AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0580690

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0580690 MtrunA17_Chr1g0154261 95.098 306 3 2 11 316 1 294 0.0 584
Msa0580690 MtrunA17_Chr3g0109981 46.193 197 79 5 136 307 268 462 1.47e-40 150
Msa0580690 MtrunA17_Chr5g0410741 44.792 192 76 7 136 300 213 401 9.81e-35 133
Msa0580690 MtrunA17_Chr8g0366281 84.722 72 11 0 137 208 168 239 1.72e-34 131
Msa0580690 MtrunA17_Chr6g0479431 82.857 70 12 0 137 206 197 266 8.16e-33 127
Msa0580690 MtrunA17_Chr8g0379121 61.538 78 27 2 129 204 96 172 1.42e-21 96.3
Msa0580690 MtrunA17_Chr7g0243081 57.692 78 31 1 126 201 53 130 2.35e-21 94.7
Msa0580690 MtrunA17_Chr2g0320231 64.789 71 22 2 136 204 89 158 6.33e-20 90.9
Msa0580690 MtrunA17_Chr1g0210911 59.091 66 25 1 135 198 13 78 1.01e-19 89.7
Msa0580690 MtrunA17_Chr1g0162931 59.701 67 26 1 132 198 9 74 1.86e-19 87.8
Msa0580690 MtrunA17_Chr7g0261911 62.121 66 25 0 143 208 263 328 3.09e-18 86.7
Msa0580690 MtrunA17_Chr2g0288601 66.129 62 20 1 132 193 62 122 4.58e-18 80.1
Msa0580690 MtrunA17_Chr1g0190301 58.824 68 28 0 139 206 172 239 2.10e-17 83.6
Msa0580690 MtrunA17_Chr3g0095611 48.000 75 37 1 126 198 1 75 5.08e-17 79.3
Msa0580690 MtrunA17_Chr7g0274471 66.071 56 19 0 143 198 219 274 9.32e-17 82.0
Msa0580690 MtrunA17_Chr1g0197171 42.982 114 53 2 89 202 3 104 4.40e-16 78.6
Msa0580690 MtrunA17_Chr5g0409731 67.925 53 17 0 143 195 26 78 6.72e-16 77.8
Msa0580690 MtrunA17_Chr2g0283951 52.381 84 31 3 136 213 81 161 1.33e-15 77.8
Msa0580690 MtrunA17_Chr7g0258551 53.968 63 29 0 144 206 214 276 3.00e-15 77.0
Msa0580690 MtrunA17_Chr2g0290991 58.333 60 25 0 143 202 40 99 6.99e-15 75.1
Msa0580690 MtrunA17_Chr7g0254981 60.000 55 22 0 144 198 52 106 1.41e-14 73.6
Msa0580690 MtrunA17_Chr3g0131371 43.878 98 21 1 355 418 305 402 1.63e-14 75.5
Msa0580690 MtrunA17_Chr1g0175091 44.186 86 47 1 132 217 249 333 3.84e-14 73.9
Msa0580690 MtrunA17_Chr2g0291021 61.818 55 21 0 144 198 51 105 3.98e-14 73.2
Msa0580690 MtrunA17_Chr2g0310011 54.098 61 28 0 143 203 36 96 5.91e-14 72.8
Msa0580690 MtrunA17_Chr8g0356501 57.143 56 24 0 143 198 38 93 5.95e-14 72.8
Msa0580690 MtrunA17_Chr1g0175071 36.641 131 71 4 92 216 129 253 8.88e-14 72.0
Msa0580690 MtrunA17_Chr6g0461641 46.753 77 35 1 143 219 43 113 9.16e-14 72.4
Msa0580690 MtrunA17_Chr2g0321461 45.455 88 41 2 143 230 46 126 1.18e-13 72.0
Msa0580690 MtrunA17_Chr5g0417521 50.877 57 28 0 143 199 16 72 3.35e-13 70.5
Msa0580690 MtrunA17_Chr4g0042451 52.632 57 27 0 143 199 18 74 5.95e-13 69.7
Msa0580690 MtrunA17_Chr1g0175081 45.455 66 36 0 144 209 24 89 1.23e-12 63.9
Msa0580690 MtrunA17_Chr7g0242521 55.172 58 23 1 144 198 15 72 9.53e-12 64.7
Msa0580690 MtrunA17_Chr4g0062921 39.048 105 59 1 134 233 227 331 2.31e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0580690 AT5G42630.1 47.176 301 111 9 21 316 17 274 1.09e-64 209
Msa0580690 AT5G42630.2 52.679 224 73 6 21 244 17 207 5.22e-53 177
Msa0580690 AT1G32240.2 61.290 124 27 3 85 208 177 279 7.36e-39 144
Msa0580690 AT1G32240.1 61.290 124 27 3 85 208 177 279 1.48e-38 143
Msa0580690 AT5G16560.1 48.438 192 70 8 136 302 213 400 4.32e-36 137
Msa0580690 AT4G17695.1 82.192 73 13 0 136 208 158 230 6.66e-35 132
Msa0580690 AT1G14600.1 57.500 80 32 1 123 200 2 81 1.03e-20 91.3
Msa0580690 AT2G42660.1 53.571 84 37 1 131 212 37 120 1.43e-20 90.9
Msa0580690 AT2G02060.2 60.870 69 25 1 129 195 14 82 5.15e-19 86.7
Msa0580690 AT2G02060.1 60.870 69 25 1 129 195 14 82 5.15e-19 86.7
Msa0580690 AT2G38300.1 58.824 68 28 0 141 208 53 120 7.69e-19 87.4
Msa0580690 AT4G04605.1 58.209 67 27 1 132 198 5 70 2.02e-18 84.0
Msa0580690 AT2G40260.1 54.217 83 37 1 127 209 68 149 2.13e-18 87.0
Msa0580690 AT4G04580.1 55.738 61 27 0 143 203 15 75 7.71e-17 78.2
Msa0580690 AT4G04555.1 52.941 68 31 1 131 198 4 70 9.98e-17 75.9
Msa0580690 AT5G29000.4 52.564 78 36 1 144 221 233 309 2.32e-16 79.7
Msa0580690 AT5G45580.1 66.038 53 18 0 143 195 8 60 4.85e-16 78.2
Msa0580690 AT5G45580.2 66.038 53 18 0 143 195 24 76 5.62e-16 78.2
Msa0580690 AT4G28610.1 65.455 55 19 0 144 198 227 281 1.04e-15 79.0
Msa0580690 AT3G04450.3 63.636 55 20 0 144 198 240 294 1.38e-15 77.4
Msa0580690 AT5G29000.1 50.667 75 37 0 144 218 190 264 1.51e-15 78.2
Msa0580690 AT5G29000.3 50.667 75 37 0 144 218 190 264 1.51e-15 78.2
Msa0580690 AT5G29000.2 50.667 75 37 0 144 218 233 307 2.15e-15 78.2
Msa0580690 AT3G04450.4 63.636 55 20 0 144 198 200 254 2.33e-15 77.8
Msa0580690 AT3G04450.2 63.636 55 20 0 144 198 200 254 2.33e-15 77.8
Msa0580690 AT3G04450.1 63.636 55 20 0 144 198 240 294 2.76e-15 77.8
Msa0580690 AT3G12730.1 55.385 65 29 0 143 207 24 88 4.07e-15 75.1
Msa0580690 AT5G06800.3 31.977 172 101 3 38 209 104 259 5.74e-15 75.5
Msa0580690 AT3G24120.2 52.308 65 31 0 143 207 42 106 1.86e-14 73.9
Msa0580690 AT3G24120.1 52.308 65 31 0 143 207 42 106 1.87e-14 73.9
Msa0580690 AT2G01060.1 46.591 88 34 2 144 218 17 104 1.89e-14 73.9
Msa0580690 AT3G04030.3 31.429 175 101 6 143 311 46 207 2.84e-14 74.3
Msa0580690 AT5G06800.1 33.728 169 96 4 38 206 104 256 3.93e-14 73.9
Msa0580690 AT3G13040.3 63.636 55 20 0 144 198 243 297 3.99e-14 74.3
Msa0580690 AT3G13040.1 63.636 55 20 0 144 198 243 297 3.99e-14 74.3
Msa0580690 AT3G13040.2 63.636 55 20 0 144 198 243 297 3.99e-14 74.3
Msa0580690 AT3G04030.1 41.748 103 52 4 143 240 46 145 5.02e-14 73.6
Msa0580690 AT4G13640.1 50.769 65 32 0 143 207 38 102 5.55e-14 72.4
Msa0580690 AT4G13640.2 50.769 65 32 0 143 207 38 102 5.95e-14 72.4
Msa0580690 AT1G79430.2 55.000 60 27 0 143 202 35 94 7.90e-14 72.8
Msa0580690 AT2G20400.1 63.636 55 20 0 144 198 233 287 1.24e-13 72.4
Msa0580690 AT2G20400.2 63.636 55 20 0 144 198 233 287 1.26e-13 72.4
Msa0580690 AT5G06800.2 33.735 166 94 4 38 203 104 253 1.60e-13 72.0
Msa0580690 AT2G06020.1 47.222 72 38 0 144 215 88 159 1.95e-13 71.2
Msa0580690 AT5G18240.2 53.571 56 26 0 143 198 46 101 5.21e-13 70.5
Msa0580690 AT5G18240.3 53.571 56 26 0 143 198 46 101 5.21e-13 70.5
Msa0580690 AT5G18240.5 53.571 56 26 0 143 198 46 101 5.64e-13 70.5
Msa0580690 AT5G18240.1 53.571 56 26 0 143 198 46 101 5.80e-13 70.5
Msa0580690 AT5G18240.4 53.571 56 26 0 143 198 46 101 5.80e-13 70.5
Msa0580690 AT1G69580.2 50.877 57 28 0 143 199 35 91 6.15e-12 67.0
Msa0580690 AT1G69580.1 50.877 57 28 0 143 199 35 91 6.17e-12 67.0
Msa0580690 AT3G04030.2 30.857 175 101 7 143 311 46 206 8.04e-12 67.0

Find 129 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAACTCTAACACAGATTT+TGG 0.155756 4_1:+85895536 None:intergenic
GAGAAAGTTATATAATTATT+AGG 0.158707 4_1:+85896326 None:intergenic
TCACACTTGGAAGGCCTAAT+TGG 0.204416 4_1:-85893351 Msa0580690:CDS
GTTCACGCTGTTCAACTTCT+TGG 0.243560 4_1:-85895838 Msa0580690:CDS
GAGCCAAAAGTTAGTGAAAA+AGG 0.251588 4_1:+85896679 None:intergenic
TTTGTATTTGTCTCTATTGA+TGG 0.275353 4_1:+85893646 None:intergenic
TAGTGGTGGTTATTCGGTTC+GGG 0.280945 4_1:-85892253 Msa0580690:CDS
AGAATACGTCAAACCAATTT+CGG 0.281284 4_1:+85893606 None:intergenic
GTTGCCAATGAAGGATAATT+TGG 0.302200 4_1:-85892109 Msa0580690:CDS
TGAAGTGGTTGAGGTAAATT+TGG 0.306777 4_1:+85894907 None:intergenic
GGCGTCATCGGTTGTGGACT+TGG 0.318830 4_1:-85892366 Msa0580690:CDS
GTTGAACAGCGTGAACAAAA+TGG 0.323557 4_1:+85895845 None:intergenic
CTTAAATCAATTACCCTAGT+TGG 0.324560 4_1:-85896501 Msa0580690:five_prime_UTR
CGAAATACAAGAGTCGTTAA+TGG 0.332750 4_1:-85895922 Msa0580690:CDS
GGTGGTGGATATATGCGATT+TGG 0.333865 4_1:-85892419 Msa0580690:CDS
GTTGTAGTCCATCTCATTCT+TGG 0.337367 4_1:+85895877 None:intergenic
CACACTTGGAAGGCCTAATT+GGG 0.339173 4_1:-85893350 Msa0580690:CDS
GTGGTGGATATATGCGATTT+GGG 0.339889 4_1:-85892418 Msa0580690:CDS
AGAAAGTTATATAATTATTA+GGG 0.344221 4_1:+85896327 None:intergenic
CCTAGTTGGATCCTACTAAA+AGG 0.346339 4_1:-85896487 Msa0580690:five_prime_UTR
CACTTTCAACCTCACATCTA+TGG 0.348750 4_1:-85895958 Msa0580690:CDS
AGGTCCTAGTGGTGGTTATT+CGG 0.351140 4_1:-85892259 Msa0580690:CDS
AGTGTAGTACTAGTTATTTA+TGG 0.355108 4_1:+85896704 None:intergenic
TAAATTAATTCAGGACATCT+TGG 0.385795 4_1:-85893672 Msa0580690:intron
ATTCAATCAAATCAAGGTTT+CGG 0.389652 4_1:-85892440 Msa0580690:CDS
CTAGTGGTGGTTATTCGGTT+CGG 0.405452 4_1:-85892254 Msa0580690:CDS
ACCACCAAATTATCCTTCAT+TGG 0.412662 4_1:+85892105 None:intergenic
ACACGTCAAGAGTCACTTAC+AGG 0.413830 4_1:-85895489 Msa0580690:intron
GAAGACTTATGTTTAAAGAT+AGG 0.416511 4_1:+85896238 None:intergenic
GGGAGGAAGGAGAAACAGCC+TGG 0.416718 4_1:-85892393 Msa0580690:CDS
GGGAATGGCGTCATCGGTTG+TGG 0.425680 4_1:-85892372 Msa0580690:CDS
ATTAATATTGTTCCTTTGCA+TGG 0.427276 4_1:-85894955 Msa0580690:CDS
TGCGATTTGGGGTGGGAGGA+AGG 0.429304 4_1:-85892406 Msa0580690:CDS
TAGTGTCTGAACATGTCAAT+TGG 0.434133 4_1:+85893389 None:intergenic
CCAAAGCCTAATCTCAATGT+TGG 0.434197 4_1:+85896066 None:intergenic
TCAGAATCAGAAATATTAGA+AGG 0.435907 4_1:+85896216 None:intergenic
TGGATATATGCGATTTGGGG+TGG 0.437187 4_1:-85892414 Msa0580690:CDS
TTTAGTATTCAATCAAATCA+AGG 0.446651 4_1:-85892446 Msa0580690:intron
CTACATATCAATGGCATTGG+AGG 0.449688 4_1:-85892284 Msa0580690:CDS
GTGAAGACCACTGACAAATC+AGG 0.457613 4_1:-85895205 Msa0580690:CDS
CACGCTGTTCAACTTCTTGG+TGG 0.460230 4_1:-85895835 Msa0580690:CDS
CCAACATTGAGATTAGGCTT+TGG 0.462514 4_1:-85896066 Msa0580690:CDS
AGTGACTCTTGACGTGTGCT+AGG 0.470529 4_1:+85895495 None:intergenic
TTGAACAGCGTGAACAAAAT+GGG 0.471767 4_1:+85895846 None:intergenic
TTTGACGTATTCTAATTTGA+AGG 0.475463 4_1:-85893596 Msa0580690:CDS
CAAAGCCTAATCTCAATGTT+GGG 0.475579 4_1:+85896067 None:intergenic
AGGAAGGAATGAAGGAAGGA+AGG 0.477194 4_1:+85896382 None:intergenic
ATAATATTCCTGTATAGATA+AGG 0.478182 4_1:-85896841 None:intergenic
CGTGAACAAAATGGGAATGA+AGG 0.478451 4_1:+85895854 None:intergenic
CAACCGATGACGCCATTCCC+AGG 0.481543 4_1:+85892375 None:intergenic
TCGGAGTAGGTTGCCAATGA+AGG 0.482197 4_1:-85892118 Msa0580690:CDS
GGATATATGCGATTTGGGGT+GGG 0.484530 4_1:-85892413 Msa0580690:CDS
TCAAATCAAGGTTTCGGTGG+TGG 0.486671 4_1:-85892434 Msa0580690:CDS
TATCAATGGCATTGGAGGCT+AGG 0.488885 4_1:-85892279 Msa0580690:CDS
ATTCTACATATCAATGGCAT+TGG 0.491548 4_1:-85892287 Msa0580690:CDS
AGTGACTAGCTAGTAGTCTC+TGG 0.491760 4_1:-85896566 Msa0580690:five_prime_UTR
TTGTATTTCGCTTGAAATCG+CGG 0.491941 4_1:+85895935 None:intergenic
CAGCCTGGGAATGGCGTCAT+CGG 0.493040 4_1:-85892378 Msa0580690:CDS
ATTTAAACAGGTGAAGAGGT+TGG 0.494559 4_1:-85893419 Msa0580690:intron
CATATATTATCATTATAAAG+TGG 0.498559 4_1:+85896174 None:intergenic
ACTGCTACTAATATTATCTC+AGG 0.505617 4_1:-85896736 Msa0580690:five_prime_UTR
CTTATGTTTAAAGATAGGTC+TGG 0.507017 4_1:+85896243 None:intergenic
CTTGAAGACTTCTTCGGAGT+AGG 0.508825 4_1:-85892131 Msa0580690:intron
AGTGTCTGAACATGTCAATT+GGG 0.509793 4_1:+85893390 None:intergenic
CGTGACCCAACATTGAGATT+AGG 0.510703 4_1:-85896072 Msa0580690:CDS
AATGAAGGAAGGAAGGAAGA+GGG 0.515503 4_1:+85896389 None:intergenic
GAATGAAGGAAGGAAGGAAG+AGG 0.518946 4_1:+85896388 None:intergenic
GAGAAGGAATGAATGAATGA+AGG 0.522148 4_1:+85896362 None:intergenic
GCGTCATCGGTTGTGGACTT+GGG 0.523950 4_1:-85892365 Msa0580690:CDS
TTGCACAGAGAGAGAAGCTA+GGG 0.526968 4_1:+85896778 None:intergenic
TCGGTTGTGGACTTGGGAGG+AGG 0.527122 4_1:-85892359 Msa0580690:CDS
AGCATAATTCTACATATCAA+TGG 0.529809 4_1:-85892293 Msa0580690:CDS
ATGAATGAAGGAAGGAATGA+AGG 0.532663 4_1:+85896374 None:intergenic
AAGGAGAAACAGCCTGGGAA+TGG 0.545633 4_1:-85892387 Msa0580690:CDS
AACCACTTCAAAATTCACTT+AGG 0.547130 4_1:-85894894 Msa0580690:intron
TTCCTGTATAGATAAGGTAA+AGG 0.548917 4_1:-85896835 None:intergenic
ACTTAGAATTCACACTTGGA+AGG 0.551628 4_1:-85893360 Msa0580690:CDS
ACGTTGATGAGGATAGATGA+AGG 0.553867 4_1:+85896092 None:intergenic
ATGAAGGAAGGAATGAAGGA+AGG 0.557486 4_1:+85896378 None:intergenic
TCATCGGTTGTGGACTTGGG+AGG 0.558682 4_1:-85892362 Msa0580690:CDS
ACCTGCTCCTGATTTGTCAG+TGG 0.561571 4_1:+85895198 None:intergenic
CTAGTTATTTATGGAAGCTG+TGG 0.561681 4_1:+85896713 None:intergenic
ACCACTGACAAATCAGGAGC+AGG 0.567981 4_1:-85895199 Msa0580690:intron
AGGAATGAATGAATGAAGGA+AGG 0.571977 4_1:+85896366 None:intergenic
TACTATTTAAACAGGTGAAG+AGG 0.572272 4_1:-85893423 Msa0580690:intron
AGGGTATAGAGTACTTGAGA+AGG 0.577363 4_1:+85896346 None:intergenic
TGAGATAATATTAGTAGCAG+TGG 0.579182 4_1:+85896738 None:intergenic
TTCGAGGTATGTGTGTGATG+AGG 0.579465 4_1:+85896461 None:intergenic
CAGTTATTCATGACTAGGTG+TGG 0.582984 4_1:-85892057 Msa0580690:CDS
AAGGAACCTCAGTACTCCCC+AGG 0.587521 4_1:-85896816 Msa0580690:five_prime_UTR
CATTGGAGGCTAGGTCCTAG+TGG 0.587931 4_1:-85892270 Msa0580690:CDS
CACAGAGAGAGAAGCTAGGG+GGG 0.592176 4_1:+85896781 None:intergenic
TTTGCACAGAGAGAGAAGCT+AGG 0.592920 4_1:+85896777 None:intergenic
GATAGGTCTGGTTCTAACAA+AGG 0.593492 4_1:+85896255 None:intergenic
GCCAATGAAGGATAATTTGG+TGG 0.595052 4_1:-85892106 Msa0580690:CDS
ACTTCTGATTCAGCTAGTAG+TGG 0.595408 4_1:-85896138 Msa0580690:CDS
AGATGTGAGGTTGAAAGTGT+TGG 0.598997 4_1:+85895962 None:intergenic
TATATGCGATTTGGGGTGGG+AGG 0.599573 4_1:-85892410 Msa0580690:CDS
TTAGAGCTCCAAGAATGAGA+TGG 0.601023 4_1:-85895885 Msa0580690:CDS
GTGACTCTTGACGTGTGCTA+GGG 0.602003 4_1:+85895496 None:intergenic
CGAACCGAATAACCACCACT+AGG 0.602895 4_1:+85892255 None:intergenic
ATTTCTGATTCTGAACCCAA+AGG 0.603069 4_1:-85896207 Msa0580690:CDS
AGTGGTGGTTATTCGGTTCG+GGG 0.605823 4_1:-85892252 Msa0580690:CDS
CAATCAAATCAAGGTTTCGG+TGG 0.607198 4_1:-85892437 Msa0580690:CDS
TTTGAAGGAAAATGATACCA+TGG 0.610022 4_1:-85893581 Msa0580690:intron
CGTTGATGAGGATAGATGAA+GGG 0.610120 4_1:+85896093 None:intergenic
ACAATCAGTTATTCATGACT+AGG 0.611201 4_1:-85892062 Msa0580690:CDS
GTGAACAAAATGGGAATGAA+GGG 0.613934 4_1:+85895855 None:intergenic
CTTGCACTTGATGACGATGA+AGG 0.615738 4_1:+85896004 None:intergenic
CTTCATCGTCATCAAGTGCA+AGG 0.616119 4_1:-85896003 Msa0580690:CDS
AATGTTGGGTCACGTTGATG+AGG 0.616823 4_1:+85896081 None:intergenic
TTATTCATGACTAGGTGTGG+AGG 0.630451 4_1:-85892054 Msa0580690:CDS
GAGGAATTAGCTCCATGCAA+AGG 0.631962 4_1:+85894943 None:intergenic
ATTGACTTAGAATTCACACT+TGG 0.638776 4_1:-85893364 Msa0580690:CDS
AATGGGATACTGCAGACACA+AGG 0.640188 4_1:-85894979 Msa0580690:CDS
TGGTGGATATATGCGATTTG+GGG 0.643720 4_1:-85892417 Msa0580690:CDS
ATTTGGTCTCTCATCAGCTG+AGG 0.653148 4_1:+85894924 None:intergenic
GGAGGAAGGAGAAACAGCCT+GGG 0.654032 4_1:-85892392 Msa0580690:CDS
ACACTTGGAAGGCCTAATTG+GGG 0.657474 4_1:-85893349 Msa0580690:CDS
ATTCTCTTGATGATTCAGCA+TGG 0.658556 4_1:+85893320 None:intergenic
GCACAGAGAGAGAAGCTAGG+GGG 0.669095 4_1:+85896780 None:intergenic
TGGAGGCTAGGTCCTAGTGG+TGG 0.669115 4_1:-85892267 Msa0580690:CDS
GTTAGAGTTAATGAATGTGA+AGG 0.671020 4_1:-85895525 Msa0580690:CDS
AGGTGATGATTATGATGATG+CGG 0.680614 4_1:+85896024 None:intergenic
ATGGGATACTGCAGACACAA+GGG 0.690336 4_1:-85894978 Msa0580690:CDS
AAATCGCGGCCATAGATGTG+AGG 0.691470 4_1:+85895949 None:intergenic
AGAATGCCTGGGGAGTACTG+AGG 0.708268 4_1:+85896810 None:intergenic
TGCACAGAGAGAGAAGCTAG+GGG 0.716432 4_1:+85896779 None:intergenic
GGGGTGAGAGAGAATGCCTG+GGG 0.733272 4_1:+85896800 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAGTTATATAATTATTA+GGG + chr4_1:85892519-85892538 None:intergenic 10.0%
!! AAAATAAGAGTAAAAAAAAA+AGG + chr4_1:85894438-85894457 None:intergenic 10.0%
!!! TTACAAAATTCATTTTTTTA+AGG - chr4_1:85894592-85894611 Msa0580690:intron 10.0%
!!! TACAAAATTCATTTTTTTAA+GGG - chr4_1:85894593-85894612 Msa0580690:intron 10.0%
!!! CATTTATTTATAAACTTTTA+AGG - chr4_1:85894653-85894672 Msa0580690:intron 10.0%
!!! TTTATTTATAAACTTTTAAG+GGG - chr4_1:85894655-85894674 Msa0580690:intron 10.0%
!! GAGAAAGTTATATAATTATT+AGG + chr4_1:85892520-85892539 None:intergenic 15.0%
!! CATATATTATCATTATAAAG+TGG + chr4_1:85892672-85892691 None:intergenic 15.0%
!!! TTTTTCCTTATATTTTGTTA+TGG + chr4_1:85893184-85893203 None:intergenic 15.0%
!!! AAGGAAGTATAATATAATTA+TGG - chr4_1:85893243-85893262 Msa0580690:intron 15.0%
!! AAATAATTAAAAGGTGAAAA+TGG + chr4_1:85893436-85893455 None:intergenic 15.0%
!! TTTGTCAGAAAATAATTAAA+AGG + chr4_1:85893445-85893464 None:intergenic 15.0%
!!! TATATTAATCTTTAACTTTG+TGG - chr4_1:85893552-85893571 Msa0580690:intron 15.0%
!!! TTTTTATTATTTTTCATGCT+TGG - chr4_1:85893592-85893611 Msa0580690:CDS 15.0%
!!! TAAACTTTTTACTACATATT+GGG + chr4_1:85894346-85894365 None:intergenic 15.0%
!!! CTAAATTATTTTTTTCAAGA+AGG - chr4_1:85894760-85894779 Msa0580690:intron 15.0%
!!! AATTTAAAGCAACTAAAAAA+TGG + chr4_1:85895113-85895132 None:intergenic 15.0%
!! TTCACTTTATAAATTAATTC+AGG - chr4_1:85895162-85895181 Msa0580690:intron 15.0%
!! TAACAATAAAAGAAAATAGA+AGG - chr4_1:85895793-85895812 Msa0580690:intron 15.0%
!!! AACATCAATCTTTTATTTTT+TGG + chr4_1:85895991-85896010 None:intergenic 15.0%
!! AAAAAATAAAAGATTGATGT+TGG - chr4_1:85895990-85896009 Msa0580690:CDS 15.0%
!!! GAAAATAAAGTATGCATTTT+AGG + chr4_1:85892567-85892586 None:intergenic 20.0%
!! ATATTATCATTTCTTCATCA+TGG - chr4_1:85893147-85893166 Msa0580690:intron 20.0%
!! TTAGATCTTTAGTTAGTATT+TGG - chr4_1:85893732-85893751 Msa0580690:intron 20.0%
!!! CTAAACTTTTTACTACATAT+TGG + chr4_1:85894347-85894366 None:intergenic 20.0%
!!! TTTAGAGTGAAAAAAATAGT+GGG + chr4_1:85894745-85894764 None:intergenic 20.0%
!!! ATTTAGAGTGAAAAAAATAG+TGG + chr4_1:85894746-85894765 None:intergenic 20.0%
!! CAAATATATACAGTTCAAAA+CGG + chr4_1:85895022-85895041 None:intergenic 20.0%
!! AATGAGAAATTAAATACAGA+AGG + chr4_1:85895143-85895162 None:intergenic 20.0%
!! TTTGTGTATACTATTTAAAC+AGG - chr4_1:85895412-85895431 Msa0580690:intron 20.0%
!! GATATATTAAATCATTCACA+TGG + chr4_1:85895650-85895669 None:intergenic 20.0%
!! AAAGTTAACAAAAAAGGTTA+GGG + chr4_1:85896254-85896273 None:intergenic 20.0%
!! TAATGGAAAGTTAACAAAAA+AGG + chr4_1:85896260-85896279 None:intergenic 20.0%
!!! TTTGTTTGACAATGTTATTT+TGG + chr4_1:85896320-85896339 None:intergenic 20.0%
!! ACATTGTCAAACAAAATATT+AGG - chr4_1:85896325-85896344 Msa0580690:exon 20.0%
!! CATTGTCAAACAAAATATTA+GGG - chr4_1:85896326-85896345 Msa0580690:five_prime_UTR 20.0%
!! TTTAGTATTCAATCAAATCA+AGG - chr4_1:85896397-85896416 Msa0580690:five_prime_UTR 20.0%
! AGTGTAGTACTAGTTATTTA+TGG + chr4_1:85892142-85892161 None:intergenic 25.0%
!!! AAAAGATCAGAGTTTTTTTG+GGG + chr4_1:85892200-85892219 None:intergenic 25.0%
!!! GAAAAGATCAGAGTTTTTTT+GGG + chr4_1:85892201-85892220 None:intergenic 25.0%
!!! AGAAAAGATCAGAGTTTTTT+TGG + chr4_1:85892202-85892221 None:intergenic 25.0%
! GAAGACTTATGTTTAAAGAT+AGG + chr4_1:85892608-85892627 None:intergenic 25.0%
! TCAGAATCAGAAATATTAGA+AGG + chr4_1:85892630-85892649 None:intergenic 25.0%
! CATGTCCATAACAAAATATA+AGG - chr4_1:85893176-85893195 Msa0580690:intron 25.0%
!! TTTGCTGAACTTTTATTACA+AGG - chr4_1:85893224-85893243 Msa0580690:intron 25.0%
!!! TAATTGTGTAATTAACTTGC+AGG - chr4_1:85893277-85893296 Msa0580690:intron 25.0%
!! ATTAACTCTAACACAGATTT+TGG + chr4_1:85893310-85893329 None:intergenic 25.0%
!! AATGAAATTTTGCAGGTAAT+GGG - chr4_1:85893847-85893866 Msa0580690:intron 25.0%
! ATTAATATTGTTCCTTTGCA+TGG - chr4_1:85893888-85893907 Msa0580690:intron 25.0%
! TAAAAGCTATGTTAACGTAT+AGG - chr4_1:85894038-85894057 Msa0580690:intron 25.0%
!!! ATTTTGACAAAAAATGCCTA+GGG - chr4_1:85894226-85894245 Msa0580690:intron 25.0%
!!! GTAGTAAAAAGTTTAGCTTT+TGG - chr4_1:85894351-85894370 Msa0580690:intron 25.0%
! ATCACAAAAATTGTGAGATT+TGG - chr4_1:85894389-85894408 Msa0580690:intron 25.0%
! TTGTGTAATTATAGACTTTG+AGG + chr4_1:85894465-85894484 None:intergenic 25.0%
! CATTTATTACTTAATAAGCC+AGG + chr4_1:85894632-85894651 None:intergenic 25.0%
! CAAAATCGACATATTAATTG+TGG - chr4_1:85894684-85894703 Msa0580690:intron 25.0%
!! ATTGTTGGCAATCTTAATTT+TGG + chr4_1:85894869-85894888 None:intergenic 25.0%
!!! GATGTCATGCAATATTTTAA+CGG + chr4_1:85894962-85894981 None:intergenic 25.0%
!!! CGTTTTGAACTGTATATATT+TGG - chr4_1:85895020-85895039 Msa0580690:intron 25.0%
!! GAACTGTATATATTTGGAAT+TGG - chr4_1:85895026-85895045 Msa0580690:intron 25.0%
! TGGAATTGGAATTAGTATTT+AGG - chr4_1:85895040-85895059 Msa0580690:intron 25.0%
! TAAATTAATTCAGGACATCT+TGG - chr4_1:85895171-85895190 Msa0580690:intron 25.0%
! TTTGTATTTGTCTCTATTGA+TGG + chr4_1:85895200-85895219 None:intergenic 25.0%
! TTTGACGTATTCTAATTTGA+AGG - chr4_1:85895247-85895266 Msa0580690:intron 25.0%
!!! AAGTTTTGGGACATATATAT+AGG - chr4_1:85895286-85895305 Msa0580690:intron 25.0%
!!! AGTTTTGGGACATATATATA+GGG - chr4_1:85895287-85895306 Msa0580690:intron 25.0%
! TACACTATTCATTAATGACA+AGG + chr4_1:85895604-85895623 None:intergenic 25.0%
!! TTTTGTATGAAAGTGAAATG+AGG - chr4_1:85895678-85895697 Msa0580690:intron 25.0%
! AAAGTGAAATGAGGAATATT+GGG - chr4_1:85895687-85895706 Msa0580690:intron 25.0%
! GACTAGATACTTCAATAATA+TGG + chr4_1:85896089-85896108 None:intergenic 25.0%
! AAGTTAACAAAAAAGGTTAG+GGG + chr4_1:85896253-85896272 None:intergenic 25.0%
! GAAAGTTAACAAAAAAGGTT+AGG + chr4_1:85896255-85896274 None:intergenic 25.0%
! AATACTAAAAAATGAGACCA+CGG + chr4_1:85896386-85896405 None:intergenic 25.0%
! ATTCAATCAAATCAAGGTTT+CGG - chr4_1:85896403-85896422 Msa0580690:five_prime_UTR 25.0%
! AGCATAATTCTACATATCAA+TGG - chr4_1:85896550-85896569 Msa0580690:five_prime_UTR 25.0%
!!! ATGCTACTTTAGATTTCATT+TGG - chr4_1:85896655-85896674 Msa0580690:five_prime_UTR 25.0%
! GCAAAAATAGAAACATTCAA+GGG + chr4_1:85896693-85896712 None:intergenic 25.0%
! AGCAAAAATAGAAACATTCA+AGG + chr4_1:85896694-85896713 None:intergenic 25.0%
TGAGATAATATTAGTAGCAG+TGG + chr4_1:85892108-85892127 None:intergenic 30.0%
ACTGCTACTAATATTATCTC+AGG - chr4_1:85892107-85892126 Msa0580690:CDS 30.0%
!! TACCCTTTTTCACTAACTTT+TGG - chr4_1:85892161-85892180 Msa0580690:intron 30.0%
AGCCAAAAGTTAGTGAAAAA+GGG + chr4_1:85892166-85892185 None:intergenic 30.0%
CTTAAATCAATTACCCTAGT+TGG - chr4_1:85892342-85892361 Msa0580690:intron 30.0%
CTTATGTTTAAAGATAGGTC+TGG + chr4_1:85892603-85892622 None:intergenic 30.0%
!!! AGTGGTTTTGTTATTCCTTT+GGG + chr4_1:85892654-85892673 None:intergenic 30.0%
!!! AAGTGGTTTTGTTATTCCTT+TGG + chr4_1:85892655-85892674 None:intergenic 30.0%
AAGTGCTCATGAAGAATAAT+AGG + chr4_1:85893059-85893078 None:intergenic 30.0%
GTTAGAGTTAATGAATGTGA+AGG - chr4_1:85893318-85893337 Msa0580690:CDS 30.0%
CTCATTAAACTGTAAGACTA+TGG + chr4_1:85893396-85893415 None:intergenic 30.0%
! TAAGAGCAATGAAATTTTGC+AGG - chr4_1:85893840-85893859 Msa0580690:intron 30.0%
! CAATGAAATTTTGCAGGTAA+TGG - chr4_1:85893846-85893865 Msa0580690:intron 30.0%
AACCACTTCAAAATTCACTT+AGG - chr4_1:85893949-85893968 Msa0580690:intron 30.0%
!! TACCTAAGTGAATTTTGAAG+TGG + chr4_1:85893954-85893973 None:intergenic 30.0%
!! GATTTTGACAAAAAATGCCT+AGG - chr4_1:85894225-85894244 Msa0580690:intron 30.0%
!! TAATCCAAAAGCATCGTTAA+GGG + chr4_1:85894290-85894309 None:intergenic 30.0%
! CTCACAATTTTTGTGATTCA+TGG + chr4_1:85894386-85894405 None:intergenic 30.0%
ATATTGTTCAATGTGCAAAG+AGG + chr4_1:85894516-85894535 None:intergenic 30.0%
! TGTTTTATCCATCACTCTTT+AGG - chr4_1:85894828-85894847 Msa0580690:intron 30.0%
TAGAAAGGAGAAAACATTGT+TGG + chr4_1:85894884-85894903 None:intergenic 30.0%
!! CCAAATGTTTCAATTTGCTA+AGG + chr4_1:85894932-85894951 None:intergenic 30.0%
CCTTAGCAAATTGAAACATT+TGG - chr4_1:85894929-85894948 Msa0580690:CDS 30.0%
! GGAATTAGTATTTAGGACTT+TGG - chr4_1:85895047-85895066 Msa0580690:intron 30.0%
!!! AGGACTTTGGATTTTGAAAT+TGG - chr4_1:85895060-85895079 Msa0580690:intron 30.0%
GAGTACTAGAAAACTAGAAT+GGG - chr4_1:85895082-85895101 Msa0580690:intron 30.0%
ACTGAAGAAAAATCCGAAAT+TGG - chr4_1:85895224-85895243 Msa0580690:intron 30.0%
AGAATACGTCAAACCAATTT+CGG + chr4_1:85895240-85895259 None:intergenic 30.0%
TTTGAAGGAAAATGATACCA+TGG - chr4_1:85895262-85895281 Msa0580690:intron 30.0%
! AATGATACCATGGTAAGTTT+TGG - chr4_1:85895272-85895291 Msa0580690:intron 30.0%
! ATGATACCATGGTAAGTTTT+GGG - chr4_1:85895273-85895292 Msa0580690:intron 30.0%
TACTATTTAAACAGGTGAAG+AGG - chr4_1:85895420-85895439 Msa0580690:intron 30.0%
! ATTGACTTAGAATTCACACT+TGG - chr4_1:85895479-85895498 Msa0580690:intron 30.0%
TAGTGTACTACTACATTACT+AGG - chr4_1:85895617-85895636 Msa0580690:intron 30.0%
GAAAGTGAAATGAGGAATAT+TGG - chr4_1:85895686-85895705 Msa0580690:intron 30.0%
! TTTTGCCTAACTAAAAGTCA+TGG + chr4_1:85895837-85895856 None:intergenic 30.0%
!! GACTTTTAGTTAGGCAAAAT+AGG - chr4_1:85895838-85895857 Msa0580690:CDS 30.0%
CAAAATATTAGGGTTTGACA+TGG - chr4_1:85896336-85896355 Msa0580690:five_prime_UTR 30.0%
CACGGTTTAATGGTTTAATA+GGG + chr4_1:85896368-85896387 None:intergenic 30.0%
ATTCTACATATCAATGGCAT+TGG - chr4_1:85896556-85896575 Msa0580690:five_prime_UTR 30.0%
! TTTTTGCTTGAAGACTTCTT+CGG - chr4_1:85896706-85896725 Msa0580690:five_prime_UTR 30.0%
ACAATCAGTTATTCATGACT+AGG - chr4_1:85896781-85896800 Msa0580690:five_prime_UTR 30.0%
CTAGTTATTTATGGAAGCTG+TGG + chr4_1:85892133-85892152 None:intergenic 35.0%
GAGCCAAAAGTTAGTGAAAA+AGG + chr4_1:85892167-85892186 None:intergenic 35.0%
! CTTTTAGTAGGATCCAACTA+GGG + chr4_1:85892358-85892377 None:intergenic 35.0%
!! CATGATTTGCATTGTTTTCG+AGG + chr4_1:85892401-85892420 None:intergenic 35.0%
ATGAATGAAGGAAGGAATGA+AGG + chr4_1:85892472-85892491 None:intergenic 35.0%
AGGAATGAATGAATGAAGGA+AGG + chr4_1:85892480-85892499 None:intergenic 35.0%
GAGAAGGAATGAATGAATGA+AGG + chr4_1:85892484-85892503 None:intergenic 35.0%
ATTTCTGATTCTGAACCCAA+AGG - chr4_1:85892636-85892655 Msa0580690:intron 35.0%
! GATAGATGAAGGGATTTTCA+TGG + chr4_1:85892743-85892762 None:intergenic 35.0%
CAAAGCCTAATCTCAATGTT+GGG + chr4_1:85892779-85892798 None:intergenic 35.0%
! AGGTGATGATTATGATGATG+CGG + chr4_1:85892822-85892841 None:intergenic 35.0%
TTGTATTTCGCTTGAAATCG+CGG + chr4_1:85892911-85892930 None:intergenic 35.0%
CGAAATACAAGAGTCGTTAA+TGG - chr4_1:85892921-85892940 Msa0580690:intron 35.0%
GTGAACAAAATGGGAATGAA+GGG + chr4_1:85892991-85893010 None:intergenic 35.0%
TTGAACAGCGTGAACAAAAT+GGG + chr4_1:85893000-85893019 None:intergenic 35.0%
!! TAAGAGAAGTGTTCTAGTAG+TGG - chr4_1:85893479-85893498 Msa0580690:intron 35.0%
AGAAAGTAGAACAAGCACTA+GGG - chr4_1:85893502-85893521 Msa0580690:intron 35.0%
TGAAGTGGTTGAGGTAAATT+TGG + chr4_1:85893939-85893958 None:intergenic 35.0%
!!! AGTGAATTTTGAAGTGGTTG+AGG + chr4_1:85893948-85893967 None:intergenic 35.0%
AATAGCCCTGTGTTGAATAA+TGG + chr4_1:85894019-85894038 None:intergenic 35.0%
TCACACAAATGCTTTGTGTT+TGG - chr4_1:85894070-85894089 Msa0580690:intron 35.0%
! AAATGCCTAGGGCTTTTTAT+AGG - chr4_1:85894237-85894256 Msa0580690:intron 35.0%
ACATACCTATAAAAAGCCCT+AGG + chr4_1:85894245-85894264 None:intergenic 35.0%
! TAGGGCTTTTTATAGGTATG+TGG - chr4_1:85894244-85894263 Msa0580690:intron 35.0%
! AGGGCTTTTTATAGGTATGT+GGG - chr4_1:85894245-85894264 Msa0580690:intron 35.0%
!! GTAATCCAAAAGCATCGTTA+AGG + chr4_1:85894291-85894310 None:intergenic 35.0%
ATTTACTCTTTCCACAACCA+AGG + chr4_1:85894719-85894738 None:intergenic 35.0%
! AGAGTGAAAAAAATAGTGGG+TGG + chr4_1:85894742-85894761 None:intergenic 35.0%
CAATCATAGTGTACCTTAAG+AGG + chr4_1:85894791-85894810 None:intergenic 35.0%
ATCTTGAACCTAAAGAGTGA+TGG + chr4_1:85894839-85894858 None:intergenic 35.0%
!! CTCCTTTCTAGCTAATAATG+AGG - chr4_1:85894894-85894913 Msa0580690:intron 35.0%
GTCCTCATTATTAGCTAGAA+AGG + chr4_1:85894899-85894918 None:intergenic 35.0%
! TTCTAGCTAATAATGAGGAC+TGG - chr4_1:85894899-85894918 Msa0580690:CDS 35.0%
! AGTTTGTGATTGGCTATTGA+AGG + chr4_1:85894989-85895008 None:intergenic 35.0%
! GGAGTACTAGAAAACTAGAA+TGG - chr4_1:85895081-85895100 Msa0580690:intron 35.0%
ATATGTCCCAAAACTTACCA+TGG + chr4_1:85895282-85895301 None:intergenic 35.0%
ATATATATAGGGCCAGAAAC+TGG - chr4_1:85895298-85895317 Msa0580690:intron 35.0%
ATTTAAACAGGTGAAGAGGT+TGG - chr4_1:85895424-85895443 Msa0580690:intron 35.0%
AGTGTCTGAACATGTCAATT+GGG + chr4_1:85895456-85895475 None:intergenic 35.0%
TAGTGTCTGAACATGTCAAT+TGG + chr4_1:85895457-85895476 None:intergenic 35.0%
ACTTAGAATTCACACTTGGA+AGG - chr4_1:85895483-85895502 Msa0580690:intron 35.0%
! ATTCTCTTGATGATTCAGCA+TGG + chr4_1:85895526-85895545 None:intergenic 35.0%
CTTGAGTCCAAAGAATTTCA+GGG - chr4_1:85895735-85895754 Msa0580690:intron 35.0%
!! ATGGACCATGACTTTTAGTT+AGG - chr4_1:85895829-85895848 Msa0580690:CDS 35.0%
TCCAATATAAGGTCCCAAAT+GGG + chr4_1:85895866-85895885 None:intergenic 35.0%
TGTTATGATAGCTAGTACTG+TGG + chr4_1:85895909-85895928 None:intergenic 35.0%
CATATATGTAACGTTCCAAG+AGG - chr4_1:85895939-85895958 Msa0580690:CDS 35.0%
TCACGAGAATCTCTATATAG+AGG - chr4_1:85896034-85896053 Msa0580690:CDS 35.0%
TTCCACGCTTCTAACATATT+GGG + chr4_1:85896139-85896158 None:intergenic 35.0%
ATTCCACGCTTCTAACATAT+TGG + chr4_1:85896140-85896159 None:intergenic 35.0%
GGTTTGAAAACAATAGAGGA+GGG + chr4_1:85896219-85896238 None:intergenic 35.0%
TGGTTTGAAAACAATAGAGG+AGG + chr4_1:85896220-85896239 None:intergenic 35.0%
!! GGTTGGTTTGAAAACAATAG+AGG + chr4_1:85896223-85896242 None:intergenic 35.0%
TTAACAAAAAAGGTTAGGGG+AGG + chr4_1:85896250-85896269 None:intergenic 35.0%
AATATTAGGGTTTGACATGG+AGG - chr4_1:85896339-85896358 Msa0580690:five_prime_UTR 35.0%
CCACGGTTTAATGGTTTAAT+AGG + chr4_1:85896369-85896388 None:intergenic 35.0%
CCTATTAAACCATTAAACCG+TGG - chr4_1:85896366-85896385 Msa0580690:five_prime_UTR 35.0%
AAAATGAGACCACGGTTTAA+TGG + chr4_1:85896378-85896397 None:intergenic 35.0%
GTTGCCAATGAAGGATAATT+TGG - chr4_1:85896734-85896753 Msa0580690:five_prime_UTR 35.0%
ACCACCAAATTATCCTTCAT+TGG + chr4_1:85896741-85896760 None:intergenic 35.0%
!!! GATCAGAGTTTTTTTGGGGA+TGG + chr4_1:85892196-85892215 None:intergenic 40.0%
! CCTTTTAGTAGGATCCAACT+AGG + chr4_1:85892359-85892378 None:intergenic 40.0%
CCTAGTTGGATCCTACTAAA+AGG - chr4_1:85892356-85892375 Msa0580690:CDS 40.0%
! TGATGAGGTAGCCTTTTAGT+AGG + chr4_1:85892370-85892389 None:intergenic 40.0%
AATGAAGGAAGGAAGGAAGA+GGG + chr4_1:85892457-85892476 None:intergenic 40.0%
ATGAAGGAAGGAATGAAGGA+AGG + chr4_1:85892468-85892487 None:intergenic 40.0%
! AGGGTATAGAGTACTTGAGA+AGG + chr4_1:85892500-85892519 None:intergenic 40.0%
!! GATAGGTCTGGTTCTAACAA+AGG + chr4_1:85892591-85892610 None:intergenic 40.0%
ACTTCTGATTCAGCTAGTAG+TGG - chr4_1:85892705-85892724 Msa0580690:intron 40.0%
! CGTTGATGAGGATAGATGAA+GGG + chr4_1:85892753-85892772 None:intergenic 40.0%
! ACGTTGATGAGGATAGATGA+AGG + chr4_1:85892754-85892773 None:intergenic 40.0%
CCAAAGCCTAATCTCAATGT+TGG + chr4_1:85892780-85892799 None:intergenic 40.0%
CCAACATTGAGATTAGGCTT+TGG - chr4_1:85892777-85892796 Msa0580690:intron 40.0%
! AGATGTGAGGTTGAAAGTGT+TGG + chr4_1:85892884-85892903 None:intergenic 40.0%
CACTTTCAACCTCACATCTA+TGG - chr4_1:85892885-85892904 Msa0580690:intron 40.0%
TTAGAGCTCCAAGAATGAGA+TGG - chr4_1:85892958-85892977 Msa0580690:intron 40.0%
GTTGTAGTCCATCTCATTCT+TGG + chr4_1:85892969-85892988 None:intergenic 40.0%
CGTGAACAAAATGGGAATGA+AGG + chr4_1:85892992-85893011 None:intergenic 40.0%
GTTGAACAGCGTGAACAAAA+TGG + chr4_1:85893001-85893020 None:intergenic 40.0%
GAGAAAGTAGAACAAGCACT+AGG - chr4_1:85893501-85893520 Msa0580690:intron 40.0%
AACAAGCACTAGGGACAAAA+GGG - chr4_1:85893511-85893530 Msa0580690:intron 40.0%
TGAGCACCATTATTCAACAC+AGG - chr4_1:85894010-85894029 Msa0580690:intron 40.0%
GAGCACCATTATTCAACACA+GGG - chr4_1:85894011-85894030 Msa0580690:intron 40.0%
! GCTTTTTATAGGTATGTGGG+TGG - chr4_1:85894248-85894267 Msa0580690:intron 40.0%
!! AAGGGTATCTTACAAAGTCC+TGG - chr4_1:85894611-85894630 Msa0580690:intron 40.0%
! AATTGTGGTTTGTCCTTCCT+TGG - chr4_1:85894699-85894718 Msa0580690:intron 40.0%
CATAGTGTACCTTAAGAGGA+TGG + chr4_1:85894787-85894806 None:intergenic 40.0%
AATAGCCAATCACAAACTGC+TGG - chr4_1:85894991-85895010 Msa0580690:intron 40.0%
GCTTGAGTCCAAAGAATTTC+AGG - chr4_1:85895734-85895753 Msa0580690:intron 40.0%
GACAATGCCCTGAAATTCTT+TGG + chr4_1:85895745-85895764 None:intergenic 40.0%
GAAAATAGAAGGCCTCTTTC+AGG - chr4_1:85895804-85895823 Msa0580690:intron 40.0%
CCAATATAAGGTCCCAAATG+GGG + chr4_1:85895865-85895884 None:intergenic 40.0%
GTCCAATATAAGGTCCCAAA+TGG + chr4_1:85895867-85895886 None:intergenic 40.0%
! TTTGGGACCTTATATTGGAC+AGG - chr4_1:85895867-85895886 Msa0580690:CDS 40.0%
CGTGGAATTCGATTCTACAA+TGG - chr4_1:85896152-85896171 Msa0580690:CDS 40.0%
AAAAAGGTTAGGGGAGGTAA+TGG + chr4_1:85896244-85896263 None:intergenic 40.0%
CAATCAAATCAAGGTTTCGG+TGG - chr4_1:85896406-85896425 Msa0580690:five_prime_UTR 40.0%
!! GTGGTGGATATATGCGATTT+GGG - chr4_1:85896425-85896444 Msa0580690:five_prime_UTR 40.0%
! TGGTGGATATATGCGATTTG+GGG - chr4_1:85896426-85896445 Msa0580690:five_prime_UTR 40.0%
! CTACATATCAATGGCATTGG+AGG - chr4_1:85896559-85896578 Msa0580690:five_prime_UTR 40.0%
GCCAATGAAGGATAATTTGG+TGG - chr4_1:85896737-85896756 Msa0580690:five_prime_UTR 40.0%
CAGTTATTCATGACTAGGTG+TGG - chr4_1:85896786-85896805 Msa0580690:five_prime_UTR 40.0%
TTATTCATGACTAGGTGTGG+AGG - chr4_1:85896789-85896808 Msa0580690:five_prime_UTR 40.0%
TTGCACAGAGAGAGAAGCTA+GGG + chr4_1:85892068-85892087 None:intergenic 45.0%
TTTGCACAGAGAGAGAAGCT+AGG + chr4_1:85892069-85892088 None:intergenic 45.0%
!!! CAGAGTTTTTTTGGGGATGG+TGG + chr4_1:85892193-85892212 None:intergenic 45.0%
! AGTGACTAGCTAGTAGTCTC+TGG - chr4_1:85892277-85892296 Msa0580690:CDS 45.0%
TTCGAGGTATGTGTGTGATG+AGG + chr4_1:85892385-85892404 None:intergenic 45.0%
GAATGAAGGAAGGAAGGAAG+AGG + chr4_1:85892458-85892477 None:intergenic 45.0%
AGGAAGGAATGAAGGAAGGA+AGG + chr4_1:85892464-85892483 None:intergenic 45.0%
AATGTTGGGTCACGTTGATG+AGG + chr4_1:85892765-85892784 None:intergenic 45.0%
CGTGACCCAACATTGAGATT+AGG - chr4_1:85892771-85892790 Msa0580690:intron 45.0%
!! CTTGCACTTGATGACGATGA+AGG + chr4_1:85892842-85892861 None:intergenic 45.0%
CTTCATCGTCATCAAGTGCA+AGG - chr4_1:85892840-85892859 Msa0580690:intron 45.0%
GTTCACGCTGTTCAACTTCT+TGG - chr4_1:85893005-85893024 Msa0580690:intron 45.0%
ACACGTCAAGAGTCACTTAC+AGG - chr4_1:85893354-85893373 Msa0580690:CDS 45.0%
GTCAAGAGTCACTTACAGGT+GGG - chr4_1:85893358-85893377 Msa0580690:CDS 45.0%
TCAAGAGTCACTTACAGGTG+GGG - chr4_1:85893359-85893378 Msa0580690:CDS 45.0%
GAACAAGCACTAGGGACAAA+AGG - chr4_1:85893510-85893529 Msa0580690:intron 45.0%
GTGAAGACCACTGACAAATC+AGG - chr4_1:85893638-85893657 Msa0580690:CDS 45.0%
AATGGGATACTGCAGACACA+AGG - chr4_1:85893864-85893883 Msa0580690:intron 45.0%
ATGGGATACTGCAGACACAA+GGG - chr4_1:85893865-85893884 Msa0580690:intron 45.0%
GAGGAATTAGCTCCATGCAA+AGG + chr4_1:85893903-85893922 None:intergenic 45.0%
ATTTGGTCTCTCATCAGCTG+AGG + chr4_1:85893922-85893941 None:intergenic 45.0%
! TGCTCCCTTAACGATGCTTT+TGG - chr4_1:85894283-85894302 Msa0580690:intron 45.0%
ACTCTTTCCACAACCAAGGA+AGG + chr4_1:85894715-85894734 None:intergenic 45.0%
CAAGAAGGACCATCCTCTTA+AGG - chr4_1:85894775-85894794 Msa0580690:intron 45.0%
CATAGCCAGCAGTTTGTGAT+TGG + chr4_1:85894999-85895018 None:intergenic 45.0%
CACATGCTAGATCCAGTTTC+TGG + chr4_1:85895313-85895332 None:intergenic 45.0%
CAGAAACTGGATCTAGCATG+TGG - chr4_1:85895311-85895330 Msa0580690:intron 45.0%
TCACACTTGGAAGGCCTAAT+TGG - chr4_1:85895492-85895511 Msa0580690:CDS 45.0%
CACACTTGGAAGGCCTAATT+GGG - chr4_1:85895493-85895512 Msa0580690:CDS 45.0%
ACACTTGGAAGGCCTAATTG+GGG - chr4_1:85895494-85895513 Msa0580690:CDS 45.0%
! GCATGGTCTTTTCCCCAATT+AGG + chr4_1:85895509-85895528 None:intergenic 45.0%
AGAAGGCCTCTTTCAGGATA+TGG - chr4_1:85895810-85895829 Msa0580690:intron 45.0%
CATGGTCCATATCCTGAAAG+AGG + chr4_1:85895819-85895838 None:intergenic 45.0%
AGGCAAAATAGGACCCCATT+TGG - chr4_1:85895849-85895868 Msa0580690:CDS 45.0%
GGCAAAATAGGACCCCATTT+GGG - chr4_1:85895850-85895869 Msa0580690:CDS 45.0%
! CCCCATTTGGGACCTTATAT+TGG - chr4_1:85895862-85895881 Msa0580690:CDS 45.0%
GGACCTTATATTGGACAGGT+GGG - chr4_1:85895871-85895890 Msa0580690:CDS 45.0%
TGACCCACCTGTCCAATATA+AGG + chr4_1:85895877-85895896 None:intergenic 45.0%
TCCAAGAGGCTTGTAGATTG+AGG - chr4_1:85895953-85895972 Msa0580690:CDS 45.0%
ACCTCAATCTACAAGCCTCT+TGG + chr4_1:85895957-85895976 None:intergenic 45.0%
TGCCCAATATGTTAGAAGCG+TGG - chr4_1:85896134-85896153 Msa0580690:CDS 45.0%
TCAAATCAAGGTTTCGGTGG+TGG - chr4_1:85896409-85896428 Msa0580690:five_prime_UTR 45.0%
!! GGTGGTGGATATATGCGATT+TGG - chr4_1:85896424-85896443 Msa0580690:five_prime_UTR 45.0%
! TGGATATATGCGATTTGGGG+TGG - chr4_1:85896429-85896448 Msa0580690:five_prime_UTR 45.0%
! GGATATATGCGATTTGGGGT+GGG - chr4_1:85896430-85896449 Msa0580690:five_prime_UTR 45.0%
! TATCAATGGCATTGGAGGCT+AGG - chr4_1:85896564-85896583 Msa0580690:five_prime_UTR 45.0%
AGGTCCTAGTGGTGGTTATT+CGG - chr4_1:85896584-85896603 Msa0580690:five_prime_UTR 45.0%
CTAGTGGTGGTTATTCGGTT+CGG - chr4_1:85896589-85896608 Msa0580690:five_prime_UTR 45.0%
TAGTGGTGGTTATTCGGTTC+GGG - chr4_1:85896590-85896609 Msa0580690:five_prime_UTR 45.0%
CTTGAAGACTTCTTCGGAGT+AGG - chr4_1:85896712-85896731 Msa0580690:five_prime_UTR 45.0%
!!! ATTTATTTATAAACTTTTAA+GGG - chr4_1:85894654-85894673 Msa0580690:intron 5.0%
!!! AAAGATTATTTTAAATTTAA+TGG + chr4_1:85896277-85896296 None:intergenic 5.0%
TGCACAGAGAGAGAAGCTAG+GGG + chr4_1:85892067-85892086 None:intergenic 50.0%
AAATCGCGGCCATAGATGTG+AGG + chr4_1:85892897-85892916 None:intergenic 50.0%
CACGCTGTTCAACTTCTTGG+TGG - chr4_1:85893008-85893027 Msa0580690:intron 50.0%
GTGACTCTTGACGTGTGCTA+GGG + chr4_1:85893350-85893369 None:intergenic 50.0%
AGTGACTCTTGACGTGTGCT+AGG + chr4_1:85893351-85893370 None:intergenic 50.0%
CGTCAAGAGTCACTTACAGG+TGG - chr4_1:85893357-85893376 Msa0580690:CDS 50.0%
ACCACTGACAAATCAGGAGC+AGG - chr4_1:85893644-85893663 Msa0580690:CDS 50.0%
! ACCTGCTCCTGATTTGTCAG+TGG + chr4_1:85893648-85893667 None:intergenic 50.0%
GGTTTGTCCTTCCTTGGTTG+TGG - chr4_1:85894705-85894724 Msa0580690:intron 50.0%
GGGACCTTATATTGGACAGG+TGG - chr4_1:85895870-85895889 Msa0580690:CDS 50.0%
! AGGTTAGGGGAGGTAATGGT+TGG + chr4_1:85896240-85896259 None:intergenic 50.0%
! TATATGCGATTTGGGGTGGG+AGG - chr4_1:85896433-85896452 Msa0580690:five_prime_UTR 50.0%
AAGGAGAAACAGCCTGGGAA+TGG - chr4_1:85896456-85896475 Msa0580690:five_prime_UTR 50.0%
CGAACCGAATAACCACCACT+AGG + chr4_1:85896591-85896610 None:intergenic 50.0%
! AGTGGTGGTTATTCGGTTCG+GGG - chr4_1:85896591-85896610 Msa0580690:five_prime_UTR 50.0%
TCGGAGTAGGTTGCCAATGA+AGG - chr4_1:85896725-85896744 Msa0580690:five_prime_UTR 50.0%
AAGGAACCTCAGTACTCCCC+AGG - chr4_1:85892027-85892046 Msa0580690:CDS 55.0%
!! AGAATGCCTGGGGAGTACTG+AGG + chr4_1:85892036-85892055 None:intergenic 55.0%
CACAGAGAGAGAAGCTAGGG+GGG + chr4_1:85892065-85892084 None:intergenic 55.0%
GCACAGAGAGAGAAGCTAGG+GGG + chr4_1:85892066-85892085 None:intergenic 55.0%
GGAGGAAGGAGAAACAGCCT+GGG - chr4_1:85896451-85896470 Msa0580690:five_prime_UTR 55.0%
! GCGTCATCGGTTGTGGACTT+GGG - chr4_1:85896478-85896497 Msa0580690:five_prime_UTR 55.0%
! TCATCGGTTGTGGACTTGGG+AGG - chr4_1:85896481-85896500 Msa0580690:five_prime_UTR 55.0%
ACTTGGGAGGAGGAGCTGTT+AGG - chr4_1:85896494-85896513 Msa0580690:five_prime_UTR 55.0%
CTTGGGAGGAGGAGCTGTTA+GGG - chr4_1:85896495-85896514 Msa0580690:five_prime_UTR 55.0%
TTGGGAGGAGGAGCTGTTAG+GGG - chr4_1:85896496-85896515 Msa0580690:five_prime_UTR 55.0%
CATTGGAGGCTAGGTCCTAG+TGG - chr4_1:85896573-85896592 Msa0580690:five_prime_UTR 55.0%
GGGGTGAGAGAGAATGCCTG+GGG + chr4_1:85892046-85892065 None:intergenic 60.0%
GGGGGTGAGAGAGAATGCCT+GGG + chr4_1:85892047-85892066 None:intergenic 60.0%
! TGCGATTTGGGGTGGGAGGA+AGG - chr4_1:85896437-85896456 Msa0580690:five_prime_UTR 60.0%
GGGAGGAAGGAGAAACAGCC+TGG - chr4_1:85896450-85896469 Msa0580690:five_prime_UTR 60.0%
CAGCCTGGGAATGGCGTCAT+CGG - chr4_1:85896465-85896484 Msa0580690:five_prime_UTR 60.0%
CAACCGATGACGCCATTCCC+AGG + chr4_1:85896471-85896490 None:intergenic 60.0%
! GGGAATGGCGTCATCGGTTG+TGG - chr4_1:85896471-85896490 Msa0580690:five_prime_UTR 60.0%
! GGCGTCATCGGTTGTGGACT+TGG - chr4_1:85896477-85896496 Msa0580690:five_prime_UTR 60.0%
TCGGTTGTGGACTTGGGAGG+AGG - chr4_1:85896484-85896503 Msa0580690:five_prime_UTR 60.0%
! GGAGGAGCTGTTAGGGGTGT+AGG - chr4_1:85896502-85896521 Msa0580690:five_prime_UTR 60.0%
TGGAGGCTAGGTCCTAGTGG+TGG - chr4_1:85896576-85896595 Msa0580690:five_prime_UTR 60.0%
GGGGGGTGAGAGAGAATGCC+TGG + chr4_1:85892048-85892067 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 85892014 85896851 85892014 ID=Msa0580690;Name=Msa0580690
chr4_1 mRNA 85892014 85896851 85892014 ID=Msa0580690-mRNA-1;Parent=Msa0580690;Name=Msa0580690-mRNA-1;_AED=0.24;_eAED=0.24;_QI=526|0.62|0.55|0.66|1|1|9|0|418
chr4_1 exon 85892014 85892146 85892014 ID=Msa0580690-mRNA-1:exon:31685;Parent=Msa0580690-mRNA-1
chr4_1 exon 85892249 85892313 85892249 ID=Msa0580690-mRNA-1:exon:31684;Parent=Msa0580690-mRNA-1
chr4_1 exon 85892355 85892463 85892355 ID=Msa0580690-mRNA-1:exon:31683;Parent=Msa0580690-mRNA-1
chr4_1 exon 85893307 85893431 85893307 ID=Msa0580690-mRNA-1:exon:31682;Parent=Msa0580690-mRNA-1
chr4_1 exon 85893582 85893681 85893582 ID=Msa0580690-mRNA-1:exon:31681;Parent=Msa0580690-mRNA-1
chr4_1 exon 85894895 85895003 85894895 ID=Msa0580690-mRNA-1:exon:31680;Parent=Msa0580690-mRNA-1
chr4_1 exon 85895200 85895239 85895200 ID=Msa0580690-mRNA-1:exon:31679;Parent=Msa0580690-mRNA-1
chr4_1 exon 85895490 85895566 85895490 ID=Msa0580690-mRNA-1:exon:31678;Parent=Msa0580690-mRNA-1
chr4_1 exon 85895827 85896851 85895827 ID=Msa0580690-mRNA-1:exon:31677;Parent=Msa0580690-mRNA-1
chr4_1 five_prime_UTR 85896326 85896851 85896326 ID=Msa0580690-mRNA-1:five_prime_utr;Parent=Msa0580690-mRNA-1
chr4_1 CDS 85895827 85896325 85895827 ID=Msa0580690-mRNA-1:cds;Parent=Msa0580690-mRNA-1
chr4_1 CDS 85895490 85895566 85895490 ID=Msa0580690-mRNA-1:cds;Parent=Msa0580690-mRNA-1
chr4_1 CDS 85895200 85895239 85895200 ID=Msa0580690-mRNA-1:cds;Parent=Msa0580690-mRNA-1
chr4_1 CDS 85894895 85895003 85894895 ID=Msa0580690-mRNA-1:cds;Parent=Msa0580690-mRNA-1
chr4_1 CDS 85893582 85893681 85893582 ID=Msa0580690-mRNA-1:cds;Parent=Msa0580690-mRNA-1
chr4_1 CDS 85893307 85893431 85893307 ID=Msa0580690-mRNA-1:cds;Parent=Msa0580690-mRNA-1
chr4_1 CDS 85892355 85892463 85892355 ID=Msa0580690-mRNA-1:cds;Parent=Msa0580690-mRNA-1
chr4_1 CDS 85892249 85892313 85892249 ID=Msa0580690-mRNA-1:cds;Parent=Msa0580690-mRNA-1
chr4_1 CDS 85892014 85892146 85892014 ID=Msa0580690-mRNA-1:cds;Parent=Msa0580690-mRNA-1
Gene Sequence

>Msa0580690

ATGTTCACTAATAATTCTTCACATCCTAAAATGCATACTTTATTTTCACCTTTGTTAGAACCAGACCTATCTTTAAACATAAGTCTTCCTTCTAATATTTCTGATTCTGAACCCAAAGGAATAACAAAACCACTTTATAATGATAATATATGTTCAATATCAACTACTTCTGATTCAGCTAGTAGTGGAAGTGAGTTAAGCCATGAAAATCCCTTCATCTATCCTCATCAACGTGACCCAACATTGAGATTAGGCTTTGGAAATTCAGATTTGATGAATCCGCATCATCATAATCATCACCTTCATCGTCATCAAGTGCAAGGTGTATCAAGAAACTTTAACCAACACTTTCAACCTCACATCTATGGCCGCGATTTCAAGCGAAATACAAGAGTCGTTAATGGTGTTAAAAGAAGTGTTAGAGCTCCAAGAATGAGATGGACTACAACCCTTCATTCCCATTTTGTTCACGCTGTTCAACTTCTTGGTGGTCATGAAAGAGCAACACCAAAATCTGTGTTAGAGTTAATGAATGTGAAGGATCTAACCCTAGCACACGTCAAGAGTCACTTACAGATGTATAGAACAGTGAAGACCACTGACAAATCAGGAGCAGGTAATGGGATACTGCAGACACAAGGGATTAATATTGTTCCTTTGCATGGAGCTAATTCCTCAGCTGATGAGAGACCAAATTTACCTCAACCACTTCAAAATTCACTTAGGACATCTTGGCAACCATCAATAGAGACAAATACAAACAATACTGAAGAAAAATCCGAAATTGGTTTGACGTATTCTAATTTGAAGGAAAATGATACCATGGTGAAGAGGTTGGATTCTGCCCAATTGACATGTTCAGACACTATGATTGACTTAGAATTCACACTTGGAAGGCCTAATTGGGGAAAAGACCATGCTGAATCATCAAGAGAATTAGCTCTTCTTAATATTCAATCAAATCAAGGTTTCGGTGGTGGATATATGCGATTTGGGGTGGGAGGAAGGAGAAACAGCCTGGGAATGGCGTCATCGGTTGTGGACTTGGGAGGAGGAGCTCATAATTCTACATATCAATGGCATTGGAGGCTAGGTCCTAGTGGTGGTTATTCGGTTCGGGGCATACTTCTTCGGAGTAGGTTGCCAATGAAGGATAATTTGGTGGTGCGCGACATTCTTTCTCACGACAATCAGTTATTCATGACTAGGTGTGGAGGCTTTGAGACTGCTCAACATCTATTTCTGTTTTGCCCCTGA
Protein sequence

>Msa0580690

MFTNNSSHPKMHTLFSPLLEPDLSLNISLPSNISDSEPKGITKPLYNDNICSISTTSDSASSGSELSHENPFIYPHQRDPTLRLGFGNSDLMNPHHHNHHLHRHQVQGVSRNFNQHFQPHIYGRDFKRNTRVVNGVKRSVRAPRMRWTTTLHSHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKTTDKSGAGNGILQTQGINIVPLHGANSSADERPNLPQPLQNSLRTSWQPSIETNTNNTEEKSEIGLTYSNLKENDTMVKRLDSAQLTCSDTMIDLEFTLGRPNWGKDHAESSRELALLNIQSNQGFGGGYMRFGVGGRRNSLGMASSVVDLGGGAHNSTYQWHWRLGPSGGYSVRGILLRSRLPMKDNLVVRDILSHDNQLFMTRCGGFETAQHLFLFCP*