745339-17745358 Msa0841430:intron 35.0%
! AGAGGAAAGTTGGTTTAAGA+GGG - chr5_4:17745460-17745479 Msa0841430:CDS 35.0%
! AAAGTTGGTTTAAGAGGGAA+TGG - chr5_4:17745465-17745484 Msa0841430:CDS 35.0%
GGTGTTAATGTGAATGGTAA+TGG - chr5_4:17745486-17745505 Msa0841430:CDS 35.0%
!! GTTAATGTGAATGGTAATGG+TGG - chr5_4:17745489-17745508 Msa0841430:CDS 35.0%
AAGGTTAATGTGTTTCCAGA+AGG - chr5_4:17745594-17745613 Msa0841430:intron 35.0%
TTTCCAGAAGGAGTTGAATT+TGG - chr5_4:17745606-17745625 Msa0841430:intron 35.0%
GTGTGGACTTAAAGAAAATC+CGG - chr5_4:17745662-17745681 Msa0841430:CDS 35.0%
TGTGGACTTAAAGAAAATCC+GGG - chr5_4:17745663-17745682 Msa0841430:CDS 35.0%
CTTAAAGAAAATCCGGGTTT+AGG - chr5_4:17745669-17745688 Msa0841430:CDS 35.0%
!!! TTTGGAATGCTAGTTTTGGT+TGG - chr5_4:17745788-17745807 Msa0841430:intron 35.0%
TGTGGTTAACTCTGTATGTT+TGG - chr5_4:17745925-17745944 Msa0841430:CDS 35.0%
TGGAATGAGCTTATCATGTA+GGG + chr5_4:17746178-17746197 None:intergenic 35.0%
ATGGAATGAGCTTATCATGT+AGG + chr5_4:17746179-17746198 None:intergenic 35.0%
TCTACTTAAAGGGGAAAGAA+TGG + chr5_4:17746198-17746217 None:intergenic 35.0%
! ATTTCTAGATAAAGGCTTGG+AGG + chr5_4:17746316-17746335 None:intergenic 35.0%
AAATACAATTGAGGCTGCAT+CGG + chr5_4:17746443-17746462 None:intergenic 35.0%
CCACAATGCAAATACAATTG+AGG + chr5_4:17746452-17746471 None:intergenic 35.0%
CCTCAATTGTATTTGCATTG+TGG - chr5_4:17746449-17746468 Msa0841430:intron 35.0%
! CCATTATTTGAAACCCTACA+CGG - chr5_4:17746523-17746542 Msa0841430:intron 35.0%
! CATTATTTGAAACCCTACAC+GGG - chr5_4:17746524-17746543 Msa0841430:intron 35.0%
CCTATATAGACAGGATTCAA+AGG + chr5_4:17746612-17746631 None:intergenic 35.0%
CCTTTGAATCCTGTCTATAT+AGG - chr5_4:17746609-17746628 Msa0841430:CDS 35.0%
ACTTCTTTCCCTATATAGAC+AGG + chr5_4:17746621-17746640 None:intergenic 35.0%
AAGTTATCTAAGTCGTGTTG+AGG + chr5_4:17746704-17746723 None:intergenic 35.0%
!!! CTTGAAAACAGTTTTAGAGG+TGG + chr5_4:17746780-17746799 None:intergenic 35.0%
TAGAAACTGGGAAAAATCAG+GGG + chr5_4:17747084-17747103 None:intergenic 35.0%
ACTATACTGCACTCTTACTT+TGG - chr5_4:17747475-17747494 Msa0841430:intron 35.0%
! CTTCAAGGTGCTATAATTGT+TGG - chr5_4:17747808-17747827 Msa0841430:intron 35.0%
CACTAAATCCCAAGATACAT+TGG + chr5_4:17747843-17747862 None:intergenic 35.0%
CAATGTATCTTGGGATTTAG+TGG - chr5_4:17747841-17747860 Msa0841430:intron 35.0%
!! AATATCTTGGTTTGTCCGTT+AGG - chr5_4:17748048-17748067 Msa0841430:intron 35.0%
!! ATATCTTGGTTTGTCCGTTA+GGG - chr5_4:17748049-17748068 Msa0841430:intron 35.0%
AGATTGAAAACTGACCCTAA+CGG + chr5_4:17748066-17748085 None:intergenic 35.0%
TTCCCTTCCGAAGAAAAAAA+TGG - chr5_4:17748158-17748177 Msa0841430:intron 35.0%
GTTGTGGGACATTAGATAAA+AGG + chr5_4:17748285-17748304 None:intergenic 35.0%
!! ATTGCTTTTGCTGAAGTTGT+GGG + chr5_4:17748300-17748319 None:intergenic 35.0%
ATGTTTGAACTCGGTACATT+GGG + chr5_4:17748946-17748965 None:intergenic 35.0%
AATGTTTGAACTCGGTACAT+TGG + chr5_4:17748947-17748966 None:intergenic 35.0%
!! ATATACCATGAAGCATTGCA+GGG - chr5_4:17748993-17749012 Msa0841430:CDS 35.0%
GAATTCCTTATCCTTTACAG+TGG - chr5_4:17749055-17749074 Msa0841430:CDS 35.0%
ATTCCTTATCCTTTACAGTG+GGG - chr5_4:17749057-17749076 Msa0841430:CDS 35.0%
AAGTCCTGAAGTGGAAAATA+GGG + chr5_4:17749086-17749105 None:intergenic 35.0%
TGACACTATGACCATGATTA+TGG + chr5_4:17749109-17749128 None:intergenic 35.0%
ATAAGTTCCAACCTGCAAAA+AGG + chr5_4:17749246-17749265 None:intergenic 35.0%
! CGTCACTTCAAGTTAATTCA+AGG - chr5_4:17749273-17749292 Msa0841430:intron 35.0%
!! TAGTATATTGGCTGGTCTTT+GGG - chr5_4:17749346-17749365 Msa0841430:intron 35.0%
GCACACAATTAACATCACAA+AGG - chr5_4:17749406-17749425 Msa0841430:intron 35.0%
CACAATTAACATCACAAAGG+TGG - chr5_4:17749409-17749428 Msa0841430:intron 35.0%
TTGATCCTCTTCTCATTTGT+AGG - chr5_4:17749467-17749486 Msa0841430:intron 35.0%
CTTTACCTACAAATGAGAAG+AGG + chr5_4:17749475-17749494 None:intergenic 35.0%
GTAGGTAAAGTAACAACACT+TGG - chr5_4:17749485-17749504 Msa0841430:intron 35.0%
AATTCTGCAATTATGGACGT+TGG + chr5_4:17749514-17749533 None:intergenic 35.0%
TGAACTTCAATTCAGGTGTT+AGG + chr5_4:17749561-17749580 None:intergenic 35.0%
TGCTATACTGTGTTTCATGT+GGG - chr5_4:17749689-17749708 Msa0841430:intron 35.0%
TTCAGGAACATGACAATTGT+CGG - chr5_4:17749765-17749784 Msa0841430:intron 35.0%
AGGCTGGTATTGTTGAAAAT+AGG + chr5_4:17749823-17749842 None:intergenic 35.0%
GCATAAGGAACAAGATAACT+GGG + chr5_4:17749864-17749883 None:intergenic 35.0%
CAGTTATCTTGTTCCTTATG+CGG - chr5_4:17749863-17749882 Msa0841430:intron 35.0%
! TTACTTGTTTAAGGCCTGAA+TGG + chr5_4:17749908-17749927 None:intergenic 35.0%
CGACATGACTTACTTGTTTA+AGG + chr5_4:17749917-17749936 None:intergenic 35.0%
! TCAGTGTTTGGAACAATGAG+AGG + chr5_4:17743954-17743973 None:intergenic 40.0%
TTGATTACTCAGGAGAAGCA+GGG - chr5_4:17744024-17744043 Msa0841430:three_prime_UTR 40.0%
!!! CTTTTTCAATCGAGAGGAAG+AGG - chr5_4:17744071-17744090 Msa0841430:three_prime_UTR 40.0%
!! TTTTAGGAAGTGAGAGTGAC+TGG + chr5_4:17744994-17745013 None:intergenic 40.0%
!! GGAACAAAAGGTGCAACTTT+TGG + chr5_4:17745171-17745190 None:intergenic 40.0%
! GCACCTTTTGTTCCAAAAAC+TGG - chr5_4:17745177-17745196 Msa0841430:intron 40.0%
!! CTTGGGTTGTAACCAGTTTT+TGG + chr5_4:17745192-17745211 None:intergenic 40.0%
ACCCAAGAGAATTACGTTCA+TGG - chr5_4:17745205-17745224 Msa0841430:intron 40.0%
CCCATGAACGTAATTCTCTT+GGG + chr5_4:17745209-17745228 None:intergenic 40.0%
CCCAAGAGAATTACGTTCAT+GGG - chr5_4:17745206-17745225 Msa0841430:intron 40.0%
! GTTCATGGGCTAAGAAAACT+GGG - chr5_4:17745220-17745239 Msa0841430:intron 40.0%
TCTGATTATTCAGGTGAAGC+AGG - chr5_4:17745249-17745268 Msa0841430:intron 40.0%
CTGATTATTCAGGTGAAGCA+GGG - chr5_4:17745250-17745269 Msa0841430:intron 40.0%
CCTCTTCCTCTATGATGAAA+AGG + chr5_4:17745300-17745319 None:intergenic 40.0%
! CCTTTTCATCATAGAGGAAG+AGG - chr5_4:17745297-17745316 Msa0841430:CDS 40.0%
! ACAATCACAAGCTGGTGTTT+TGG - chr5_4:17745383-17745402 Msa0841430:CDS 40.0%
! GAACCTGTTTTGCCTTTGAA+TGG - chr5_4:17745429-17745448 Msa0841430:CDS 40.0%
TCACCATTCAAAGGCAAAAC+AGG + chr5_4:17745435-17745454 None:intergenic 40.0%
! GTTTTGCCTTTGAATGGTGA+TGG - chr5_4:17745435-17745454 Msa0841430:CDS 40.0%
! GAGAGGAAAGTTGGTTTAAG+AGG - chr5_4:17745459-17745478 Msa0841430:CDS 40.0%
! GGGAATGGTGTTAATGTGAA+TGG - chr5_4:17745480-17745499 Msa0841430:CDS 40.0%
!! GTGAATGGTAATGGTGGTAA+TGG - chr5_4:17745495-17745514 Msa0841430:CDS 40.0%
!! ACATGGTGATGGTGAAGTTA+AGG - chr5_4:17745575-17745594 Msa0841430:intron 40.0%
TCTCCAAATTCAACTCCTTC+TGG + chr5_4:17745612-17745631 None:intergenic 40.0%
GAAGGAGTTGAATTTGGAGA+TGG - chr5_4:17745612-17745631 Msa0841430:intron 40.0%
!! TTGAATTTGGAGATGGTGGA+TGG - chr5_4:17745619-17745638 Msa0841430:intron 40.0%
AGTCCACACTTCAAATCAGA+TGG + chr5_4:17745651-17745670 None:intergenic 40.0%
TCGGAATCATATTGAAGTGG+AGG + chr5_4:17746343-17746362 None:intergenic 40.0%
GCTTCGGAATCATATTGAAG+TGG + chr5_4:17746346-17746365 None:intergenic 40.0%
!! CGCTATTTTAAACTCGGCTT+CGG + chr5_4:17746362-17746381 None:intergenic 40.0%
! CGAAGCCGAGTTTAAAATAG+CGG - chr5_4:17746360-17746379 Msa0841430:intron 40.0%
TTAACCAAAACTCTCCGCAA+TGG + chr5_4:17746414-17746433 None:intergenic 40.0%
ATGGTCCATGACTGTGATTT+AGG + chr5_4:17746507-17746526 None:intergenic 40.0%
CCGTGTAGGGTTTCAAATAA+TGG + chr5_4:17746526-17746545 None:intergenic 40.0%
GCCTTGTCAAGTCAGATTAT+TGG - chr5_4:17746546-17746565 Msa0841430:CDS 40.0%
! GCCAATAATCTGACTTGACA+AGG + chr5_4:17746550-17746569 None:intergenic 40.0%
!! GAATCGAACTTGTTGGTTTC+AGG + chr5_4:17746572-17746591 None:intergenic 40.0%
GCAACTAGAATCGAACTTGT+TGG + chr5_4:17746579-17746598 None:intergenic 40.0%
AACACTTGCAGTCATCTCAT+TGG + chr5_4:17746921-17746940 None:intergenic 40.0%
GAGATGACTGCAAGTGTTTA+TGG - chr5_4:17746923-17746942 Msa0841430:CDS 40.0%
AGAAACTGGGAAAAATCAGG+GGG + chr5_4:17747083-17747102 None:intergenic 40.0%
CAGCACTATATATCATTGGC+TGG - chr5_4:17747258-17747277 Msa0841430:intron 40.0%
TGACTGGTACCATGACTAAT+GGG + chr5_4:17747299-17747318 None:intergenic 40.0%
ATGACTGGTACCATGACTAA+TGG + chr5_4:17747300-17747319 None:intergenic 40.0%
ATTAGTCATGGTACCAGTCA+TGG - chr5_4:17747299-17747318 Msa0841430:intron 40.0%
TTAGTCATGGTACCAGTCAT+GGG - chr5_4:17747300-17747319 Msa0841430:intron 40.0%
CACATAATGAGGGAACTTCA+AGG - chr5_4:17747793-17747812 Msa0841430:intron 40.0%
TGGTGAACACAAGGAAGATA+TGG + chr5_4:17747906-17747925 None:intergenic 40.0%
ATGTGTCTCTTTATCTCGGA+TGG + chr5_4:17747975-17747994 None:intergenic 40.0%
!! CATTGCTTTTGCTGAAGTTG+TGG + chr5_4:17748301-17748320 None:intergenic 40.0%
TAGGTTAATCAACCCTGTTG+TGG - chr5_4:17748394-17748413 Msa0841430:intron 40.0%
GGTTTAGCGTTCTTCAGTTA+CGG - chr5_4:17748440-17748459 Msa0841430:intron 40.0%
CACTGTTCCACAAATTGCAT+TGG - chr5_4:17748493-17748512 Msa0841430:intron 40.0%
ATAACTGAAGAACCCTGCAT+TGG + chr5_4:17748551-17748570 None:intergenic 40.0%
! TGTTTGTTGAAGCATCTTCG+AGG - chr5_4:17748694-17748713 Msa0841430:intron 40.0%
CTTCGAGGAATATCTATCTC+TGG - chr5_4:17748709-17748728 Msa0841430:intron 40.0%
CAAGTTATTGTTGCGCTCAA+CGG + chr5_4:17748868-17748887 None:intergenic 40.0%
! TTTGCATCCCTTTTAACAGC+TGG - chr5_4:17748892-17748911 Msa0841430:intron 40.0%
! TTGCATCCCTTTTAACAGCT+GGG - chr5_4:17748893-17748912 Msa0841430:intron 40.0%
!! CATATACCATGAAGCATTGC+AGG - chr5_4:17748992-17749011 Msa0841430:CDS 40.0%
ATACCCCACTGTAAAGGATA+AGG + chr5_4:17749063-17749082 None:intergenic 40.0%
! GTATCCCTATTTTCCACTTC+AGG - chr5_4:17749079-17749098 Msa0841430:CDS 40.0%
GAAGTCCTGAAGTGGAAAAT+AGG + chr5_4:17749087-17749106 None:intergenic 40.0%
TGATTATGGAAGTCCTGAAG+TGG + chr5_4:17749095-17749114 None:intergenic 40.0%
CTTCAGGACTTCCATAATCA+TGG - chr5_4:17749095-17749114 Msa0841430:CDS 40.0%
AATCATGGTCATAGTGTCAC+TGG - chr5_4:17749110-17749129 Msa0841430:CDS 40.0%
! ACTGGTTGCTTCTGTTGATT+CGG - chr5_4:17749128-17749147 Msa0841430:CDS 40.0%
! AAAGCAAGTATCGCATTCAG+TGG - chr5_4:17749191-17749210 Msa0841430:CDS 40.0%
!!! CACTGGTTTATCCTTTTTGC+AGG - chr5_4:17749232-17749251 Msa0841430:CDS 40.0%
! GGTTTATCCTTTTTGCAGGT+TGG - chr5_4:17749236-17749255 Msa0841430:CDS 40.0%
GGAGGGTTTCTGTAGTATAT+TGG - chr5_4:17749334-17749353 Msa0841430:intron 40.0%
GGTTTCTGTAGTATATTGGC+TGG - chr5_4:17749338-17749357 Msa0841430:intron 40.0%
!! GTAGTATATTGGCTGGTCTT+TGG - chr5_4:17749345-17749364 Msa0841430:intron 40.0%
!! AGTATATTGGCTGGTCTTTG+GGG - chr5_4:17749347-17749366 Msa0841430:intron 40.0%
TTCTGTCAAAGTCGTTGAAC+CGG + chr5_4:17749381-17749400 None:intergenic 40.0%
CTGCTATACTGTGTTTCATG+TGG - chr5_4:17749688-17749707 Msa0841430:intron 40.0%
GACCATACTGTAAAGTCGAT+AGG + chr5_4:17749734-17749753 None:intergenic 40.0%
CGCATAAGGAACAAGATAAC+TGG + chr5_4:17749865-17749884 None:intergenic 40.0%
! TGTTTAAGGCCTGAATGGAA+TGG + chr5_4:17749903-17749922 None:intergenic 40.0%
TCTTATGTCCATGAACATGG+TGG - chr5_4:17750095-17750114 Msa0841430:intron 40.0%
! AAGAACGAGGAGTGTATACA+TGG - chr5_4:17750169-17750188 Msa0841430:intron 40.0%
CAACACCATGCAAGTTTCTT+TGG + chr5_4:17750249-17750268 None:intergenic 40.0%
! TTGCTGTTGGTTGAAGTGAT+TGG - chr5_4:17750266-17750285 Msa0841430:CDS 40.0%
! TGCTGTTGGTTGAAGTGATT+GGG - chr5_4:17750267-17750286 Msa0841430:CDS 40.0%
CTTGATTACTCAGGAGAAGC+AGG - chr5_4:17744023-17744042 Msa0841430:three_prime_UTR 45.0%
AAGAGGGTCTTCATCTTCTC+CGG - chr5_4:17744088-17744107 Msa0841430:three_prime_UTR 45.0%
GGGGAGAATAGAACATGACA+AGG - chr5_4:17744133-17744152 Msa0841430:CDS 45.0%
!! AACAACGGGTTTTTGCTGGT+TGG + chr5_4:17744169-17744188 None:intergenic 45.0%
AGATCGATGACATCGATGCT+TGG - chr5_4:17744386-17744405 Msa0841430:intron 45.0%
GATCGATGACATCGATGCTT+GGG - chr5_4:17744387-17744406 Msa0841430:intron 45.0%
TGGATTTACCAGAATGACCC+TGG + chr5_4:17744956-17744975 None:intergenic 45.0%
GCCCATGAACGTAATTCTCT+TGG + chr5_4:17745210-17745229 None:intergenic 45.0%
! CGTTCATGGGCTAAGAAAAC+TGG - chr5_4:17745219-17745238 Msa0841430:intron 45.0%
CTTGTGATTGTGAAGCTGGT+TGG + chr5_4:17745374-17745393 None:intergenic 45.0%
!! ATCACAAGCTGGTGTTTTGG+AGG - chr5_4:17745386-17745405 Msa0841430:CDS 45.0%
!!! GTGTTTTGGAGGAGAATGTG+AGG - chr5_4:17745397-17745416 Msa0841430:CDS 45.0%
CTCTCACCATCACCATTCAA+AGG + chr5_4:17745444-17745463 None:intergenic 45.0%
!! CTTTGAATGGTGATGGTGAG+AGG - chr5_4:17745442-17745461 Msa0841430:CDS 45.0%
!! GGTAATGGTGGTAATGGTCA+TGG - chr5_4:17745501-17745520 Msa0841430:CDS 45.0%
GATGAGGAGAATGTGGTACA+TGG - chr5_4:17745558-17745577 Msa0841430:intron 45.0%
GAGAATGTGGTACATGGTGA+TGG - chr5_4:17745564-17745583 Msa0841430:intron 45.0%
GGAGTTGAATTTGGAGATGG+TGG - chr5_4:17745615-17745634 Msa0841430:intron 45.0%
!! ATTTGGAGATGGTGGATGGA+AGG - chr5_4:17745623-17745642 Msa0841430:intron 45.0%
!! TTTGGAGATGGTGGATGGAA+GGG - chr5_4:17745624-17745643 Msa0841430:intron 45.0%
! GGACCATCTGATTTGAAGTG+TGG - chr5_4:17745645-17745664 Msa0841430:intron 45.0%
! GTTTTGCCATGTCTGAATGC+TGG - chr5_4:17746262-17746281 Msa0841430:intron 45.0%
GATAAAGGCTTGGAGGTGAT+GGG + chr5_4:17746309-17746328 None:intergenic 45.0%
AGATAAAGGCTTGGAGGTGA+TGG + chr5_4:17746310-17746329 None:intergenic 45.0%
!! CGCGACCGCTATTTTAAACT+CGG + chr5_4:17746368-17746387 None:intergenic 45.0%
! CGAGTTTAAAATAGCGGTCG+CGG - chr5_4:17746366-17746385 Msa0841430:intron 45.0%
GTGCAGTATAGTTGTGATGC+CGG + chr5_4:17747467-17747486 None:intergenic 45.0%
TCCCTTGCACTAAAGGAAGT+CGG + chr5_4:17747504-17747523 None:intergenic 45.0%
CTCGTTTGTGTATTTAGCGC+CGG - chr5_4:17747525-17747544 Msa0841430:intron 45.0%
GCTTGATGTCTATCCTACTC+AGG - chr5_4:17747863-17747882 Msa0841430:intron 45.0%
CCAAGCAAATACCAGCTTGT+GGG + chr5_4:17748469-17748488 None:intergenic 45.0%
TCCAAGCAAATACCAGCTTG+TGG + chr5_4:17748470-17748489 None:intergenic 45.0%
AGTCATGCAGTACCAATGCA+GGG - chr5_4:17748536-17748555 Msa0841430:intron 45.0%
CGTTGAGCGCAACAATAACT+TGG - chr5_4:17748866-17748885 Msa0841430:intron 45.0%
! TGCATCCCTTTTAACAGCTG+GGG - chr5_4:17748894-17748913 Msa0841430:intron 45.0%
TACACCCCCAGCTGTTAAAA+GGG + chr5_4:17748902-17748921 None:intergenic 45.0%
ATACACCCCCAGCTGTTAAA+AGG + chr5_4:17748903-17748922 None:intergenic 45.0%
TGCAGCAGTAGACAATGCAT+CGG + chr5_4:17749028-17749047 None:intergenic 45.0%
ATGCATTGTCTACTGCTGCA+TGG - chr5_4:17749028-17749047 Msa0841430:CDS 45.0%
TGCATTGTCTACTGCTGCAT+GGG - chr5_4:17749029-17749048 Msa0841430:CDS 45.0%
ATAGGGATACCCCACTGTAA+AGG + chr5_4:17749069-17749088 None:intergenic 45.0%
GTATCAAGACTCTGAGTCAC+TGG - chr5_4:17749215-17749234 Msa0841430:CDS 45.0%
AACCCTCCAATGCAATTCCT+CGG + chr5_4:17749322-17749341 None:intergenic 45.0%
ACATCACAAAGGTGGCAAGT+AGG - chr5_4:17749417-17749436 Msa0841430:intron 45.0%
! AGTAGGAGAGTAGTGGAACT+TGG - chr5_4:17749434-17749453 Msa0841430:intron 45.0%
!! GGCCTATCGACTTTACAGTA+TGG - chr5_4:17749729-17749748 Msa0841430:intron 45.0%
! ATGGTCAATCAGCTAGCTTC+AGG - chr5_4:17749748-17749767 Msa0841430:intron 45.0%
AGGATGGAATGGACATTCCA+AGG + chr5_4:17749803-17749822 None:intergenic 45.0%
GTATAAGACTTGACTCAGGC+TGG + chr5_4:17749839-17749858 None:intergenic 45.0%
GGCAGTATAAGACTTGACTC+AGG + chr5_4:17749843-17749862 None:intergenic 45.0%
CGCTCTTATGTCCATGAACA+TGG - chr5_4:17750092-17750111 Msa0841430:intron 45.0%
CAGTGTAACCACCATGTTCA+TGG + chr5_4:17750106-17750125 None:intergenic 45.0%
GAACATGGTGGTTACACTGT+TGG - chr5_4:17750107-17750126 Msa0841430:intron 45.0%
!! ACTGTTGGTGGCATTTCTAC+TGG - chr5_4:17750122-17750141 Msa0841430:intron 45.0%
! CTCGTTCTTGTTTACTTCCC+GGG + chr5_4:17750158-17750177 None:intergenic 45.0%
! CCTCGTTCTTGTTTACTTCC+CGG + chr5_4:17750159-17750178 None:intergenic 45.0%
GGAATATTCAGATTGCAGCG+AGG + chr5_4:17750223-17750242 None:intergenic 45.0%
CCATGCAAGTTTCTTTGGCA+GGG + chr5_4:17750244-17750263 None:intergenic 45.0%
ACCATGCAAGTTTCTTTGGC+AGG + chr5_4:17750245-17750264 None:intergenic 45.0%
!! AACTTGCATGGTGTTGCTGT+TGG - chr5_4:17750253-17750272 Msa0841430:CDS 45.0%
!!! TTTGTATTATAATTAAATTT+TGG - chr5_4:17744319-17744338 Msa0841430:intron 5.0%
!!! TTTTTTATTTTTATTTTTGT+AGG - chr5_4:17749621-17749640 Msa0841430:intron 5.0%
CAAAAACCCGTTGTTGCCCT+TGG - chr5_4:17744174-17744193 Msa0841430:CDS 50.0%
ACTTGAGCCAAGGGCAACAA+CGG + chr5_4:17744184-17744203 None:intergenic 50.0%
TTGCCCTTGGCTCAAGTGTT+TGG - chr5_4:17744187-17744206 Msa0841430:CDS 50.0%
TGCCCTTGGCTCAAGTGTTT+GGG - chr5_4:17744188-17744207 Msa0841430:CDS 50.0%
CTCCCAAACACTTGAGCCAA+GGG + chr5_4:17744193-17744212 None:intergenic 50.0%
ACTCCCAAACACTTGAGCCA+AGG + chr5_4:17744194-17744213 None:intergenic 50.0%
ACTGGTGAAGGAGATGGAAG+TGG + chr5_4:17744976-17744995 None:intergenic 50.0%
AGAGTGACTGGTGAAGGAGA+TGG + chr5_4:17744982-17745001 None:intergenic 50.0%
GAAGTGAGAGTGACTGGTGA+AGG + chr5_4:17744988-17745007 None:intergenic 50.0%
TGGATCTCAACACCCCTAGT+TGG + chr5_4:17745354-17745373 None:intergenic 50.0%
CCAGCTTGTGATTGTGAAGC+TGG + chr5_4:17745378-17745397 None:intergenic 50.0%
CCAGCTTCACAATCACAAGC+TGG - chr5_4:17745375-17745394 Msa0841430:CDS 50.0%
! GGTGATGGTGAGAGGAAAGT+TGG - chr5_4:17745450-17745469 Msa0841430:CDS 50.0%
TCATCCTTCTCCTCAGTCAC+AGG + chr5_4:17745543-17745562 None:intergenic 50.0%
TGTGACTGAGGAGAAGGATG+AGG - chr5_4:17745542-17745561 Msa0841430:intron 50.0%
GGAGAAGGATGAGGAGAATG+TGG - chr5_4:17745551-17745570 Msa0841430:intron 50.0%
GACATGGCAAAACTCGTGCA+GGG + chr5_4:17746255-17746274 None:intergenic 50.0%
AGACATGGCAAAACTCGTGC+AGG + chr5_4:17746256-17746275 None:intergenic 50.0%
CAATGGCAAGGATTGCGACA+TGG + chr5_4:17746397-17746416 None:intergenic 50.0%
TGTCGCAATCCTTGCCATTG+CGG - chr5_4:17746397-17746416 Msa0841430:intron 50.0%
CAAAACTCTCCGCAATGGCA+AGG + chr5_4:17746409-17746428 None:intergenic 50.0%
! CTTGCCATTGCGGAGAGTTT+TGG - chr5_4:17746407-17746426 Msa0841430:intron 50.0%
CGGGTCCTAAATCACAGTCA+TGG - chr5_4:17746499-17746518 Msa0841430:intron 50.0%
ACATCTGTTCCACCCATGAC+TGG + chr5_4:17747315-17747334 None:intergenic 50.0%
ACCCGACTTCCTTTAGTGCA+AGG - chr5_4:17747499-17747518 Msa0841430:intron 50.0%
CCCTTGCACTAAAGGAAGTC+GGG + chr5_4:17747503-17747522 None:intergenic 50.0%
CCCGACTTCCTTTAGTGCAA+GGG - chr5_4:17747500-17747519 Msa0841430:intron 50.0%
AACGAGCTCCCTTGCACTAA+AGG + chr5_4:17747511-17747530 None:intergenic 50.0%
AAACCTACAGCAGCAACCGT+TGG + chr5_4:17748425-17748444 None:intergenic 50.0%
AGTTACGGTTTCCCACAAGC+TGG - chr5_4:17748455-17748474 Msa0841430:intron 50.0%
CCCACAAGCTGGTATTTGCT+TGG - chr5_4:17748466-17748485 Msa0841430:intron 50.0%
GAGTCATGCAGTACCAATGC+AGG - chr5_4:17748535-17748554 Msa0841430:intron 50.0%
! GCATCCCTTTTAACAGCTGG+GGG - chr5_4:17748895-17748914 Msa0841430:intron 50.0%
ATCAGCCCTGCAATGCTTCA+TGG + chr5_4:17749001-17749020 None:intergenic 50.0%
AATTCAAGGCCTCCAACTCC+AGG - chr5_4:17749287-17749306 Msa0841430:intron 50.0%
TGTGAGCCGAGGAATTGCAT+TGG - chr5_4:17749313-17749332 Msa0841430:intron 50.0%
AGCCGAGGAATTGCATTGGA+GGG - chr5_4:17749317-17749336 Msa0841430:intron 50.0%
TCTCCTTGCTTCCATTCCAC+AGG - chr5_4:17749656-17749675 Msa0841430:intron 50.0%
ACACAGTATAGCAGCAGCCA+AGG + chr5_4:17749682-17749701 None:intergenic 50.0%
TTTCATGTGGGCTCTTACCG+TGG - chr5_4:17749701-17749720 Msa0841430:intron 50.0%
TCAAGTGGGCCATTCCATTC+AGG - chr5_4:17749891-17749910 Msa0841430:intron 50.0%
CATGGTGGTTACACTGTTGG+TGG - chr5_4:17750110-17750129 Msa0841430:intron 50.0%
TCTACTGGACAACACTGTCC+CGG - chr5_4:17750137-17750156 Msa0841430:intron 50.0%
CCGGGAAGTAAACAAGAACG+AGG - chr5_4:17750156-17750175 Msa0841430:intron 50.0%
CCCTGCCAAAGAAACTTGCA+TGG - chr5_4:17750241-17750260 Msa0841430:CDS 50.0%
!! GGGCAACAACGGGTTTTTGC+TGG + chr5_4:17744173-17744192 None:intergenic 55.0%
CTTGAGCCAAGGGCAACAAC+GGG + chr5_4:17744183-17744202 None:intergenic 55.0%
TCAACTAACGGCCACACTCC+AGG - chr5_4:17744935-17744954 Msa0841430:CDS 55.0%
CAACTAACGGCCACACTCCA+GGG - chr5_4:17744936-17744955 Msa0841430:CDS 55.0%
ACCAGAATGACCCTGGAGTG+TGG + chr5_4:17744949-17744968 None:intergenic 55.0%
TCAGGTGAAGCAGGGACTAG+TGG - chr5_4:17745258-17745277 Msa0841430:intron 55.0%
TGCAGTTGCTCCTGTGACTG+AGG - chr5_4:17745530-17745549 Msa0841430:CDS 55.0%
TGCTCCTGTGACTGAGGAGA+AGG - chr5_4:17745536-17745555 Msa0841430:intron 55.0%
TGTGCGCCAGCATTCAGACA+TGG + chr5_4:17746271-17746290 None:intergenic 55.0%
!! GGTGATGGGAGGGACATACT+TGG + chr5_4:17746295-17746314 None:intergenic 55.0%
!! AAGGCTTGGAGGTGATGGGA+GGG + chr5_4:17746305-17746324 None:intergenic 55.0%
!! AAAGGCTTGGAGGTGATGGG+AGG + chr5_4:17746306-17746325 None:intergenic 55.0%
GACTTGACAAGGCCCGTGTA+GGG + chr5_4:17746539-17746558 None:intergenic 55.0%
TGACTTGACAAGGCCCGTGT+AGG + chr5_4:17746540-17746559 None:intergenic 55.0%
GTCATGGTACCAGTCATGGG+TGG - chr5_4:17747303-17747322 Msa0841430:intron 55.0%
CTCACAACTCCTGGAGTTGG+AGG + chr5_4:17749299-17749318 None:intergenic 55.0%
ATTCCTCGGCTCACAACTCC+TGG + chr5_4:17749308-17749327 None:intergenic 55.0%
GAGCCGAGGAATTGCATTGG+AGG - chr5_4:17749316-17749335 Msa0841430:intron 55.0%
!! TTGGCTGGTCTTTGGGGTTC+AGG - chr5_4:17749353-17749372 Msa0841430:intron 55.0%
!! GGTCTTTGGGGTTCAGGTAC+CGG - chr5_4:17749359-17749378 Msa0841430:intron 55.0%
GGTGGCAAGTAGGAGAGTAG+TGG - chr5_4:17749427-17749446 Msa0841430:intron 55.0%
AGGCCTGTGGAATGGAAGCA+AGG + chr5_4:17749662-17749681 None:intergenic 55.0%
TGCTTCCATTCCACAGGCCT+TGG - chr5_4:17749662-17749681 Msa0841430:intron 55.0%
TGGGCTCTTACCGTGGCATT+GGG - chr5_4:17749708-17749727 Msa0841430:intron 55.0%
AGTCGATAGGCCCAATGCCA+CGG + chr5_4:17749721-17749740 None:intergenic 55.0%
GTCGGCGTTGCATTGTTCCT+TGG - chr5_4:17749783-17749802 Msa0841430:intron 55.0%
CTTATGCGGCAGCGTCAAGT+GGG - chr5_4:17749877-17749896 Msa0841430:intron 55.0%
CTACTGGACAACACTGTCCC+GGG - chr5_4:17750138-17750157 Msa0841430:intron 55.0%
GAGAGCTGAAGACATTGCCG+CGG - chr5_4:17750194-17750213 Msa0841430:intron 55.0%
GCCACACTCCAGGGTCATTC+TGG - chr5_4:17744945-17744964 Msa0841430:CDS 60.0%
CCGTTGGCGCAACCACAACA+GGG + chr5_4:17748409-17748428 None:intergenic 60.0%
CCCTGTTGTGGTTGCGCCAA+CGG - chr5_4:17748406-17748425 Msa0841430:intron 60.0%
ACCGTTGGCGCAACCACAAC+AGG + chr5_4:17748410-17748429 None:intergenic 60.0%
CGGCTCACAACTCCTGGAGT+TGG + chr5_4:17749302-17749321 None:intergenic 60.0%
ACTCCAGGAGTTGTGAGCCG+AGG - chr5_4:17749302-17749321 Msa0841430:intron 60.0%
AGCAGCCAAGGCCTGTGGAA+TGG + chr5_4:17749670-17749689 None:intergenic 60.0%
ATAGCAGCAGCCAAGGCCTG+TGG + chr5_4:17749675-17749694 None:intergenic 60.0%
GTGGGCTCTTACCGTGGCAT+TGG - chr5_4:17749707-17749726 Msa0841430:intron 60.0%
CCACTTGACGCTGCCGCATA+AGG + chr5_4:17749879-17749898 None:intergenic 60.0%
CCTTATGCGGCAGCGTCAAG+TGG - chr5_4:17749876-17749895 Msa0841430:intron 60.0%
! AGATTGCAGCGAGGCATCCG+CGG + chr5_4:17750214-17750233 None:intergenic 60.0%
GCGCCAACGGTTGCTGCTGT+AGG - chr5_4:17748419-17748438 Msa0841430:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 17743903 17750509 17743903 ID=Msa0841430;Name=Msa0841430
chr5_4 mRNA 17743903 17750509 17743903 ID=Msa0841430-mRNA-1;Parent=Msa0841430;Name=Msa0841430-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.6|0.43|1|0.66|0.56|16|225|775
chr5_4 exon 17743903 17744337 17743903 ID=Msa0841430-mRNA-1:exon:7534;Parent=Msa0841430-mRNA-1
chr5_4 exon 17744489 17744652 17744489 ID=Msa0841430-mRNA-1:exon:7533;Parent=Msa0841430-mRNA-1
chr5_4 exon 17744662 17744769 17744662 ID=Msa0841430-mRNA-1:exon:7532;Parent=Msa0841430-mRNA-1
chr5_4 exon 17744924 17745158 17744924 ID=Msa0841430-mRNA-1:exon:7531;Parent=Msa0841430-mRNA-1
chr5_4 exon 17745263 17745337 17745263 ID=Msa0841430-mRNA-1:exon:7530;Parent=Msa0841430-mRNA-1
chr5_4 exon 17745362 17745550 17745362 ID=Msa0841430-mRNA-1:exon:7529;Parent=Msa0841430-mRNA-1
chr5_4 exon 17745656 17745706 17745656 ID=Msa0841430-mRNA-1:exon:7528;Parent=Msa0841430-mRNA-1
chr5_4 exon 17745880 17746015 17745880 ID=Msa0841430-mRNA-1:exon:7527;Parent=Msa0841430-mRNA-1
chr5_4 exon 17746528 17746628 17746528 ID=Msa0841430-mRNA-1:exon:7526;Parent=Msa0841430-mRNA-1
chr5_4 exon 17746818 17746988 17746818 ID=Msa0841430-mRNA-1:exon:7525;Parent=Msa0841430-mRNA-1
chr5_4 exon 17747080 17747177 17747080 ID=Msa0841430-mRNA-1:exon:7524;Parent=Msa0841430-mRNA-1
chr5_4 exon 17748722 17748877 17748722 ID=Msa0841430-mRNA-1:exon:7523;Parent=Msa0841430-mRNA-1
chr5_4 exon 17748902 17749150 17748902 ID=Msa0841430-mRNA-1:exon:7522;Parent=Msa0841430-mRNA-1
chr5_4 exon 17749171 17749273 17749171 ID=Msa0841430-mRNA-1:exon:7521;Parent=Msa0841430-mRNA-1
chr5_4 exon 17750201 17750321 17750201 ID=Msa0841430-mRNA-1:exon:7520;Parent=Msa0841430-mRNA-1
chr5_4 exon 17750349 17750509 17750349 ID=Msa0841430-mRNA-1:exon:7519;Parent=Msa0841430-mRNA-1
chr5_4 CDS 17750349 17750509 17750349 ID=Msa0841430-mRNA-1:cds;Parent=Msa0841430-mRNA-1
chr5_4 CDS 17750201 17750321 17750201 ID=Msa0841430-mRNA-1:cds;Parent=Msa0841430-mRNA-1
chr5_4 CDS 17749171 17749273 17749171 ID=Msa0841430-mRNA-1:cds;Parent=Msa0841430-mRNA-1
chr5_4 CDS 17748902 17749150 17748902 ID=Msa0841430-mRNA-1:cds;Parent=Msa0841430-mRNA-1
chr5_4 CDS 17748722 17748877 17748722 ID=Msa0841430-mRNA-1:cds;Parent=Msa0841430-mRNA-1
chr5_4 CDS 17747080 17747177 17747080 ID=Msa0841430-mRNA-1:cds;Parent=Msa0841430-mRNA-1
chr5_4 CDS 17746818 17746988 17746818 ID=Msa0841430-mRNA-1:cds;Parent=Msa0841430-mRNA-1
chr5_4 CDS 17746528 17746628 17746528 ID=Msa0841430-mRNA-1:cds;Parent=Msa0841430-mRNA-1
chr5_4 CDS 17745880 17746015 17745880 ID=Msa0841430-mRNA-1:cds;Parent=Msa0841430-mRNA-1
chr5_4 CDS 17745656 17745706 17745656 ID=Msa0841430-mRNA-1:cds;Parent=Msa0841430-mRNA-1
chr5_4 CDS 17745362 17745550 17745362 ID=Msa0841430-mRNA-1:cds;Parent=Msa0841430-mRNA-1
chr5_4 CDS 17745263 17745337 17745263 ID=Msa0841430-mRNA-1:cds;Parent=Msa0841430-mRNA-1
chr5_4 CDS 17744924 17745158 17744924 ID=Msa0841430-mRNA-1:cds;Parent=Msa0841430-mRNA-1
chr5_4 CDS 17744662 17744769 17744662 ID=Msa0841430-mRNA-1:cds;Parent=Msa0841430-mRNA-1
chr5_4 CDS 17744489 17744652 17744489 ID=Msa0841430-mRNA-1:cds;Parent=Msa0841430-mRNA-1
chr5_4 CDS 17744128 17744337 17744128 ID=Msa0841430-mRNA-1:cds;Parent=Msa0841430-mRNA-1
chr5_4 three_prime_UTR 17743903 17744127 17743903 ID=Msa0841430-mRNA-1:three_prime_utr;Parent=Msa0841430-mRNA-1
Gene Sequence

>Msa0841430

ATGGAAATTGGGTCGAACTCAAAATCATTGAACAAAAGAAGTTGGAATCCTCTCATTGTTCCAAACACTGATCACAATCCAAAAAACTTAAATTCATGGGCTAAGAAAACCGATTTTGTACTTGATTACTCAGGAGAAGCAGGGTCAAGTGAAAGTGAAAAAGGGTCTTCATCTTCTCCGGAGATAGAGAAAGATTCAATTGTGGGGAGAATAGAACATGACAAGGATATTGAGATCCAACCAGCAAAAACCCGTTGTTGCCCTTGGCTCAAGTGTTTGGGAAAAAAGTGTAAATGGAAAACAAAGCTGAACCAAAAGTTGCACCTTTTGTTCCAAAAACTGGTTACAACCCAAGAGAATTACGTTCATGGGCTAAGAAAACTGGGTGAAGCAGGGACTAGTGGAAGTGAAAAGTTTGAACCTTTTCATCATAGAGGAAGAGGGTCATCTTCTTCTCCTAAGATAGAGATAGATCCAACTAGGGGTGTTGAGATCCAACCAGCTTCACAATCACAAGCTGGTGTTTTGGAGGAGAATGTGAGGAAAGAGAATGAACCTGTTTTGCCTTTGAATGGTGATGGTGAGAGGAAAGTTGGTTTAAGAGGGAATGGTGTTAATGTGAATGGTAATGGTGTTGCTCCTGTGACTGAGGAGAAGGATGAGGAGAATGTGGTACATGGTGATGGTGAAGTTAAGGTTAATGTGTTTCCAGAAGGAGTTGAATTTGGAGATGGTGGATGGAAGGGACCATCTGATTTGAAGTGTGGACTTAAAGAAAATCCGGGTTTAGTATCTCTTATCTATTATGGCTTACAGCACTATATATCATTGGCTGGTTCACTTGTATTAATCCCATTAGTCATGGTACCAGTCATGGGTGGAACAGATAAGGATACTGCTACCGTAATTTCTACAATGTTGTTTCTTTCCGGCATCACAACTATACTGCACTCTTACTTTGGCACCCGACTTCCTTTAGTGCAAGGGAGCTCGTTTGTGTATTTAGCGCCGGCATTAGTCATTATAAATGCTCAAGAATATCGGAATCTTACAGAACACAAATTTAGACACATAATGAGGGAACTTCAAGGTGCTATAATTGTTGGTTCAATATTCCAATGTATCTTGGGATTTAGTGGCTTGATGTCTATCCTACTCAGGTTAATCAACCCTGTTGTGGTTGCGCCAACGGTTGCTGCTGTAGGTTTAGCGTTCTTCAGTTACGGTTTCCCACAAGCTGGTATTTGCTTGGAAATCACTGTTCCACAAATTGCATTGGTTCTATTATTCACTCTGCATCTTCGAGGAATATCTATCTCTGGACGCCACTTATTTCGAATTTATGCTGTTCCGTTGAGCGCAACAATAACTTGGATATTTGCATCCCTTTTAACAGCTGGGGGTGTATATAATTACAAAGAATGCAATCCCAATGTACCGAGTTCAAACATTCTTACTGATGCGTGTAGAAAACATGCATATACCATGAAGCATTGCAGGGCTGATGTTTCCGATGCATTGTCTACTGCTGCATGGTGGGGTATCCCTATTTTCCACTTCAGGACTTCCATAATCATGGTCATAGTGTCACTGGTTGCTTCTGTTGATTCGGTTGGAACTTATCGTACTACGTCACTTCAAGTTAATTCAAGGCCTCCAACTCCAGGAGTTGTGAGCCGAGGAATTGCATTGGAGGGTTTCTGTAGTATATTGGCTGGTCTTTGGGGTTCAGGTACCGGTTCAACGACTTTGACAGAAAACATGCACACAATTAACATCACAAAGGTGGCAAGTAGGAGAGTAGTGGAACTTGGAGCAGTTTTCTTGATCCTCTTCTCATTTGTAGGAAAAGTGGGTGCTCTCCTTGCTTCCATTCCACAGGCCTTGGCTGCTGCTATACTGTGTTTCATGTGGGCTCTTACCGTGGCATTGGGCCTATCGACTTTACAGTATGCTAGCTTCAGGAACATGACAATTGTCGGCGTTGCATTGTTCCTTGGAATGTCCATTCCATCCTATTTTCAACAATACCAGCCTGAGTCAAGTCTTATACTGCCCAGTTATCTTGTTCCTTATGCGGCAGCGTCAAGTGGGCCATTCCATTCAGGCCTTAAACAACTTGATTTTGCTATCAACGCTCTTATGTCCATGAACATGGTGGTTACACTGTTGGTGGCATTTCTACTGGACAACACTGTCCCGGGAAGTAAACAAGAACGAGGAGTGTATACATGGTCGAGAGCTGAAGACATTGCCGCGGATGCCTCGCTGCAATCTGAATATTCCCTGCCAAAGAAACTTGCATGGTGTTGCTGTTGGTTGAAGTGA
Protein sequence

>Msa0841430

MEIGSNSKSLNKRSWNPLIVPNTDHNPKNLNSWAKKTDFVLDYSGEAGSSESEKGSSSSPEIEKDSIVGRIEHDKDIEIQPAKTRCCPWLKCLGKKCKWKTKLNQKLHLLFQKLVTTQENYVHGLRKLGEAGTSGSEKFEPFHHRGRGSSSSPKIEIDPTRGVEIQPASQSQAGVLEENVRKENEPVLPLNGDGERKVGLRGNGVNVNGNGVAPVTEEKDEENVVHGDGEVKVNVFPEGVEFGDGGWKGPSDLKCGLKENPGLVSLIYYGLQHYISLAGSLVLIPLVMVPVMGGTDKDTATVISTMLFLSGITTILHSYFGTRLPLVQGSSFVYLAPALVIINAQEYRNLTEHKFRHIMRELQGAIIVGSIFQCILGFSGLMSILLRLINPVVVAPTVAAVGLAFFSYGFPQAGICLEITVPQIALVLLFTLHLRGISISGRHLFRIYAVPLSATITWIFASLLTAGGVYNYKECNPNVPSSNILTDACRKHAYTMKHCRADVSDALSTAAWWGIPIFHFRTSIIMVIVSLVASVDSVGTYRTTSLQVNSRPPTPGVVSRGIALEGFCSILAGLWGSGTGSTTLTENMHTINITKVASRRVVELGAVFLILFSFVGKVGALLASIPQALAAAILCFMWALTVALGLSTLQYASFRNMTIVGVALFLGMSIPSYFQQYQPESSLILPSYLVPYAAASSGPFHSGLKQLDFAINALMSMNMVVTLLVAFLLDNTVPGSKQERGVYTWSRAEDIAADASLQSEYSLPKKLAWCCCWLK*