AlfalfaGEDB | Msa0051150

M. sativa cultivar zhongmu-4 / Msa0051150

KEGG: -
GO: GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030312 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071944 GO:0080060 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0051150	sp\|Q9FJV5\|KAN4_ARATH	47.176	301	111	9	21	316	17	274	1.04e-63	209

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0051150	G7I588	95.098	306	3	2	11	316	1	294	0.0	585

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0051150	TF	GARP-G2-like

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002360	Msa0051150	0.968247	2.087824e-128	-8.615850e-47
Msa0051150	Msa0051250	0.956843	1.128703e-114	-8.615850e-47
Msa0051150	Msa0343410	0.974311	6.215318e-138	-8.615850e-47
Msa0051150	Msa0580690	0.899544	1.783573e-77	-8.615850e-47

Showing 1 to 4 of 4 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0051150	MtrunA17_Chr1g0154261	95.098	306	3	2	11	316	1	294	0.0	585
Msa0051150	MtrunA17_Chr3g0109981	46.193	197	79	5	136	307	268	462	1.75e-40	149
Msa0051150	MtrunA17_Chr5g0410741	44.792	192	76	7	136	300	213	401	1.07e-34	132
Msa0051150	MtrunA17_Chr8g0366281	84.722	72	11	0	137	208	168	239	1.74e-34	131
Msa0051150	MtrunA17_Chr6g0479431	82.857	70	12	0	137	206	197	266	7.61e-33	127
Msa0051150	MtrunA17_Chr8g0379121	61.538	78	27	2	129	204	96	172	1.44e-21	96.3
Msa0051150	MtrunA17_Chr7g0243081	57.692	78	31	1	126	201	53	130	2.33e-21	94.7
Msa0051150	MtrunA17_Chr2g0320231	64.789	71	22	2	136	204	89	158	6.27e-20	90.9
Msa0051150	MtrunA17_Chr1g0210911	59.091	66	25	1	135	198	13	78	9.39e-20	89.7
Msa0051150	MtrunA17_Chr1g0162931	59.701	67	26	1	132	198	9	74	1.74e-19	88.2

Showing 1 to 10 of 34 entries

Previous1 2 3 4Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0051150	AT5G42630.1	47.176	301	111	9	21	316	17	274	1.06e-64	209
Msa0051150	AT5G42630.2	52.679	224	73	6	21	244	17	207	5.50e-53	176
Msa0051150	AT1G32240.2	61.290	124	27	3	85	208	177	279	8.33e-39	143
Msa0051150	AT1G32240.1	61.290	124	27	3	85	208	177	279	1.51e-38	143
Msa0051150	AT5G16560.1	48.438	192	70	8	136	302	213	400	4.83e-36	137
Msa0051150	AT4G17695.1	82.192	73	13	0	136	208	158	230	6.33e-35	132
Msa0051150	AT1G14600.1	57.500	80	32	1	123	200	2	81	8.85e-21	91.7
Msa0051150	AT2G42660.1	53.571	84	37	1	131	212	37	120	1.31e-20	91.3
Msa0051150	AT2G02060.2	60.870	69	25	1	129	195	14	82	4.72e-19	86.7
Msa0051150	AT2G02060.1	60.870	69	25	1	129	195	14	82	4.72e-19	86.7

Showing 1 to 10 of 52 entries

Previous1 2 3 4 5 6Next

Find 127 sgRNAs with CRISPR-Local

Find 382 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCGCGGCCATAGATGTG+AGG	0.691470	1_2:+5232856	None:intergenic
AACCACTTCAAAATTCACTT+AGG	0.547130	1_2:-5231803	Msa0051150:intron
AAGGAACCTCAGTACTCCCC+AGG	0.587521	1_2:-5233720	Msa0051150:five_prime_UTR
AAGGAGAAACAGCCTGGGAA+TGG	0.545633	1_2:-5228252	Msa0051150:CDS
AATGAAGGAAGGAAGGAAGA+GGG	0.515503	1_2:+5233296	None:intergenic
AATGGGATACTGCAGACACA+AGG	0.640188	1_2:-5231888	Msa0051150:CDS
AATGTTGGGTCACGTTGATG+AGG	0.616823	1_2:+5232988	None:intergenic
ACAATCAGTTATTCATGACT+AGG	0.611201	1_2:-5227927	Msa0051150:CDS
ACACGTCAAGAGTCACTTAC+AGG	0.413830	1_2:-5232396	Msa0051150:intron
ACACTTGGAAGGCCTAATTG+GGG	0.657474	1_2:-5229214	Msa0051150:CDS

Showing 1 to 10 of 127 entries

Previous1 2 3 4 5…13Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TGAGATAATATTAGTAGCAG+TGG	+	chr1_2:5227973-5227992	None:intergenic	30.0%
AGCGAAAAGTTAGTGAAAAA+GGG	+	chr1_2:5228033-5228052	None:intergenic	30.0%
CTTAAATCAATTACCCTAGT+TGG	-	chr1_2:5228204-5228223	Msa0051150:intron	30.0%
CTTATGTTTAAAGATAGGTC+TGG	+	chr1_2:5228465-5228484	None:intergenic	30.0%
AAGTGCTCATGAAGAATAAT+AGG	+	chr1_2:5228921-5228940	None:intergenic	30.0%
GTTAGAGTTAATGAATGTGA+AGG	-	chr1_2:5229180-5229199	Msa0051150:CDS	30.0%
CTCATTAAACTGTAAGACTA+TGG	+	chr1_2:5229257-5229276	None:intergenic	30.0%
AACCACTTCAAAATTCACTT+AGG	-	chr1_2:5229809-5229828	Msa0051150:intron	30.0%
TTAAACCAAACATACCCTAA+GGG	+	chr1_2:5230151-5230170	None:intergenic	30.0%
TTTAAACCAAACATACCCTA+AGG	+	chr1_2:5230152-5230171	None:intergenic	30.0%

Showing 1 to 10 of 382 entries

Previous1 2 3 4 5…39Next

Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	5227879	5233755	5227879	ID=Msa0051150;Name=Msa0051150
chr1_2	mRNA	5227879	5233755	5227879	ID=Msa0051150-mRNA-1;Parent=Msa0051150;Name=Msa0051150-mRNA-1;_AED=0.25;_eAED=0.25;_QI=523\|0.62\|0.55\|0.66\|1\|1\|9\|0\|418
chr1_2	exon	5227879	5228011	5227879	ID=Msa0051150-mRNA-1:exon:1528;Parent=Msa0051150-mRNA-1
chr1_2	exon	5228114	5228178	5228114	ID=Msa0051150-mRNA-1:exon:1527;Parent=Msa0051150-mRNA-1
chr1_2	exon	5228220	5228328	5228220	ID=Msa0051150-mRNA-1:exon:1526;Parent=Msa0051150-mRNA-1
chr1_2	exon	5229172	5229296	5229172	ID=Msa0051150-mRNA-1:exon:1525;Parent=Msa0051150-mRNA-1
chr1_2	exon	5229447	5229546	5229447	ID=Msa0051150-mRNA-1:exon:1524;Parent=Msa0051150-mRNA-1
chr1_2	exon	5231804	5231912	5231804	ID=Msa0051150-mRNA-1:exon:1523;Parent=Msa0051150-mRNA-1
chr1_2	exon	5232108	5232147	5232108	ID=Msa0051150-mRNA-1:exon:1522;Parent=Msa0051150-mRNA-1
chr1_2	exon	5232397	5232473	5232397	ID=Msa0051150-mRNA-1:exon:1521;Parent=Msa0051150-mRNA-1
chr1_2	exon	5232734	5233755	5232734	ID=Msa0051150-mRNA-1:exon:1520;Parent=Msa0051150-mRNA-1
chr1_2	five_prime_UTR	5233233	5233755	5233233	ID=Msa0051150-mRNA-1:five_prime_utr;Parent=Msa0051150-mRNA-1
chr1_2	CDS	5232734	5233232	5232734	ID=Msa0051150-mRNA-1:cds;Parent=Msa0051150-mRNA-1
chr1_2	CDS	5232397	5232473	5232397	ID=Msa0051150-mRNA-1:cds;Parent=Msa0051150-mRNA-1
chr1_2	CDS	5232108	5232147	5232108	ID=Msa0051150-mRNA-1:cds;Parent=Msa0051150-mRNA-1
chr1_2	CDS	5231804	5231912	5231804	ID=Msa0051150-mRNA-1:cds;Parent=Msa0051150-mRNA-1
chr1_2	CDS	5229447	5229546	5229447	ID=Msa0051150-mRNA-1:cds;Parent=Msa0051150-mRNA-1
chr1_2	CDS	5229172	5229296	5229172	ID=Msa0051150-mRNA-1:cds;Parent=Msa0051150-mRNA-1
chr1_2	CDS	5228220	5228328	5228220	ID=Msa0051150-mRNA-1:cds;Parent=Msa0051150-mRNA-1
chr1_2	CDS	5228114	5228178	5228114	ID=Msa0051150-mRNA-1:cds;Parent=Msa0051150-mRNA-1
chr1_2	CDS	5227879	5228011	5227879	ID=Msa0051150-mRNA-1:cds;Parent=Msa0051150-mRNA-1

Gene Sequence

>Msa0051150

ATGTTCACTAATAATTCTTCACATCCTAAAATGCATACTTTATTTTCACCTTTGTTAGAACCAGACCTATCTTTAAACATAAGTCTTCCTTCTAATATTTCTGATTCTGAACCCAAAGGAATAACAAAACCACTTTATAATGATAATATATGTTCAATATCAACTACTTCTGATTCAGCTAGTAGTGGAAGTGAGTTAAGCCATGAAAATCCCTTCATCTATCCTCATCAACGTGACCCAACATTGAGATTAGGCTTTGGAAATTCAGATTTGATGAATCCACATCATCATAATCATCACCTTCATCGTCATCAAGTGCAAGGTGTATCAAGAAACTTTAACCAACACTTTCAACCTCACATCTATGGCCGCGATTTCAAGCGAAATACAAGAGTCGTTAATGGTGTTAAAAGAAGTGTTAGAGCTCCAAGAATGAGATGGACTACAACCCTTCATTCCCATTTTGTTCACGCTGTTCAACTTCTTGGTGGTCATGAAAGAGCAACACCAAAATCTGTGTTAGAGTTAATGAATGTGAAGGATCTAACCCTAGCACACGTCAAGAGTCACTTACAGATGTATAGAACAGTGAAGACCACTGACAAATCAGGAGCAGGTAATGGGATACTGCAGACACAAGGGATTAATATTGTTCCTTTGCATGGAGCTAATTCCTCAGCTGATGAGAGACCAAATTTACCTCAACCACTTCAAAATTCACTTAGGACATCTTGGCAACCATCAATAGAGACAAATACAAACAATACTGAAGAAAAATCCGAAATTGGTTTGACGTATTCTAATTTGAAGGAAAATGATACCATGGTGAAGAGGTTGGATTCTGCCCAATTGACATGTTCAGACACTATGATTGACTTAGAATTCACACTTGGAAGGCCTAATTGGGGAAAAGACCATGCTGAATCATCAAGAGAATTAGCTCTTCTTAATATTCAATCAAATCAAGGTTTCGGTGGTGGATATATGCGATTTGGGGTGGGAGGAAGGAGAAACAGCCTGGGAATGGCGTCATCGGTTGTGGACTTGGGAGGAGGAGCTCATAATTCTACATATCAATGGCATTGGAGGCTAGATCCTAGTGGTGGTTATTCGGTTCGGGGCATACTTCTTCGGAGTAGGTTGCCAATGAAGGATAATTTGGTGGCGCGCGACATTCTTTCTCACGACAATCAGTTATTCATGACTAGGTGTGGAGGCTTCGAGACTGCTCAACATCTATTTCTGTTTTGCCCCTGA

Protein sequence

>Msa0051150

MFTNNSSHPKMHTLFSPLLEPDLSLNISLPSNISDSEPKGITKPLYNDNICSISTTSDSASSGSELSHENPFIYPHQRDPTLRLGFGNSDLMNPHHHNHHLHRHQVQGVSRNFNQHFQPHIYGRDFKRNTRVVNGVKRSVRAPRMRWTTTLHSHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKTTDKSGAGNGILQTQGINIVPLHGANSSADERPNLPQPLQNSLRTSWQPSIETNTNNTEEKSEIGLTYSNLKENDTMVKRLDSAQLTCSDTMIDLEFTLGRPNWGKDHAESSRELALLNIQSNQGFGGGYMRFGVGGRRNSLGMASSVVDLGGGAHNSTYQWHWRLDPSGGYSVRGILLRSRLPMKDNLVARDILSHDNQLFMTRCGGFETAQHLFLFCP*