AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0343410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0343410 MtrunA17_Chr1g0154261 95.098 306 3 2 11 316 1 294 0.0 584
Msa0343410 MtrunA17_Chr3g0109981 46.193 197 79 5 136 307 268 462 1.47e-40 150
Msa0343410 MtrunA17_Chr5g0410741 44.792 192 76 7 136 300 213 401 9.81e-35 133
Msa0343410 MtrunA17_Chr8g0366281 84.722 72 11 0 137 208 168 239 1.72e-34 131
Msa0343410 MtrunA17_Chr6g0479431 82.857 70 12 0 137 206 197 266 8.16e-33 127
Msa0343410 MtrunA17_Chr8g0379121 61.538 78 27 2 129 204 96 172 1.42e-21 96.3
Msa0343410 MtrunA17_Chr7g0243081 57.692 78 31 1 126 201 53 130 2.35e-21 94.7
Msa0343410 MtrunA17_Chr2g0320231 64.789 71 22 2 136 204 89 158 6.33e-20 90.9
Msa0343410 MtrunA17_Chr1g0210911 59.091 66 25 1 135 198 13 78 1.01e-19 89.7
Msa0343410 MtrunA17_Chr1g0162931 59.701 67 26 1 132 198 9 74 1.86e-19 87.8
Msa0343410 MtrunA17_Chr7g0261911 62.121 66 25 0 143 208 263 328 3.09e-18 86.7
Msa0343410 MtrunA17_Chr2g0288601 66.129 62 20 1 132 193 62 122 4.58e-18 80.1
Msa0343410 MtrunA17_Chr1g0190301 58.824 68 28 0 139 206 172 239 2.10e-17 83.6
Msa0343410 MtrunA17_Chr3g0095611 48.000 75 37 1 126 198 1 75 5.08e-17 79.3
Msa0343410 MtrunA17_Chr7g0274471 66.071 56 19 0 143 198 219 274 9.32e-17 82.0
Msa0343410 MtrunA17_Chr1g0197171 42.982 114 53 2 89 202 3 104 4.40e-16 78.6
Msa0343410 MtrunA17_Chr5g0409731 67.925 53 17 0 143 195 26 78 6.72e-16 77.8
Msa0343410 MtrunA17_Chr2g0283951 52.381 84 31 3 136 213 81 161 1.33e-15 77.8
Msa0343410 MtrunA17_Chr7g0258551 53.968 63 29 0 144 206 214 276 3.00e-15 77.0
Msa0343410 MtrunA17_Chr2g0290991 58.333 60 25 0 143 202 40 99 6.99e-15 75.1
Msa0343410 MtrunA17_Chr7g0254981 60.000 55 22 0 144 198 52 106 1.41e-14 73.6
Msa0343410 MtrunA17_Chr3g0131371 43.878 98 21 1 355 418 305 402 1.63e-14 75.5
Msa0343410 MtrunA17_Chr1g0175091 44.186 86 47 1 132 217 249 333 3.84e-14 73.9
Msa0343410 MtrunA17_Chr2g0291021 61.818 55 21 0 144 198 51 105 3.98e-14 73.2
Msa0343410 MtrunA17_Chr2g0310011 54.098 61 28 0 143 203 36 96 5.91e-14 72.8
Msa0343410 MtrunA17_Chr8g0356501 57.143 56 24 0 143 198 38 93 5.95e-14 72.8
Msa0343410 MtrunA17_Chr1g0175071 36.641 131 71 4 92 216 129 253 8.88e-14 72.0
Msa0343410 MtrunA17_Chr6g0461641 46.753 77 35 1 143 219 43 113 9.16e-14 72.4
Msa0343410 MtrunA17_Chr2g0321461 45.455 88 41 2 143 230 46 126 1.18e-13 72.0
Msa0343410 MtrunA17_Chr5g0417521 50.877 57 28 0 143 199 16 72 3.35e-13 70.5
Msa0343410 MtrunA17_Chr4g0042451 52.632 57 27 0 143 199 18 74 5.95e-13 69.7
Msa0343410 MtrunA17_Chr1g0175081 45.455 66 36 0 144 209 24 89 1.23e-12 63.9
Msa0343410 MtrunA17_Chr7g0242521 55.172 58 23 1 144 198 15 72 9.53e-12 64.7
Msa0343410 MtrunA17_Chr4g0062921 39.048 105 59 1 134 233 227 331 2.31e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0343410 AT5G42630.1 47.176 301 111 9 21 316 17 274 1.09e-64 209
Msa0343410 AT5G42630.2 52.679 224 73 6 21 244 17 207 5.22e-53 177
Msa0343410 AT1G32240.2 61.290 124 27 3 85 208 177 279 7.36e-39 144
Msa0343410 AT1G32240.1 61.290 124 27 3 85 208 177 279 1.48e-38 143
Msa0343410 AT5G16560.1 48.438 192 70 8 136 302 213 400 4.32e-36 137
Msa0343410 AT4G17695.1 82.192 73 13 0 136 208 158 230 6.66e-35 132
Msa0343410 AT1G14600.1 57.500 80 32 1 123 200 2 81 1.03e-20 91.3
Msa0343410 AT2G42660.1 53.571 84 37 1 131 212 37 120 1.43e-20 90.9
Msa0343410 AT2G02060.2 60.870 69 25 1 129 195 14 82 5.15e-19 86.7
Msa0343410 AT2G02060.1 60.870 69 25 1 129 195 14 82 5.15e-19 86.7
Msa0343410 AT2G38300.1 58.824 68 28 0 141 208 53 120 7.69e-19 87.4
Msa0343410 AT4G04605.1 58.209 67 27 1 132 198 5 70 2.02e-18 84.0
Msa0343410 AT2G40260.1 54.217 83 37 1 127 209 68 149 2.13e-18 87.0
Msa0343410 AT4G04580.1 55.738 61 27 0 143 203 15 75 7.71e-17 78.2
Msa0343410 AT4G04555.1 52.941 68 31 1 131 198 4 70 9.98e-17 75.9
Msa0343410 AT5G29000.4 52.564 78 36 1 144 221 233 309 2.32e-16 79.7
Msa0343410 AT5G45580.1 66.038 53 18 0 143 195 8 60 4.85e-16 78.2
Msa0343410 AT5G45580.2 66.038 53 18 0 143 195 24 76 5.62e-16 78.2
Msa0343410 AT4G28610.1 65.455 55 19 0 144 198 227 281 1.04e-15 79.0
Msa0343410 AT3G04450.3 63.636 55 20 0 144 198 240 294 1.38e-15 77.4
Msa0343410 AT5G29000.1 50.667 75 37 0 144 218 190 264 1.51e-15 78.2
Msa0343410 AT5G29000.3 50.667 75 37 0 144 218 190 264 1.51e-15 78.2
Msa0343410 AT5G29000.2 50.667 75 37 0 144 218 233 307 2.15e-15 78.2
Msa0343410 AT3G04450.4 63.636 55 20 0 144 198 200 254 2.33e-15 77.8
Msa0343410 AT3G04450.2 63.636 55 20 0 144 198 200 254 2.33e-15 77.8
Msa0343410 AT3G04450.1 63.636 55 20 0 144 198 240 294 2.76e-15 77.8
Msa0343410 AT3G12730.1 55.385 65 29 0 143 207 24 88 4.07e-15 75.1
Msa0343410 AT5G06800.3 31.977 172 101 3 38 209 104 259 5.74e-15 75.5
Msa0343410 AT3G24120.2 52.308 65 31 0 143 207 42 106 1.86e-14 73.9
Msa0343410 AT3G24120.1 52.308 65 31 0 143 207 42 106 1.87e-14 73.9
Msa0343410 AT2G01060.1 46.591 88 34 2 144 218 17 104 1.89e-14 73.9
Msa0343410 AT3G04030.3 31.429 175 101 6 143 311 46 207 2.84e-14 74.3
Msa0343410 AT5G06800.1 33.728 169 96 4 38 206 104 256 3.93e-14 73.9
Msa0343410 AT3G13040.3 63.636 55 20 0 144 198 243 297 3.99e-14 74.3
Msa0343410 AT3G13040.1 63.636 55 20 0 144 198 243 297 3.99e-14 74.3
Msa0343410 AT3G13040.2 63.636 55 20 0 144 198 243 297 3.99e-14 74.3
Msa0343410 AT3G04030.1 41.748 103 52 4 143 240 46 145 5.02e-14 73.6
Msa0343410 AT4G13640.1 50.769 65 32 0 143 207 38 102 5.55e-14 72.4
Msa0343410 AT4G13640.2 50.769 65 32 0 143 207 38 102 5.95e-14 72.4
Msa0343410 AT1G79430.2 55.000 60 27 0 143 202 35 94 7.90e-14 72.8
Msa0343410 AT2G20400.1 63.636 55 20 0 144 198 233 287 1.24e-13 72.4
Msa0343410 AT2G20400.2 63.636 55 20 0 144 198 233 287 1.26e-13 72.4
Msa0343410 AT5G06800.2 33.735 166 94 4 38 203 104 253 1.60e-13 72.0
Msa0343410 AT2G06020.1 47.222 72 38 0 144 215 88 159 1.95e-13 71.2
Msa0343410 AT5G18240.2 53.571 56 26 0 143 198 46 101 5.21e-13 70.5
Msa0343410 AT5G18240.3 53.571 56 26 0 143 198 46 101 5.21e-13 70.5
Msa0343410 AT5G18240.5 53.571 56 26 0 143 198 46 101 5.64e-13 70.5
Msa0343410 AT5G18240.1 53.571 56 26 0 143 198 46 101 5.80e-13 70.5
Msa0343410 AT5G18240.4 53.571 56 26 0 143 198 46 101 5.80e-13 70.5
Msa0343410 AT1G69580.2 50.877 57 28 0 143 199 35 91 6.15e-12 67.0
Msa0343410 AT1G69580.1 50.877 57 28 0 143 199 35 91 6.17e-12 67.0
Msa0343410 AT3G04030.2 30.857 175 101 7 143 311 46 206 8.04e-12 67.0

Find 128 sgRNAs with CRISPR-Local

Find 313 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAACTCTAACACAGATTT+TGG 0.155756 3_1:+1505211 None:intergenic
GAGAAAGTTATATAATTATT+AGG 0.158707 3_1:+1506001 None:intergenic
TCACACTTGGAAGGCCTAAT+TGG 0.204416 3_1:-1503025 Msa0343410:CDS
GTTCACGCTGTTCAACTTCT+TGG 0.243560 3_1:-1505513 Msa0343410:CDS
GAGCGAAAAGTTAGTGAAAA+AGG 0.246504 3_1:+1506349 None:intergenic
TTTGTATTTGTCTCTATTGA+TGG 0.275353 3_1:+1503322 None:intergenic
TAGTGGTGGTTATTCGGTTC+GGG 0.280945 3_1:-1501927 Msa0343410:CDS
AGAATACGTCAAACCAATTT+CGG 0.281284 3_1:+1503282 None:intergenic
GTTGCCAATGAAGGATAATT+TGG 0.302200 3_1:-1501783 Msa0343410:CDS
TGAAGTGGTTGAGGTAAATT+TGG 0.306777 3_1:+1504582 None:intergenic
GGCGTCATCGGTTGTGGACT+TGG 0.318830 3_1:-1502040 Msa0343410:CDS
GTTGAACAGCGTGAACAAAA+TGG 0.323557 3_1:+1505520 None:intergenic
CTTAAATCAATTACCCTAGT+TGG 0.324560 3_1:-1506176 Msa0343410:five_prime_UTR
CGAAATACAAGAGTCGTTAA+TGG 0.332750 3_1:-1505597 Msa0343410:CDS
GGTGGTGGATATATGCGATT+TGG 0.333865 3_1:-1502093 Msa0343410:CDS
GTTGTAGTCCATCTCATTCT+TGG 0.337367 3_1:+1505552 None:intergenic
CACACTTGGAAGGCCTAATT+GGG 0.339173 3_1:-1503024 Msa0343410:CDS
GTGGTGGATATATGCGATTT+GGG 0.339889 3_1:-1502092 Msa0343410:CDS
AGAAAGTTATATAATTATTA+GGG 0.344221 3_1:+1506002 None:intergenic
CCTAGTTGGATCCTACTAAA+AGG 0.346339 3_1:-1506162 Msa0343410:five_prime_UTR
CACTTTCAACCTCACATCTA+TGG 0.348750 3_1:-1505633 Msa0343410:CDS
AGGTCCTAGTGGTGGTTATT+CGG 0.351140 3_1:-1501933 Msa0343410:CDS
AGTGTAGTACTAGTTATTTA+TGG 0.355108 3_1:+1506374 None:intergenic
TAAATTAATTCAGGACATCT+TGG 0.385795 3_1:-1503348 Msa0343410:intron
ATTCAATCAAATCAAGGTTT+CGG 0.389652 3_1:-1502114 Msa0343410:CDS
CTAGTGGTGGTTATTCGGTT+CGG 0.405452 3_1:-1501928 Msa0343410:CDS
ACCACCAAATTATCCTTCAT+TGG 0.412662 3_1:+1501779 None:intergenic
ACACGTCAAGAGTCACTTAC+AGG 0.413830 3_1:-1505164 Msa0343410:intron
GAAGACTTATGTTTAAAGAT+AGG 0.416511 3_1:+1505913 None:intergenic
GGGAGGAAGGAGAAACAGCC+TGG 0.416718 3_1:-1502067 Msa0343410:CDS
GGGAATGGCGTCATCGGTTG+TGG 0.425680 3_1:-1502046 Msa0343410:CDS
ATTAATATTGTTCCTTTGCA+TGG 0.427276 3_1:-1504630 Msa0343410:CDS
TGCGATTTGGGGTGGGAGGA+AGG 0.429304 3_1:-1502080 Msa0343410:CDS
TAGTGTCTGAACATGTCAAT+TGG 0.434133 3_1:+1503063 None:intergenic
CCAAAGCCTAATCTCAATGT+TGG 0.434197 3_1:+1505741 None:intergenic
TCAGAATCAGAAATATTAGA+AGG 0.435907 3_1:+1505891 None:intergenic
TGGATATATGCGATTTGGGG+TGG 0.437187 3_1:-1502088 Msa0343410:CDS
TTTAGTATTCAATCAAATCA+AGG 0.446651 3_1:-1502120 Msa0343410:intron
CTACATATCAATGGCATTGG+AGG 0.449688 3_1:-1501958 Msa0343410:CDS
GTGAAGACCACTGACAAATC+AGG 0.457613 3_1:-1504880 Msa0343410:CDS
CACGCTGTTCAACTTCTTGG+TGG 0.460230 3_1:-1505510 Msa0343410:CDS
CCAACATTGAGATTAGGCTT+TGG 0.462514 3_1:-1505741 Msa0343410:CDS
AGTGACTCTTGACGTGTGCT+AGG 0.470529 3_1:+1505170 None:intergenic
TTGAACAGCGTGAACAAAAT+GGG 0.471767 3_1:+1505521 None:intergenic
TTTGACGTATTCTAATTTGA+AGG 0.475463 3_1:-1503272 Msa0343410:CDS
CAAAGCCTAATCTCAATGTT+GGG 0.475579 3_1:+1505742 None:intergenic
AGGAAGGAATGAAGGAAGGA+AGG 0.477194 3_1:+1506057 None:intergenic
ATAATATTCCTGTATAGATA+AGG 0.478182 3_1:-1506513 None:intergenic
CGTGAACAAAATGGGAATGA+AGG 0.478451 3_1:+1505529 None:intergenic
CAACCGATGACGCCATTCCC+AGG 0.481543 3_1:+1502049 None:intergenic
TCGGAGTAGGTTGCCAATGA+AGG 0.482197 3_1:-1501792 Msa0343410:CDS
GGATATATGCGATTTGGGGT+GGG 0.484530 3_1:-1502087 Msa0343410:CDS
TCAAATCAAGGTTTCGGTGG+TGG 0.486671 3_1:-1502108 Msa0343410:CDS
TATCAATGGCATTGGAGGCT+AGG 0.488885 3_1:-1501953 Msa0343410:CDS
ATTCTACATATCAATGGCAT+TGG 0.491548 3_1:-1501961 Msa0343410:CDS
TTGTATTTCGCTTGAAATCG+CGG 0.491941 3_1:+1505610 None:intergenic
CAGCCTGGGAATGGCGTCAT+CGG 0.493040 3_1:-1502052 Msa0343410:CDS
ATTTAAACAGGTGAAGAGGT+TGG 0.494559 3_1:-1503093 Msa0343410:intron
CATATATTATCATTATAAAG+TGG 0.498559 3_1:+1505849 None:intergenic
CTTATGTTTAAAGATAGGTC+TGG 0.507017 3_1:+1505918 None:intergenic
CTTGAAGACTTCTTCGGAGT+AGG 0.508825 3_1:-1501805 Msa0343410:intron
AGTGTCTGAACATGTCAATT+GGG 0.509793 3_1:+1503064 None:intergenic
CGTGACCCAACATTGAGATT+AGG 0.510703 3_1:-1505747 Msa0343410:CDS
AATGAAGGAAGGAAGGAAGA+GGG 0.515503 3_1:+1506064 None:intergenic
GAATGAAGGAAGGAAGGAAG+AGG 0.518946 3_1:+1506063 None:intergenic
GAGAAGGAATGAATGAATGA+AGG 0.522148 3_1:+1506037 None:intergenic
GCGTCATCGGTTGTGGACTT+GGG 0.523950 3_1:-1502039 Msa0343410:CDS
TTGCACAGAGAGAGAAGCTA+GGG 0.526968 3_1:+1506450 None:intergenic
TCGGTTGTGGACTTGGGAGG+AGG 0.527122 3_1:-1502033 Msa0343410:CDS
AGCATAATTCTACATATCAA+TGG 0.529809 3_1:-1501967 Msa0343410:CDS
ATGAATGAAGGAAGGAATGA+AGG 0.532663 3_1:+1506049 None:intergenic
ACTAAGTGACTAGTAGCCTC+TGG 0.533578 3_1:-1506241 Msa0343410:five_prime_UTR
AAGGAGAAACAGCCTGGGAA+TGG 0.545633 3_1:-1502061 Msa0343410:CDS
AACCACTTCAAAATTCACTT+AGG 0.547130 3_1:-1504569 Msa0343410:intron
TTCCTGTATAGATAAGGTAA+AGG 0.548917 3_1:-1506507 None:intergenic
ACTTAGAATTCACACTTGGA+AGG 0.551628 3_1:-1503034 Msa0343410:CDS
ACGTTGATGAGGATAGATGA+AGG 0.553867 3_1:+1505767 None:intergenic
ATGAAGGAAGGAATGAAGGA+AGG 0.557486 3_1:+1506053 None:intergenic
CTAGTTATTTATGGAAGCTG+TGG 0.558627 3_1:+1506383 None:intergenic
TCATCGGTTGTGGACTTGGG+AGG 0.558682 3_1:-1502036 Msa0343410:CDS
ACCTGCTCCTGATTTGTCAG+TGG 0.561571 3_1:+1504873 None:intergenic
ACCACTGACAAATCAGGAGC+AGG 0.567981 3_1:-1504874 Msa0343410:intron
AGGAATGAATGAATGAAGGA+AGG 0.571977 3_1:+1506041 None:intergenic
TACTATTTAAACAGGTGAAG+AGG 0.572272 3_1:-1503097 Msa0343410:intron
AGGGTATAGAGTACTTGAGA+AGG 0.577363 3_1:+1506021 None:intergenic
TGAGATAATATTAGTAGCAG+TGG 0.579182 3_1:+1506410 None:intergenic
TTCGAGGTATGTGTGTGATG+AGG 0.579465 3_1:+1506136 None:intergenic
CAGTTATTCATGACTAGGTG+TGG 0.582984 3_1:-1501731 Msa0343410:CDS
AAGGAACCTCAGTACTCCCC+AGG 0.587521 3_1:-1506488 Msa0343410:five_prime_UTR
CATTGGAGGCTAGGTCCTAG+TGG 0.587931 3_1:-1501944 Msa0343410:CDS
CACAGAGAGAGAAGCTAGGG+GGG 0.592176 3_1:+1506453 None:intergenic
TTTGCACAGAGAGAGAAGCT+AGG 0.592920 3_1:+1506449 None:intergenic
GATAGGTCTGGTTCTAACAA+AGG 0.593492 3_1:+1505930 None:intergenic
GCCAATGAAGGATAATTTGG+TGG 0.595052 3_1:-1501780 Msa0343410:CDS
ACTTCTGATTCAGCTAGTAG+TGG 0.595408 3_1:-1505813 Msa0343410:CDS
AGATGTGAGGTTGAAAGTGT+TGG 0.598997 3_1:+1505637 None:intergenic
TATATGCGATTTGGGGTGGG+AGG 0.599573 3_1:-1502084 Msa0343410:CDS
TTAGAGCTCCAAGAATGAGA+TGG 0.601023 3_1:-1505560 Msa0343410:CDS
GTGACTCTTGACGTGTGCTA+GGG 0.602003 3_1:+1505171 None:intergenic
CGAACCGAATAACCACCACT+AGG 0.602895 3_1:+1501929 None:intergenic
ATTTCTGATTCTGAACCCAA+AGG 0.603069 3_1:-1505882 Msa0343410:CDS
AGTGGTGGTTATTCGGTTCG+GGG 0.605823 3_1:-1501926 Msa0343410:CDS
CAATCAAATCAAGGTTTCGG+TGG 0.607198 3_1:-1502111 Msa0343410:CDS
TTTGAAGGAAAATGATACCA+TGG 0.610022 3_1:-1503257 Msa0343410:intron
CGTTGATGAGGATAGATGAA+GGG 0.610120 3_1:+1505768 None:intergenic
ACAATCAGTTATTCATGACT+AGG 0.611201 3_1:-1501736 Msa0343410:CDS
GTGAACAAAATGGGAATGAA+GGG 0.613934 3_1:+1505530 None:intergenic
CTTGCACTTGATGACGATGA+AGG 0.615738 3_1:+1505679 None:intergenic
CTTCATCGTCATCAAGTGCA+AGG 0.616119 3_1:-1505678 Msa0343410:CDS
AATGTTGGGTCACGTTGATG+AGG 0.616823 3_1:+1505756 None:intergenic
TTATTCATGACTAGGTGTGG+AGG 0.630451 3_1:-1501728 Msa0343410:CDS
GAGGAATTAGCTCCATGCAA+AGG 0.631962 3_1:+1504618 None:intergenic
ATTGACTTAGAATTCACACT+TGG 0.638776 3_1:-1503038 Msa0343410:CDS
AATGGGATACTGCAGACACA+AGG 0.640188 3_1:-1504654 Msa0343410:CDS
AGGTGATGATTATGATGATG+TGG 0.640253 3_1:+1505699 None:intergenic
TGGTGGATATATGCGATTTG+GGG 0.643720 3_1:-1502091 Msa0343410:CDS
ATTTGGTCTCTCATCAGCTG+AGG 0.653148 3_1:+1504599 None:intergenic
GGAGGAAGGAGAAACAGCCT+GGG 0.654032 3_1:-1502066 Msa0343410:CDS
ACACTTGGAAGGCCTAATTG+GGG 0.657474 3_1:-1503023 Msa0343410:CDS
ATTCTCTTGATGATTCAGCA+TGG 0.658556 3_1:+1502994 None:intergenic
GCACAGAGAGAGAAGCTAGG+GGG 0.669095 3_1:+1506452 None:intergenic
TGGAGGCTAGGTCCTAGTGG+TGG 0.669115 3_1:-1501941 Msa0343410:CDS
GTTAGAGTTAATGAATGTGA+AGG 0.671020 3_1:-1505200 Msa0343410:CDS
ATGGGATACTGCAGACACAA+GGG 0.690336 3_1:-1504653 Msa0343410:CDS
AAATCGCGGCCATAGATGTG+AGG 0.691470 3_1:+1505624 None:intergenic
AGAATGCCTGGGGAGTACTG+AGG 0.708268 3_1:+1506482 None:intergenic
TGCACAGAGAGAGAAGCTAG+GGG 0.716432 3_1:+1506451 None:intergenic
GGGGTGAGAGAGAATGCCTG+GGG 0.733272 3_1:+1506472 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAGTTATATAATTATTA+GGG + chr3_1:1502190-1502209 None:intergenic 10.0%
!!! CATTTATTTATAAACTTTTA+AGG - chr3_1:1504323-1504342 Msa0343410:intron 10.0%
!!! TTTATTTATAAACTTTTAAG+GGG - chr3_1:1504325-1504344 Msa0343410:intron 10.0%
!! GAGAAAGTTATATAATTATT+AGG + chr3_1:1502191-1502210 None:intergenic 15.0%
!! CATATATTATCATTATAAAG+TGG + chr3_1:1502343-1502362 None:intergenic 15.0%
!!! TTTTTCCTTATATTTTGTTA+TGG + chr3_1:1502855-1502874 None:intergenic 15.0%
!!! AAGGAAGTATAATATAATTA+TGG - chr3_1:1502914-1502933 Msa0343410:intron 15.0%
!! AAATAATTAAAAGGTGAAAA+TGG + chr3_1:1503107-1503126 None:intergenic 15.0%
!! TTTGTCAGAAAATAATTAAA+AGG + chr3_1:1503116-1503135 None:intergenic 15.0%
!!! TATATTAATCTTTAACTTTG+TGG - chr3_1:1503223-1503242 Msa0343410:intron 15.0%
!!! TTTTTATTATTTTTCATGCT+TGG - chr3_1:1503263-1503282 Msa0343410:CDS 15.0%
!!! TAAACTTTTTACTACATATT+GGG + chr3_1:1504017-1504036 None:intergenic 15.0%
!! GAAAATAAGAGTAAAAAAAA+AGG + chr3_1:1504109-1504128 None:intergenic 15.0%
!!! CTAAATTATTTTTTTCAAGA+AGG - chr3_1:1504430-1504449 Msa0343410:intron 15.0%
!!! AATTTAAAGCAACTAAAAAA+TGG + chr3_1:1504783-1504802 None:intergenic 15.0%
!! TTCACTTTATAAATTAATTC+AGG - chr3_1:1504832-1504851 Msa0343410:intron 15.0%
!! TAACAATAAAAGAAAATAGA+AGG - chr3_1:1505465-1505484 Msa0343410:intron 15.0%
!!! AACATCAATCTTTTATTTTT+TGG + chr3_1:1505663-1505682 None:intergenic 15.0%
!! AAAAAATAAAAGATTGATGT+TGG - chr3_1:1505662-1505681 Msa0343410:CDS 15.0%
!!! GAAAATAAAGTATGCATTTT+AGG + chr3_1:1502238-1502257 None:intergenic 20.0%
!! ATATTATCATTTCTTCATCA+TGG - chr3_1:1502818-1502837 Msa0343410:intron 20.0%
!!! TTTGCTTAACTTTTATTACA+AGG - chr3_1:1502895-1502914 Msa0343410:intron 20.0%
!! TTAGATCTTTAGTTAGTATT+TGG - chr3_1:1503403-1503422 Msa0343410:intron 20.0%
!!! CTAAACTTTTTACTACATAT+TGG + chr3_1:1504018-1504037 None:intergenic 20.0%
!!! TTTAGAGTGAAAAAAATAGT+GGG + chr3_1:1504415-1504434 None:intergenic 20.0%
!!! ATTTAGAGTGAAAAAAATAG+TGG + chr3_1:1504416-1504435 None:intergenic 20.0%
!! CAAATATATACAGTTCAAAA+CGG + chr3_1:1504692-1504711 None:intergenic 20.0%
!! AATGAGAAATTAAATACAGA+AGG + chr3_1:1504813-1504832 None:intergenic 20.0%
!! TTTGTGTATACTATTTAAAC+AGG - chr3_1:1505084-1505103 Msa0343410:intron 20.0%
!! GATATATTAAATCATTCACA+TGG + chr3_1:1505322-1505341 None:intergenic 20.0%
!! AAAGTTAACAAAAAAGGTTA+GGG + chr3_1:1505926-1505945 None:intergenic 20.0%
!! TAATGGAAAGTTAACAAAAA+AGG + chr3_1:1505932-1505951 None:intergenic 20.0%
!!! TTTGTTTGACAATGTTATTT+TGG + chr3_1:1505992-1506011 None:intergenic 20.0%
!! TTTAGTATTCAATCAAATCA+AGG - chr3_1:1506069-1506088 Msa0343410:five_prime_UTR 20.0%
! AGTGTAGTACTAGTTATTTA+TGG + chr3_1:1501818-1501837 None:intergenic 25.0%
!!! AAAAGATCAGAGTTTTTTTG+GGG + chr3_1:1501876-1501895 None:intergenic 25.0%
!!! GAAAAGATCAGAGTTTTTTT+GGG + chr3_1:1501877-1501896 None:intergenic 25.0%
!!! AGAAAAGATCAGAGTTTTTT+TGG + chr3_1:1501878-1501897 None:intergenic 25.0%
!!! AGATGATTTAATTTTTCCAG+AGG + chr3_1:1501967-1501986 None:intergenic 25.0%
! GAAGACTTATGTTTAAAGAT+AGG + chr3_1:1502279-1502298 None:intergenic 25.0%
! TCAGAATCAGAAATATTAGA+AGG + chr3_1:1502301-1502320 None:intergenic 25.0%
! CATGTCCATAACAAAATATA+AGG - chr3_1:1502847-1502866 Msa0343410:intron 25.0%
!!! TAATTGTGTAATTAACTTGC+AGG - chr3_1:1502948-1502967 Msa0343410:intron 25.0%
!! ATTAACTCTAACACAGATTT+TGG + chr3_1:1502981-1503000 None:intergenic 25.0%
!! AATGAAATTTTGCAGGTAAT+GGG - chr3_1:1503518-1503537 Msa0343410:intron 25.0%
! ATTAATATTGTTCCTTTGCA+TGG - chr3_1:1503559-1503578 Msa0343410:intron 25.0%
! TAAAAGCTATGTTAACGTAT+AGG - chr3_1:1503709-1503728 Msa0343410:intron 25.0%
!!! ATTTTGACAAAAAATGCCTA+GGG - chr3_1:1503897-1503916 Msa0343410:intron 25.0%
!!! GTAGTAAAAAGTTTAGCTTT+TGG - chr3_1:1504022-1504041 Msa0343410:intron 25.0%
!! CTCACAATTTTTGTGATTAA+TGG + chr3_1:1504057-1504076 None:intergenic 25.0%
! ATCACAAAAATTGTGAGATT+TGG - chr3_1:1504060-1504079 Msa0343410:intron 25.0%
! TTGTGTAATTATAGACTTTG+AGG + chr3_1:1504135-1504154 None:intergenic 25.0%
! CATTTATTACTTAATAAGCC+AGG + chr3_1:1504302-1504321 None:intergenic 25.0%
! CAAAATCGACATATTAATTG+TGG - chr3_1:1504354-1504373 Msa0343410:intron 25.0%
!! ATTGTTGGCAATCTTAATTT+TGG + chr3_1:1504539-1504558 None:intergenic 25.0%
!!! GATGTCATGCAATATTTTAA+CGG + chr3_1:1504632-1504651 None:intergenic 25.0%
!!! CGTTTTGAACTGTATATATT+TGG - chr3_1:1504690-1504709 Msa0343410:intron 25.0%
!! GAACTGTATATATTTGGAAT+TGG - chr3_1:1504696-1504715 Msa0343410:intron 25.0%
! TGGAATTGGAATTAGTATTT+AGG - chr3_1:1504710-1504729 Msa0343410:intron 25.0%
! TAAATTAATTCAGGACATCT+TGG - chr3_1:1504841-1504860 Msa0343410:intron 25.0%
! TTTGTATTTGTCTCTATTGA+TGG + chr3_1:1504870-1504889 None:intergenic 25.0%
! TTTGACGTATTCTAATTTGA+AGG - chr3_1:1504917-1504936 Msa0343410:intron 25.0%
!!! AAGTTTTGGGACATATATAT+AGG - chr3_1:1504956-1504975 Msa0343410:intron 25.0%
!!! AGTTTTGGGACATATATATA+GGG - chr3_1:1504957-1504976 Msa0343410:intron 25.0%
! TACACTATTCATTAATGACA+AGG + chr3_1:1505276-1505295 None:intergenic 25.0%
!! TTTTGTATGAAAGTGAAATG+AGG - chr3_1:1505350-1505369 Msa0343410:intron 25.0%
! AAAGTGAAATGAGGAATATT+GGG - chr3_1:1505359-1505378 Msa0343410:intron 25.0%
! GACTAGATACTTCAATAATA+TGG + chr3_1:1505761-1505780 None:intergenic 25.0%
! AAGTTAACAAAAAAGGTTAG+GGG + chr3_1:1505925-1505944 None:intergenic 25.0%
! GAAAGTTAACAAAAAAGGTT+AGG + chr3_1:1505927-1505946 None:intergenic 25.0%
! ACATTGTCAAACAAAACATT+AGG - chr3_1:1505997-1506016 Msa0343410:exon 25.0%
! CATTGTCAAACAAAACATTA+GGG - chr3_1:1505998-1506017 Msa0343410:exon 25.0%
! AATACTAAAAAATGAGACCA+CGG + chr3_1:1506058-1506077 None:intergenic 25.0%
! ATTCAATCAAATCAAGGTTT+CGG - chr3_1:1506075-1506094 Msa0343410:five_prime_UTR 25.0%
! AGCATAATTCTACATATCAA+TGG - chr3_1:1506222-1506241 Msa0343410:five_prime_UTR 25.0%
! GCAAAAATAGAAACATTCAA+GGG + chr3_1:1506365-1506384 None:intergenic 25.0%
! AGCAAAAATAGAAACATTCA+AGG + chr3_1:1506366-1506385 None:intergenic 25.0%
TGAGATAATATTAGTAGCAG+TGG + chr3_1:1501782-1501801 None:intergenic 30.0%
AGCGAAAAGTTAGTGAAAAA+GGG + chr3_1:1501842-1501861 None:intergenic 30.0%
CTTAAATCAATTACCCTAGT+TGG - chr3_1:1502013-1502032 Msa0343410:intron 30.0%
CTTATGTTTAAAGATAGGTC+TGG + chr3_1:1502274-1502293 None:intergenic 30.0%
!!! AGTGGTTTTGTTATTCCTTT+GGG + chr3_1:1502325-1502344 None:intergenic 30.0%
!!! AAGTGGTTTTGTTATTCCTT+TGG + chr3_1:1502326-1502345 None:intergenic 30.0%
AAGTGCTCATGAAGAATAAT+AGG + chr3_1:1502730-1502749 None:intergenic 30.0%
GTTAGAGTTAATGAATGTGA+AGG - chr3_1:1502989-1503008 Msa0343410:CDS 30.0%
CTCATTAAACTGTAAGACTA+TGG + chr3_1:1503067-1503086 None:intergenic 30.0%
! TAAGAGCAATGAAATTTTGC+AGG - chr3_1:1503511-1503530 Msa0343410:intron 30.0%
! CAATGAAATTTTGCAGGTAA+TGG - chr3_1:1503517-1503536 Msa0343410:intron 30.0%
AACCACTTCAAAATTCACTT+AGG - chr3_1:1503620-1503639 Msa0343410:intron 30.0%
!! TACCTAAGTGAATTTTGAAG+TGG + chr3_1:1503625-1503644 None:intergenic 30.0%
!! GATTTTGACAAAAAATGCCT+AGG - chr3_1:1503896-1503915 Msa0343410:intron 30.0%
!! TAATCCAAAAGCATCGTTAA+GGG + chr3_1:1503961-1503980 None:intergenic 30.0%
ATATTGTTCAATGTGCAAAG+AGG + chr3_1:1504186-1504205 None:intergenic 30.0%
! TGTTTTATCCATCACTCTTT+AGG - chr3_1:1504498-1504517 Msa0343410:intron 30.0%
TAGAAAGGAGAAAACATTGT+TGG + chr3_1:1504554-1504573 None:intergenic 30.0%
!! CCAAATGTTTCAATTTGCTA+AGG + chr3_1:1504602-1504621 None:intergenic 30.0%
CCTTAGCAAATTGAAACATT+TGG - chr3_1:1504599-1504618 Msa0343410:CDS 30.0%
! GGAATTAGTATTTAGGACTT+TGG - chr3_1:1504717-1504736 Msa0343410:intron 30.0%
!!! AGGACTTTGGATTTTGAAAT+TGG - chr3_1:1504730-1504749 Msa0343410:intron 30.0%
GAGTACTAGAAAACTAGAAT+GGG - chr3_1:1504752-1504771 Msa0343410:intron 30.0%
ACTGAAGAAAAATCCGAAAT+TGG - chr3_1:1504894-1504913 Msa0343410:CDS 30.0%
AGAATACGTCAAACCAATTT+CGG + chr3_1:1504910-1504929 None:intergenic 30.0%
TTTGAAGGAAAATGATACCA+TGG - chr3_1:1504932-1504951 Msa0343410:intron 30.0%
! AATGATACCATGGTAAGTTT+TGG - chr3_1:1504942-1504961 Msa0343410:intron 30.0%
! ATGATACCATGGTAAGTTTT+GGG - chr3_1:1504943-1504962 Msa0343410:intron 30.0%
TACTATTTAAACAGGTGAAG+AGG - chr3_1:1505092-1505111 Msa0343410:intron 30.0%
! ATTGACTTAGAATTCACACT+TGG - chr3_1:1505151-1505170 Msa0343410:intron 30.0%
TAGTGTACTACTACATTACT+AGG - chr3_1:1505289-1505308 Msa0343410:intron 30.0%
GAAAGTGAAATGAGGAATAT+TGG - chr3_1:1505358-1505377 Msa0343410:intron 30.0%
! TTTTGCCTAACTAAAAGTCA+TGG + chr3_1:1505509-1505528 None:intergenic 30.0%
!! GACTTTTAGTTAGGCAAAAT+AGG - chr3_1:1505510-1505529 Msa0343410:CDS 30.0%
CACGGTTTAATGGTTTAATA+GGG + chr3_1:1506040-1506059 None:intergenic 30.0%
ATTCTACATATCAATGGCAT+TGG - chr3_1:1506228-1506247 Msa0343410:five_prime_UTR 30.0%
! ATGCTACTTCAGATTTCATT+TGG - chr3_1:1506327-1506346 Msa0343410:five_prime_UTR 30.0%
! TTTTTGCTTGAAGACTTCTT+CGG - chr3_1:1506378-1506397 Msa0343410:five_prime_UTR 30.0%
ACAATCAGTTATTCATGACT+AGG - chr3_1:1506453-1506472 Msa0343410:five_prime_UTR 30.0%
CTAGTTATTTATGGAAGCTG+TGG + chr3_1:1501809-1501828 None:intergenic 35.0%
GAGCGAAAAGTTAGTGAAAA+AGG + chr3_1:1501843-1501862 None:intergenic 35.0%
! CTTTTAGTAGGATCCAACTA+GGG + chr3_1:1502029-1502048 None:intergenic 35.0%
!! CATGATTTGCATTGTTTTCG+AGG + chr3_1:1502072-1502091 None:intergenic 35.0%
ATGAATGAAGGAAGGAATGA+AGG + chr3_1:1502143-1502162 None:intergenic 35.0%
AGGAATGAATGAATGAAGGA+AGG + chr3_1:1502151-1502170 None:intergenic 35.0%
GAGAAGGAATGAATGAATGA+AGG + chr3_1:1502155-1502174 None:intergenic 35.0%
ATTTCTGATTCTGAACCCAA+AGG - chr3_1:1502307-1502326 Msa0343410:intron 35.0%
! GATAGATGAAGGGATTTTCA+TGG + chr3_1:1502414-1502433 None:intergenic 35.0%
CAAAGCCTAATCTCAATGTT+GGG + chr3_1:1502450-1502469 None:intergenic 35.0%
! AGGTGATGATTATGATGATG+TGG + chr3_1:1502493-1502512 None:intergenic 35.0%
TTGTATTTCGCTTGAAATCG+CGG + chr3_1:1502582-1502601 None:intergenic 35.0%
CGAAATACAAGAGTCGTTAA+TGG - chr3_1:1502592-1502611 Msa0343410:intron 35.0%
GTGAACAAAATGGGAATGAA+GGG + chr3_1:1502662-1502681 None:intergenic 35.0%
TTGAACAGCGTGAACAAAAT+GGG + chr3_1:1502671-1502690 None:intergenic 35.0%
!! TAAGAGAAGTGTTCTAGTAG+TGG - chr3_1:1503150-1503169 Msa0343410:intron 35.0%
AGAAAGTAGAACAAGCACTA+GGG - chr3_1:1503173-1503192 Msa0343410:intron 35.0%
TGAAGTGGTTGAGGTAAATT+TGG + chr3_1:1503610-1503629 None:intergenic 35.0%
!!! AGTGAATTTTGAAGTGGTTG+AGG + chr3_1:1503619-1503638 None:intergenic 35.0%
AATAGCCCTGTGTTGAATAA+TGG + chr3_1:1503690-1503709 None:intergenic 35.0%
TCACACAAATGCTTTGTGTT+TGG - chr3_1:1503741-1503760 Msa0343410:intron 35.0%
! AAATGCCTAGGGCTTTTTAT+AGG - chr3_1:1503908-1503927 Msa0343410:intron 35.0%
ACATACCTATAAAAAGCCCT+AGG + chr3_1:1503916-1503935 None:intergenic 35.0%
! TAGGGCTTTTTATAGGTATG+TGG - chr3_1:1503915-1503934 Msa0343410:intron 35.0%
! AGGGCTTTTTATAGGTATGT+GGG - chr3_1:1503916-1503935 Msa0343410:intron 35.0%
!! GTAATCCAAAAGCATCGTTA+AGG + chr3_1:1503962-1503981 None:intergenic 35.0%
ATTTACTCTTTCCACAACCA+AGG + chr3_1:1504389-1504408 None:intergenic 35.0%
! AGAGTGAAAAAAATAGTGGG+TGG + chr3_1:1504412-1504431 None:intergenic 35.0%
CAATCATAGTGTACCTTAAG+AGG + chr3_1:1504461-1504480 None:intergenic 35.0%
ATCTTGAACCTAAAGAGTGA+TGG + chr3_1:1504509-1504528 None:intergenic 35.0%
!! CTCCTTTCTAGCTAATAATG+AGG - chr3_1:1504564-1504583 Msa0343410:intron 35.0%
GTCCTCATTATTAGCTAGAA+AGG + chr3_1:1504569-1504588 None:intergenic 35.0%
! TTCTAGCTAATAATGAGGAC+TGG - chr3_1:1504569-1504588 Msa0343410:intron 35.0%
! AGTTTGTGATTGGCTATTGA+AGG + chr3_1:1504659-1504678 None:intergenic 35.0%
! GGAGTACTAGAAAACTAGAA+TGG - chr3_1:1504751-1504770 Msa0343410:intron 35.0%
ATATGTCCCAAAACTTACCA+TGG + chr3_1:1504952-1504971 None:intergenic 35.0%
ATATATATAGGGCCAGAAAC+TGG - chr3_1:1504968-1504987 Msa0343410:intron 35.0%
ATTTAAACAGGTGAAGAGGT+TGG - chr3_1:1505096-1505115 Msa0343410:intron 35.0%
AGTGTCTGAACATGTCAATT+GGG + chr3_1:1505128-1505147 None:intergenic 35.0%
TAGTGTCTGAACATGTCAAT+TGG + chr3_1:1505129-1505148 None:intergenic 35.0%
ACTTAGAATTCACACTTGGA+AGG - chr3_1:1505155-1505174 Msa0343410:intron 35.0%
! ATTCTCTTGATGATTCAGCA+TGG + chr3_1:1505198-1505217 None:intergenic 35.0%
CTTGAGTCCAAAGAATTTCA+GGG - chr3_1:1505407-1505426 Msa0343410:intron 35.0%
!! ATGGACCATGACTTTTAGTT+AGG - chr3_1:1505501-1505520 Msa0343410:intron 35.0%
TCCAATATAAGGTCCCAAAT+GGG + chr3_1:1505538-1505557 None:intergenic 35.0%
TGTTATGATAGCTAGTACTG+TGG + chr3_1:1505581-1505600 None:intergenic 35.0%
CATATATGTAACGTTCCAAG+AGG - chr3_1:1505611-1505630 Msa0343410:CDS 35.0%
TCACGAGAATCTCTATATAG+AGG - chr3_1:1505706-1505725 Msa0343410:CDS 35.0%
TTCCACGCTTCTAACATATT+GGG + chr3_1:1505811-1505830 None:intergenic 35.0%
ATTCCACGCTTCTAACATAT+TGG + chr3_1:1505812-1505831 None:intergenic 35.0%
GGTTTGAAAACAATAGAGGA+GGG + chr3_1:1505891-1505910 None:intergenic 35.0%
TGGTTTGAAAACAATAGAGG+AGG + chr3_1:1505892-1505911 None:intergenic 35.0%
!! GGTTGGTTTGAAAACAATAG+AGG + chr3_1:1505895-1505914 None:intergenic 35.0%
TTAACAAAAAAGGTTAGGGG+AGG + chr3_1:1505922-1505941 None:intergenic 35.0%
CAAAACATTAGGGTTTGACA+TGG - chr3_1:1506008-1506027 Msa0343410:five_prime_UTR 35.0%
CCACGGTTTAATGGTTTAAT+AGG + chr3_1:1506041-1506060 None:intergenic 35.0%
CCTATTAAACCATTAAACCG+TGG - chr3_1:1506038-1506057 Msa0343410:five_prime_UTR 35.0%
AAAATGAGACCACGGTTTAA+TGG + chr3_1:1506050-1506069 None:intergenic 35.0%
GTTGCCAATGAAGGATAATT+TGG - chr3_1:1506406-1506425 Msa0343410:five_prime_UTR 35.0%
ACCACCAAATTATCCTTCAT+TGG + chr3_1:1506413-1506432 None:intergenic 35.0%
!!! GATCAGAGTTTTTTTGGGGA+TGG + chr3_1:1501872-1501891 None:intergenic 40.0%
! CCTTTTAGTAGGATCCAACT+AGG + chr3_1:1502030-1502049 None:intergenic 40.0%
CCTAGTTGGATCCTACTAAA+AGG - chr3_1:1502027-1502046 Msa0343410:intron 40.0%
! TGATGAGGTAGCCTTTTAGT+AGG + chr3_1:1502041-1502060 None:intergenic 40.0%
AATGAAGGAAGGAAGGAAGA+GGG + chr3_1:1502128-1502147 None:intergenic 40.0%
ATGAAGGAAGGAATGAAGGA+AGG + chr3_1:1502139-1502158 None:intergenic 40.0%
! AGGGTATAGAGTACTTGAGA+AGG + chr3_1:1502171-1502190 None:intergenic 40.0%
!! GATAGGTCTGGTTCTAACAA+AGG + chr3_1:1502262-1502281 None:intergenic 40.0%
ACTTCTGATTCAGCTAGTAG+TGG - chr3_1:1502376-1502395 Msa0343410:intron 40.0%
! CGTTGATGAGGATAGATGAA+GGG + chr3_1:1502424-1502443 None:intergenic 40.0%
! ACGTTGATGAGGATAGATGA+AGG + chr3_1:1502425-1502444 None:intergenic 40.0%
CCAAAGCCTAATCTCAATGT+TGG + chr3_1:1502451-1502470 None:intergenic 40.0%
CCAACATTGAGATTAGGCTT+TGG - chr3_1:1502448-1502467 Msa0343410:intron 40.0%
! AGATGTGAGGTTGAAAGTGT+TGG + chr3_1:1502555-1502574 None:intergenic 40.0%
CACTTTCAACCTCACATCTA+TGG - chr3_1:1502556-1502575 Msa0343410:intron 40.0%
TTAGAGCTCCAAGAATGAGA+TGG - chr3_1:1502629-1502648 Msa0343410:intron 40.0%
GTTGTAGTCCATCTCATTCT+TGG + chr3_1:1502640-1502659 None:intergenic 40.0%
CGTGAACAAAATGGGAATGA+AGG + chr3_1:1502663-1502682 None:intergenic 40.0%
GTTGAACAGCGTGAACAAAA+TGG + chr3_1:1502672-1502691 None:intergenic 40.0%
GAGAAAGTAGAACAAGCACT+AGG - chr3_1:1503172-1503191 Msa0343410:intron 40.0%
AACAAGCACTAGGGACAAAA+GGG - chr3_1:1503182-1503201 Msa0343410:intron 40.0%
TGAGCACCATTATTCAACAC+AGG - chr3_1:1503681-1503700 Msa0343410:intron 40.0%
GAGCACCATTATTCAACACA+GGG - chr3_1:1503682-1503701 Msa0343410:intron 40.0%
! GCTTTTTATAGGTATGTGGG+TGG - chr3_1:1503919-1503938 Msa0343410:intron 40.0%
!! AAGGGTATCTTACAAAGTCC+TGG - chr3_1:1504281-1504300 Msa0343410:intron 40.0%
! AATTGTGGTTTGTCCTTCCT+TGG - chr3_1:1504369-1504388 Msa0343410:intron 40.0%
CATAGTGTACCTTAAGAGGA+TGG + chr3_1:1504457-1504476 None:intergenic 40.0%
AATAGCCAATCACAAACTGC+TGG - chr3_1:1504661-1504680 Msa0343410:intron 40.0%
GCTTGAGTCCAAAGAATTTC+AGG - chr3_1:1505406-1505425 Msa0343410:intron 40.0%
GACAATGCCCTGAAATTCTT+TGG + chr3_1:1505417-1505436 None:intergenic 40.0%
GAAAATAGAAGGCCTCTTTC+AGG - chr3_1:1505476-1505495 Msa0343410:intron 40.0%
CCAATATAAGGTCCCAAATG+GGG + chr3_1:1505537-1505556 None:intergenic 40.0%
GTCCAATATAAGGTCCCAAA+TGG + chr3_1:1505539-1505558 None:intergenic 40.0%
! TTTGGGACCTTATATTGGAC+AGG - chr3_1:1505539-1505558 Msa0343410:CDS 40.0%
CGTGGAATTCGATTCTACAA+TGG - chr3_1:1505824-1505843 Msa0343410:CDS 40.0%
AAAAAGGTTAGGGGAGGTAA+TGG + chr3_1:1505916-1505935 None:intergenic 40.0%
AACATTAGGGTTTGACATGG+AGG - chr3_1:1506011-1506030 Msa0343410:five_prime_UTR 40.0%
CAATCAAATCAAGGTTTCGG+TGG - chr3_1:1506078-1506097 Msa0343410:five_prime_UTR 40.0%
!! GTGGTGGATATATGCGATTT+GGG - chr3_1:1506097-1506116 Msa0343410:five_prime_UTR 40.0%
! TGGTGGATATATGCGATTTG+GGG - chr3_1:1506098-1506117 Msa0343410:five_prime_UTR 40.0%
! CTACATATCAATGGCATTGG+AGG - chr3_1:1506231-1506250 Msa0343410:five_prime_UTR 40.0%
GCCAATGAAGGATAATTTGG+TGG - chr3_1:1506409-1506428 Msa0343410:five_prime_UTR 40.0%
CAGTTATTCATGACTAGGTG+TGG - chr3_1:1506458-1506477 Msa0343410:five_prime_UTR 40.0%
TTATTCATGACTAGGTGTGG+AGG - chr3_1:1506461-1506480 Msa0343410:five_prime_UTR 40.0%
TTGCACAGAGAGAGAAGCTA+GGG + chr3_1:1501742-1501761 None:intergenic 45.0%
TTTGCACAGAGAGAGAAGCT+AGG + chr3_1:1501743-1501762 None:intergenic 45.0%
!!! CAGAGTTTTTTTGGGGATGG+TGG + chr3_1:1501869-1501888 None:intergenic 45.0%
ACTAAGTGACTAGTAGCCTC+TGG - chr3_1:1501948-1501967 Msa0343410:CDS 45.0%
TTCGAGGTATGTGTGTGATG+AGG + chr3_1:1502056-1502075 None:intergenic 45.0%
GAATGAAGGAAGGAAGGAAG+AGG + chr3_1:1502129-1502148 None:intergenic 45.0%
AGGAAGGAATGAAGGAAGGA+AGG + chr3_1:1502135-1502154 None:intergenic 45.0%
AATGTTGGGTCACGTTGATG+AGG + chr3_1:1502436-1502455 None:intergenic 45.0%
CGTGACCCAACATTGAGATT+AGG - chr3_1:1502442-1502461 Msa0343410:intron 45.0%
!! CTTGCACTTGATGACGATGA+AGG + chr3_1:1502513-1502532 None:intergenic 45.0%
CTTCATCGTCATCAAGTGCA+AGG - chr3_1:1502511-1502530 Msa0343410:intron 45.0%
GTTCACGCTGTTCAACTTCT+TGG - chr3_1:1502676-1502695 Msa0343410:intron 45.0%
ACACGTCAAGAGTCACTTAC+AGG - chr3_1:1503025-1503044 Msa0343410:CDS 45.0%
GTCAAGAGTCACTTACAGGT+GGG - chr3_1:1503029-1503048 Msa0343410:CDS 45.0%
TCAAGAGTCACTTACAGGTG+GGG - chr3_1:1503030-1503049 Msa0343410:CDS 45.0%
GAACAAGCACTAGGGACAAA+AGG - chr3_1:1503181-1503200 Msa0343410:intron 45.0%
GTGAAGACCACTGACAAATC+AGG - chr3_1:1503309-1503328 Msa0343410:CDS 45.0%
AATGGGATACTGCAGACACA+AGG - chr3_1:1503535-1503554 Msa0343410:intron 45.0%
ATGGGATACTGCAGACACAA+GGG - chr3_1:1503536-1503555 Msa0343410:intron 45.0%
GAGGAATTAGCTCCATGCAA+AGG + chr3_1:1503574-1503593 None:intergenic 45.0%
ATTTGGTCTCTCATCAGCTG+AGG + chr3_1:1503593-1503612 None:intergenic 45.0%
! TGCTCCCTTAACGATGCTTT+TGG - chr3_1:1503954-1503973 Msa0343410:intron 45.0%
ACTCTTTCCACAACCAAGGA+AGG + chr3_1:1504385-1504404 None:intergenic 45.0%
CAAGAAGGACCATCCTCTTA+AGG - chr3_1:1504445-1504464 Msa0343410:intron 45.0%
CATAGCCAGCAGTTTGTGAT+TGG + chr3_1:1504669-1504688 None:intergenic 45.0%
CACATGCTAGATCCAGTTTC+TGG + chr3_1:1504983-1505002 None:intergenic 45.0%
CAGAAACTGGATCTAGCATG+TGG - chr3_1:1504981-1505000 Msa0343410:intron 45.0%
TCACACTTGGAAGGCCTAAT+TGG - chr3_1:1505164-1505183 Msa0343410:intron 45.0%
CACACTTGGAAGGCCTAATT+GGG - chr3_1:1505165-1505184 Msa0343410:CDS 45.0%
ACACTTGGAAGGCCTAATTG+GGG - chr3_1:1505166-1505185 Msa0343410:CDS 45.0%
! GCATGGTCTTTTCCCCAATT+AGG + chr3_1:1505181-1505200 None:intergenic 45.0%
AGAAGGCCTCTTTCAGGATA+TGG - chr3_1:1505482-1505501 Msa0343410:intron 45.0%
CATGGTCCATATCCTGAAAG+AGG + chr3_1:1505491-1505510 None:intergenic 45.0%
AGGCAAAATAGGACCCCATT+TGG - chr3_1:1505521-1505540 Msa0343410:CDS 45.0%
GGCAAAATAGGACCCCATTT+GGG - chr3_1:1505522-1505541 Msa0343410:CDS 45.0%
! CCCCATTTGGGACCTTATAT+TGG - chr3_1:1505534-1505553 Msa0343410:CDS 45.0%
GGACCTTATATTGGACAGGT+GGG - chr3_1:1505543-1505562 Msa0343410:CDS 45.0%
TGACCCACCTGTCCAATATA+AGG + chr3_1:1505549-1505568 None:intergenic 45.0%
TCCAAGAGGCTTGTAGATTG+AGG - chr3_1:1505625-1505644 Msa0343410:CDS 45.0%
ACCTCAATCTACAAGCCTCT+TGG + chr3_1:1505629-1505648 None:intergenic 45.0%
TGCCCAATATGTTAGAAGCG+TGG - chr3_1:1505806-1505825 Msa0343410:CDS 45.0%
TCAAATCAAGGTTTCGGTGG+TGG - chr3_1:1506081-1506100 Msa0343410:five_prime_UTR 45.0%
!! GGTGGTGGATATATGCGATT+TGG - chr3_1:1506096-1506115 Msa0343410:five_prime_UTR 45.0%
! TGGATATATGCGATTTGGGG+TGG - chr3_1:1506101-1506120 Msa0343410:five_prime_UTR 45.0%
! GGATATATGCGATTTGGGGT+GGG - chr3_1:1506102-1506121 Msa0343410:five_prime_UTR 45.0%
! TATCAATGGCATTGGAGGCT+AGG - chr3_1:1506236-1506255 Msa0343410:five_prime_UTR 45.0%
AGGTCCTAGTGGTGGTTATT+CGG - chr3_1:1506256-1506275 Msa0343410:five_prime_UTR 45.0%
CTAGTGGTGGTTATTCGGTT+CGG - chr3_1:1506261-1506280 Msa0343410:five_prime_UTR 45.0%
TAGTGGTGGTTATTCGGTTC+GGG - chr3_1:1506262-1506281 Msa0343410:five_prime_UTR 45.0%
CTTGAAGACTTCTTCGGAGT+AGG - chr3_1:1506384-1506403 Msa0343410:five_prime_UTR 45.0%
!!! TTACAAAATTAATTTTTTTA+AGG - chr3_1:1504262-1504281 Msa0343410:intron 5.0%
!!! TACAAAATTAATTTTTTTAA+GGG - chr3_1:1504263-1504282 Msa0343410:intron 5.0%
!!! ATTTATTTATAAACTTTTAA+GGG - chr3_1:1504324-1504343 Msa0343410:intron 5.0%
!!! AAAGATTATTTTAAATTTAA+TGG + chr3_1:1505949-1505968 None:intergenic 5.0%
TGCACAGAGAGAGAAGCTAG+GGG + chr3_1:1501741-1501760 None:intergenic 50.0%
AAATCGCGGCCATAGATGTG+AGG + chr3_1:1502568-1502587 None:intergenic 50.0%
CACGCTGTTCAACTTCTTGG+TGG - chr3_1:1502679-1502698 Msa0343410:intron 50.0%
GTGACTCTTGACGTGTGCTA+GGG + chr3_1:1503021-1503040 None:intergenic 50.0%
AGTGACTCTTGACGTGTGCT+AGG + chr3_1:1503022-1503041 None:intergenic 50.0%
CGTCAAGAGTCACTTACAGG+TGG - chr3_1:1503028-1503047 Msa0343410:CDS 50.0%
ACCACTGACAAATCAGGAGC+AGG - chr3_1:1503315-1503334 Msa0343410:CDS 50.0%
! ACCTGCTCCTGATTTGTCAG+TGG + chr3_1:1503319-1503338 None:intergenic 50.0%
GGTTTGTCCTTCCTTGGTTG+TGG - chr3_1:1504375-1504394 Msa0343410:intron 50.0%
GGGACCTTATATTGGACAGG+TGG - chr3_1:1505542-1505561 Msa0343410:CDS 50.0%
! AGGTTAGGGGAGGTAATGGT+TGG + chr3_1:1505912-1505931 None:intergenic 50.0%
! TATATGCGATTTGGGGTGGG+AGG - chr3_1:1506105-1506124 Msa0343410:five_prime_UTR 50.0%
AAGGAGAAACAGCCTGGGAA+TGG - chr3_1:1506128-1506147 Msa0343410:five_prime_UTR 50.0%
CGAACCGAATAACCACCACT+AGG + chr3_1:1506263-1506282 None:intergenic 50.0%
! AGTGGTGGTTATTCGGTTCG+GGG - chr3_1:1506263-1506282 Msa0343410:five_prime_UTR 50.0%
TCGGAGTAGGTTGCCAATGA+AGG - chr3_1:1506397-1506416 Msa0343410:five_prime_UTR 50.0%
AAGGAACCTCAGTACTCCCC+AGG - chr3_1:1501701-1501720 Msa0343410:CDS 55.0%
!! AGAATGCCTGGGGAGTACTG+AGG + chr3_1:1501710-1501729 None:intergenic 55.0%
CACAGAGAGAGAAGCTAGGG+GGG + chr3_1:1501739-1501758 None:intergenic 55.0%
GCACAGAGAGAGAAGCTAGG+GGG + chr3_1:1501740-1501759 None:intergenic 55.0%
GGAGGAAGGAGAAACAGCCT+GGG - chr3_1:1506123-1506142 Msa0343410:five_prime_UTR 55.0%
! GCGTCATCGGTTGTGGACTT+GGG - chr3_1:1506150-1506169 Msa0343410:five_prime_UTR 55.0%
! TCATCGGTTGTGGACTTGGG+AGG - chr3_1:1506153-1506172 Msa0343410:five_prime_UTR 55.0%
ACTTGGGAGGAGGAGCTGTT+AGG - chr3_1:1506166-1506185 Msa0343410:five_prime_UTR 55.0%
CTTGGGAGGAGGAGCTGTTA+GGG - chr3_1:1506167-1506186 Msa0343410:five_prime_UTR 55.0%
TTGGGAGGAGGAGCTGTTAG+GGG - chr3_1:1506168-1506187 Msa0343410:five_prime_UTR 55.0%
CATTGGAGGCTAGGTCCTAG+TGG - chr3_1:1506245-1506264 Msa0343410:five_prime_UTR 55.0%
GGGGTGAGAGAGAATGCCTG+GGG + chr3_1:1501720-1501739 None:intergenic 60.0%
GGGGGTGAGAGAGAATGCCT+GGG + chr3_1:1501721-1501740 None:intergenic 60.0%
! TGCGATTTGGGGTGGGAGGA+AGG - chr3_1:1506109-1506128 Msa0343410:five_prime_UTR 60.0%
GGGAGGAAGGAGAAACAGCC+TGG - chr3_1:1506122-1506141 Msa0343410:five_prime_UTR 60.0%
CAGCCTGGGAATGGCGTCAT+CGG - chr3_1:1506137-1506156 Msa0343410:five_prime_UTR 60.0%
CAACCGATGACGCCATTCCC+AGG + chr3_1:1506143-1506162 None:intergenic 60.0%
! GGGAATGGCGTCATCGGTTG+TGG - chr3_1:1506143-1506162 Msa0343410:five_prime_UTR 60.0%
! GGCGTCATCGGTTGTGGACT+TGG - chr3_1:1506149-1506168 Msa0343410:five_prime_UTR 60.0%
TCGGTTGTGGACTTGGGAGG+AGG - chr3_1:1506156-1506175 Msa0343410:five_prime_UTR 60.0%
! GGAGGAGCTGTTAGGGGTGT+AGG - chr3_1:1506174-1506193 Msa0343410:five_prime_UTR 60.0%
TGGAGGCTAGGTCCTAGTGG+TGG - chr3_1:1506248-1506267 Msa0343410:five_prime_UTR 60.0%
GGGGGGTGAGAGAGAATGCC+TGG + chr3_1:1501722-1501741 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 1501688 1506523 1501688 ID=Msa0343410;Name=Msa0343410
chr3_1 mRNA 1501688 1506523 1501688 ID=Msa0343410-mRNA-1;Parent=Msa0343410;Name=Msa0343410-mRNA-1;_AED=0.23;_eAED=0.23;_QI=523|0.62|0.55|0.66|1|1|9|0|418
chr3_1 exon 1501688 1501820 1501688 ID=Msa0343410-mRNA-1:exon:514;Parent=Msa0343410-mRNA-1
chr3_1 exon 1501923 1501987 1501923 ID=Msa0343410-mRNA-1:exon:513;Parent=Msa0343410-mRNA-1
chr3_1 exon 1502029 1502137 1502029 ID=Msa0343410-mRNA-1:exon:512;Parent=Msa0343410-mRNA-1
chr3_1 exon 1502981 1503105 1502981 ID=Msa0343410-mRNA-1:exon:511;Parent=Msa0343410-mRNA-1
chr3_1 exon 1503258 1503357 1503258 ID=Msa0343410-mRNA-1:exon:510;Parent=Msa0343410-mRNA-1
chr3_1 exon 1504570 1504678 1504570 ID=Msa0343410-mRNA-1:exon:509;Parent=Msa0343410-mRNA-1
chr3_1 exon 1504875 1504914 1504875 ID=Msa0343410-mRNA-1:exon:508;Parent=Msa0343410-mRNA-1
chr3_1 exon 1505165 1505241 1505165 ID=Msa0343410-mRNA-1:exon:507;Parent=Msa0343410-mRNA-1
chr3_1 exon 1505502 1506523 1505502 ID=Msa0343410-mRNA-1:exon:506;Parent=Msa0343410-mRNA-1
chr3_1 five_prime_UTR 1506001 1506523 1506001 ID=Msa0343410-mRNA-1:five_prime_utr;Parent=Msa0343410-mRNA-1
chr3_1 CDS 1505502 1506000 1505502 ID=Msa0343410-mRNA-1:cds;Parent=Msa0343410-mRNA-1
chr3_1 CDS 1505165 1505241 1505165 ID=Msa0343410-mRNA-1:cds;Parent=Msa0343410-mRNA-1
chr3_1 CDS 1504875 1504914 1504875 ID=Msa0343410-mRNA-1:cds;Parent=Msa0343410-mRNA-1
chr3_1 CDS 1504570 1504678 1504570 ID=Msa0343410-mRNA-1:cds;Parent=Msa0343410-mRNA-1
chr3_1 CDS 1503258 1503357 1503258 ID=Msa0343410-mRNA-1:cds;Parent=Msa0343410-mRNA-1
chr3_1 CDS 1502981 1503105 1502981 ID=Msa0343410-mRNA-1:cds;Parent=Msa0343410-mRNA-1
chr3_1 CDS 1502029 1502137 1502029 ID=Msa0343410-mRNA-1:cds;Parent=Msa0343410-mRNA-1
chr3_1 CDS 1501923 1501987 1501923 ID=Msa0343410-mRNA-1:cds;Parent=Msa0343410-mRNA-1
chr3_1 CDS 1501688 1501820 1501688 ID=Msa0343410-mRNA-1:cds;Parent=Msa0343410-mRNA-1
Gene Sequence

>Msa0343410

ATGTTCACTAATAATTCTTCACATCCTAAAATGCATACTTTATTTTCACCTTTGTTAGAACCAGACCTATCTTTAAACATAAGTCTTCCTTCTAATATTTCTGATTCTGAACCCAAAGGAATAACAAAACCACTTTATAATGATAATATATGTTCAATATCAACTACTTCTGATTCAGCTAGTAGTGGAAGTGAGTTAAGCCATGAAAATCCCTTCATCTATCCTCATCAACGTGACCCAACATTGAGATTAGGCTTTGGAAATTCAGATTTGATGAATCCACATCATCATAATCATCACCTTCATCGTCATCAAGTGCAAGGTGTATCAAGAAACTTTAACCAACACTTTCAACCTCACATCTATGGCCGCGATTTCAAGCGAAATACAAGAGTCGTTAATGGTGTTAAAAGAAGTGTTAGAGCTCCAAGAATGAGATGGACTACAACCCTTCATTCCCATTTTGTTCACGCTGTTCAACTTCTTGGTGGTCATGAAAGAGCAACACCAAAATCTGTGTTAGAGTTAATGAATGTGAAGGATCTAACCCTAGCACACGTCAAGAGTCACTTACAGATGTATAGAACAGTGAAGACCACTGACAAATCAGGAGCAGGTAATGGGATACTGCAGACACAAGGGATTAATATTGTTCCTTTGCATGGAGCTAATTCCTCAGCTGATGAGAGACCAAATTTACCTCAACCACTTCAAAATTCACTTAGGACATCTTGGCAACCATCAATAGAGACAAATACAAACAATACTGAAGAAAAATCCGAAATTGGTTTGACGTATTCTAATTTGAAGGAAAATGATACCATGGTGAAGAGGTTGGATTCTGCCCAATTGACATGTTCAGACACTATGATTGACTTAGAATTCACACTTGGAAGGCCTAATTGGGGAAAAGACCATGCTGAATCATCAAGAGAATTAGCTCTTCTTAATATTCAATCAAATCAAGGTTTCGGTGGTGGATATATGCGATTTGGGGTGGGAGGAAGGAGAAACAGCCTGGGAATGGCGTCATCGGTTGTGGACTTGGGAGGAGGAGCTCATAATTCTACATATCAATGGCATTGGAGGCTAGGTCCTAGTGGTGGTTATTCGGTTCGGGGCATACTTCTTCGGAGTAGGTTGCCAATGAAGGATAATTTGGTGGTGCGCGACATTCTTTCTCACGACAATCAGTTATTCATGACTAGGTGTGGAGGCTTCGAGACTGCTCAACATCTATTTCTGTTTTGCCCCTGA
Protein sequence

>Msa0343410

MFTNNSSHPKMHTLFSPLLEPDLSLNISLPSNISDSEPKGITKPLYNDNICSISTTSDSASSGSELSHENPFIYPHQRDPTLRLGFGNSDLMNPHHHNHHLHRHQVQGVSRNFNQHFQPHIYGRDFKRNTRVVNGVKRSVRAPRMRWTTTLHSHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKTTDKSGAGNGILQTQGINIVPLHGANSSADERPNLPQPLQNSLRTSWQPSIETNTNNTEEKSEIGLTYSNLKENDTMVKRLDSAQLTCSDTMIDLEFTLGRPNWGKDHAESSRELALLNIQSNQGFGGGYMRFGVGGRRNSLGMASSVVDLGGGAHNSTYQWHWRLGPSGGYSVRGILLRSRLPMKDNLVVRDILSHDNQLFMTRCGGFETAQHLFLFCP*