AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0051260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0051260 MtrunA17_Chr1g0154251 98.246 456 8 0 1 456 1 456 0.0 938
Msa0051260 MtrunA17_Chr1g0154211 49.357 389 160 10 10 393 6 362 6.87e-111 333
Msa0051260 MtrunA17_Chr1g0154241 59.643 280 99 5 7 285 2 268 1.09e-108 322
Msa0051260 MtrunA17_Chr1g0154101 43.779 434 185 12 11 396 168 590 3.02e-96 308
Msa0051260 MtrunA17_Chr1g0154101 69.942 173 44 3 6 177 4 169 3.75e-73 246
Msa0051260 MtrunA17_Chr1g0154111 44.961 387 160 9 10 393 9 345 1.31e-94 297
Msa0051260 MtrunA17_Chr1g0154111 49.561 228 78 6 41 264 368 562 4.08e-55 193
Msa0051260 MtrunA17_Chr1g0154191 43.921 403 147 13 7 393 2 341 8.15e-89 275
Msa0051260 MtrunA17_Chr1g0154171 40.931 408 172 11 10 414 6 347 1.03e-81 256
Msa0051260 MtrunA17_Chr1g0154131 42.228 386 122 12 11 393 168 455 4.52e-78 251
Msa0051260 MtrunA17_Chr1g0154131 67.045 176 49 2 2 177 3 169 9.13e-71 231
Msa0051260 MtrunA17_Chr1g0154161 78.873 142 24 3 4 144 8 144 3.08e-72 231
Msa0051260 MtrunA17_Chr1g0154071 39.323 384 171 10 15 393 145 471 2.38e-69 228
Msa0051260 MtrunA17_Chr1g0154071 72.059 136 38 0 2 137 3 138 7.88e-63 211
Msa0051260 MtrunA17_Chr1g0154151 36.986 365 135 9 41 393 19 300 5.63e-60 199
Msa0051260 MtrunA17_Chr1g0154041 37.255 102 63 1 26 127 15 115 6.44e-15 77.0
Msa0051260 MtrunA17_Chr3g0131891 35.484 93 59 1 25 116 17 109 1.49e-14 74.7
Msa0051260 MtrunA17_Chr7g0233571 36.957 92 57 1 26 116 9 100 1.23e-13 70.1
Msa0051260 MtrunA17_Chr7g0233561 35.870 92 58 1 25 115 16 107 1.55e-13 71.6
Msa0051260 MtrunA17_Chr7g0233531 40.000 75 45 0 42 116 2 76 2.57e-12 67.4
Msa0051260 MtrunA17_Chr7g0233541 36.709 79 50 0 42 120 2 80 1.88e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0051260 AT4G33280.3 35.208 409 232 9 4 410 3 380 5.29e-69 225
Msa0051260 AT4G33280.2 48.780 164 81 3 4 166 3 164 2.67e-47 165
Msa0051260 AT4G33280.1 52.817 142 64 3 4 144 3 142 2.83e-45 161
Msa0051260 AT4G33280.1 27.727 220 130 5 216 410 104 319 4.72e-19 88.6
Msa0051260 AT3G18990.1 24.543 383 225 13 38 415 18 341 2.55e-23 100
Msa0051260 AT3G18990.2 24.538 379 222 13 38 411 18 337 6.51e-23 100
Msa0051260 AT4G34400.2 31.293 147 94 2 27 173 17 156 2.08e-18 87.4
Msa0051260 AT4G34400.1 31.293 147 94 2 27 173 17 156 2.08e-18 87.4
Msa0051260 AT3G06160.5 28.017 232 124 8 27 255 11 202 3.00e-16 79.7
Msa0051260 AT3G06160.4 28.017 232 124 8 27 255 11 202 3.00e-16 79.7
Msa0051260 AT3G06160.3 28.017 232 124 8 27 255 11 202 3.00e-16 79.7
Msa0051260 AT3G06160.1 27.155 232 126 7 27 255 26 217 3.21e-16 80.1
Msa0051260 AT3G06160.2 27.155 232 126 7 27 255 70 261 4.23e-16 80.1
Msa0051260 AT3G06220.1 33.000 100 65 2 27 126 11 108 3.27e-14 71.2
Msa0051260 AT1G49480.3 28.824 170 111 5 247 415 66 226 1.05e-12 67.8
Msa0051260 AT1G49480.1 28.824 170 111 5 247 415 66 226 1.05e-12 67.8
Msa0051260 AT1G49480.2 28.824 170 111 5 247 415 66 226 1.05e-12 67.8
Msa0051260 AT3G53310.1 37.500 80 50 0 37 116 21 100 3.17e-12 67.4
Msa0051260 AT5G57720.1 35.955 89 56 1 27 114 13 101 5.05e-11 63.9

Find 137 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTTTAGTATCCACTTATT+AGG 0.155011 1_2:+5357831 None:intergenic
CTCAGGAGAAAGCTCTTAAT+TGG 0.185662 1_2:-5359109 Msa0051260:CDS
CAATGGCCTCCAGTTCTGTT+TGG 0.239462 1_2:+5357484 None:intergenic
CTTGGGAAGAAGACATTTAT+TGG 0.243378 1_2:-5360612 Msa0051260:CDS
TGAAATGAATGAATTGAAAA+TGG 0.249343 1_2:+5360587 None:intergenic
GACATTGTTTGAAAATGTTT+TGG 0.262691 1_2:+5359754 None:intergenic
TGAAATGGGAAAAGAGTTAA+AGG 0.276728 1_2:+5360701 None:intergenic
AGCAGAATCAGATATGAATT+AGG 0.282702 1_2:+5360673 None:intergenic
GTATATAGTTCCTGCGTCTT+TGG 0.290182 1_2:+5358155 None:intergenic
ATGAATTAGGGTTTATGAAA+TGG 0.297100 1_2:+5360686 None:intergenic
CTCAAGCCCCTCTTCTTTCC+TGG 0.311310 1_2:+5357555 None:intergenic
ATCCACCACCTTGTTCAGTT+TGG 0.318706 1_2:+5359465 None:intergenic
TGTGACAGGCCTTCTATTTG+AGG 0.325138 1_2:+5358133 None:intergenic
CGTAACAATGGAGGACTTAC+TGG 0.329858 1_2:-5357729 Msa0051260:CDS
AATGGCCTCCAGTTCTGTTT+GGG 0.333107 1_2:+5357485 None:intergenic
GGTTTAGTATCCACTTATTA+GGG 0.333478 1_2:+5357832 None:intergenic
TCCACCACCTTGTTCAGTTT+GGG 0.342784 1_2:+5359466 None:intergenic
GCAGAATCAGATATGAATTA+GGG 0.355464 1_2:+5360674 None:intergenic
TTGTCCGTTTACCAGTTGTT+TGG 0.357600 1_2:+5359201 None:intergenic
TGAATTAGGGTTTATGAAAT+GGG 0.358225 1_2:+5360687 None:intergenic
CCTGAAAATGTGGTCCTAAA+AGG 0.366161 1_2:-5359719 Msa0051260:CDS
TTCAGTTTGGGCGGCAGCCT+CGG 0.376086 1_2:+5359478 None:intergenic
TGTCCGTTTACCAGTTGTTT+GGG 0.377248 1_2:+5359202 None:intergenic
ATATCTGATTCTGCTTCAAA+TGG 0.377259 1_2:-5360665 Msa0051260:exon
GGTGGAGTGACATGGAATAT+AGG 0.380908 1_2:-5359692 Msa0051260:CDS
TGCGTCTTTGGAGAGCCCTT+TGG 0.384532 1_2:+5358167 None:intergenic
GTACCTTCTGAAACTACTAA+TGG 0.385556 1_2:-5359317 Msa0051260:CDS
CACCGTTGTACTTAAAGAAC+AGG 0.391008 1_2:+5359585 None:intergenic
GGAGAGCCCTTTGGAGACGC+TGG 0.392912 1_2:+5358176 None:intergenic
TATATGTTAACAGTTGTGTT+AGG 0.411885 1_2:-5357407 Msa0051260:three_prime_UTR
CGGTGCTGCCCAAACAGAAC+TGG 0.423283 1_2:-5357493 Msa0051260:CDS
GTGGTGGGTGTAGCAGATCT+TGG 0.425709 1_2:-5360630 Msa0051260:CDS
CCCTTTGGAGACGCTGGGGC+AGG 0.428621 1_2:+5358182 None:intergenic
GGTCTTCCTCTCTTCTTACT+CGG 0.429301 1_2:+5359149 None:intergenic
GAAGTCAATACTCCTTCTAA+TGG 0.429462 1_2:-5359404 Msa0051260:CDS
AACACACGTCAAACTCTTCA+AGG 0.430454 1_2:+5357676 None:intergenic
ACACAATTACGCACCTTCAA+TGG 0.435249 1_2:+5357467 None:intergenic
AACTATATACCTCAAATAGA+AGG 0.436916 1_2:-5358142 Msa0051260:CDS
GCATCAGACATTAATTGCTC+AGG 0.442937 1_2:+5359260 None:intergenic
GTGGAGTGACATGGAATATA+GGG 0.454700 1_2:-5359691 Msa0051260:CDS
CAATTGTTGAGCAAAATCAT+TGG 0.454715 1_2:+5360549 None:intergenic
CAGTTCTGTTTGGGCAGCAC+CGG 0.454969 1_2:+5357494 None:intergenic
GAGAGCCCTTTGGAGACGCT+GGG 0.458201 1_2:+5358177 None:intergenic
CGTCCCAAACAACTGGTAAA+CGG 0.458610 1_2:-5359205 Msa0051260:CDS
ACTGTTCCGTCCCAAACAAC+TGG 0.462388 1_2:-5359212 Msa0051260:CDS
CCTTCATCAACACCATTAGA+AGG 0.467182 1_2:+5359392 None:intergenic
AAGAGGGGCTTGAGTTCTAC+AGG 0.469641 1_2:-5357546 Msa0051260:CDS
TCCTGAGAATTAGACGTTCG+TGG 0.470182 1_2:+5359125 None:intergenic
GTCTGAGGAAGTTACGTTGT+TGG 0.479297 1_2:-5357443 Msa0051260:three_prime_UTR
GCCACGAACGTCTAATTCTC+AGG 0.479478 1_2:-5359126 Msa0051260:CDS
TCAGGAGAAAGCTCTTAATT+GGG 0.480968 1_2:-5359108 Msa0051260:CDS
GGAGAATGCACCGCAGTAAG+AGG 0.480989 1_2:+5357576 None:intergenic
ACAGACGCAACAGCATAAAC+AGG 0.486042 1_2:+5359173 None:intergenic
TCCATTGCTTTCTTGAAACA+TGG 0.489740 1_2:-5357166 Msa0051260:three_prime_UTR
ACAGAACTGGAGGCCATTGA+AGG 0.495326 1_2:-5357480 Msa0051260:CDS
TACGCATGGGTAAGAATGAA+TGG 0.495657 1_2:-5357779 Msa0051260:CDS
CTTACTGCGGTGCATTCTCC+AGG 0.496763 1_2:-5357573 Msa0051260:CDS
TGGGTAAGAATGAATGGCTT+GGG 0.497908 1_2:-5357773 Msa0051260:CDS
ACTTGTCTAATCTTCTACCT+AGG 0.504369 1_2:-5357321 Msa0051260:three_prime_UTR
ATGGGTAAGAATGAATGGCT+TGG 0.510570 1_2:-5357774 Msa0051260:CDS
TATCTGATTCTGCTTCAAAT+GGG 0.511947 1_2:-5360664 Msa0051260:exon
GTTTGGGACGGAACAGTTGT+TGG 0.513367 1_2:+5359218 None:intergenic
ACCTGCCCCAGCGTCTCCAA+AGG 0.514129 1_2:-5358183 Msa0051260:CDS
GTCTTCCTCTCTTCTTACTC+GGG 0.516995 1_2:+5359150 None:intergenic
GAAATGAATGAATTGAAAAT+GGG 0.517659 1_2:+5360588 None:intergenic
CCTTCTAATGGTGTTGATGA+AGG 0.519085 1_2:-5359392 Msa0051260:CDS
ACTAGTCATTCCCTAATAAG+TGG 0.519210 1_2:-5357842 Msa0051260:intron
GTTTCAGAAGGTACAGCAAA+TGG 0.520424 1_2:+5359326 None:intergenic
CTTCAAATGGGATTACAAAA+CGG 0.520715 1_2:-5360652 Msa0051260:exon
TGGTGGGTGTAGCAGATCTT+GGG 0.526446 1_2:-5360629 Msa0051260:CDS
CAACGGTGAATCGTTGTTTG+AGG 0.529531 1_2:-5359570 Msa0051260:CDS
AAAGCTCTTAATTGGGTGAC+TGG 0.530787 1_2:-5359101 Msa0051260:intron
ATATTCCATGTCACTCCACC+AGG 0.530935 1_2:+5359695 None:intergenic
ATGGGATTACAAAACGGTGG+TGG 0.534211 1_2:-5360646 Msa0051260:CDS
CCTGCCCCAGCGTCTCCAAA+GGG 0.534279 1_2:-5358182 Msa0051260:CDS
ATGTCATGCAAATGACCAGC+TGG 0.547589 1_2:+5357645 None:intergenic
ATGGAGGACTTACTGGTGGT+TGG 0.548078 1_2:-5357722 Msa0051260:CDS
TCAAGATGTGATATTACGCA+TGG 0.548312 1_2:-5357793 Msa0051260:CDS
CATCAGACATTAATTGCTCA+GGG 0.548758 1_2:+5359261 None:intergenic
CGTTTACCAGTTGTTTGGGA+CGG 0.549463 1_2:+5359206 None:intergenic
TGGCGAGAGTTTCTGTGAGA+AGG 0.555646 1_2:-5359534 Msa0051260:CDS
AAGGTCCTGGTGGAGTGACA+TGG 0.566287 1_2:-5359700 Msa0051260:CDS
TGTATACAAGAGATTCTTCG+TGG 0.566958 1_2:-5358027 Msa0051260:intron
AGTCGTTCTCTTTCAAAGAG+TGG 0.570224 1_2:+5359609 None:intergenic
AATCTCTTGTATACATGTGA+AGG 0.571018 1_2:+5358035 None:intergenic
CTTGAGACGATGGAGCAAGA+TGG 0.572879 1_2:+5357811 None:intergenic
TTTCCATTAGTAGTTTCAGA+AGG 0.573429 1_2:+5359314 None:intergenic
GAGTTCTACAGGAAAGAAGA+GGG 0.574907 1_2:-5357535 Msa0051260:CDS
AAAGAAGCTGCCTGAAAATG+TGG 0.583717 1_2:-5359729 Msa0051260:CDS
GTGTGTTTGTTCAAACCAGC+TGG 0.583771 1_2:-5357660 Msa0051260:CDS
GCTGCCGCCCAAACTGAACA+AGG 0.584723 1_2:-5359473 Msa0051260:CDS
GCATTCTCCAGGAAAGAAGA+GGG 0.592388 1_2:-5357562 Msa0051260:CDS
TTCCTGTTCTTTAAGTACAA+CGG 0.596255 1_2:-5359587 Msa0051260:CDS
AAACAACTGGTAAACGGACA+AGG 0.598332 1_2:-5359199 Msa0051260:CDS
TGCATTCTCCAGGAAAGAAG+AGG 0.603183 1_2:-5357563 Msa0051260:CDS
TGCTGCCCAAACAGAACTGG+AGG 0.604957 1_2:-5357490 Msa0051260:CDS
AGTTACAAGCAAGCTCTCCT+CGG 0.605075 1_2:+5358064 None:intergenic
GAAAGCAATGGACAAACACT+TGG 0.605736 1_2:+5357177 None:intergenic
AAGGTACAGCAAATGGCACT+CGG 0.606956 1_2:+5359333 None:intergenic
CATAATATTCGTAACAATGG+AGG 0.607755 1_2:-5357738 Msa0051260:CDS
AGGTGGTGGATGTTCTAGCA+AGG 0.607880 1_2:-5359453 Msa0051260:CDS
GCCCAAACTGAACAAGGTGG+TGG 0.609494 1_2:-5359467 Msa0051260:CDS
AATGTGGTCCTAAAAGGTCC+TGG 0.611828 1_2:-5359713 Msa0051260:CDS
TTACACATAGTTAATTACCT+AGG 0.613624 1_2:+5357304 None:intergenic
GTGGATGTTCTAGCAAGGGA+AGG 0.613993 1_2:-5359448 Msa0051260:CDS
TGAGTTCTACAGGAAAGAAG+AGG 0.614505 1_2:-5357536 Msa0051260:CDS
TGGGATTACAAAACGGTGGT+GGG 0.615464 1_2:-5360645 Msa0051260:CDS
TATCATAATATTCGTAACAA+TGG 0.617731 1_2:-5357741 Msa0051260:CDS
ACCACCTTGTTCAGTTTGGG+CGG 0.621987 1_2:+5359469 None:intergenic
GGTGGTGGATGTTCTAGCAA+GGG 0.623883 1_2:-5359452 Msa0051260:CDS
GTGCGTAATTGTGTCGTCTG+AGG 0.624827 1_2:-5357458 Msa0051260:exon
AAAGGGCTCTCCAAAGACGC+AGG 0.627367 1_2:-5358165 Msa0051260:CDS
CAAGATGTGATATTACGCAT+GGG 0.629761 1_2:-5357792 Msa0051260:CDS
AGACATTAATTGCTCAGGGG+TGG 0.633255 1_2:+5359265 None:intergenic
AATATCACATCTTGAGACGA+TGG 0.639490 1_2:+5357801 None:intergenic
GGAGATTACTCCTCTTACTG+CGG 0.639926 1_2:-5357586 Msa0051260:CDS
AGAGCCCTTTGGAGACGCTG+GGG 0.640012 1_2:+5358178 None:intergenic
TCGGAAATGTGGGCACGCCG+AGG 0.642864 1_2:-5359495 Msa0051260:CDS
CGAGAGTTTCTGTGAGAAGG+CGG 0.644557 1_2:-5359531 Msa0051260:CDS
GGAGTTAAGAGAACACTGAC+CGG 0.646401 1_2:-5357513 Msa0051260:CDS
TGGATGTTCTAGCAAGGGAA+GGG 0.650202 1_2:-5359447 Msa0051260:CDS
AAGGGACACAAACAATTCTG+TGG 0.651587 1_2:-5359429 Msa0051260:CDS
GCCCGTGAATGAGAATATGA+AGG 0.654121 1_2:+5357137 None:intergenic
GGCTCAGGCAGCATGTACCG+AGG 0.663486 1_2:-5358081 Msa0051260:CDS
GTGGTCCTAAAAGGTCCTGG+TGG 0.664078 1_2:-5359710 Msa0051260:CDS
TCCATGTTTCAAGAAAGCAA+TGG 0.674558 1_2:+5357165 None:intergenic
ATAGGGCTGACAAGTAGAGA+CGG 0.678435 1_2:-5359674 Msa0051260:CDS
TCTGTCCCGAGTAAGAAGAG+AGG 0.684134 1_2:-5359155 Msa0051260:CDS
AACAATGGAGGACTTACTGG+TGG 0.686037 1_2:-5357726 Msa0051260:CDS
TGAGAATTAGACGTTCGTGG+CGG 0.689016 1_2:+5359128 None:intergenic
AGTTCTACAGGAAAGAAGAG+GGG 0.697073 1_2:-5357534 Msa0051260:CDS
CAAATGGGATTACAAAACGG+TGG 0.705155 1_2:-5360649 Msa0051260:CDS
CATTCTCCAGGAAAGAAGAG+GGG 0.708428 1_2:-5357561 Msa0051260:CDS
CGTGAATGAGAATATGAAGG+TGG 0.720594 1_2:+5357140 None:intergenic
GCCGCCCAAACTGAACAAGG+TGG 0.731431 1_2:-5359470 Msa0051260:CDS
ATCAGACATTAATTGCTCAG+GGG 0.741591 1_2:+5359262 None:intergenic
CAACTGGTAAACGGACAAGG+AGG 0.752519 1_2:-5359196 Msa0051260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTAATAAAAATAATCATAAT+TGG - chr1_2:5359385-5359404 Msa0051260:CDS 10.0%
!! TTCAGAAAAAAAAAATTATG+TGG + chr1_2:5357676-5357695 None:intergenic 15.0%
!!! TTATTTTGATTTTGAATAAC+CGG - chr1_2:5359196-5359215 Msa0051260:CDS 15.0%
!! AAGTTAAAAAAGTAAAGTAA+GGG + chr1_2:5360034-5360053 None:intergenic 15.0%
!! ATAAAAAAAAAAACACAATG+AGG + chr1_2:5360091-5360110 None:intergenic 15.0%
!! TATAATAAAGTTAAAAATGC+AGG + chr1_2:5360124-5360143 None:intergenic 15.0%
!! GAAATGAATGAATTGAAAAT+GGG + chr1_2:5357437-5357456 None:intergenic 20.0%
!! TGAAATGAATGAATTGAAAA+TGG + chr1_2:5357438-5357457 None:intergenic 20.0%
!!! GTCTTTTTAAATAATGTTGT+AGG - chr1_2:5357836-5357855 Msa0051260:CDS 20.0%
!! CATATACTTGATATTATGAA+TGG - chr1_2:5358049-5358068 Msa0051260:CDS 20.0%
!!! ACATTGTTTGAAAATGTTTT+GGG + chr1_2:5358270-5358289 None:intergenic 20.0%
!!! TTTGAGGTTTTAATATTTGA+TGG - chr1_2:5358468-5358487 Msa0051260:intron 20.0%
!! AATCTCTCATTACTAAAATT+TGG + chr1_2:5359414-5359433 None:intergenic 20.0%
!!! TTTTAGTAATGAGAGATTTT+TGG - chr1_2:5359416-5359435 Msa0051260:CDS 20.0%
!!! TTTAGTAATGAGAGATTTTT+GGG - chr1_2:5359417-5359436 Msa0051260:CDS 20.0%
!! CAAGTTAAAAAAGTAAAGTA+AGG + chr1_2:5360035-5360054 None:intergenic 20.0%
!! TATCATAATATTCGTAACAA+TGG - chr1_2:5360281-5360300 Msa0051260:intron 20.0%
!!! TCAGTTTTGCAAAATAATTA+GGG + chr1_2:5360801-5360820 None:intergenic 20.0%
!!! TTCAGTTTTGCAAAATAATT+AGG + chr1_2:5360802-5360821 None:intergenic 20.0%
! TGAATTAGGGTTTATGAAAT+GGG + chr1_2:5357338-5357357 None:intergenic 25.0%
! ATGAATTAGGGTTTATGAAA+TGG + chr1_2:5357339-5357358 None:intergenic 25.0%
!!! TGTCAAGTTTTTTTGATGAA+AGG - chr1_2:5357769-5357788 Msa0051260:CDS 25.0%
!! GAACTATGCATTTACATTTT+AGG - chr1_2:5357936-5357955 Msa0051260:intron 25.0%
!!! GTAGGTTATAATTGACTTTT+AGG - chr1_2:5358155-5358174 Msa0051260:CDS 25.0%
!!! GAAGTTTATATTTTGTTTGC+AGG - chr1_2:5358239-5358258 Msa0051260:intron 25.0%
!! GACATTGTTTGAAAATGTTT+TGG + chr1_2:5358271-5358290 None:intergenic 25.0%
! AAAGAAACATTTAACACTTG+TGG - chr1_2:5358972-5358991 Msa0051260:intron 25.0%
!!! GTGACATTTGTTGTTTATAA+TGG + chr1_2:5359098-5359117 None:intergenic 25.0%
! AGTTACATGAAATTGGAATT+TGG + chr1_2:5359238-5359257 None:intergenic 25.0%
! CCTATATAGTTACATGAAAT+TGG + chr1_2:5359245-5359264 None:intergenic 25.0%
! CCAATTTCATGTAACTATAT+AGG - chr1_2:5359242-5359261 Msa0051260:CDS 25.0%
!!! GATATTCCATCATTACTTTT+TGG - chr1_2:5359307-5359326 Msa0051260:CDS 25.0%
! AACTATATACCTCAAATAGA+AGG - chr1_2:5359880-5359899 Msa0051260:intron 25.0%
! TATATGTTAACAGTTGTGTT+AGG - chr1_2:5360615-5360634 Msa0051260:CDS 25.0%
!! ATATCGTTTTATGTCTGTTT+TGG - chr1_2:5360658-5360677 Msa0051260:exon 25.0%
! TTACACATAGTTAATTACCT+AGG + chr1_2:5360721-5360740 None:intergenic 25.0%
! GTACAAAGAAGCAATTTTTG+TGG + chr1_2:5357216-5357235 None:intergenic 30.0%
!!! TACTGCTTTTTTCTGATTCT+AGG - chr1_2:5357233-5357252 Msa0051260:three_prime_UTR 30.0%
!!! ACTGCTTTTTTCTGATTCTA+GGG - chr1_2:5357234-5357253 Msa0051260:three_prime_UTR 30.0%
TGAAATGGGAAAAGAGTTAA+AGG + chr1_2:5357324-5357343 None:intergenic 30.0%
GCAGAATCAGATATGAATTA+GGG + chr1_2:5357351-5357370 None:intergenic 30.0%
AGCAGAATCAGATATGAATT+AGG + chr1_2:5357352-5357371 None:intergenic 30.0%
ATATCTGATTCTGCTTCAAA+TGG - chr1_2:5357357-5357376 Msa0051260:three_prime_UTR 30.0%
TATCTGATTCTGCTTCAAAT+GGG - chr1_2:5357358-5357377 Msa0051260:three_prime_UTR 30.0%
CTTCAAATGGGATTACAAAA+CGG - chr1_2:5357370-5357389 Msa0051260:three_prime_UTR 30.0%
CAATTGTTGAGCAAAATCAT+TGG + chr1_2:5357476-5357495 None:intergenic 30.0%
! CAATGATTTTGCTCAACAAT+TGG - chr1_2:5357474-5357493 Msa0051260:CDS 30.0%
AAATTTCATCACTTTCAGAG+GGG + chr1_2:5357575-5357594 None:intergenic 30.0%
CAAATTTCATCACTTTCAGA+GGG + chr1_2:5357576-5357595 None:intergenic 30.0%
! CTCTGAAAGTGATGAAATTT+GGG - chr1_2:5357575-5357594 Msa0051260:CDS 30.0%
TTGCAAGAAAGTTTGATCTT+TGG - chr1_2:5357729-5357748 Msa0051260:CDS 30.0%
TGATTTATGTGGTTGATCTT+GGG - chr1_2:5357996-5358015 Msa0051260:intron 30.0%
!!! ATGAATGGCTGTTTTTGAAT+CGG - chr1_2:5358064-5358083 Msa0051260:CDS 30.0%
TAATATTGACATGTTGACAC+CGG + chr1_2:5358111-5358130 None:intergenic 30.0%
TTCCTGTTCTTTAAGTACAA+CGG - chr1_2:5358435-5358454 Msa0051260:intron 30.0%
!!! CTTATTTTGTTCGGAAATGT+GGG - chr1_2:5358517-5358536 Msa0051260:intron 30.0%
TTTCCATTAGTAGTTTCAGA+AGG + chr1_2:5358711-5358730 None:intergenic 30.0%
! TTTTTACTTGTGAATGACGA+CGG - chr1_2:5358949-5358968 Msa0051260:intron 30.0%
TTTAACACTTGTGGTAAAAG+CGG - chr1_2:5358981-5359000 Msa0051260:intron 30.0%
GTCTTAACTATTGCATTCAT+TGG + chr1_2:5359057-5359076 None:intergenic 30.0%
!! TTGTTGTTTATAATGGTCCA+CGG + chr1_2:5359091-5359110 None:intergenic 30.0%
! AATAACCGGAACATTTTCAA+AGG - chr1_2:5359210-5359229 Msa0051260:CDS 30.0%
! ATAACCGGAACATTTTCAAA+GGG - chr1_2:5359211-5359230 Msa0051260:CDS 30.0%
CATGTAACTATATAGGTGAT+AGG - chr1_2:5359249-5359268 Msa0051260:CDS 30.0%
CACTCATTCATTCAAACATT+CGG + chr1_2:5359287-5359306 None:intergenic 30.0%
! TGTGGTCTAGAATTAAATTG+AGG + chr1_2:5359336-5359355 None:intergenic 30.0%
CTCTCATTACTAAAATTTGG+TGG + chr1_2:5359411-5359430 None:intergenic 30.0%
TGAGATTGAAAAAACTCTTC+AGG - chr1_2:5359917-5359936 Msa0051260:intron 30.0%
AATCTCTTGTATACATGTGA+AGG + chr1_2:5359990-5360009 None:intergenic 30.0%
GGTTTAGTATCCACTTATTA+GGG + chr1_2:5360193-5360212 None:intergenic 30.0%
TGGTTTAGTATCCACTTATT+AGG + chr1_2:5360194-5360213 None:intergenic 30.0%
CATAATATTCGTAACAATGG+AGG - chr1_2:5360284-5360303 Msa0051260:intron 30.0%
! GTTTTGCAAAATAATTAGGG+TGG + chr1_2:5360798-5360817 None:intergenic 30.0%
CTTGGGAAGAAGACATTTAT+TGG - chr1_2:5357410-5357429 Msa0051260:three_prime_UTR 35.0%
CCAAATTTCATCACTTTCAG+AGG + chr1_2:5357577-5357596 None:intergenic 35.0%
! CCTCTGAAAGTGATGAAATT+TGG - chr1_2:5357574-5357593 Msa0051260:CDS 35.0%
TTTCATGCATGTGTCATGAT+AGG - chr1_2:5357963-5357982 Msa0051260:intron 35.0%
TTCATGCATGTGTCATGATA+GGG - chr1_2:5357964-5357983 Msa0051260:intron 35.0%
GGTCATGTTTGTGATTTATG+TGG - chr1_2:5357985-5358004 Msa0051260:intron 35.0%
GTGATTTATGTGGTTGATCT+TGG - chr1_2:5357995-5358014 Msa0051260:intron 35.0%
AGGCATTTAGTCTACTAAGA+TGG - chr1_2:5358175-5358194 Msa0051260:CDS 35.0%
!!! GCTTATTTTGTTCGGAAATG+TGG - chr1_2:5358516-5358535 Msa0051260:intron 35.0%
GAAGTCAATACTCCTTCTAA+TGG - chr1_2:5358618-5358637 Msa0051260:intron 35.0%
!! GTACCTTCTGAAACTACTAA+TGG - chr1_2:5358705-5358724 Msa0051260:intron 35.0%
ATCAGACATTAATTGCTCAG+GGG + chr1_2:5358763-5358782 None:intergenic 35.0%
CATCAGACATTAATTGCTCA+GGG + chr1_2:5358764-5358783 None:intergenic 35.0%
TCAGGAGAAAGCTCTTAATT+GGG - chr1_2:5358914-5358933 Msa0051260:intron 35.0%
CAGTAGACAGATATGTTTCT+TGG + chr1_2:5359120-5359139 None:intergenic 35.0%
! TAACCGGAACATTTTCAAAG+GGG - chr1_2:5359212-5359231 Msa0051260:CDS 35.0%
ATATAGGTGATAGGCAAAAG+TGG - chr1_2:5359258-5359277 Msa0051260:CDS 35.0%
TATAGGTGATAGGCAAAAGT+GGG - chr1_2:5359259-5359278 Msa0051260:CDS 35.0%
CGAATGTTTGAATGAATGAG+TGG - chr1_2:5359285-5359304 Msa0051260:CDS 35.0%
AGGACTCCAAAAAGTAATGA+TGG + chr1_2:5359316-5359335 None:intergenic 35.0%
CAAGTTTACTATGCTTCTTG+TGG + chr1_2:5359354-5359373 None:intergenic 35.0%
!!! AGATTTTTGGGTAGAAACAG+TGG - chr1_2:5359429-5359448 Msa0051260:CDS 35.0%
!! ACACTTAGCTGATGTTTTTG+TGG - chr1_2:5359553-5359572 Msa0051260:CDS 35.0%
! GCAGTTTTCTCACTTATCAA+AGG - chr1_2:5359602-5359621 Msa0051260:CDS 35.0%
! TCAATCTCATCTTTTGTGAC+AGG + chr1_2:5359906-5359925 None:intergenic 35.0%
GATTGAAAAAACTCTTCAGG+TGG - chr1_2:5359920-5359939 Msa0051260:intron 35.0%
TGTATACAAGAGATTCTTCG+TGG - chr1_2:5359995-5360014 Msa0051260:intron 35.0%
ACTAGTCATTCCCTAATAAG+TGG - chr1_2:5360180-5360199 Msa0051260:intron 35.0%
AATATCACATCTTGAGACGA+TGG + chr1_2:5360224-5360243 None:intergenic 35.0%
TCAAGATGTGATATTACGCA+TGG - chr1_2:5360229-5360248 Msa0051260:intron 35.0%
CAAGATGTGATATTACGCAT+GGG - chr1_2:5360230-5360249 Msa0051260:intron 35.0%
!!! GAGCATTTTTAGAGTTGTTG+AGG - chr1_2:5360415-5360434 Msa0051260:intron 35.0%
!! GTCTGTTTTGGATGTTATGA+TGG - chr1_2:5360670-5360689 Msa0051260:five_prime_UTR 35.0%
ACTTGTCTAATCTTCTACCT+AGG - chr1_2:5360701-5360720 Msa0051260:five_prime_UTR 35.0%
!!! GCAGTAGCTAGACTTTTTTA+AGG - chr1_2:5360751-5360770 Msa0051260:five_prime_UTR 35.0%
TCCATTGCTTTCTTGAAACA+TGG - chr1_2:5360856-5360875 Msa0051260:five_prime_UTR 35.0%
TCCATGTTTCAAGAAAGCAA+TGG + chr1_2:5360860-5360879 None:intergenic 35.0%
CAAATGGGATTACAAAACGG+TGG - chr1_2:5357373-5357392 Msa0051260:three_prime_UTR 40.0%
AGTTATGATCTTCGTAACGC+CGG - chr1_2:5358089-5358108 Msa0051260:CDS 40.0%
ACATGTCAATATTAGTGCCG+TGG - chr1_2:5358117-5358136 Msa0051260:CDS 40.0%
AAAGAAGCTGCCTGAAAATG+TGG - chr1_2:5358293-5358312 Msa0051260:intron 40.0%
!!! CCTTTTAGGACCACATTTTC+AGG + chr1_2:5358306-5358325 None:intergenic 40.0%
CCTGAAAATGTGGTCCTAAA+AGG - chr1_2:5358303-5358322 Msa0051260:intron 40.0%
GTGGAGTGACATGGAATATA+GGG - chr1_2:5358331-5358350 Msa0051260:intron 40.0%
! GCACATTTTACTTCACGCAA+GGG - chr1_2:5358370-5358389 Msa0051260:intron 40.0%
! ATTTTACTTCACGCAAGGGT+GGG - chr1_2:5358374-5358393 Msa0051260:intron 40.0%
AGTCGTTCTCTTTCAAAGAG+TGG + chr1_2:5358416-5358435 None:intergenic 40.0%
CACCGTTGTACTTAAAGAAC+AGG + chr1_2:5358440-5358459 None:intergenic 40.0%
AAGGGACACAAACAATTCTG+TGG - chr1_2:5358593-5358612 Msa0051260:intron 40.0%
CCTTCATCAACACCATTAGA+AGG + chr1_2:5358633-5358652 None:intergenic 40.0%
!! CCTTCTAATGGTGTTGATGA+AGG - chr1_2:5358630-5358649 Msa0051260:intron 40.0%
! GTTTCAGAAGGTACAGCAAA+TGG + chr1_2:5358699-5358718 None:intergenic 40.0%
GCATCAGACATTAATTGCTC+AGG + chr1_2:5358765-5358784 None:intergenic 40.0%
TGTCCGTTTACCAGTTGTTT+GGG + chr1_2:5358823-5358842 None:intergenic 40.0%
TTGTCCGTTTACCAGTTGTT+TGG + chr1_2:5358824-5358843 None:intergenic 40.0%
AAACAACTGGTAAACGGACA+AGG - chr1_2:5358823-5358842 Msa0051260:intron 40.0%
CTCAGGAGAAAGCTCTTAAT+TGG - chr1_2:5358913-5358932 Msa0051260:intron 40.0%
AAAGCTCTTAATTGGGTGAC+TGG - chr1_2:5358921-5358940 Msa0051260:intron 40.0%
TATCAAATCAATGTCCTGCC+AGG + chr1_2:5359483-5359502 None:intergenic 40.0%
TCAGCTAAGTGTCACAATGT+TGG + chr1_2:5359545-5359564 None:intergenic 40.0%
! ACTTATCAAAGGTGTGTCCA+GGG - chr1_2:5359613-5359632 Msa0051260:CDS 40.0%
! TTTTACCAGTGTCACATGTC+TGG - chr1_2:5359684-5359703 Msa0051260:CDS 40.0%
TGTCTGTGTTGTGTTTGTGT+TGG - chr1_2:5359707-5359726 Msa0051260:CDS 40.0%
!! ACATGGACTTGCTGTTAATG+TGG - chr1_2:5359784-5359803 Msa0051260:intron 40.0%
GTATATAGTTCCTGCGTCTT+TGG + chr1_2:5359870-5359889 None:intergenic 40.0%
TACGCATGGGTAAGAATGAA+TGG - chr1_2:5360243-5360262 Msa0051260:intron 40.0%
ATGGGTAAGAATGAATGGCT+TGG - chr1_2:5360248-5360267 Msa0051260:intron 40.0%
TGGGTAAGAATGAATGGCTT+GGG - chr1_2:5360249-5360268 Msa0051260:intron 40.0%
AACACACGTCAAACTCTTCA+AGG + chr1_2:5360349-5360368 None:intergenic 40.0%
TGAGTTCTACAGGAAAGAAG+AGG - chr1_2:5360486-5360505 Msa0051260:intron 40.0%
GAGTTCTACAGGAAAGAAGA+GGG - chr1_2:5360487-5360506 Msa0051260:intron 40.0%
AGTTCTACAGGAAAGAAGAG+GGG - chr1_2:5360488-5360507 Msa0051260:intron 40.0%
ACACAATTACGCACCTTCAA+TGG + chr1_2:5360558-5360577 None:intergenic 40.0%
GAAAGCAATGGACAAACACT+TGG + chr1_2:5360848-5360867 None:intergenic 40.0%
ATGGGATTACAAAACGGTGG+TGG - chr1_2:5357376-5357395 Msa0051260:three_prime_UTR 45.0%
TGGGATTACAAAACGGTGGT+GGG - chr1_2:5357377-5357396 Msa0051260:three_prime_UTR 45.0%
! TATTAGTGCCGTGGTTTGTG+TGG - chr1_2:5358126-5358145 Msa0051260:CDS 45.0%
! ATTAGTGCCGTGGTTTGTGT+GGG - chr1_2:5358127-5358146 Msa0051260:CDS 45.0%
AATGTGGTCCTAAAAGGTCC+TGG - chr1_2:5358309-5358328 Msa0051260:intron 45.0%
ATATTCCATGTCACTCCACC+AGG + chr1_2:5358330-5358349 None:intergenic 45.0%
GGTGGAGTGACATGGAATAT+AGG - chr1_2:5358330-5358349 Msa0051260:intron 45.0%
ATAGGGCTGACAAGTAGAGA+CGG - chr1_2:5358348-5358367 Msa0051260:intron 45.0%
! GGCACATTTTACTTCACGCA+AGG - chr1_2:5358369-5358388 Msa0051260:intron 45.0%
! CATTTTACTTCACGCAAGGG+TGG - chr1_2:5358373-5358392 Msa0051260:intron 45.0%
CAACGGTGAATCGTTGTTTG+AGG - chr1_2:5358452-5358471 Msa0051260:intron 45.0%
!!! AGGCGGCAGCTTATTTTGTT+CGG - chr1_2:5358508-5358527 Msa0051260:intron 45.0%
TCCACCACCTTGTTCAGTTT+GGG + chr1_2:5358559-5358578 None:intergenic 45.0%
ATCCACCACCTTGTTCAGTT+TGG + chr1_2:5358560-5358579 None:intergenic 45.0%
TGGATGTTCTAGCAAGGGAA+GGG - chr1_2:5358575-5358594 Msa0051260:intron 45.0%
AAGGTACAGCAAATGGCACT+CGG + chr1_2:5358692-5358711 None:intergenic 45.0%
AGACATTAATTGCTCAGGGG+TGG + chr1_2:5358760-5358779 None:intergenic 45.0%
CGTTTACCAGTTGTTTGGGA+CGG + chr1_2:5358819-5358838 None:intergenic 45.0%
CGTCCCAAACAACTGGTAAA+CGG - chr1_2:5358817-5358836 Msa0051260:intron 45.0%
ACAGACGCAACAGCATAAAC+AGG + chr1_2:5358852-5358871 None:intergenic 45.0%
GTCTTCCTCTCTTCTTACTC+GGG + chr1_2:5358875-5358894 None:intergenic 45.0%
GGTCTTCCTCTCTTCTTACT+CGG + chr1_2:5358876-5358895 None:intergenic 45.0%
TGAGAATTAGACGTTCGTGG+CGG + chr1_2:5358897-5358916 None:intergenic 45.0%
TCCTGAGAATTAGACGTTCG+TGG + chr1_2:5358900-5358919 None:intergenic 45.0%
TAAGACTATCTGCGTATCCG+TGG - chr1_2:5359071-5359090 Msa0051260:intron 45.0%
! TGGCCCCTTTGAAAATGTTC+CGG + chr1_2:5359218-5359237 None:intergenic 45.0%
!! GATTTGTTATGTGAACCGCC+TGG - chr1_2:5359462-5359481 Msa0051260:CDS 45.0%
! CACTTATCAAAGGTGTGTCC+AGG - chr1_2:5359612-5359631 Msa0051260:CDS 45.0%
TGTGACAGGCCTTCTATTTG+AGG + chr1_2:5359892-5359911 None:intergenic 45.0%
AAAAACTCTTCAGGTGGCTC+AGG - chr1_2:5359926-5359945 Msa0051260:intron 45.0%
AGTTACAAGCAAGCTCTCCT+CGG + chr1_2:5359961-5359980 None:intergenic 45.0%
CGTAACAATGGAGGACTTAC+TGG - chr1_2:5360293-5360312 Msa0051260:intron 45.0%
AACAATGGAGGACTTACTGG+TGG - chr1_2:5360296-5360315 Msa0051260:intron 45.0%
GTGTGTTTGTTCAAACCAGC+TGG - chr1_2:5360362-5360381 Msa0051260:intron 45.0%
ATGTCATGCAAATGACCAGC+TGG + chr1_2:5360380-5360399 None:intergenic 45.0%
GGAGATTACTCCTCTTACTG+CGG - chr1_2:5360436-5360455 Msa0051260:intron 45.0%
TGCATTCTCCAGGAAAGAAG+AGG - chr1_2:5360459-5360478 Msa0051260:intron 45.0%
GCATTCTCCAGGAAAGAAGA+GGG - chr1_2:5360460-5360479 Msa0051260:intron 45.0%
CATTCTCCAGGAAAGAAGAG+GGG - chr1_2:5360461-5360480 Msa0051260:intron 45.0%
GGAGTTAAGAGAACACTGAC+CGG - chr1_2:5360509-5360528 Msa0051260:intron 45.0%
AATGGCCTCCAGTTCTGTTT+GGG + chr1_2:5360540-5360559 None:intergenic 45.0%
GTCTGAGGAAGTTACGTTGT+TGG - chr1_2:5360579-5360598 Msa0051260:CDS 45.0%
!!! TTTTTATTAAAATTAATACA+TGG - chr1_2:5359767-5359786 Msa0051260:intron 5.0%
! TGGTGGGTGTAGCAGATCTT+GGG - chr1_2:5357393-5357412 Msa0051260:three_prime_UTR 50.0%
ACGAAGACCCACACAAACCA+CGG + chr1_2:5358137-5358156 None:intergenic 50.0%
! TGGTTTGTGTGGGTCTTCGT+AGG - chr1_2:5358137-5358156 Msa0051260:CDS 50.0%
! TCACTCCACCAGGACCTTTT+AGG + chr1_2:5358320-5358339 None:intergenic 50.0%
TGGCGAGAGTTTCTGTGAGA+AGG - chr1_2:5358488-5358507 Msa0051260:intron 50.0%
CGAGAGTTTCTGTGAGAAGG+CGG - chr1_2:5358491-5358510 Msa0051260:intron 50.0%
ACCACCTTGTTCAGTTTGGG+CGG + chr1_2:5358556-5358575 None:intergenic 50.0%
!! AGGTGGTGGATGTTCTAGCA+AGG - chr1_2:5358569-5358588 Msa0051260:intron 50.0%
!! GGTGGTGGATGTTCTAGCAA+GGG - chr1_2:5358570-5358589 Msa0051260:intron 50.0%
GTGGATGTTCTAGCAAGGGA+AGG - chr1_2:5358574-5358593 Msa0051260:intron 50.0%
! GTTTGGGACGGAACAGTTGT+TGG + chr1_2:5358807-5358826 None:intergenic 50.0%
ACTGTTCCGTCCCAAACAAC+TGG - chr1_2:5358810-5358829 Msa0051260:intron 50.0%
CAACTGGTAAACGGACAAGG+AGG - chr1_2:5358826-5358845 Msa0051260:intron 50.0%
TCTGTCCCGAGTAAGAAGAG+AGG - chr1_2:5358867-5358886 Msa0051260:intron 50.0%
GCCACGAACGTCTAATTCTC+AGG - chr1_2:5358896-5358915 Msa0051260:intron 50.0%
CAAATCAATGTCCTGCCAGG+CGG + chr1_2:5359480-5359499 None:intergenic 50.0%
GAATGAAGTCACGCGTGTCA+GGG + chr1_2:5359644-5359663 None:intergenic 50.0%
AGAATGAAGTCACGCGTGTC+AGG + chr1_2:5359645-5359664 None:intergenic 50.0%
AGACACCAGACATGTGACAC+TGG + chr1_2:5359692-5359711 None:intergenic 50.0%
CTTGAGACGATGGAGCAAGA+TGG + chr1_2:5360214-5360233 None:intergenic 50.0%
ATGGAGGACTTACTGGTGGT+TGG - chr1_2:5360300-5360319 Msa0051260:intron 50.0%
AAGAGGGGCTTGAGTTCTAC+AGG - chr1_2:5360476-5360495 Msa0051260:intron 50.0%
CAATGGCCTCCAGTTCTGTT+TGG + chr1_2:5360541-5360560 None:intergenic 50.0%
ACAGAACTGGAGGCCATTGA+AGG - chr1_2:5360542-5360561 Msa0051260:intron 50.0%
GTGCGTAATTGTGTCGTCTG+AGG - chr1_2:5360564-5360583 Msa0051260:CDS 50.0%
!! GTGGTGGGTGTAGCAGATCT+TGG - chr1_2:5357392-5357411 Msa0051260:three_prime_UTR 55.0%
GTGGTCCTAAAAGGTCCTGG+TGG - chr1_2:5358312-5358331 Msa0051260:intron 55.0%
AAGGTCCTGGTGGAGTGACA+TGG - chr1_2:5358322-5358341 Msa0051260:intron 55.0%
GCCCAAACTGAACAAGGTGG+TGG - chr1_2:5358555-5358574 Msa0051260:intron 55.0%
TGTTATGTGAACCGCCTGGC+AGG - chr1_2:5359466-5359485 Msa0051260:CDS 55.0%
! TGCGTCTTTGGAGAGCCCTT+TGG + chr1_2:5359858-5359877 None:intergenic 55.0%
AAAGGGCTCTCCAAAGACGC+AGG - chr1_2:5359857-5359876 Msa0051260:intron 55.0%
GGAGAATGCACCGCAGTAAG+AGG + chr1_2:5360449-5360468 None:intergenic 55.0%
CTTACTGCGGTGCATTCTCC+AGG - chr1_2:5360449-5360468 Msa0051260:intron 55.0%
CTCAAGCCCCTCTTCTTTCC+TGG + chr1_2:5360470-5360489 None:intergenic 55.0%
CAGTTCTGTTTGGGCAGCAC+CGG + chr1_2:5360531-5360550 None:intergenic 55.0%
TGCTGCCCAAACAGAACTGG+AGG - chr1_2:5360532-5360551 Msa0051260:intron 55.0%
TTCAGTTTGGGCGGCAGCCT+CGG + chr1_2:5358547-5358566 None:intergenic 60.0%
GCTGCCGCCCAAACTGAACA+AGG - chr1_2:5358549-5358568 Msa0051260:intron 60.0%
GCCGCCCAAACTGAACAAGG+TGG - chr1_2:5358552-5358571 Msa0051260:intron 60.0%
GAAGTCACGCGTGTCAGGGT+CGG + chr1_2:5359640-5359659 None:intergenic 60.0%
! AGAGCCCTTTGGAGACGCTG+GGG + chr1_2:5359847-5359866 None:intergenic 60.0%
! GAGAGCCCTTTGGAGACGCT+GGG + chr1_2:5359848-5359867 None:intergenic 60.0%
!! CGGTGCTGCCCAAACAGAAC+TGG - chr1_2:5360529-5360548 Msa0051260:intron 60.0%
TCGGAAATGTGGGCACGCCG+AGG - chr1_2:5358527-5358546 Msa0051260:intron 65.0%
ACCTGCCCCAGCGTCTCCAA+AGG - chr1_2:5359839-5359858 Msa0051260:intron 65.0%
CCTGCCCCAGCGTCTCCAAA+GGG - chr1_2:5359840-5359859 Msa0051260:intron 65.0%
! GGAGAGCCCTTTGGAGACGC+TGG + chr1_2:5359849-5359868 None:intergenic 65.0%
GGCTCAGGCAGCATGTACCG+AGG - chr1_2:5359941-5359960 Msa0051260:intron 65.0%
! CCCTTTGGAGACGCTGGGGC+AGG + chr1_2:5359843-5359862 None:intergenic 70.0%
CGCGTGTCAGGGTCGGACCC+TGG + chr1_2:5359633-5359652 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 5357147 5360897 5357147 ID=Msa0051260;Name=Msa0051260
chr1_2 mRNA 5357147 5360897 5357147 ID=Msa0051260-mRNA-1;Parent=Msa0051260;Name=Msa0051260-mRNA-1;_AED=0.11;_eAED=0.11;_QI=229|1|1|1|1|1|4|326|457
chr1_2 exon 5357147 5357859 5357147 ID=Msa0051260-mRNA-1:exon:1552;Parent=Msa0051260-mRNA-1
chr1_2 exon 5358028 5358212 5358028 ID=Msa0051260-mRNA-1:exon:1551;Parent=Msa0051260-mRNA-1
chr1_2 exon 5359102 5359783 5359102 ID=Msa0051260-mRNA-1:exon:1550;Parent=Msa0051260-mRNA-1
chr1_2 exon 5360549 5360897 5360549 ID=Msa0051260-mRNA-1:exon:1549;Parent=Msa0051260-mRNA-1
chr1_2 five_prime_UTR 5360669 5360897 5360669 ID=Msa0051260-mRNA-1:five_prime_utr;Parent=Msa0051260-mRNA-1
chr1_2 CDS 5360549 5360668 5360549 ID=Msa0051260-mRNA-1:cds;Parent=Msa0051260-mRNA-1
chr1_2 CDS 5359102 5359783 5359102 ID=Msa0051260-mRNA-1:cds;Parent=Msa0051260-mRNA-1
chr1_2 CDS 5358028 5358212 5358028 ID=Msa0051260-mRNA-1:cds;Parent=Msa0051260-mRNA-1
chr1_2 CDS 5357473 5357859 5357473 ID=Msa0051260-mRNA-1:cds;Parent=Msa0051260-mRNA-1
chr1_2 three_prime_UTR 5357147 5357472 5357147 ID=Msa0051260-mRNA-1:three_prime_utr;Parent=Msa0051260-mRNA-1
Gene Sequence

>Msa0051260

ATGGGATTACAAAACGGTGGTGGGTGTAGCAGATCTTGGGAAGAAGACATTTATTGGACCCATTTTCAATTCATTCATTTCACTCAATTTCTTCGCTCCAATGATTTTGCTCAACAATTGGCACTTCCCAAAACATTTTCAAACAATGTCAAAAAGAAGCTGCCTGAAAATGTGGTCCTAAAAGGTCCTGGTGGAGTGACATGGAATATAGGGCTGACAAGTAGAGACGGCACATTTTACTTCACGCAAGGGTGGGAACAATTTGTTAAAGACCACTCTTTGAAAGAGAACGACTTCCTGTTCTTTAAGTACAACGGTGAATCGTTGTTTGAGGTTTTAATATTTGATGGCGAGAGTTTCTGTGAGAAGGCGGCAGCTTATTTTGTTCGGAAATGTGGGCACGCCGAGGCTGCCGCCCAAACTGAACAAGGTGGTGGATGTTCTAGCAAGGGAAGGGACACAAACAATTCTGTGGATGAAGTCAATACTCCTTCTAATGGTGTTGATGAAGGTGTTTCACATGAAAAATCTTTGCATCTTAACAGTATCCGAGTGCCATTTGCTGTACCTTCTGAAACTACTAATGGAAAGACTTCTAATGCAGCTGTTGAATCTGCCACCCCTGAGCAATTAATGTCTGATGCAGCAGTCACTGAGACTGAGCCAACAACTGTTCCGTCCCAAACAACTGGTAAACGGACAAGGAGGCCTGTTTATGCTGTTGCGTCTGTCCCGAGTAAGAAGAGAGGAAGACCGCCACGAACGTCTAATTCTCAGGAGAAAGCTCTTAATTGGGTGACTGATGCTGAACCTGCCCCAGCGTCTCCAAAGGGCTCTCCAAAGACGCAGGAACTATATACCTCAAATAGAAGGCCTGTCACAAAAGATGAGATTGAAAAAACTCTTCAGGTGGCTCAGGCAGCATGTACCGAGGAGAGCTTGCTTGTAACTATGCGACCTTCACATGTATACAAGAGATTCTTCGTGTCATTCCCTAATAAGTGGATACTAAACCATCTTGCTCCATCGTCTCAAGATGTGATATTACGCATGGGTAAGAATGAATGGCTTGGGAAATACTGCTATCATAATATTCGTAACAATGGAGGACTTACTGGTGGTTGGAAGTATTTTGCGCTCGACAACAACCTTGAAGAGTTTGACGTGTGTTTGTTCAAACCAGCTGGTCATTTGCATGACATATTGATCTTAGAAATGAGCATTTTTAGAGTTGTTGAGGAGATTACTCCTCTTACTGCGGTGCATTCTCCAGGAAAGAAGAGGGGCTTGAGTTCTACAGGAAAGAAGAGGGGAGTTAAGAGAACACTGACCGGTGCTGCCCAAACAGAACTGGAGGCCATTGAAGGTGCGTAA
Protein sequence

>Msa0051260

MGLQNGGGCSRSWEEDIYWTHFQFIHFTQFLRSNDFAQQLALPKTFSNNVKKKLPENVVLKGPGGVTWNIGLTSRDGTFYFTQGWEQFVKDHSLKENDFLFFKYNGESLFEVLIFDGESFCEKAAAYFVRKCGHAEAAAQTEQGGGCSSKGRDTNNSVDEVNTPSNGVDEGVSHEKSLHLNSIRVPFAVPSETTNGKTSNAAVESATPEQLMSDAAVTETEPTTVPSQTTGKRTRRPVYAVASVPSKKRGRPPRTSNSQEKALNWVTDAEPAPASPKGSPKTQELYTSNRRPVTKDEIEKTLQVAQAACTEESLLVTMRPSHVYKRFFVSFPNKWILNHLAPSSQDVILRMGKNEWLGKYCYHNIRNNGGLTGGWKYFALDNNLEEFDVCLFKPAGHLHDILILEMSIFRVVEEITPLTAVHSPGKKRGLSSTGKKRGVKRTLTGAAQTELEAIEGA*