AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1172350

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1172350 MtrunA17_Chr5g0412181 94.745 666 14 4 129 775 38 701 0.0 1264
Msa1172350 MtrunA17_Chr5g0412181 53.425 73 18 2 19 82 12 77 3.57e-11 67.0
Msa1172350 MtrunA17_Chr8g0367361 71.114 682 140 9 147 775 95 772 0.0 946
Msa1172350 MtrunA17_Chr2g0320981 53.162 585 246 5 218 775 99 682 0.0 607
Msa1172350 MtrunA17_Chr4g0027121 55.696 553 230 5 238 775 138 690 0.0 607
Msa1172350 MtrunA17_Chr2g0332871 49.522 523 217 5 266 775 159 647 8.49e-173 511
Msa1172350 MtrunA17_Chr8g0379171 36.226 530 291 7 253 767 20 517 1.39e-102 325
Msa1172350 MtrunA17_Chr3g0119521 36.654 532 289 8 252 767 14 513 5.61e-102 324
Msa1172350 MtrunA17_Chr2g0284061 34.411 526 298 6 257 767 24 517 2.05e-97 312
Msa1172350 MtrunA17_Chr4g0059331 34.556 518 290 6 267 767 40 525 1.76e-96 310
Msa1172350 MtrunA17_Chr3g0117941 34.942 518 288 6 267 767 40 525 2.44e-96 309
Msa1172350 MtrunA17_Chr8g0364611 35.328 518 286 7 267 767 41 526 1.53e-95 307
Msa1172350 MtrunA17_Chr5g0414131 34.297 519 291 6 267 767 45 531 2.34e-94 304
Msa1172350 MtrunA17_Chr1g0207021 31.391 532 314 8 253 767 23 520 2.34e-81 270
Msa1172350 MtrunA17_Chr3g0134911 32.710 535 299 13 270 767 68 578 2.66e-81 271
Msa1172350 MtrunA17_Chr1g0154001 32.083 533 311 7 252 767 42 540 1.04e-79 266
Msa1172350 MtrunA17_Chr5g0405471 32.463 536 283 11 270 767 61 555 3.21e-74 251
Msa1172350 MtrunA17_Chr5g0412191 79.279 111 6 2 1 94 1 111 1.02e-52 178
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1172350 AT4G38050.1 71.349 541 140 3 247 772 169 709 0.0 766
Msa1172350 AT2G27810.1 55.351 598 240 9 193 775 120 705 0.0 595
Msa1172350 AT2G27810.4 53.376 622 239 10 193 775 120 729 0.0 585
Msa1172350 AT2G27810.2 56.695 478 175 6 214 661 114 589 6.08e-161 479
Msa1172350 AT2G27810.3 57.241 435 164 7 193 617 120 542 1.43e-141 428
Msa1172350 AT1G60030.1 37.838 518 273 6 267 767 46 531 4.01e-108 341
Msa1172350 AT2G05760.1 37.218 532 286 7 252 767 14 513 1.10e-101 323
Msa1172350 AT2G34190.1 34.717 530 299 7 253 767 20 517 1.57e-98 315
Msa1172350 AT5G62890.1 35.521 518 285 6 267 767 40 525 3.67e-98 315
Msa1172350 AT5G62890.2 35.521 518 285 6 267 767 40 525 3.67e-98 315
Msa1172350 AT5G62890.3 35.521 518 285 6 267 767 40 525 3.67e-98 315
Msa1172350 AT5G49990.2 34.709 533 299 8 252 767 21 521 1.20e-95 308
Msa1172350 AT5G49990.3 34.709 533 299 8 252 767 21 521 1.20e-95 308
Msa1172350 AT5G49990.1 34.709 533 299 8 252 767 21 521 1.20e-95 308
Msa1172350 AT5G49990.4 34.709 533 299 8 252 767 21 521 1.20e-95 308
Msa1172350 AT1G10540.1 34.270 534 295 10 257 768 34 533 8.09e-93 301
Msa1172350 AT1G49960.1 35.328 518 286 7 267 767 34 519 6.40e-88 287
Msa1172350 AT5G62890.4 36.504 452 242 5 267 705 40 459 7.25e-88 286
Msa1172350 AT2G26510.1 33.396 533 303 8 253 767 44 542 6.64e-77 259
Msa1172350 AT1G65550.1 31.262 531 307 9 261 767 38 534 3.45e-75 254
Msa1172350 AT1G10540.2 34.795 365 203 6 267 616 44 388 4.95e-64 219
Msa1172350 AT2G26510.3 35.013 377 213 5 252 616 43 399 9.01e-55 194
Msa1172350 AT5G25420.1 30.266 413 205 7 270 677 59 393 1.33e-52 189
Msa1172350 AT2G26510.2 34.890 364 205 5 252 603 43 386 2.29e-51 186

Find 219 sgRNAs with CRISPR-Local

Find 449 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGACATGACTTACTTGTTTA+AGG 0.077021 8_1:-2300281 None:intergenic
TAGTATATTGGCTGGTCTTT+GGG 0.186238 8_1:+2299713 Msa1172350:CDS
CTGCCCTTGGCTCAAGTGTT+TGG 0.199112 8_1:+2294554 Msa1172350:CDS
TCTACAATGTTGTTTCTTTC+CGG 0.199188 8_1:+2297809 Msa1172350:CDS
TTTCCAGAAGGAGTTGAATT+TGG 0.226139 8_1:+2295971 Msa1172350:CDS
TATTACTAGCAACATTAAAT+TGG 0.243999 8_1:+2300733 Msa1172350:three_prime_UTR
GCAGTATCTCTTATCTATTA+TGG 0.244533 8_1:+2297595 Msa1172350:intron
GTAGTATATTGGCTGGTCTT+TGG 0.248801 8_1:+2299712 Msa1172350:CDS
GAAGTCCTGAAGTGGAAAAT+AGG 0.249412 8_1:-2299451 None:intergenic
TGCTTCCATTCCACAGGCCT+TGG 0.253689 8_1:+2300029 Msa1172350:CDS
TTGGCTGGTCTTTGGGGTTC+AGG 0.262793 8_1:+2299720 Msa1172350:CDS
TCTCCAAATTCAACTCCTTC+TGG 0.279848 8_1:-2295974 None:intergenic
CAACACCATGCAAGTTTCTT+TGG 0.280482 8_1:-2300613 None:intergenic
CCTCGTTCTTGTTTACTTCC+CGG 0.284283 8_1:-2300523 None:intergenic
CGTTCATGGGCTAAGAAAAC+TGG 0.287394 8_1:+2295584 Msa1172350:CDS
TTCAATATTCCAATGTATCT+TGG 0.297916 8_1:+2298195 Msa1172350:CDS
GGAACAAAAGGTGCAACTTT+TGG 0.299363 8_1:-2295533 None:intergenic
TGCCCTTGGCTCAAGTGTTT+GGG 0.307572 8_1:+2294555 Msa1172350:CDS
CACTTCTGACATTAACAAAA+AGG 0.313427 8_1:+2300664 Msa1172350:three_prime_UTR
ACCGTTGGCGCAACCACAAC+AGG 0.317314 8_1:-2298774 None:intergenic
TGACACTATGACCATGATTA+TGG 0.319148 8_1:-2299473 None:intergenic
CGCATAAGGAACAAGATAAC+TGG 0.321940 8_1:-2300229 None:intergenic
TTGCTGTTGGTTGAAGTGAT+TGG 0.324960 8_1:+2300633 Msa1172350:exon
CAATGTATCTTGGGATTTAG+TGG 0.331523 8_1:+2298205 Msa1172350:CDS
TTGATCCTCTTCTCATTTGT+AGG 0.332106 8_1:+2299834 Msa1172350:CDS
GTGGGCTCTTACCGTGGCAT+TGG 0.337955 8_1:+2300074 Msa1172350:CDS
CTTAAAGAAAATCCGGGTTT+AGG 0.338465 8_1:+2296034 Msa1172350:CDS
ATTGCAGATCATGAAGAAAA+AGG 0.345314 8_1:+2300688 Msa1172350:three_prime_UTR
GTTGGATCTATCTCTATCTT+AGG 0.353421 8_1:-2295698 None:intergenic
TGCTGTTGGTTGAAGTGATT+GGG 0.353798 8_1:+2300634 Msa1172350:exon
ACTATACTGCACTCTTACTT+TGG 0.354542 8_1:+2297839 Msa1172350:CDS
GGTCTTTGGGGTTCAGGTAC+CGG 0.358878 8_1:+2299726 Msa1172350:CDS
GGAGGGTTTCTGTAGTATAT+TGG 0.361128 8_1:+2299701 Msa1172350:CDS
ATGACTGGTACCATGACTAA+TGG 0.362103 8_1:-2297661 None:intergenic
ATCAGCCCTGCAATGCTTCA+TGG 0.374512 8_1:-2299365 None:intergenic
CATATACCATGAAGCATTGC+AGG 0.376910 8_1:+2299359 Msa1172350:CDS
GCCCATGAACGTAATTCTCT+TGG 0.376998 8_1:-2295572 None:intergenic
TCAATATTCCAATGTATCTT+GGG 0.377573 8_1:+2298196 Msa1172350:CDS
TTTGGATTGTGATCAGTGTT+TGG 0.379217 8_1:-2294330 None:intergenic
CAAAAGCCCGTTGCTGCCCT+TGG 0.381192 8_1:+2294541 Msa1172350:CDS
CAGTGTAACCACCATGTTCA+TGG 0.386977 8_1:-2300470 None:intergenic
ATAGAGAAAGATTCAATTGT+GGG 0.389710 8_1:+2294480 Msa1172350:CDS
TCAAGTGGGCCATTCCATTC+AGG 0.393498 8_1:+2300258 Msa1172350:CDS
CTTCAAGGTGCTATAATTGT+TGG 0.396001 8_1:+2298172 Msa1172350:CDS
AGGCTGGTATTGTTGAAAAT+AGG 0.398406 8_1:-2300187 None:intergenic
TGGGCTCTTACCGTGGCATT+GGG 0.399078 8_1:+2300075 Msa1172350:CDS
GAGAGGAAAGTTGGTTTAAG+AGG 0.401648 8_1:+2295824 Msa1172350:CDS
ATTCCTCGGCTCACAACTCC+TGG 0.404762 8_1:-2299672 None:intergenic
ACAGTCACAAGCTGGTGTTT+TGG 0.405092 8_1:+2295748 Msa1172350:CDS
TTACTTGTTTAAGGCCTGAA+TGG 0.405824 8_1:-2300272 None:intergenic
GTGTGGACTTAAAGAAAATC+CGG 0.409950 8_1:+2296027 Msa1172350:CDS
ACTGTTGGTGGCATTTCTAC+TGG 0.415195 8_1:+2300489 Msa1172350:CDS
CGTCACTTCAAGTTAATTCA+AGG 0.416440 8_1:+2299640 Msa1172350:CDS
CGTTGAGCGCAACAATAACT+TGG 0.418430 8_1:+2299233 Msa1172350:CDS
TTCTGTCAAAGTCGTTGAAC+CGG 0.418532 8_1:-2299745 None:intergenic
CCCTGTTGTGGTTGCGCCAA+CGG 0.418704 8_1:+2298773 Msa1172350:CDS
ATGTTTGAACTCGGTACATT+GGG 0.420675 8_1:-2299310 None:intergenic
CCACTTGACGCTGCCGCATA+AGG 0.423290 8_1:-2300243 None:intergenic
ACCATGCAAGTTTCTTTGGC+AGG 0.423585 8_1:-2300609 None:intergenic
CACTGTTCCACAAATTGCAT+TGG 0.423678 8_1:+2298860 Msa1172350:CDS
AAACAACATTGTAGAAATTA+CGG 0.423737 8_1:-2297801 None:intergenic
TCACCATTCAAAGGCAAAAC+AGG 0.425968 8_1:-2295797 None:intergenic
ATGGTCAATCAGCTAGCTTC+AGG 0.426770 8_1:+2300115 Msa1172350:intron
CCCTTGCACTAAAGGAAGTC+GGG 0.431146 8_1:-2297864 None:intergenic
TGAGTAATCAAGTACAAAAT+CGG 0.431173 8_1:-2294379 None:intergenic
GGTTTAGCGTTCTTCAGTTA+CGG 0.431955 8_1:+2298807 Msa1172350:CDS
TTATAAATGCTCAAGAATAT+CGG 0.433551 8_1:+2297921 Msa1172350:CDS
AAGTCCTGAAGTGGAAAATA+GGG 0.433703 8_1:-2299450 None:intergenic
TGACTGGTACCATGACTAAT+GGG 0.437934 8_1:-2297660 None:intergenic
CCCACAAGCTGGTATTTGCT+TGG 0.438042 8_1:+2298833 Msa1172350:CDS
AATAGAACCAATGCAATTTG+TGG 0.438702 8_1:-2298867 None:intergenic
ACTGGTTGCTTCTGTTGATT+CGG 0.443347 8_1:+2299495 Msa1172350:CDS
AACGAGCTCCCTTGCACTAA+AGG 0.444458 8_1:-2297872 None:intergenic
CTTGAGCCAAGGGCAGCAAC+GGG 0.446171 8_1:-2294547 None:intergenic
CCCATGAACGTAATTCTCTT+GGG 0.446265 8_1:-2295571 None:intergenic
TCTGATTATTCAGGTGAAGC+AGG 0.448658 8_1:+2295614 Msa1172350:intron
CTCGTTCTTGTTTACTTCCC+GGG 0.450845 8_1:-2300522 None:intergenic
GTCGGCGTTGCATTGTTCCT+TGG 0.453402 8_1:+2300150 Msa1172350:CDS
TCTCCTTGCTTCCATTCCAC+AGG 0.455637 8_1:+2300023 Msa1172350:CDS
AATCATTGAACAAAAGAAGT+TGG 0.455882 8_1:+2294292 Msa1172350:CDS
CAGCATAAATTCGAAATAAG+TGG 0.456937 8_1:-2299102 None:intergenic
GCGCCAACGGTTGCTGCTGT+AGG 0.457783 8_1:+2298786 Msa1172350:CDS
CCTCTTCCTCTATGATGAAA+AGG 0.458047 8_1:-2295662 None:intergenic
GGCCTATCGACTTTACAGTA+TGG 0.462728 8_1:+2300096 Msa1172350:CDS
CTTACAGCACTATATATCAT+TGG 0.465141 8_1:+2297618 Msa1172350:CDS
ATTGAATCTTTCTCTATCTC+CGG 0.465172 8_1:-2294474 None:intergenic
CTCACAACTCCTGGAGTTGG+AGG 0.475666 8_1:-2299663 None:intergenic
CCAAGCAAATACCAGCTTGT+GGG 0.476150 8_1:-2298833 None:intergenic
GGTGATGGTGAGAGGAAAGT+TGG 0.476679 8_1:+2295815 Msa1172350:CDS
ATTAGTCATGGTACCAGTCA+TGG 0.477474 8_1:+2297663 Msa1172350:CDS
CTTCGAGGAATATCTATCTC+TGG 0.481735 8_1:+2299076 Msa1172350:CDS
TCATCCTTCTCCTCAGTCAC+AGG 0.482513 8_1:-2295905 None:intergenic
TTCAGGAACATGACAATTGT+CGG 0.483776 8_1:+2300132 Msa1172350:CDS
AAGAGGGTCTTCATCTTCTC+CGG 0.485493 8_1:+2294455 Msa1172350:intron
ACATGGTGATGGTGAAGTTA+AGG 0.485541 8_1:+2295940 Msa1172350:CDS
CCTTATGCGGCAGCGTCAAG+TGG 0.488646 8_1:+2300243 Msa1172350:CDS
ACTTGAGCCAAGGGCAGCAA+CGG 0.489073 8_1:-2294548 None:intergenic
AGTAGGAGAGTAGTGGAACT+TGG 0.490518 8_1:+2299801 Msa1172350:CDS
GGTTTCTGTAGTATATTGGC+TGG 0.490990 8_1:+2299705 Msa1172350:CDS
AGAAATTTAGACACATAATG+AGG 0.491899 8_1:+2298146 Msa1172350:intron
AGAGGAAAGTTGGTTTAAGA+GGG 0.491986 8_1:+2295825 Msa1172350:CDS
CGGCTCACAACTCCTGGAGT+TGG 0.492387 8_1:-2299666 None:intergenic
ACCCAAGAGAATTACGTTCA+TGG 0.493944 8_1:+2295570 Msa1172350:CDS
AATGTTTGAACTCGGTACAT+TGG 0.497178 8_1:-2299311 None:intergenic
CTCGTTTGTGTATTTAGCAC+CGG 0.498548 8_1:+2297889 Msa1172350:CDS
TGTTTGTTGAAGCATCTTCG+AGG 0.502276 8_1:+2299061 Msa1172350:intron
AATCATGGTCATAGTGTCAC+TGG 0.503235 8_1:+2299477 Msa1172350:CDS
CGCTCTTATGTCCATGAACA+TGG 0.503641 8_1:+2300459 Msa1172350:CDS
CTTGTGACTGTGAAGCTGGT+TGG 0.506979 8_1:-2295736 None:intergenic
ATTGGTTCTATTATTCACTC+TGG 0.507159 8_1:+2298878 Msa1172350:CDS
ATTTGGAGATGGTGGATGGA+AGG 0.508885 8_1:+2295988 Msa1172350:CDS
TTGAATTTGGAGATGGTGGA+TGG 0.508948 8_1:+2295984 Msa1172350:CDS
TGCTATACTGTGTTTCATGT+GGG 0.512633 8_1:+2300056 Msa1172350:CDS
CCAGCTTGTGACTGTGAAGC+TGG 0.516672 8_1:-2295740 None:intergenic
AATTCAAGGCCTCCAACTCC+AGG 0.519913 8_1:+2299654 Msa1172350:CDS
AAAGTTGGTTTAAGAGGGAA+TGG 0.522061 8_1:+2295830 Msa1172350:CDS
ATGCATTGTCTACTGCTGCA+TGG 0.523315 8_1:+2299395 Msa1172350:CDS
CTCCCAAACACTTGAGCCAA+GGG 0.523799 8_1:-2294557 None:intergenic
GGTGTTAATGTGAATGGTAA+TGG 0.523853 8_1:+2295851 Msa1172350:CDS
CAGCACTATATATCATTGGC+TGG 0.524188 8_1:+2297622 Msa1172350:CDS
TGGATCTCAACACCCCTAGT+TGG 0.524426 8_1:-2295716 None:intergenic
ACATCTGTTCCACCCATGAC+TGG 0.524518 8_1:-2297676 None:intergenic
CTGCTATACTGTGTTTCATG+TGG 0.524664 8_1:+2300055 Msa1172350:CDS
GCATTTATAATGACTAATGC+CGG 0.525117 8_1:-2297908 None:intergenic
TGCATTGTCTACTGCTGCAT+GGG 0.526144 8_1:+2299396 Msa1172350:CDS
CTTCAGGACTTCCATAATCA+TGG 0.529196 8_1:+2299462 Msa1172350:CDS
CTACTGGACAACACTGTCCC+GGG 0.530706 8_1:+2300505 Msa1172350:CDS
GGAGTTGAATTTGGAGATGG+TGG 0.531975 8_1:+2295980 Msa1172350:CDS
AGATAGAGATAGATCCAACT+AGG 0.536250 8_1:+2295702 Msa1172350:CDS
AGTATATTGGCTGGTCTTTG+GGG 0.537211 8_1:+2299714 Msa1172350:CDS
TTGTTGAAAATAGGATGGAA+TGG 0.537365 8_1:-2300178 None:intergenic
TCTACTGGACAACACTGTCC+CGG 0.540937 8_1:+2300504 Msa1172350:CDS
TGTGACTGAGGAGAAGGATG+AGG 0.542229 8_1:+2295907 Msa1172350:CDS
AACCCTCCAATGCAATTCCT+CGG 0.543888 8_1:-2299686 None:intergenic
TCAGGTGAAGCAGGGACTAG+TGG 0.544152 8_1:+2295623 Msa1172350:intron
AGCCGAGGAATTGCATTGGA+GGG 0.544530 8_1:+2299684 Msa1172350:CDS
CAAGTTATTGTTGCGCTCAA+CGG 0.544576 8_1:-2299232 None:intergenic
CCATGCAAGTTTCTTTGGCA+GGG 0.544812 8_1:-2300608 None:intergenic
TTTCATGTGGGCTCTTACCG+TGG 0.545169 8_1:+2300068 Msa1172350:CDS
CACATAATGAGGGAACTTCA+AGG 0.546339 8_1:+2298157 Msa1172350:CDS
CCCAAGAGAATTACGTTCAT+GGG 0.549316 8_1:+2295571 Msa1172350:CDS
ACCCGACTTCCTTTAGTGCA+AGG 0.549323 8_1:+2297863 Msa1172350:CDS
CTGATTATTCAGGTGAAGCA+GGG 0.551463 8_1:+2295615 Msa1172350:intron
TCCCTTGCACTAAAGGAAGT+CGG 0.553144 8_1:-2297865 None:intergenic
AAGGTTAATGTGTTTCCAGA+AGG 0.553353 8_1:+2295959 Msa1172350:CDS
CCCGACTTCCTTTAGTGCAA+GGG 0.555144 8_1:+2297864 Msa1172350:CDS
GTGCAGTATAGTTGTGATGC+CGG 0.555342 8_1:-2297828 None:intergenic
TGTTTAAGGCCTGAATGGAA+TGG 0.558091 8_1:-2300267 None:intergenic
CACTAAATCCCAAGATACAT+TGG 0.559536 8_1:-2298204 None:intergenic
AGTCCACACTTCAAATCAGA+TGG 0.560565 8_1:-2296013 None:intergenic
TTTGGAGATGGTGGATGGAA+GGG 0.560727 8_1:+2295989 Msa1172350:CDS
GGGAATGGTGTTAATGTGAA+TGG 0.562700 8_1:+2295845 Msa1172350:CDS
GATAGAGAAAGATTCAATTG+TGG 0.562887 8_1:+2294479 Msa1172350:CDS
AACTTGCATGGTGTTGCTGT+TGG 0.563081 8_1:+2300620 Msa1172350:CDS
CTCTCACCATCACCATTCAA+AGG 0.564623 8_1:-2295806 None:intergenic
TCCAAGCAAATACCAGCTTG+TGG 0.564734 8_1:-2298834 None:intergenic
TGTATTAATCCCATTAGTCA+TGG 0.565064 8_1:+2297651 Msa1172350:CDS
GAGCCGAGGAATTGCATTGG+AGG 0.566036 8_1:+2299683 Msa1172350:CDS
TGCAGTTGCTCCTGTGACTG+AGG 0.566128 8_1:+2295895 Msa1172350:intron
TGTGGACTTAAAGAAAATCC+GGG 0.567139 8_1:+2296028 Msa1172350:CDS
GATAGAGATAGATCCAACTA+GGG 0.567963 8_1:+2295703 Msa1172350:CDS
AGCAGCCAAGGCCTGTGGAA+TGG 0.570357 8_1:-2300034 None:intergenic
AGTTACGGTTTCCCACAAGC+TGG 0.571863 8_1:+2298822 Msa1172350:CDS
TGCTCCTGTGACTGAGGAGA+AGG 0.572209 8_1:+2295901 Msa1172350:CDS
TGTGAGCCGAGGAATTGCAT+TGG 0.574624 8_1:+2299680 Msa1172350:CDS
CAGTTATCTTGTTCCTTATG+CGG 0.574780 8_1:+2300230 Msa1172350:CDS
TTAGTCATGGTACCAGTCAT+GGG 0.575195 8_1:+2297664 Msa1172350:CDS
ACACAGTATAGCAGCAGCCA+AGG 0.577141 8_1:-2300046 None:intergenic
AGGATGGAATGGACATTCCA+AGG 0.577433 8_1:-2300167 None:intergenic
GCTTGATGTCTATCCTACTC+AGG 0.579268 8_1:+2298227 Msa1172350:CDS
GGTGGCAAGTAGGAGAGTAG+TGG 0.580576 8_1:+2299794 Msa1172350:CDS
GAAGGAGTTGAATTTGGAGA+TGG 0.582600 8_1:+2295977 Msa1172350:CDS
CTTATGCGGCAGCGTCAAGT+GGG 0.584023 8_1:+2300244 Msa1172350:CDS
AGATTGCAGCGAGGCATCCG+CGG 0.585119 8_1:-2300578 None:intergenic
TGGTATTGTTGAAAATAGGA+TGG 0.586767 8_1:-2300183 None:intergenic
TCAGTGTTTGGAACAATGAG+AGG 0.587826 8_1:-2294318 None:intergenic
ACATCACAAAGGTGGCAAGT+AGG 0.589236 8_1:+2299784 Msa1172350:CDS
ACTCCCAAACACTTGAGCCA+AGG 0.591845 8_1:-2294558 None:intergenic
CTTTACCTACAAATGAGAAG+AGG 0.593632 8_1:-2299839 None:intergenic
GTATAAGACTTGACTCAGGC+TGG 0.598503 8_1:-2300203 None:intergenic
TAGAGAAAGATTCAATTGTG+GGG 0.599039 8_1:+2294481 Msa1172350:CDS
CCAGCTTCACAGTCACAAGC+TGG 0.599990 8_1:+2295740 Msa1172350:CDS
AAACCTACAGCAGCAACCGT+TGG 0.601364 8_1:-2298789 None:intergenic
GTTCATGGGCTAAGAAAACT+GGG 0.602879 8_1:+2295585 Msa1172350:CDS
TAGGTTAATCAACCCTGTTG+TGG 0.603357 8_1:+2298761 Msa1172350:intron
TGATTATGGAAGTCCTGAAG+TGG 0.603711 8_1:-2299459 None:intergenic
GAAATTTAGACACATAATGA+GGG 0.604178 8_1:+2298147 Msa1172350:intron
GGACCATCTGATTTGAAGTG+TGG 0.604307 8_1:+2296010 Msa1172350:CDS
CACAATTAACATCACAAAGG+TGG 0.604324 8_1:+2299776 Msa1172350:CDS
AGGCCTGTGGAATGGAAGCA+AGG 0.607804 8_1:-2300026 None:intergenic
CTTTGAATGGTGATGGTGAG+AGG 0.613652 8_1:+2295807 Msa1172350:CDS
AAGAACGAGGAGTGTATACA+TGG 0.615795 8_1:+2300536 Msa1172350:CDS
AGTCGATAGGCCCAATGCCA+CGG 0.617446 8_1:-2300085 None:intergenic
CCCTGCCAAAGAAACTTGCA+TGG 0.625130 8_1:+2300608 Msa1172350:CDS
CATGGTGGTTACACTGTTGG+TGG 0.626703 8_1:+2300477 Msa1172350:CDS
GAACATGGTGGTTACACTGT+TGG 0.627072 8_1:+2300474 Msa1172350:CDS
TGCAGCAGTAGACAATGCAT+CGG 0.629989 8_1:-2299392 None:intergenic
GTTAATGTGAATGGTAATGG+TGG 0.636549 8_1:+2295854 Msa1172350:CDS
GACCATACTGTAAAGTCGAT+AGG 0.637354 8_1:-2300098 None:intergenic
GCATAAGGAACAAGATAACT+GGG 0.640702 8_1:-2300228 None:intergenic
GATGAGGAGAATGTGATACA+TGG 0.641286 8_1:+2295923 Msa1172350:CDS
TTGATTACTCAGGAGAAGCA+TGG 0.643308 8_1:+2294391 Msa1172350:CDS
ATAGCAGCAGCCAAGGCCTG+TGG 0.643514 8_1:-2300039 None:intergenic
AAAACAAACTAACCTAAACC+CGG 0.645422 8_1:-2296046 None:intergenic
AGAAAGATTCAATTGTGGGG+AGG 0.651542 8_1:+2294484 Msa1172350:CDS
GGCAGTATAAGACTTGACTC+AGG 0.653391 8_1:-2300207 None:intergenic
TCAGTAAGAATGTTTGAACT+CGG 0.663142 8_1:-2299319 None:intergenic
GTCATGGTACCAGTCATGGG+TGG 0.663447 8_1:+2297667 Msa1172350:CDS
ATATACCATGAAGCATTGCA+GGG 0.667424 8_1:+2299360 Msa1172350:CDS
ACTCCAGGAGTTGTGAGCCG+AGG 0.668659 8_1:+2299669 Msa1172350:CDS
GAGAATGTGATACATGGTGA+TGG 0.674141 8_1:+2295929 Msa1172350:CDS
CCGTTGGCGCAACCACAACA+GGG 0.681677 8_1:-2298773 None:intergenic
CCGGGAAGTAAACAAGAACG+AGG 0.685706 8_1:+2300523 Msa1172350:CDS
GGGGAGGATAGAACATGACA+AGG 0.704355 8_1:+2294500 Msa1172350:CDS
GAGAGCTGAAGACATTGCCG+CGG 0.710630 8_1:+2300561 Msa1172350:CDS
GCACACAATTAACATCACAA+AGG 0.716995 8_1:+2299773 Msa1172350:CDS
ATAGAGATAGATCCAACTAG+GGG 0.726766 8_1:+2295704 Msa1172350:CDS
GGAATATTCAGATTGCAGCG+AGG 0.745841 8_1:-2300587 None:intergenic
TCTTATGTCCATGAACATGG+TGG 0.757467 8_1:+2300462 Msa1172350:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATAAAAATAATAATAAT+AGG - chr8_1:2298498-2298517 None:intergenic 0.0%
!! AAAAAATACATAACAAATAA+AGG + chr8_1:2294945-2294964 Msa1172350:intron 10.0%
!! AACATAAAAAATAGTTATAT+CGG + chr8_1:2296842-2296861 Msa1172350:intron 10.0%
!!! AAAATGAATTATTACTTTTT+GGG - chr8_1:2297550-2297569 None:intergenic 10.0%
!!! AAAAATGAATTATTACTTTT+TGG - chr8_1:2297551-2297570 None:intergenic 10.0%
!! AAAATAATAATAATAGGAAA+AGG - chr8_1:2298492-2298511 None:intergenic 10.0%
!! TTAGTTAGAAATTAGATTTA+TGG + chr8_1:2294611-2294630 Msa1172350:intron 15.0%
!! TATAATACAAAAACATAACA+TGG - chr8_1:2294676-2294695 None:intergenic 15.0%
!!! TATTTTGTTAGTTTAATTCA+TGG - chr8_1:2294895-2294914 None:intergenic 15.0%
!!! ATTTTGAATTATGTTTCATA+TGG + chr8_1:2296091-2296110 Msa1172350:intron 15.0%
!!! CAATATGTTATATTTTAGTT+TGG + chr8_1:2296135-2296154 Msa1172350:intron 15.0%
!!! TTTTATGAACATTTGAATTT+TGG + chr8_1:2296228-2296247 Msa1172350:intron 15.0%
!! ACATAAAAAATAGTTATATC+GGG + chr8_1:2296843-2296862 Msa1172350:intron 15.0%
!!! TTTGTTTTAATCTAAAAAAC+AGG + chr8_1:2297170-2297189 Msa1172350:intron 15.0%
!!! ATTTTTTAAAAGAAAAATGC+TGG - chr8_1:2297401-2297420 None:intergenic 15.0%
!! TTACAAATCACATTAAAATT+TGG + chr8_1:2298065-2298084 Msa1172350:intron 15.0%
!! AATTACATTTAAATATTTGC+AGG + chr8_1:2299207-2299226 Msa1172350:intron 15.0%
!!! ATCATATTTACATTTTTAGA+TGG + chr8_1:2299523-2299542 Msa1172350:intron 15.0%
!! ATAATATAATTCTGCAATTA+TGG - chr8_1:2299888-2299907 None:intergenic 15.0%
!! ATCCAAAAAACTTAAATTCA+TGG + chr8_1:2294346-2294365 Msa1172350:CDS 20.0%
!! TCCAAAAAACTTAAATTCAT+GGG + chr8_1:2294347-2294366 Msa1172350:CDS 20.0%
!! TTAGAAATTAGATTTATGGT+TGG + chr8_1:2294615-2294634 Msa1172350:intron 20.0%
!! TAGAAATTAGATTTATGGTT+GGG + chr8_1:2294616-2294635 Msa1172350:intron 20.0%
!!! GAAAAAAAAATAAGTCTTGT+TGG - chr8_1:2294833-2294852 None:intergenic 20.0%
!!! AAAAAGAGAAATGATGTTTT+GGG - chr8_1:2295241-2295260 None:intergenic 20.0%
!!! ATCTTGTTATAGAATAGATT+AGG + chr8_1:2296324-2296343 Msa1172350:intron 20.0%
!! AAATGAGAAGATAATCAAAT+AGG + chr8_1:2297421-2297440 Msa1172350:intron 20.0%
!! ATGATATGTATATAGAAACT+GGG - chr8_1:2297460-2297479 None:intergenic 20.0%
!! AATGATATGTATATAGAAAC+TGG - chr8_1:2297461-2297480 None:intergenic 20.0%
!! AATTAACATGATTATGTTCT+TGG + chr8_1:2297517-2297536 Msa1172350:intron 20.0%
!! AAACAACATTGTAGAAATTA+CGG - chr8_1:2297804-2297823 None:intergenic 20.0%
!! TTATAAATGCTCAAGAATAT+CGG + chr8_1:2297921-2297940 Msa1172350:CDS 20.0%
!!! ATTTTAATGTGATTTGTAAC+AGG - chr8_1:2298064-2298083 None:intergenic 20.0%
!! AAATATGCAGGATTTAATAA+GGG - chr8_1:2298125-2298144 None:intergenic 20.0%
!! GGATATAAATAATTAATCCT+AGG - chr8_1:2298471-2298490 None:intergenic 20.0%
!!! ATTGAACTTTTATCAATAAG+AGG + chr8_1:2298694-2298713 Msa1172350:intron 20.0%
!!! TCATAAGTGTTTGTTATTTT+AGG - chr8_1:2299188-2299207 None:intergenic 20.0%
!! AAATATTTGAACTTCAATTC+AGG - chr8_1:2299935-2299954 None:intergenic 20.0%
!! GTTCAAATATTTCTTTATAC+AGG + chr8_1:2299943-2299962 Msa1172350:intron 20.0%
!!! TTTTATTTTTGTAGGAAAAG+TGG + chr8_1:2299996-2300015 Msa1172350:intron 20.0%
!!! TTTATTTTTGTAGGAAAAGT+GGG + chr8_1:2299997-2300016 Msa1172350:intron 20.0%
!!! TTTTAAGTAATACTACAATG+AGG - chr8_1:2300330-2300349 None:intergenic 20.0%
!!! TACTTAAAAACTTGTTTAGA+CGG + chr8_1:2300341-2300360 Msa1172350:intron 20.0%
!! TATTACTAGCAACATTAAAT+TGG + chr8_1:2300733-2300752 Msa1172350:three_prime_UTR 20.0%
! AATCATTGAACAAAAGAAGT+TGG + chr8_1:2294292-2294311 Msa1172350:CDS 25.0%
! TGAGTAATCAAGTACAAAAT+CGG - chr8_1:2294382-2294401 None:intergenic 25.0%
! ATAGAGAAAGATTCAATTGT+GGG + chr8_1:2294480-2294499 Msa1172350:CDS 25.0%
!! ATGGATTGTGTTAAGTATTT+GGG - chr8_1:2294976-2294995 None:intergenic 25.0%
!! TATGGATTGTGTTAAGTATT+TGG - chr8_1:2294977-2294996 None:intergenic 25.0%
!! ACGTCTTTTTCTTTCTAATA+TGG - chr8_1:2294995-2295014 None:intergenic 25.0%
!!! GTGTAAGTTCTAGAAAATAA+GGG - chr8_1:2295031-2295050 None:intergenic 25.0%
!! AAAAGAGAAATGATGTTTTG+GGG - chr8_1:2295240-2295259 None:intergenic 25.0%
!! CAAAAAGAGAAATGATGTTT+TGG - chr8_1:2295242-2295261 None:intergenic 25.0%
!!! CATTTCTCTTTTTGAAGTAA+AGG + chr8_1:2295248-2295267 Msa1172350:intron 25.0%
!!! GAAATTTGAGAGCTTTTTTT+AGG - chr8_1:2295375-2295394 None:intergenic 25.0%
! ATGAAATCAATACAATGTTG+TGG - chr8_1:2295465-2295484 None:intergenic 25.0%
!! TCTTCAAGAAAAAGTGTAAA+TGG + chr8_1:2295496-2295515 Msa1172350:intron 25.0%
!!! TGTTTTCATTGTTTTTCTGT+TGG + chr8_1:2296063-2296082 Msa1172350:intron 25.0%
!!! TGGTTTAACTTGAATTTATG+CGG + chr8_1:2296194-2296213 Msa1172350:intron 25.0%
! TGTTATAGAATAGATTAGGA+AGG + chr8_1:2296328-2296347 Msa1172350:intron 25.0%
! AGAACATATGAATATGAATG+AGG + chr8_1:2296463-2296482 Msa1172350:intron 25.0%
! GAACATATGAATATGAATGA+GGG + chr8_1:2296464-2296483 Msa1172350:intron 25.0%
!! TATAAGATGTCTAGAATTCA+AGG + chr8_1:2296497-2296516 Msa1172350:intron 25.0%
! AGCAAAAATTCTACTTAAAG+GGG - chr8_1:2296570-2296589 None:intergenic 25.0%
! GAGCAAAAATTCTACTTAAA+GGG - chr8_1:2296571-2296590 None:intergenic 25.0%
! TGAGCAAAAATTCTACTTAA+AGG - chr8_1:2296572-2296591 None:intergenic 25.0%
!!! TTTATTTCTAGATAAAGGCT+TGG - chr8_1:2296682-2296701 None:intergenic 25.0%
!!! GAGGATTTATTTCTAGATAA+AGG - chr8_1:2296687-2296706 None:intergenic 25.0%
! CTGATAAAAGCAACTTAATA+AGG + chr8_1:2297323-2297342 Msa1172350:intron 25.0%
! TTTAAAAGAAAAATGCTGGT+TGG - chr8_1:2297397-2297416 None:intergenic 25.0%
!! TTTCTGTTTGTTAATGTAGT+AGG - chr8_1:2297969-2297988 None:intergenic 25.0%
! GAAATATGCAGGATTTAATA+AGG - chr8_1:2298126-2298145 None:intergenic 25.0%
!!! TCTAAATTTCTGAAATATGC+AGG - chr8_1:2298137-2298156 None:intergenic 25.0%
! AGAAATTTAGACACATAATG+AGG + chr8_1:2298146-2298165 Msa1172350:intron 25.0%
! GAAATTTAGACACATAATGA+GGG + chr8_1:2298147-2298166 Msa1172350:intron 25.0%
! TTCAATATTCCAATGTATCT+TGG + chr8_1:2298195-2298214 Msa1172350:CDS 25.0%
! TCAATATTCCAATGTATCTT+GGG + chr8_1:2298196-2298215 Msa1172350:CDS 25.0%
!! AACACGAGAAAAAAATGTTT+TGG - chr8_1:2298290-2298309 None:intergenic 25.0%
!!! ATTTTTTTCTCGTGTTGAAT+TGG + chr8_1:2298294-2298313 Msa1172350:intron 25.0%
!!! GATATTACTCTAGAATATCT+TGG + chr8_1:2298401-2298420 Msa1172350:intron 25.0%
! TTATCTTAAGATCATTTCCT+AGG + chr8_1:2298451-2298470 Msa1172350:intron 25.0%
!!! AGGAAACCATTTTTTTTCTT+CGG - chr8_1:2298534-2298553 None:intergenic 25.0%
! GATACAAAAGACTAGTATTA+GGG - chr8_1:2298562-2298581 None:intergenic 25.0%
! TGATACAAAAGACTAGTATT+AGG - chr8_1:2298563-2298582 None:intergenic 25.0%
! TATTGACAATAAGATGATAC+TGG - chr8_1:2298599-2298618 None:intergenic 25.0%
! AACTATTTACAATTTGTCGT+AGG + chr8_1:2298742-2298761 Msa1172350:intron 25.0%
!! TTATCTGAATAGTTTTCTCA+TGG + chr8_1:2298934-2298953 Msa1172350:intron 25.0%
! CTTGATTTATAAACATGTCA+CGG + chr8_1:2298978-2298997 Msa1172350:intron 25.0%
! AACAAGACAAAAAGAAGAAA+TGG - chr8_1:2299045-2299064 None:intergenic 25.0%
! AGCGTATAATTAAATACAGT+TGG + chr8_1:2300368-2300387 Msa1172350:intron 25.0%
!!! GCCCATGAATTTAAGTTTTT+TGG - chr8_1:2294351-2294370 None:intergenic 30.0%
! GATTTTGTACTTGATTACTC+AGG + chr8_1:2294381-2294400 Msa1172350:CDS 30.0%
!!! TTTGAACTTTTTCAATCGAG+AGG + chr8_1:2294432-2294451 Msa1172350:intron 30.0%
ATTGAATCTTTCTCTATCTC+CGG - chr8_1:2294477-2294496 None:intergenic 30.0%
GATAGAGAAAGATTCAATTG+TGG + chr8_1:2294479-2294498 Msa1172350:CDS 30.0%
TAGAGAAAGATTCAATTGTG+GGG + chr8_1:2294481-2294500 Msa1172350:CDS 30.0%
AAAAAGACGTAAGAAAGAGA+GGG + chr8_1:2295005-2295024 Msa1172350:intron 30.0%
!! CGTGTAAGTTCTAGAAAATA+AGG - chr8_1:2295032-2295051 None:intergenic 30.0%
TAGTTGAAATGTGACATTCA+AGG - chr8_1:2295287-2295306 None:intergenic 30.0%
GAATGTCACATTTCAACTAA+CGG + chr8_1:2295288-2295307 Msa1172350:intron 30.0%
GTTGTGGAATGAATAAAGAT+TGG - chr8_1:2295449-2295468 None:intergenic 30.0%
!!! TAACCAGTTTTTGGAACAAA+AGG - chr8_1:2295548-2295567 None:intergenic 30.0%
! TTTGAACCTTTTCATCATAG+AGG + chr8_1:2295656-2295675 Msa1172350:CDS 30.0%
AAAACAAACTAACCTAAACC+CGG - chr8_1:2296049-2296068 None:intergenic 30.0%
!! TTAGTTTGGAATGCTAGTTT+TGG + chr8_1:2296149-2296168 Msa1172350:intron 30.0%
GGTTTGAATTGAAAGTAGTT+TGG + chr8_1:2296174-2296193 Msa1172350:intron 30.0%
TAAGCAATGTGAATTGAATG+TGG + chr8_1:2296271-2296290 Msa1172350:intron 30.0%
AGGATGACATGTATATTGTT+TGG + chr8_1:2296348-2296367 Msa1172350:intron 30.0%
CATGTATATTGTTTGGATTC+TGG + chr8_1:2296355-2296374 Msa1172350:intron 30.0%
CTAGAACTCAAATCAAGTAA+TGG - chr8_1:2296389-2296408 None:intergenic 30.0%
TGCAAAGAATTCATAAGCAA+TGG - chr8_1:2296437-2296456 None:intergenic 30.0%
TTGTATTTGCATTGTGGATT+CGG + chr8_1:2296818-2296837 Msa1172350:intron 30.0%
CTATATAGACAGGATTCAAA+GGG - chr8_1:2296974-2296993 None:intergenic 30.0%
CTTTGAATCCTGTCTATATA+GGG + chr8_1:2296973-2296992 Msa1172350:intron 30.0%
AAGTAATAGTATTCTCGACT+AGG - chr8_1:2297038-2297057 None:intergenic 30.0%
! ATTATGAAAGTACAGAAGTG+AGG + chr8_1:2297087-2297106 Msa1172350:intron 30.0%
! TTATGAAAGTACAGAAGTGA+GGG + chr8_1:2297088-2297107 Msa1172350:intron 30.0%
ATGATAATTGATCAGAGACA+TGG - chr8_1:2297115-2297134 None:intergenic 30.0%
!! CAACTTGAAAACAGTTTTAG+AGG - chr8_1:2297146-2297165 None:intergenic 30.0%
!!! AAGTTGCTTTTATCAGTGAA+TGG - chr8_1:2297319-2297338 None:intergenic 30.0%
ATAGAAACTGGGAAAAATCA+GGG - chr8_1:2297449-2297468 None:intergenic 30.0%
TATAGAAACTGGGAAAAATC+AGG - chr8_1:2297450-2297469 None:intergenic 30.0%
GCAGTATCTCTTATCTATTA+TGG + chr8_1:2297595-2297614 Msa1172350:intron 30.0%
CTTACAGCACTATATATCAT+TGG + chr8_1:2297618-2297637 Msa1172350:CDS 30.0%
TGTATTAATCCCATTAGTCA+TGG + chr8_1:2297651-2297670 Msa1172350:CDS 30.0%
ATCGACTAGAGAGTAATAAA+TGG - chr8_1:2297721-2297740 None:intergenic 30.0%
TACATTATTCTGATGACAGA+AGG + chr8_1:2297769-2297788 Msa1172350:intron 30.0%
!! TCTACAATGTTGTTTCTTTC+CGG + chr8_1:2297809-2297828 Msa1172350:CDS 30.0%
GCATTTATAATGACTAATGC+CGG - chr8_1:2297911-2297930 None:intergenic 30.0%
CTTAATTCATCAAACACTCA+AGG + chr8_1:2297991-2298010 Msa1172350:intron 30.0%
GAGAATATATTCAAACGAAC+AGG - chr8_1:2298098-2298117 None:intergenic 30.0%
! AAACTTTTTGTTACCTGAGT+AGG - chr8_1:2298243-2298262 None:intergenic 30.0%
!!! AAAATGTTTTGGTGAACACA+AGG - chr8_1:2298279-2298298 None:intergenic 30.0%
TATCATGTGTCTCTTTATCT+CGG - chr8_1:2298345-2298364 None:intergenic 30.0%
!! GATATTCTAGAGTAATATCG+AGG - chr8_1:2298400-2298419 None:intergenic 30.0%
!! AATATCTTGGTTTGTCCATT+AGG + chr8_1:2298414-2298433 Msa1172350:intron 30.0%
!! ATATCTTGGTTTGTCCATTA+GGG + chr8_1:2298415-2298434 Msa1172350:intron 30.0%
!!! ACCATTTTTTTTCTTCGGAA+GGG - chr8_1:2298529-2298548 None:intergenic 30.0%
!!! AACCATTTTTTTTCTTCGGA+AGG - chr8_1:2298530-2298549 None:intergenic 30.0%
AGACTAGTATTAGGGAAATA+AGG - chr8_1:2298554-2298573 None:intergenic 30.0%
AATAGAACCAATGCAATTTG+TGG - chr8_1:2298870-2298889 None:intergenic 30.0%
!! ATTGGTTCTATTATTCACTC+TGG + chr8_1:2298878-2298897 Msa1172350:CDS 30.0%
CAGCATAAATTCGAAATAAG+TGG - chr8_1:2299105-2299124 None:intergenic 30.0%
TCAGTAAGAATGTTTGAACT+CGG - chr8_1:2299322-2299341 None:intergenic 30.0%
AATTCCTTATCCTTTACAGT+GGG + chr8_1:2299423-2299442 Msa1172350:intron 30.0%
TTGTTGAAAATAGGATGGAA+TGG - chr8_1:2300181-2300200 None:intergenic 30.0%
TGGTATTGTTGAAAATAGGA+TGG - chr8_1:2300186-2300205 None:intergenic 30.0%
! AAAATCAAGCTGACAAGTTT+TGG - chr8_1:2300431-2300450 None:intergenic 30.0%
CACTTCTGACATTAACAAAA+AGG + chr8_1:2300664-2300683 Msa1172350:three_prime_UTR 30.0%
ATTGCAGATCATGAAGAAAA+AGG + chr8_1:2300688-2300707 Msa1172350:three_prime_UTR 30.0%
TTTGGATTGTGATCAGTGTT+TGG - chr8_1:2294333-2294352 None:intergenic 35.0%
!! TTTTTCAATCGAGAGGAAGA+GGG + chr8_1:2294439-2294458 Msa1172350:intron 35.0%
GAAAAAGACGTAAGAAAGAG+AGG + chr8_1:2295004-2295023 Msa1172350:intron 35.0%
ATGAGAGAAAATGCATACAG+TGG - chr8_1:2295397-2295416 None:intergenic 35.0%
!! GGGTTTGTTTCTGATTATTC+AGG + chr8_1:2295605-2295624 Msa1172350:intron 35.0%
! CTTTTCATCATAGAGGAAGA+GGG + chr8_1:2295663-2295682 Msa1172350:CDS 35.0%
GTTGGATCTATCTCTATCTT+AGG - chr8_1:2295701-2295720 None:intergenic 35.0%
AGATAGAGATAGATCCAACT+AGG + chr8_1:2295702-2295721 Msa1172350:CDS 35.0%
GATAGAGATAGATCCAACTA+GGG + chr8_1:2295703-2295722 Msa1172350:CDS 35.0%
ATAGAGATAGATCCAACTAG+GGG + chr8_1:2295704-2295723 Msa1172350:CDS 35.0%
! AGAGGAAAGTTGGTTTAAGA+GGG + chr8_1:2295825-2295844 Msa1172350:CDS 35.0%
! AAAGTTGGTTTAAGAGGGAA+TGG + chr8_1:2295830-2295849 Msa1172350:CDS 35.0%
GGTGTTAATGTGAATGGTAA+TGG + chr8_1:2295851-2295870 Msa1172350:CDS 35.0%
!! GTTAATGTGAATGGTAATGG+TGG + chr8_1:2295854-2295873 Msa1172350:CDS 35.0%
AAGGTTAATGTGTTTCCAGA+AGG + chr8_1:2295959-2295978 Msa1172350:CDS 35.0%
TTTCCAGAAGGAGTTGAATT+TGG + chr8_1:2295971-2295990 Msa1172350:CDS 35.0%
GTGTGGACTTAAAGAAAATC+CGG + chr8_1:2296027-2296046 Msa1172350:CDS 35.0%
TGTGGACTTAAAGAAAATCC+GGG + chr8_1:2296028-2296047 Msa1172350:CDS 35.0%
CTTAAAGAAAATCCGGGTTT+AGG + chr8_1:2296034-2296053 Msa1172350:CDS 35.0%
!!! TTTGGAATGCTAGTTTTGGT+TGG + chr8_1:2296153-2296172 Msa1172350:intron 35.0%
TGTGGTTAACTCTGTATGTT+TGG + chr8_1:2296289-2296308 Msa1172350:intron 35.0%
TGGAATGAGCTTATCATGTT+GGG - chr8_1:2296541-2296560 None:intergenic 35.0%
ATGGAATGAGCTTATCATGT+TGG - chr8_1:2296542-2296561 None:intergenic 35.0%
TCTACTTAAAGGGGAAAGAA+TGG - chr8_1:2296561-2296580 None:intergenic 35.0%
! ATTTCTAGATAAAGGCTTGG+AGG - chr8_1:2296679-2296698 None:intergenic 35.0%
AAATACAATTGAGGCTGCAT+CGG - chr8_1:2296806-2296825 None:intergenic 35.0%
CCACAATGCAAATACAATTG+AGG - chr8_1:2296815-2296834 None:intergenic 35.0%
CCTCAATTGTATTTGCATTG+TGG + chr8_1:2296812-2296831 Msa1172350:intron 35.0%
! CCATTATTTGAAACCCTACA+CGG + chr8_1:2296886-2296905 Msa1172350:intron 35.0%
! CATTATTTGAAACCCTACAC+GGG + chr8_1:2296887-2296906 Msa1172350:intron 35.0%
CCTATATAGACAGGATTCAA+AGG - chr8_1:2296975-2296994 None:intergenic 35.0%
CCTTTGAATCCTGTCTATAT+AGG + chr8_1:2296972-2296991 Msa1172350:intron 35.0%
ACTTCTTTCCCTATATAGAC+AGG - chr8_1:2296984-2297003 None:intergenic 35.0%
AAGTTATCTAAGTCGTGTTG+AGG - chr8_1:2297067-2297086 None:intergenic 35.0%
!!! CTTGAAAACAGTTTTAGAGG+TGG - chr8_1:2297143-2297162 None:intergenic 35.0%
TAGAAACTGGGAAAAATCAG+GGG - chr8_1:2297448-2297467 None:intergenic 35.0%
ACTATACTGCACTCTTACTT+TGG + chr8_1:2297839-2297858 Msa1172350:CDS 35.0%
! CTTCAAGGTGCTATAATTGT+TGG + chr8_1:2298172-2298191 Msa1172350:CDS 35.0%
CACTAAATCCCAAGATACAT+TGG - chr8_1:2298207-2298226 None:intergenic 35.0%
CAATGTATCTTGGGATTTAG+TGG + chr8_1:2298205-2298224 Msa1172350:CDS 35.0%
AGATTGAAAACTGACCCTAA+TGG - chr8_1:2298432-2298451 None:intergenic 35.0%
TCCCTTCCGAAGAAAAAAAA+TGG + chr8_1:2298525-2298544 Msa1172350:intron 35.0%
GTTGTGGGACATTAGATAAA+AGG - chr8_1:2298652-2298671 None:intergenic 35.0%
!! ATTGCTTTTGCTGAAGTTGT+GGG - chr8_1:2298667-2298686 None:intergenic 35.0%
ATGTTTGAACTCGGTACATT+GGG - chr8_1:2299313-2299332 None:intergenic 35.0%
AATGTTTGAACTCGGTACAT+TGG - chr8_1:2299314-2299333 None:intergenic 35.0%
!! ATATACCATGAAGCATTGCA+GGG + chr8_1:2299360-2299379 Msa1172350:CDS 35.0%
GAATTCCTTATCCTTTACAG+TGG + chr8_1:2299422-2299441 Msa1172350:intron 35.0%
ATTCCTTATCCTTTACAGTG+GGG + chr8_1:2299424-2299443 Msa1172350:intron 35.0%
AAGTCCTGAAGTGGAAAATA+GGG - chr8_1:2299453-2299472 None:intergenic 35.0%
TGACACTATGACCATGATTA+TGG - chr8_1:2299476-2299495 None:intergenic 35.0%
ATAAGTTCCAACCTGCAAAA+AGG - chr8_1:2299613-2299632 None:intergenic 35.0%
! CGTCACTTCAAGTTAATTCA+AGG + chr8_1:2299640-2299659 Msa1172350:CDS 35.0%
!! TAGTATATTGGCTGGTCTTT+GGG + chr8_1:2299713-2299732 Msa1172350:CDS 35.0%
GCACACAATTAACATCACAA+AGG + chr8_1:2299773-2299792 Msa1172350:CDS 35.0%
CACAATTAACATCACAAAGG+TGG + chr8_1:2299776-2299795 Msa1172350:CDS 35.0%
TTGATCCTCTTCTCATTTGT+AGG + chr8_1:2299834-2299853 Msa1172350:CDS 35.0%
CTTTACCTACAAATGAGAAG+AGG - chr8_1:2299842-2299861 None:intergenic 35.0%
GTAGGTAAAGTAACAACACT+TGG + chr8_1:2299852-2299871 Msa1172350:intron 35.0%
AATTCTGCAATTATGGACGT+TGG - chr8_1:2299881-2299900 None:intergenic 35.0%
TGAACTTCAATTCAGGTGTT+AGG - chr8_1:2299928-2299947 None:intergenic 35.0%
TGCTATACTGTGTTTCATGT+GGG + chr8_1:2300056-2300075 Msa1172350:CDS 35.0%
TTCAGGAACATGACAATTGT+CGG + chr8_1:2300132-2300151 Msa1172350:CDS 35.0%
AGGCTGGTATTGTTGAAAAT+AGG - chr8_1:2300190-2300209 None:intergenic 35.0%
GCATAAGGAACAAGATAACT+GGG - chr8_1:2300231-2300250 None:intergenic 35.0%
CAGTTATCTTGTTCCTTATG+CGG + chr8_1:2300230-2300249 Msa1172350:CDS 35.0%
! TTACTTGTTTAAGGCCTGAA+TGG - chr8_1:2300275-2300294 None:intergenic 35.0%
CGACATGACTTACTTGTTTA+AGG - chr8_1:2300284-2300303 None:intergenic 35.0%
! TCAGTGTTTGGAACAATGAG+AGG - chr8_1:2294321-2294340 None:intergenic 40.0%
TTGATTACTCAGGAGAAGCA+TGG + chr8_1:2294391-2294410 Msa1172350:CDS 40.0%
!!! CTTTTTCAATCGAGAGGAAG+AGG + chr8_1:2294438-2294457 Msa1172350:intron 40.0%
AGAAAGATTCAATTGTGGGG+AGG + chr8_1:2294484-2294503 Msa1172350:CDS 40.0%
AGATCAATGACATCGATGCT+TGG + chr8_1:2294733-2294752 Msa1172350:intron 40.0%
GATCAATGACATCGATGCTT+GGG + chr8_1:2294734-2294753 Msa1172350:intron 40.0%
TCGTAACGTGCAATCAGATT+TGG + chr8_1:2294795-2294814 Msa1172350:intron 40.0%
!! TTTTAGGAAGTGAGAGTGAC+TGG - chr8_1:2295359-2295378 None:intergenic 40.0%
!! GGAACAAAAGGTGCAACTTT+TGG - chr8_1:2295536-2295555 None:intergenic 40.0%
! GCACCTTTTGTTCCAAAAAC+TGG + chr8_1:2295542-2295561 Msa1172350:CDS 40.0%
!! CTTGGGTTGTAACCAGTTTT+TGG - chr8_1:2295557-2295576 None:intergenic 40.0%
ACCCAAGAGAATTACGTTCA+TGG + chr8_1:2295570-2295589 Msa1172350:CDS 40.0%
CCCATGAACGTAATTCTCTT+GGG - chr8_1:2295574-2295593 None:intergenic 40.0%
CCCAAGAGAATTACGTTCAT+GGG + chr8_1:2295571-2295590 Msa1172350:CDS 40.0%
! GTTCATGGGCTAAGAAAACT+GGG + chr8_1:2295585-2295604 Msa1172350:CDS 40.0%
TCTGATTATTCAGGTGAAGC+AGG + chr8_1:2295614-2295633 Msa1172350:intron 40.0%
CTGATTATTCAGGTGAAGCA+GGG + chr8_1:2295615-2295634 Msa1172350:intron 40.0%
CCTCTTCCTCTATGATGAAA+AGG - chr8_1:2295665-2295684 None:intergenic 40.0%
! CCTTTTCATCATAGAGGAAG+AGG + chr8_1:2295662-2295681 Msa1172350:CDS 40.0%
! GAACCTGTTTTGCCTTTGAA+TGG + chr8_1:2295794-2295813 Msa1172350:CDS 40.0%
TCACCATTCAAAGGCAAAAC+AGG - chr8_1:2295800-2295819 None:intergenic 40.0%
! GTTTTGCCTTTGAATGGTGA+TGG + chr8_1:2295800-2295819 Msa1172350:CDS 40.0%
! GAGAGGAAAGTTGGTTTAAG+AGG + chr8_1:2295824-2295843 Msa1172350:CDS 40.0%
! GGGAATGGTGTTAATGTGAA+TGG + chr8_1:2295845-2295864 Msa1172350:CDS 40.0%
!! GTGAATGGTAATGGTGGTAA+TGG + chr8_1:2295860-2295879 Msa1172350:intron 40.0%
GATGAGGAGAATGTGATACA+TGG + chr8_1:2295923-2295942 Msa1172350:CDS 40.0%
GAGAATGTGATACATGGTGA+TGG + chr8_1:2295929-2295948 Msa1172350:CDS 40.0%
!! ACATGGTGATGGTGAAGTTA+AGG + chr8_1:2295940-2295959 Msa1172350:CDS 40.0%
TCTCCAAATTCAACTCCTTC+TGG - chr8_1:2295977-2295996 None:intergenic 40.0%
GAAGGAGTTGAATTTGGAGA+TGG + chr8_1:2295977-2295996 Msa1172350:CDS 40.0%
!! TTGAATTTGGAGATGGTGGA+TGG + chr8_1:2295984-2296003 Msa1172350:CDS 40.0%
AGTCCACACTTCAAATCAGA+TGG - chr8_1:2296016-2296035 None:intergenic 40.0%
TCGGAATCATATTGAAGTGG+AGG - chr8_1:2296706-2296725 None:intergenic 40.0%
GCTTCGGAATCATATTGAAG+TGG - chr8_1:2296709-2296728 None:intergenic 40.0%
!! CGCTATTTTAAACTCGGCTT+CGG - chr8_1:2296725-2296744 None:intergenic 40.0%
! CGAAGCCGAGTTTAAAATAG+CGG + chr8_1:2296723-2296742 Msa1172350:intron 40.0%
TTAACCAAAACTCTCCGCAA+TGG - chr8_1:2296777-2296796 None:intergenic 40.0%
ATGGTCCATGACTGTGATTT+AGG - chr8_1:2296870-2296889 None:intergenic 40.0%
CCGTGTAGGGTTTCAAATAA+TGG - chr8_1:2296889-2296908 None:intergenic 40.0%
GCCTTGTCAAGTCAGATTAT+TGG + chr8_1:2296909-2296928 Msa1172350:intron 40.0%
! GCCAATAATCTGACTTGACA+AGG - chr8_1:2296913-2296932 None:intergenic 40.0%
!! GAATCGAACTTGTTGGTTTC+AGG - chr8_1:2296935-2296954 None:intergenic 40.0%
GCAACTAGAATCGAACTTGT+TGG - chr8_1:2296942-2296961 None:intergenic 40.0%
AACACTTGCAGTCATCTCAT+TGG - chr8_1:2297284-2297303 None:intergenic 40.0%
GAGATGACTGCAAGTGTTTA+TGG + chr8_1:2297286-2297305 Msa1172350:intron 40.0%
AGAAACTGGGAAAAATCAGG+GGG - chr8_1:2297447-2297466 None:intergenic 40.0%
CAGCACTATATATCATTGGC+TGG + chr8_1:2297622-2297641 Msa1172350:CDS 40.0%
TGACTGGTACCATGACTAAT+GGG - chr8_1:2297663-2297682 None:intergenic 40.0%
ATGACTGGTACCATGACTAA+TGG - chr8_1:2297664-2297683 None:intergenic 40.0%
ATTAGTCATGGTACCAGTCA+TGG + chr8_1:2297663-2297682 Msa1172350:CDS 40.0%
TTAGTCATGGTACCAGTCAT+GGG + chr8_1:2297664-2297683 Msa1172350:CDS 40.0%
CTCGTTTGTGTATTTAGCAC+CGG + chr8_1:2297889-2297908 Msa1172350:CDS 40.0%
CACATAATGAGGGAACTTCA+AGG + chr8_1:2298157-2298176 Msa1172350:CDS 40.0%
ATGTGTCTCTTTATCTCGGA+TGG - chr8_1:2298341-2298360 None:intergenic 40.0%
!! CATTGCTTTTGCTGAAGTTG+TGG - chr8_1:2298668-2298687 None:intergenic 40.0%
TAGGTTAATCAACCCTGTTG+TGG + chr8_1:2298761-2298780 Msa1172350:intron 40.0%
GGTTTAGCGTTCTTCAGTTA+CGG + chr8_1:2298807-2298826 Msa1172350:CDS 40.0%
CACTGTTCCACAAATTGCAT+TGG + chr8_1:2298860-2298879 Msa1172350:CDS 40.0%
ATAACTGAAGAACCCTGCAT+TGG - chr8_1:2298918-2298937 None:intergenic 40.0%
! TGTTTGTTGAAGCATCTTCG+AGG + chr8_1:2299061-2299080 Msa1172350:intron 40.0%
CTTCGAGGAATATCTATCTC+TGG + chr8_1:2299076-2299095 Msa1172350:CDS 40.0%
CAAGTTATTGTTGCGCTCAA+CGG - chr8_1:2299235-2299254 None:intergenic 40.0%
! TTTGCATCCCTTTTAACAGC+TGG + chr8_1:2299259-2299278 Msa1172350:CDS 40.0%
! TTGCATCCCTTTTAACAGCT+GGG + chr8_1:2299260-2299279 Msa1172350:CDS 40.0%
!! CATATACCATGAAGCATTGC+AGG + chr8_1:2299359-2299378 Msa1172350:CDS 40.0%
ATACCCCACTGTAAAGGATA+AGG - chr8_1:2299430-2299449 None:intergenic 40.0%
! GTATCCCTATTTTCCACTTC+AGG + chr8_1:2299446-2299465 Msa1172350:CDS 40.0%
GAAGTCCTGAAGTGGAAAAT+AGG - chr8_1:2299454-2299473 None:intergenic 40.0%
TGATTATGGAAGTCCTGAAG+TGG - chr8_1:2299462-2299481 None:intergenic 40.0%
CTTCAGGACTTCCATAATCA+TGG + chr8_1:2299462-2299481 Msa1172350:CDS 40.0%
AATCATGGTCATAGTGTCAC+TGG + chr8_1:2299477-2299496 Msa1172350:CDS 40.0%
! ACTGGTTGCTTCTGTTGATT+CGG + chr8_1:2299495-2299514 Msa1172350:CDS 40.0%
! AAAGCAAGTATCGCATTCAG+TGG + chr8_1:2299558-2299577 Msa1172350:intron 40.0%
!!! CACTGGTTTATCCTTTTTGC+AGG + chr8_1:2299599-2299618 Msa1172350:intron 40.0%
! GGTTTATCCTTTTTGCAGGT+TGG + chr8_1:2299603-2299622 Msa1172350:intron 40.0%
GGAGGGTTTCTGTAGTATAT+TGG + chr8_1:2299701-2299720 Msa1172350:CDS 40.0%
GGTTTCTGTAGTATATTGGC+TGG + chr8_1:2299705-2299724 Msa1172350:CDS 40.0%
!! GTAGTATATTGGCTGGTCTT+TGG + chr8_1:2299712-2299731 Msa1172350:CDS 40.0%
!! AGTATATTGGCTGGTCTTTG+GGG + chr8_1:2299714-2299733 Msa1172350:CDS 40.0%
TTCTGTCAAAGTCGTTGAAC+CGG - chr8_1:2299748-2299767 None:intergenic 40.0%
CTGCTATACTGTGTTTCATG+TGG + chr8_1:2300055-2300074 Msa1172350:CDS 40.0%
GACCATACTGTAAAGTCGAT+AGG - chr8_1:2300101-2300120 None:intergenic 40.0%
CGCATAAGGAACAAGATAAC+TGG - chr8_1:2300232-2300251 None:intergenic 40.0%
! TGTTTAAGGCCTGAATGGAA+TGG - chr8_1:2300270-2300289 None:intergenic 40.0%
TCTTATGTCCATGAACATGG+TGG + chr8_1:2300462-2300481 Msa1172350:CDS 40.0%
! AAGAACGAGGAGTGTATACA+TGG + chr8_1:2300536-2300555 Msa1172350:CDS 40.0%
CAACACCATGCAAGTTTCTT+TGG - chr8_1:2300616-2300635 None:intergenic 40.0%
! TTGCTGTTGGTTGAAGTGAT+TGG + chr8_1:2300633-2300652 Msa1172350:exon 40.0%
! TGCTGTTGGTTGAAGTGATT+GGG + chr8_1:2300634-2300653 Msa1172350:exon 40.0%
AAGAGGGTCTTCATCTTCTC+CGG + chr8_1:2294455-2294474 Msa1172350:intron 45.0%
TGGATTTACCAGAATGACCC+TGG - chr8_1:2295321-2295340 None:intergenic 45.0%
GCCCATGAACGTAATTCTCT+TGG - chr8_1:2295575-2295594 None:intergenic 45.0%
! CGTTCATGGGCTAAGAAAAC+TGG + chr8_1:2295584-2295603 Msa1172350:CDS 45.0%
! ACAGTCACAAGCTGGTGTTT+TGG + chr8_1:2295748-2295767 Msa1172350:CDS 45.0%
!!! GTGTTTTGGAGGAGAATGTG+AGG + chr8_1:2295762-2295781 Msa1172350:CDS 45.0%
CTCTCACCATCACCATTCAA+AGG - chr8_1:2295809-2295828 None:intergenic 45.0%
!! CTTTGAATGGTGATGGTGAG+AGG + chr8_1:2295807-2295826 Msa1172350:CDS 45.0%
!! GGTAATGGTGGTAATGGTCA+TGG + chr8_1:2295866-2295885 Msa1172350:intron 45.0%
GGAGTTGAATTTGGAGATGG+TGG + chr8_1:2295980-2295999 Msa1172350:CDS 45.0%
!! ATTTGGAGATGGTGGATGGA+AGG + chr8_1:2295988-2296007 Msa1172350:CDS 45.0%
!! TTTGGAGATGGTGGATGGAA+GGG + chr8_1:2295989-2296008 Msa1172350:CDS 45.0%
! GGACCATCTGATTTGAAGTG+TGG + chr8_1:2296010-2296029 Msa1172350:CDS 45.0%
! GTTTTGCCATGTCTGAATGC+TGG + chr8_1:2296625-2296644 Msa1172350:intron 45.0%
!! GATAAAGGCTTGGAGGTGTT+GGG - chr8_1:2296672-2296691 None:intergenic 45.0%
! AGATAAAGGCTTGGAGGTGT+TGG - chr8_1:2296673-2296692 None:intergenic 45.0%
!! CGCGACCGCTATTTTAAACT+CGG - chr8_1:2296731-2296750 None:intergenic 45.0%
! CGAGTTTAAAATAGCGGTCG+CGG + chr8_1:2296729-2296748 Msa1172350:intron 45.0%
GTGCAGTATAGTTGTGATGC+CGG - chr8_1:2297831-2297850 None:intergenic 45.0%
TCCCTTGCACTAAAGGAAGT+CGG - chr8_1:2297868-2297887 None:intergenic 45.0%
GCTTGATGTCTATCCTACTC+AGG + chr8_1:2298227-2298246 Msa1172350:CDS 45.0%
CCAAGCAAATACCAGCTTGT+GGG - chr8_1:2298836-2298855 None:intergenic 45.0%
TCCAAGCAAATACCAGCTTG+TGG - chr8_1:2298837-2298856 None:intergenic 45.0%
AGTCATGCAGTACCAATGCA+GGG + chr8_1:2298903-2298922 Msa1172350:intron 45.0%
CGTTGAGCGCAACAATAACT+TGG + chr8_1:2299233-2299252 Msa1172350:CDS 45.0%
! TGCATCCCTTTTAACAGCTG+GGG + chr8_1:2299261-2299280 Msa1172350:CDS 45.0%
TACACCCCCAGCTGTTAAAA+GGG - chr8_1:2299269-2299288 None:intergenic 45.0%
ATACACCCCCAGCTGTTAAA+AGG - chr8_1:2299270-2299289 None:intergenic 45.0%
TGCAGCAGTAGACAATGCAT+CGG - chr8_1:2299395-2299414 None:intergenic 45.0%
ATGCATTGTCTACTGCTGCA+TGG + chr8_1:2299395-2299414 Msa1172350:CDS 45.0%
TGCATTGTCTACTGCTGCAT+GGG + chr8_1:2299396-2299415 Msa1172350:CDS 45.0%
ATAGGGATACCCCACTGTAA+AGG - chr8_1:2299436-2299455 None:intergenic 45.0%
GTATCAAGACTCTGAGTCAC+TGG + chr8_1:2299582-2299601 Msa1172350:intron 45.0%
AACCCTCCAATGCAATTCCT+CGG - chr8_1:2299689-2299708 None:intergenic 45.0%
ACATCACAAAGGTGGCAAGT+AGG + chr8_1:2299784-2299803 Msa1172350:CDS 45.0%
! AGTAGGAGAGTAGTGGAACT+TGG + chr8_1:2299801-2299820 Msa1172350:CDS 45.0%
!! GGCCTATCGACTTTACAGTA+TGG + chr8_1:2300096-2300115 Msa1172350:CDS 45.0%
! ATGGTCAATCAGCTAGCTTC+AGG + chr8_1:2300115-2300134 Msa1172350:intron 45.0%
AGGATGGAATGGACATTCCA+AGG - chr8_1:2300170-2300189 None:intergenic 45.0%
GTATAAGACTTGACTCAGGC+TGG - chr8_1:2300206-2300225 None:intergenic 45.0%
GGCAGTATAAGACTTGACTC+AGG - chr8_1:2300210-2300229 None:intergenic 45.0%
CGCTCTTATGTCCATGAACA+TGG + chr8_1:2300459-2300478 Msa1172350:CDS 45.0%
CAGTGTAACCACCATGTTCA+TGG - chr8_1:2300473-2300492 None:intergenic 45.0%
GAACATGGTGGTTACACTGT+TGG + chr8_1:2300474-2300493 Msa1172350:CDS 45.0%
!! ACTGTTGGTGGCATTTCTAC+TGG + chr8_1:2300489-2300508 Msa1172350:CDS 45.0%
! CTCGTTCTTGTTTACTTCCC+GGG - chr8_1:2300525-2300544 None:intergenic 45.0%
! CCTCGTTCTTGTTTACTTCC+CGG - chr8_1:2300526-2300545 None:intergenic 45.0%
GGAATATTCAGATTGCAGCG+AGG - chr8_1:2300590-2300609 None:intergenic 45.0%
CCATGCAAGTTTCTTTGGCA+GGG - chr8_1:2300611-2300630 None:intergenic 45.0%
ACCATGCAAGTTTCTTTGGC+AGG - chr8_1:2300612-2300631 None:intergenic 45.0%
!! AACTTGCATGGTGTTGCTGT+TGG + chr8_1:2300620-2300639 Msa1172350:CDS 45.0%
!!! TTTTTTATTTTTATTTTTGT+AGG + chr8_1:2299988-2300007 Msa1172350:intron 5.0%
GGGGAGGATAGAACATGACA+AGG + chr8_1:2294500-2294519 Msa1172350:CDS 50.0%
TGCCCTTGGCTCAAGTGTTT+GGG + chr8_1:2294555-2294574 Msa1172350:CDS 50.0%
CTCCCAAACACTTGAGCCAA+GGG - chr8_1:2294560-2294579 None:intergenic 50.0%
ACTCCCAAACACTTGAGCCA+AGG - chr8_1:2294561-2294580 None:intergenic 50.0%
ACTGGTGAAGGAGATGGAAG+TGG - chr8_1:2295341-2295360 None:intergenic 50.0%
AGAGTGACTGGTGAAGGAGA+TGG - chr8_1:2295347-2295366 None:intergenic 50.0%
GAAGTGAGAGTGACTGGTGA+AGG - chr8_1:2295353-2295372 None:intergenic 50.0%
TGGATCTCAACACCCCTAGT+TGG - chr8_1:2295719-2295738 None:intergenic 50.0%
CTTGTGACTGTGAAGCTGGT+TGG - chr8_1:2295739-2295758 None:intergenic 50.0%
!! GTCACAAGCTGGTGTTTTGG+AGG + chr8_1:2295751-2295770 Msa1172350:CDS 50.0%
! GGTGATGGTGAGAGGAAAGT+TGG + chr8_1:2295815-2295834 Msa1172350:CDS 50.0%
TCATCCTTCTCCTCAGTCAC+AGG - chr8_1:2295908-2295927 None:intergenic 50.0%
TGTGACTGAGGAGAAGGATG+AGG + chr8_1:2295907-2295926 Msa1172350:CDS 50.0%
GACATGGCAAAACTCGTGCA+GGG - chr8_1:2296618-2296637 None:intergenic 50.0%
AGACATGGCAAAACTCGTGC+AGG - chr8_1:2296619-2296638 None:intergenic 50.0%
CAAAACTCTCCGCAATGGCA+AGG - chr8_1:2296772-2296791 None:intergenic 50.0%
! CTTGCCATTGCGGAGAGTTT+TGG + chr8_1:2296770-2296789 Msa1172350:intron 50.0%
CGGGTCCTAAATCACAGTCA+TGG + chr8_1:2296862-2296881 Msa1172350:intron 50.0%
ACATCTGTTCCACCCATGAC+TGG - chr8_1:2297679-2297698 None:intergenic 50.0%
ACCCGACTTCCTTTAGTGCA+AGG + chr8_1:2297863-2297882 Msa1172350:CDS 50.0%
CCCTTGCACTAAAGGAAGTC+GGG - chr8_1:2297867-2297886 None:intergenic 50.0%
CCCGACTTCCTTTAGTGCAA+GGG + chr8_1:2297864-2297883 Msa1172350:CDS 50.0%
AACGAGCTCCCTTGCACTAA+AGG - chr8_1:2297875-2297894 None:intergenic 50.0%
AAACCTACAGCAGCAACCGT+TGG - chr8_1:2298792-2298811 None:intergenic 50.0%
AGTTACGGTTTCCCACAAGC+TGG + chr8_1:2298822-2298841 Msa1172350:CDS 50.0%
CCCACAAGCTGGTATTTGCT+TGG + chr8_1:2298833-2298852 Msa1172350:CDS 50.0%
GAGTCATGCAGTACCAATGC+AGG + chr8_1:2298902-2298921 Msa1172350:intron 50.0%
! GCATCCCTTTTAACAGCTGG+GGG + chr8_1:2299262-2299281 Msa1172350:CDS 50.0%
ATCAGCCCTGCAATGCTTCA+TGG - chr8_1:2299368-2299387 None:intergenic 50.0%
AATTCAAGGCCTCCAACTCC+AGG + chr8_1:2299654-2299673 Msa1172350:CDS 50.0%
TGTGAGCCGAGGAATTGCAT+TGG + chr8_1:2299680-2299699 Msa1172350:CDS 50.0%
AGCCGAGGAATTGCATTGGA+GGG + chr8_1:2299684-2299703 Msa1172350:CDS 50.0%
TCTCCTTGCTTCCATTCCAC+AGG + chr8_1:2300023-2300042 Msa1172350:CDS 50.0%
ACACAGTATAGCAGCAGCCA+AGG - chr8_1:2300049-2300068 None:intergenic 50.0%
TTTCATGTGGGCTCTTACCG+TGG + chr8_1:2300068-2300087 Msa1172350:CDS 50.0%
TCAAGTGGGCCATTCCATTC+AGG + chr8_1:2300258-2300277 Msa1172350:CDS 50.0%
CATGGTGGTTACACTGTTGG+TGG + chr8_1:2300477-2300496 Msa1172350:CDS 50.0%
TCTACTGGACAACACTGTCC+CGG + chr8_1:2300504-2300523 Msa1172350:CDS 50.0%
CCGGGAAGTAAACAAGAACG+AGG + chr8_1:2300523-2300542 Msa1172350:CDS 50.0%
CCCTGCCAAAGAAACTTGCA+TGG + chr8_1:2300608-2300627 Msa1172350:CDS 50.0%
!! AGCAACGGGCTTTTGCTGGT+TGG - chr8_1:2294536-2294555 None:intergenic 55.0%
ACTTGAGCCAAGGGCAGCAA+CGG - chr8_1:2294551-2294570 None:intergenic 55.0%
CTGCCCTTGGCTCAAGTGTT+TGG + chr8_1:2294554-2294573 Msa1172350:CDS 55.0%
TCAACTAACGGCCACACTCC+AGG + chr8_1:2295300-2295319 Msa1172350:intron 55.0%
CAACTAACGGCCACACTCCA+GGG + chr8_1:2295301-2295320 Msa1172350:intron 55.0%
ACCAGAATGACCCTGGAGTG+TGG - chr8_1:2295314-2295333 None:intergenic 55.0%
TCAGGTGAAGCAGGGACTAG+TGG + chr8_1:2295623-2295642 Msa1172350:intron 55.0%
CCAGCTTGTGACTGTGAAGC+TGG - chr8_1:2295743-2295762 None:intergenic 55.0%
CCAGCTTCACAGTCACAAGC+TGG + chr8_1:2295740-2295759 Msa1172350:CDS 55.0%
TGCAGTTGCTCCTGTGACTG+AGG + chr8_1:2295895-2295914 Msa1172350:intron 55.0%
TGCTCCTGTGACTGAGGAGA+AGG + chr8_1:2295901-2295920 Msa1172350:CDS 55.0%
TGTGCGCCAGCATTCAGACA+TGG - chr8_1:2296634-2296653 None:intergenic 55.0%
! GGTGTTGGGAGGGACATACT+TGG - chr8_1:2296658-2296677 None:intergenic 55.0%
!! AAGGCTTGGAGGTGTTGGGA+GGG - chr8_1:2296668-2296687 None:intergenic 55.0%
!! AAAGGCTTGGAGGTGTTGGG+AGG - chr8_1:2296669-2296688 None:intergenic 55.0%
CAATGGCAAGGATCGCGACA+TGG - chr8_1:2296760-2296779 None:intergenic 55.0%
TGTCGCGATCCTTGCCATTG+CGG + chr8_1:2296760-2296779 Msa1172350:intron 55.0%
GACTTGACAAGGCCCGTGTA+GGG - chr8_1:2296902-2296921 None:intergenic 55.0%
TGACTTGACAAGGCCCGTGT+AGG - chr8_1:2296903-2296922 None:intergenic 55.0%
GTCATGGTACCAGTCATGGG+TGG + chr8_1:2297667-2297686 Msa1172350:CDS 55.0%
CTCACAACTCCTGGAGTTGG+AGG - chr8_1:2299666-2299685 None:intergenic 55.0%
ATTCCTCGGCTCACAACTCC+TGG - chr8_1:2299675-2299694 None:intergenic 55.0%
GAGCCGAGGAATTGCATTGG+AGG + chr8_1:2299683-2299702 Msa1172350:CDS 55.0%
!! TTGGCTGGTCTTTGGGGTTC+AGG + chr8_1:2299720-2299739 Msa1172350:CDS 55.0%
!! GGTCTTTGGGGTTCAGGTAC+CGG + chr8_1:2299726-2299745 Msa1172350:CDS 55.0%
GGTGGCAAGTAGGAGAGTAG+TGG + chr8_1:2299794-2299813 Msa1172350:CDS 55.0%
AGGCCTGTGGAATGGAAGCA+AGG - chr8_1:2300029-2300048 None:intergenic 55.0%
TGCTTCCATTCCACAGGCCT+TGG + chr8_1:2300029-2300048 Msa1172350:CDS 55.0%
TGGGCTCTTACCGTGGCATT+GGG + chr8_1:2300075-2300094 Msa1172350:CDS 55.0%
AGTCGATAGGCCCAATGCCA+CGG - chr8_1:2300088-2300107 None:intergenic 55.0%
GTCGGCGTTGCATTGTTCCT+TGG + chr8_1:2300150-2300169 Msa1172350:CDS 55.0%
CTTATGCGGCAGCGTCAAGT+GGG + chr8_1:2300244-2300263 Msa1172350:CDS 55.0%
CTACTGGACAACACTGTCCC+GGG + chr8_1:2300505-2300524 Msa1172350:CDS 55.0%
GAGAGCTGAAGACATTGCCG+CGG + chr8_1:2300561-2300580 Msa1172350:CDS 55.0%
CAAAAGCCCGTTGCTGCCCT+TGG + chr8_1:2294541-2294560 Msa1172350:CDS 60.0%
CTTGAGCCAAGGGCAGCAAC+GGG - chr8_1:2294550-2294569 None:intergenic 60.0%
GCCACACTCCAGGGTCATTC+TGG + chr8_1:2295310-2295329 Msa1172350:intron 60.0%
CCGTTGGCGCAACCACAACA+GGG - chr8_1:2298776-2298795 None:intergenic 60.0%
CCCTGTTGTGGTTGCGCCAA+CGG + chr8_1:2298773-2298792 Msa1172350:CDS 60.0%
ACCGTTGGCGCAACCACAAC+AGG - chr8_1:2298777-2298796 None:intergenic 60.0%
CGGCTCACAACTCCTGGAGT+TGG - chr8_1:2299669-2299688 None:intergenic 60.0%
ACTCCAGGAGTTGTGAGCCG+AGG + chr8_1:2299669-2299688 Msa1172350:CDS 60.0%
AGCAGCCAAGGCCTGTGGAA+TGG - chr8_1:2300037-2300056 None:intergenic 60.0%
ATAGCAGCAGCCAAGGCCTG+TGG - chr8_1:2300042-2300061 None:intergenic 60.0%
GTGGGCTCTTACCGTGGCAT+TGG + chr8_1:2300074-2300093 Msa1172350:CDS 60.0%
CCACTTGACGCTGCCGCATA+AGG - chr8_1:2300246-2300265 None:intergenic 60.0%
CCTTATGCGGCAGCGTCAAG+TGG + chr8_1:2300243-2300262 Msa1172350:CDS 60.0%
! AGATTGCAGCGAGGCATCCG+CGG - chr8_1:2300581-2300600 None:intergenic 60.0%
!! GGGCAGCAACGGGCTTTTGC+TGG - chr8_1:2294540-2294559 None:intergenic 65.0%
GCGCCAACGGTTGCTGCTGT+AGG + chr8_1:2298786-2298805 Msa1172350:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 2294270 2300876 2294270 ID=Msa1172350;Name=Msa1172350
chr8_1 mRNA 2294270 2300876 2294270 ID=Msa1172350-mRNA-1;Parent=Msa1172350;Name=Msa1172350-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.6|0.43|1|0.66|0.56|16|225|775
chr8_1 exon 2294270 2294430 2294270 ID=Msa1172350-mRNA-1:exon:873;Parent=Msa1172350-mRNA-1
chr8_1 exon 2294458 2294578 2294458 ID=Msa1172350-mRNA-1:exon:874;Parent=Msa1172350-mRNA-1
chr8_1 exon 2295504 2295606 2295504 ID=Msa1172350-mRNA-1:exon:875;Parent=Msa1172350-mRNA-1
chr8_1 exon 2295627 2295875 2295627 ID=Msa1172350-mRNA-1:exon:876;Parent=Msa1172350-mRNA-1
chr8_1 exon 2295900 2296055 2295900 ID=Msa1172350-mRNA-1:exon:877;Parent=Msa1172350-mRNA-1
chr8_1 exon 2297599 2297696 2297599 ID=Msa1172350-mRNA-1:exon:878;Parent=Msa1172350-mRNA-1
chr8_1 exon 2297788 2297958 2297788 ID=Msa1172350-mRNA-1:exon:879;Parent=Msa1172350-mRNA-1
chr8_1 exon 2298148 2298248 2298148 ID=Msa1172350-mRNA-1:exon:880;Parent=Msa1172350-mRNA-1
chr8_1 exon 2298764 2298899 2298764 ID=Msa1172350-mRNA-1:exon:881;Parent=Msa1172350-mRNA-1
chr8_1 exon 2299073 2299123 2299073 ID=Msa1172350-mRNA-1:exon:882;Parent=Msa1172350-mRNA-1
chr8_1 exon 2299229 2299417 2299229 ID=Msa1172350-mRNA-1:exon:883;Parent=Msa1172350-mRNA-1
chr8_1 exon 2299442 2299516 2299442 ID=Msa1172350-mRNA-1:exon:884;Parent=Msa1172350-mRNA-1
chr8_1 exon 2299621 2299855 2299621 ID=Msa1172350-mRNA-1:exon:885;Parent=Msa1172350-mRNA-1
chr8_1 exon 2300010 2300117 2300010 ID=Msa1172350-mRNA-1:exon:886;Parent=Msa1172350-mRNA-1
chr8_1 exon 2300127 2300290 2300127 ID=Msa1172350-mRNA-1:exon:887;Parent=Msa1172350-mRNA-1
chr8_1 exon 2300442 2300876 2300442 ID=Msa1172350-mRNA-1:exon:888;Parent=Msa1172350-mRNA-1
chr8_1 CDS 2294270 2294430 2294270 ID=Msa1172350-mRNA-1:cds;Parent=Msa1172350-mRNA-1
chr8_1 CDS 2294458 2294578 2294458 ID=Msa1172350-mRNA-1:cds;Parent=Msa1172350-mRNA-1
chr8_1 CDS 2295504 2295606 2295504 ID=Msa1172350-mRNA-1:cds;Parent=Msa1172350-mRNA-1
chr8_1 CDS 2295627 2295875 2295627 ID=Msa1172350-mRNA-1:cds;Parent=Msa1172350-mRNA-1
chr8_1 CDS 2295900 2296055 2295900 ID=Msa1172350-mRNA-1:cds;Parent=Msa1172350-mRNA-1
chr8_1 CDS 2297599 2297696 2297599 ID=Msa1172350-mRNA-1:cds;Parent=Msa1172350-mRNA-1
chr8_1 CDS 2297788 2297958 2297788 ID=Msa1172350-mRNA-1:cds;Parent=Msa1172350-mRNA-1
chr8_1 CDS 2298148 2298248 2298148 ID=Msa1172350-mRNA-1:cds;Parent=Msa1172350-mRNA-1
chr8_1 CDS 2298764 2298899 2298764 ID=Msa1172350-mRNA-1:cds;Parent=Msa1172350-mRNA-1
chr8_1 CDS 2299073 2299123 2299073 ID=Msa1172350-mRNA-1:cds;Parent=Msa1172350-mRNA-1
chr8_1 CDS 2299229 2299417 2299229 ID=Msa1172350-mRNA-1:cds;Parent=Msa1172350-mRNA-1
chr8_1 CDS 2299442 2299516 2299442 ID=Msa1172350-mRNA-1:cds;Parent=Msa1172350-mRNA-1
chr8_1 CDS 2299621 2299855 2299621 ID=Msa1172350-mRNA-1:cds;Parent=Msa1172350-mRNA-1
chr8_1 CDS 2300010 2300117 2300010 ID=Msa1172350-mRNA-1:cds;Parent=Msa1172350-mRNA-1
chr8_1 CDS 2300127 2300290 2300127 ID=Msa1172350-mRNA-1:cds;Parent=Msa1172350-mRNA-1
chr8_1 CDS 2300442 2300651 2300442 ID=Msa1172350-mRNA-1:cds;Parent=Msa1172350-mRNA-1
chr8_1 three_prime_UTR 2300652 2300876 2300652 ID=Msa1172350-mRNA-1:three_prime_utr;Parent=Msa1172350-mRNA-1
Gene Sequence

>Msa1172350

ATGGAAATTGGGTCGAACTCAAAATCATTGAACAAAAGAAGTTGGAATCCTCTCATTGTTCCAAACACTGATCACAATCCAAAAAACTTAAATTCATGGGCTAAGAAAACCGATTTTGTACTTGATTACTCAGGAGAAGCATGGTCAAGTGAAAGTGAAAAAGGGTCTTCATCTTCTCCGGAGATAGAGAAAGATTCAATTGTGGGGAGGATAGAACATGACAAGGATATTGAGATCCAACCAGCAAAAGCCCGTTGCTGCCCTTGGCTCAAGTGTTTGGGAAAAAAGTGTAAATGGAAAACAAAGCTGAACCAAAAGTTGCACCTTTTGTTCCAAAAACTGGTTACAACCCAAGAGAATTACGTTCATGGGCTAAGAAAACTGGGTGAAGCAGGGACTAGTGGAAGTGAAAAGTTTGAACCTTTTCATCATAGAGGAAGAGGGTCATCTTCTTCTCCTAAGATAGAGATAGATCCAACTAGGGGTGTTGAGATCCAACCAGCTTCACAGTCACAAGCTGGTGTTTTGGAGGAGAATGTGAGGAAAGAGAATGAACCTGTTTTGCCTTTGAATGGTGATGGTGAGAGGAAAGTTGGTTTAAGAGGGAATGGTGTTAATGTGAATGGTAATGGTGTTGCTCCTGTGACTGAGGAGAAGGATGAGGAGAATGTGATACATGGTGATGGTGAAGTTAAGGTTAATGTGTTTCCAGAAGGAGTTGAATTTGGAGATGGTGGATGGAAGGGACCATCTGATTTGAAGTGTGGACTTAAAGAAAATCCGGGTTTAGTATCTCTTATCTATTATGGCTTACAGCACTATATATCATTGGCTGGTTCACTTGTATTAATCCCATTAGTCATGGTACCAGTCATGGGTGGAACAGATAAGGATACTGCTACCGTAATTTCTACAATGTTGTTTCTTTCCGGCATCACAACTATACTGCACTCTTACTTTGGCACCCGACTTCCTTTAGTGCAAGGGAGCTCGTTTGTGTATTTAGCACCGGCATTAGTCATTATAAATGCTCAAGAATATCGGAATCTTACAGAACACAAATTTAGACACATAATGAGGGAACTTCAAGGTGCTATAATTGTTGGTTCAATATTCCAATGTATCTTGGGATTTAGTGGCTTGATGTCTATCCTACTCAGGTTAATCAACCCTGTTGTGGTTGCGCCAACGGTTGCTGCTGTAGGTTTAGCGTTCTTCAGTTACGGTTTCCCACAAGCTGGTATTTGCTTGGAAATCACTGTTCCACAAATTGCATTGGTTCTATTATTCACTCTGCATCTTCGAGGAATATCTATCTCTGGACGCCACTTATTTCGAATTTATGCTGTTCCGTTGAGCGCAACAATAACTTGGATATTTGCATCCCTTTTAACAGCTGGGGGTGTATATAATTACAAAGAATGCAATCCCAATGTACCGAGTTCAAACATTCTTACTGATGCGTGTAGAAAACATGCATATACCATGAAGCATTGCAGGGCTGATGTTTCCGATGCATTGTCTACTGCTGCATGGTGGGGTATCCCTATTTTCCACTTCAGGACTTCCATAATCATGGTCATAGTGTCACTGGTTGCTTCTGTTGATTCGGTTGGAACTTATCGTACTACGTCACTTCAAGTTAATTCAAGGCCTCCAACTCCAGGAGTTGTGAGCCGAGGAATTGCATTGGAGGGTTTCTGTAGTATATTGGCTGGTCTTTGGGGTTCAGGTACCGGTTCAACGACTTTGACAGAAAACATGCACACAATTAACATCACAAAGGTGGCAAGTAGGAGAGTAGTGGAACTTGGAGCAGTTTTCTTGATCCTCTTCTCATTTGTAGGAAAAGTGGGTGCTCTCCTTGCTTCCATTCCACAGGCCTTGGCTGCTGCTATACTGTGTTTCATGTGGGCTCTTACCGTGGCATTGGGCCTATCGACTTTACAGTATGCTAGCTTCAGGAACATGACAATTGTCGGCGTTGCATTGTTCCTTGGAATGTCCATTCCATCCTATTTTCAACAATACCAGCCTGAGTCAAGTCTTATACTGCCCAGTTATCTTGTTCCTTATGCGGCAGCGTCAAGTGGGCCATTCCATTCAGGCCTTAAACAACTTGATTTTGCTATCAACGCTCTTATGTCCATGAACATGGTGGTTACACTGTTGGTGGCATTTCTACTGGACAACACTGTCCCGGGAAGTAAACAAGAACGAGGAGTGTATACATGGTCGAGAGCTGAAGACATTGCCGCGGATGCCTCGCTGCAATCTGAATATTCCCTGCCAAAGAAACTTGCATGGTGTTGCTGTTGGTTGAAGTGA
Protein sequence

>Msa1172350

MEIGSNSKSLNKRSWNPLIVPNTDHNPKNLNSWAKKTDFVLDYSGEAWSSESEKGSSSSPEIEKDSIVGRIEHDKDIEIQPAKARCCPWLKCLGKKCKWKTKLNQKLHLLFQKLVTTQENYVHGLRKLGEAGTSGSEKFEPFHHRGRGSSSSPKIEIDPTRGVEIQPASQSQAGVLEENVRKENEPVLPLNGDGERKVGLRGNGVNVNGNGVAPVTEEKDEENVIHGDGEVKVNVFPEGVEFGDGGWKGPSDLKCGLKENPGLVSLIYYGLQHYISLAGSLVLIPLVMVPVMGGTDKDTATVISTMLFLSGITTILHSYFGTRLPLVQGSSFVYLAPALVIINAQEYRNLTEHKFRHIMRELQGAIIVGSIFQCILGFSGLMSILLRLINPVVVAPTVAAVGLAFFSYGFPQAGICLEITVPQIALVLLFTLHLRGISISGRHLFRIYAVPLSATITWIFASLLTAGGVYNYKECNPNVPSSNILTDACRKHAYTMKHCRADVSDALSTAAWWGIPIFHFRTSIIMVIVSLVASVDSVGTYRTTSLQVNSRPPTPGVVSRGIALEGFCSILAGLWGSGTGSTTLTENMHTINITKVASRRVVELGAVFLILFSFVGKVGALLASIPQALAAAILCFMWALTVALGLSTLQYASFRNMTIVGVALFLGMSIPSYFQQYQPESSLILPSYLVPYAAASSGPFHSGLKQLDFAINALMSMNMVVTLLVAFLLDNTVPGSKQERGVYTWSRAEDIAADASLQSEYSLPKKLAWCCCWLK*