AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0051160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0051160 MtrunA17_Chr1g0154251 98.246 456 8 0 1 456 1 456 0.0 938
Msa0051160 MtrunA17_Chr1g0154211 49.357 389 160 10 10 393 6 362 6.87e-111 333
Msa0051160 MtrunA17_Chr1g0154241 59.643 280 99 5 7 285 2 268 1.09e-108 322
Msa0051160 MtrunA17_Chr1g0154101 43.779 434 185 12 11 396 168 590 3.02e-96 308
Msa0051160 MtrunA17_Chr1g0154101 69.942 173 44 3 6 177 4 169 3.75e-73 246
Msa0051160 MtrunA17_Chr1g0154111 44.961 387 160 9 10 393 9 345 1.31e-94 297
Msa0051160 MtrunA17_Chr1g0154111 49.561 228 78 6 41 264 368 562 4.08e-55 193
Msa0051160 MtrunA17_Chr1g0154191 43.921 403 147 13 7 393 2 341 8.15e-89 275
Msa0051160 MtrunA17_Chr1g0154171 40.931 408 172 11 10 414 6 347 1.03e-81 256
Msa0051160 MtrunA17_Chr1g0154131 42.228 386 122 12 11 393 168 455 4.52e-78 251
Msa0051160 MtrunA17_Chr1g0154131 67.045 176 49 2 2 177 3 169 9.13e-71 231
Msa0051160 MtrunA17_Chr1g0154161 78.873 142 24 3 4 144 8 144 3.08e-72 231
Msa0051160 MtrunA17_Chr1g0154071 39.323 384 171 10 15 393 145 471 2.38e-69 228
Msa0051160 MtrunA17_Chr1g0154071 72.059 136 38 0 2 137 3 138 7.88e-63 211
Msa0051160 MtrunA17_Chr1g0154151 36.986 365 135 9 41 393 19 300 5.63e-60 199
Msa0051160 MtrunA17_Chr1g0154041 37.255 102 63 1 26 127 15 115 6.44e-15 77.0
Msa0051160 MtrunA17_Chr3g0131891 35.484 93 59 1 25 116 17 109 1.49e-14 74.7
Msa0051160 MtrunA17_Chr7g0233571 36.957 92 57 1 26 116 9 100 1.23e-13 70.1
Msa0051160 MtrunA17_Chr7g0233561 35.870 92 58 1 25 115 16 107 1.55e-13 71.6
Msa0051160 MtrunA17_Chr7g0233531 40.000 75 45 0 42 116 2 76 2.57e-12 67.4
Msa0051160 MtrunA17_Chr7g0233541 36.709 79 50 0 42 120 2 80 1.88e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0051160 AT4G33280.3 35.208 409 232 9 4 410 3 380 5.29e-69 225
Msa0051160 AT4G33280.2 48.780 164 81 3 4 166 3 164 2.67e-47 165
Msa0051160 AT4G33280.1 52.817 142 64 3 4 144 3 142 2.83e-45 161
Msa0051160 AT4G33280.1 27.727 220 130 5 216 410 104 319 4.72e-19 88.6
Msa0051160 AT3G18990.1 24.543 383 225 13 38 415 18 341 2.55e-23 100
Msa0051160 AT3G18990.2 24.538 379 222 13 38 411 18 337 6.51e-23 100
Msa0051160 AT4G34400.2 31.293 147 94 2 27 173 17 156 2.08e-18 87.4
Msa0051160 AT4G34400.1 31.293 147 94 2 27 173 17 156 2.08e-18 87.4
Msa0051160 AT3G06160.5 28.017 232 124 8 27 255 11 202 3.00e-16 79.7
Msa0051160 AT3G06160.4 28.017 232 124 8 27 255 11 202 3.00e-16 79.7
Msa0051160 AT3G06160.3 28.017 232 124 8 27 255 11 202 3.00e-16 79.7
Msa0051160 AT3G06160.1 27.155 232 126 7 27 255 26 217 3.21e-16 80.1
Msa0051160 AT3G06160.2 27.155 232 126 7 27 255 70 261 4.23e-16 80.1
Msa0051160 AT3G06220.1 33.000 100 65 2 27 126 11 108 3.27e-14 71.2
Msa0051160 AT1G49480.3 28.824 170 111 5 247 415 66 226 1.05e-12 67.8
Msa0051160 AT1G49480.1 28.824 170 111 5 247 415 66 226 1.05e-12 67.8
Msa0051160 AT1G49480.2 28.824 170 111 5 247 415 66 226 1.05e-12 67.8
Msa0051160 AT3G53310.1 37.500 80 50 0 37 116 21 100 3.17e-12 67.4
Msa0051160 AT5G57720.1 35.955 89 56 1 27 114 13 101 5.05e-11 63.9

Find 137 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTTTAGTATCCACTTATT+AGG 0.155011 1_2:+5248334 None:intergenic
CTCAGGAGAAAGCTCTTAAT+TGG 0.185662 1_2:-5249612 Msa0051160:CDS
CAATGGCCTCCAGTTCTGTT+TGG 0.239462 1_2:+5247987 None:intergenic
CTTGGGAAGAAGACATTTAT+TGG 0.243378 1_2:-5251116 Msa0051160:CDS
TGAAATGAATGAATTGAAAA+TGG 0.249343 1_2:+5251091 None:intergenic
GACATTGTTTGAAAATGTTT+TGG 0.262691 1_2:+5250257 None:intergenic
TGAAATGGGAAAAGAGTTAA+AGG 0.276728 1_2:+5251205 None:intergenic
AGCAGAATCAGATATGAATT+AGG 0.282702 1_2:+5251177 None:intergenic
GTATATAGTTCCTGCGTCTT+TGG 0.290182 1_2:+5248658 None:intergenic
ATGAATTAGGGTTTATGAAA+TGG 0.297100 1_2:+5251190 None:intergenic
CTCAAGCCCCTCTTCTTTCC+TGG 0.311310 1_2:+5248058 None:intergenic
ATCCACCACCTTGTTCAGTT+TGG 0.318706 1_2:+5249968 None:intergenic
TGTGACAGGCCTTCTATTTG+AGG 0.325138 1_2:+5248636 None:intergenic
CGTAACAATGGAGGACTTAC+TGG 0.329858 1_2:-5248232 Msa0051160:CDS
AATGGCCTCCAGTTCTGTTT+GGG 0.333107 1_2:+5247988 None:intergenic
GGTTTAGTATCCACTTATTA+GGG 0.333478 1_2:+5248335 None:intergenic
TCCACCACCTTGTTCAGTTT+GGG 0.342784 1_2:+5249969 None:intergenic
GCAGAATCAGATATGAATTA+GGG 0.355464 1_2:+5251178 None:intergenic
TTGTCCGTTTACCAGTTGTT+TGG 0.357600 1_2:+5249704 None:intergenic
TGAATTAGGGTTTATGAAAT+GGG 0.358225 1_2:+5251191 None:intergenic
CCTGAAAATGTGGTCCTAAA+AGG 0.366161 1_2:-5250222 Msa0051160:CDS
TTCAGTTTGGGCGGCAGCCT+CGG 0.376086 1_2:+5249981 None:intergenic
TGTCCGTTTACCAGTTGTTT+GGG 0.377248 1_2:+5249705 None:intergenic
ATATCTGATTCTGCTTCAAA+TGG 0.377259 1_2:-5251169 Msa0051160:exon
GGTGGAGTGACATGGAATAT+AGG 0.380908 1_2:-5250195 Msa0051160:CDS
TGCGTCTTTGGAGAGCCCTT+TGG 0.384532 1_2:+5248670 None:intergenic
GTACCTTCTGAAACTACTAA+TGG 0.385556 1_2:-5249820 Msa0051160:CDS
CACCGTTGTACTTAAAGAAC+AGG 0.391008 1_2:+5250088 None:intergenic
GGAGAGCCCTTTGGAGACGC+TGG 0.392912 1_2:+5248679 None:intergenic
TATATGTTAACAGTTGTGTT+AGG 0.411885 1_2:-5247910 Msa0051160:three_prime_UTR
CGGTGCTGCCCAAACAGAAC+TGG 0.423283 1_2:-5247996 Msa0051160:CDS
GTGGTGGGTGTAGCAGATCT+TGG 0.425709 1_2:-5251134 Msa0051160:CDS
CCCTTTGGAGACGCTGGGGC+AGG 0.428621 1_2:+5248685 None:intergenic
GGTCTTCCTCTCTTCTTACT+CGG 0.429301 1_2:+5249652 None:intergenic
GAAGTCAATACTCCTTCTAA+TGG 0.429462 1_2:-5249907 Msa0051160:CDS
AACACACGTCAAACTCTTCA+AGG 0.430454 1_2:+5248179 None:intergenic
ACACAATTACGCACCTTCAA+TGG 0.435249 1_2:+5247970 None:intergenic
AACTATATACCTCAAATAGA+AGG 0.436916 1_2:-5248645 Msa0051160:CDS
GCATCAGACATTAATTGCTC+AGG 0.442937 1_2:+5249763 None:intergenic
GTGGAGTGACATGGAATATA+GGG 0.454700 1_2:-5250194 Msa0051160:CDS
CAATTGTTGAGCAAAATCAT+TGG 0.454715 1_2:+5251053 None:intergenic
CAGTTCTGTTTGGGCAGCAC+CGG 0.454969 1_2:+5247997 None:intergenic
GAGAGCCCTTTGGAGACGCT+GGG 0.458201 1_2:+5248680 None:intergenic
CGTCCCAAACAACTGGTAAA+CGG 0.458610 1_2:-5249708 Msa0051160:CDS
ACTGTTCCGTCCCAAACAAC+TGG 0.462388 1_2:-5249715 Msa0051160:CDS
CCTTCATCAACACCATTAGA+AGG 0.467182 1_2:+5249895 None:intergenic
AAGAGGGGCTTGAGTTCTAC+AGG 0.469641 1_2:-5248049 Msa0051160:CDS
TCCTGAGAATTAGACGTTCG+TGG 0.470182 1_2:+5249628 None:intergenic
GTCTGAGGAAGTTACGTTGT+TGG 0.479297 1_2:-5247946 Msa0051160:three_prime_UTR
GCCACGAACGTCTAATTCTC+AGG 0.479478 1_2:-5249629 Msa0051160:CDS
TCAGGAGAAAGCTCTTAATT+GGG 0.480968 1_2:-5249611 Msa0051160:CDS
GGAGAATGCACCGCAGTAAG+AGG 0.480989 1_2:+5248079 None:intergenic
ACAGACGCAACAGCATAAAC+AGG 0.486042 1_2:+5249676 None:intergenic
TCCATTGCTTTCTTGAAACA+TGG 0.489740 1_2:-5247669 Msa0051160:three_prime_UTR
ACAGAACTGGAGGCCATTGA+AGG 0.495326 1_2:-5247983 Msa0051160:CDS
TACGCATGGGTAAGAATGAA+TGG 0.495657 1_2:-5248282 Msa0051160:CDS
CTTACTGCGGTGCATTCTCC+AGG 0.496763 1_2:-5248076 Msa0051160:CDS
TGGGTAAGAATGAATGGCTT+GGG 0.497908 1_2:-5248276 Msa0051160:CDS
ACTTGTCTAATCTTCTACCT+AGG 0.504369 1_2:-5247824 Msa0051160:three_prime_UTR
ATGGGTAAGAATGAATGGCT+TGG 0.510570 1_2:-5248277 Msa0051160:CDS
TATCTGATTCTGCTTCAAAT+GGG 0.511947 1_2:-5251168 Msa0051160:exon
GTTTGGGACGGAACAGTTGT+TGG 0.513367 1_2:+5249721 None:intergenic
ACCTGCCCCAGCGTCTCCAA+AGG 0.514129 1_2:-5248686 Msa0051160:CDS
GTCTTCCTCTCTTCTTACTC+GGG 0.516995 1_2:+5249653 None:intergenic
GAAATGAATGAATTGAAAAT+GGG 0.517659 1_2:+5251092 None:intergenic
CCTTCTAATGGTGTTGATGA+AGG 0.519085 1_2:-5249895 Msa0051160:CDS
ACTAGTCATTCCCTAATAAG+TGG 0.519210 1_2:-5248345 Msa0051160:intron
GTTTCAGAAGGTACAGCAAA+TGG 0.520424 1_2:+5249829 None:intergenic
CTTCAAATGGGATTACAAAA+CGG 0.520715 1_2:-5251156 Msa0051160:exon
TGGTGGGTGTAGCAGATCTT+GGG 0.526446 1_2:-5251133 Msa0051160:CDS
CAACGGTGAATCGTTGTTTG+AGG 0.529531 1_2:-5250073 Msa0051160:CDS
AAAGCTCTTAATTGGGTGAC+TGG 0.530787 1_2:-5249604 Msa0051160:intron
ATATTCCATGTCACTCCACC+AGG 0.530935 1_2:+5250198 None:intergenic
ATGGGATTACAAAACGGTGG+TGG 0.534211 1_2:-5251150 Msa0051160:CDS
CCTGCCCCAGCGTCTCCAAA+GGG 0.534279 1_2:-5248685 Msa0051160:CDS
ATGTCATGCAAATGACCAGC+TGG 0.547589 1_2:+5248148 None:intergenic
ATGGAGGACTTACTGGTGGT+TGG 0.548078 1_2:-5248225 Msa0051160:CDS
TCAAGATGTGATATTACGCA+TGG 0.548312 1_2:-5248296 Msa0051160:CDS
CATCAGACATTAATTGCTCA+GGG 0.548758 1_2:+5249764 None:intergenic
CGTTTACCAGTTGTTTGGGA+CGG 0.549463 1_2:+5249709 None:intergenic
TGGCGAGAGTTTCTGTGAGA+AGG 0.555646 1_2:-5250037 Msa0051160:CDS
AAGGTCCTGGTGGAGTGACA+TGG 0.566287 1_2:-5250203 Msa0051160:CDS
TGTATACAAGAGATTCTTCG+TGG 0.566958 1_2:-5248530 Msa0051160:intron
AGTCGTTCTCTTTCAAAGAG+TGG 0.570224 1_2:+5250112 None:intergenic
AATCTCTTGTATACATGTGA+AGG 0.571018 1_2:+5248538 None:intergenic
CTTGAGACGATGGAGCAAGA+TGG 0.572879 1_2:+5248314 None:intergenic
TTTCCATTAGTAGTTTCAGA+AGG 0.573429 1_2:+5249817 None:intergenic
GAGTTCTACAGGAAAGAAGA+GGG 0.574907 1_2:-5248038 Msa0051160:CDS
AAAGAAGCTGCCTGAAAATG+TGG 0.583717 1_2:-5250232 Msa0051160:CDS
GTGTGTTTGTTCAAACCAGC+TGG 0.583771 1_2:-5248163 Msa0051160:CDS
GCTGCCGCCCAAACTGAACA+AGG 0.584723 1_2:-5249976 Msa0051160:CDS
GCATTCTCCAGGAAAGAAGA+GGG 0.592388 1_2:-5248065 Msa0051160:CDS
TTCCTGTTCTTTAAGTACAA+CGG 0.596255 1_2:-5250090 Msa0051160:CDS
AAACAACTGGTAAACGGACA+AGG 0.598332 1_2:-5249702 Msa0051160:CDS
TGCATTCTCCAGGAAAGAAG+AGG 0.603183 1_2:-5248066 Msa0051160:CDS
TGCTGCCCAAACAGAACTGG+AGG 0.604957 1_2:-5247993 Msa0051160:CDS
AGTTACAAGCAAGCTCTCCT+CGG 0.605075 1_2:+5248567 None:intergenic
GAAAGCAATGGACAAACACT+TGG 0.605736 1_2:+5247680 None:intergenic
AAGGTACAGCAAATGGCACT+CGG 0.606956 1_2:+5249836 None:intergenic
CATAATATTCGTAACAATGG+AGG 0.607755 1_2:-5248241 Msa0051160:CDS
AGGTGGTGGATGTTCTAGCA+AGG 0.607880 1_2:-5249956 Msa0051160:CDS
GCCCAAACTGAACAAGGTGG+TGG 0.609494 1_2:-5249970 Msa0051160:CDS
AATGTGGTCCTAAAAGGTCC+TGG 0.611828 1_2:-5250216 Msa0051160:CDS
TTACACATAGTTAATTACCT+AGG 0.613624 1_2:+5247807 None:intergenic
GTGGATGTTCTAGCAAGGGA+AGG 0.613993 1_2:-5249951 Msa0051160:CDS
TGAGTTCTACAGGAAAGAAG+AGG 0.614505 1_2:-5248039 Msa0051160:CDS
TGGGATTACAAAACGGTGGT+GGG 0.615464 1_2:-5251149 Msa0051160:CDS
TATCATAATATTCGTAACAA+TGG 0.617731 1_2:-5248244 Msa0051160:CDS
ACCACCTTGTTCAGTTTGGG+CGG 0.621987 1_2:+5249972 None:intergenic
GGTGGTGGATGTTCTAGCAA+GGG 0.623883 1_2:-5249955 Msa0051160:CDS
GTGCGTAATTGTGTCGTCTG+AGG 0.624827 1_2:-5247961 Msa0051160:exon
AAAGGGCTCTCCAAAGACGC+AGG 0.627367 1_2:-5248668 Msa0051160:CDS
CAAGATGTGATATTACGCAT+GGG 0.629761 1_2:-5248295 Msa0051160:CDS
AGACATTAATTGCTCAGGGG+TGG 0.633255 1_2:+5249768 None:intergenic
AATATCACATCTTGAGACGA+TGG 0.639490 1_2:+5248304 None:intergenic
GGAGATTACTCCTCTTACTG+CGG 0.639926 1_2:-5248089 Msa0051160:CDS
AGAGCCCTTTGGAGACGCTG+GGG 0.640012 1_2:+5248681 None:intergenic
TCGGAAATGTGGGCACGCCG+AGG 0.642864 1_2:-5249998 Msa0051160:CDS
CGAGAGTTTCTGTGAGAAGG+CGG 0.644557 1_2:-5250034 Msa0051160:CDS
GGAGTTAAGAGAACACTGAC+CGG 0.646401 1_2:-5248016 Msa0051160:CDS
TGGATGTTCTAGCAAGGGAA+GGG 0.650202 1_2:-5249950 Msa0051160:CDS
AAGGGACACAAACAATTCTG+TGG 0.651587 1_2:-5249932 Msa0051160:CDS
GCCCGTGAATGAGAATATGA+AGG 0.654121 1_2:+5247640 None:intergenic
GGCTCAGGCAGCATGTACCG+AGG 0.663486 1_2:-5248584 Msa0051160:CDS
GTGGTCCTAAAAGGTCCTGG+TGG 0.664078 1_2:-5250213 Msa0051160:CDS
TCCATGTTTCAAGAAAGCAA+TGG 0.674558 1_2:+5247668 None:intergenic
ATAGGGCTGACAAGTAGAGA+CGG 0.678435 1_2:-5250177 Msa0051160:CDS
TCTGTCCCGAGTAAGAAGAG+AGG 0.684134 1_2:-5249658 Msa0051160:CDS
AACAATGGAGGACTTACTGG+TGG 0.686037 1_2:-5248229 Msa0051160:CDS
TGAGAATTAGACGTTCGTGG+CGG 0.689016 1_2:+5249631 None:intergenic
AGTTCTACAGGAAAGAAGAG+GGG 0.697073 1_2:-5248037 Msa0051160:CDS
CAAATGGGATTACAAAACGG+TGG 0.705155 1_2:-5251153 Msa0051160:CDS
CATTCTCCAGGAAAGAAGAG+GGG 0.708428 1_2:-5248064 Msa0051160:CDS
CGTGAATGAGAATATGAAGG+TGG 0.720594 1_2:+5247643 None:intergenic
GCCGCCCAAACTGAACAAGG+TGG 0.731431 1_2:-5249973 Msa0051160:CDS
ATCAGACATTAATTGCTCAG+GGG 0.741591 1_2:+5249765 None:intergenic
CAACTGGTAAACGGACAAGG+AGG 0.752519 1_2:-5249699 Msa0051160:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTAATAAAAATAATCATAAT+TGG - chr1_2:5249889-5249908 Msa0051160:CDS 10.0%
!! TCAGAAAAAAAAAAATTATG+TGG + chr1_2:5248179-5248198 None:intergenic 15.0%
!!! TTATTTTGATTTTGAATAAC+CGG - chr1_2:5249700-5249719 Msa0051160:CDS 15.0%
!! AAGTTAAAAAAGTAAAGTAA+GGG + chr1_2:5250538-5250557 None:intergenic 15.0%
!! ATAAAAAAAAAAACACAATG+AGG + chr1_2:5250595-5250614 None:intergenic 15.0%
!! TATAATAAAGTTAAAAATGC+AGG + chr1_2:5250628-5250647 None:intergenic 15.0%
!! GAAATGAATGAATTGAAAAT+GGG + chr1_2:5247940-5247959 None:intergenic 20.0%
!! TGAAATGAATGAATTGAAAA+TGG + chr1_2:5247941-5247960 None:intergenic 20.0%
!!! GTCTTTTTAAATAATGTTGT+AGG - chr1_2:5248340-5248359 Msa0051160:CDS 20.0%
!! CATATACTTGATATTATGAA+TGG - chr1_2:5248553-5248572 Msa0051160:CDS 20.0%
!!! ACATTGTTTGAAAATGTTTT+GGG + chr1_2:5248774-5248793 None:intergenic 20.0%
!!! TTTGAGGTTTTAATATTTGA+TGG - chr1_2:5248972-5248991 Msa0051160:intron 20.0%
!! AATCTCTCATTACTAAAATT+TGG + chr1_2:5249918-5249937 None:intergenic 20.0%
!!! TTTTAGTAATGAGAGATTTT+TGG - chr1_2:5249920-5249939 Msa0051160:CDS 20.0%
!!! TTTAGTAATGAGAGATTTTT+GGG - chr1_2:5249921-5249940 Msa0051160:CDS 20.0%
!! CAAGTTAAAAAAGTAAAGTA+AGG + chr1_2:5250539-5250558 None:intergenic 20.0%
!! TATCATAATATTCGTAACAA+TGG - chr1_2:5250785-5250804 Msa0051160:intron 20.0%
!!! TCAGTTTTGCAAAATAATTA+GGG + chr1_2:5251305-5251324 None:intergenic 20.0%
!!! TTCAGTTTTGCAAAATAATT+AGG + chr1_2:5251306-5251325 None:intergenic 20.0%
! TGAATTAGGGTTTATGAAAT+GGG + chr1_2:5247841-5247860 None:intergenic 25.0%
! ATGAATTAGGGTTTATGAAA+TGG + chr1_2:5247842-5247861 None:intergenic 25.0%
!!! TGTCAAGTTTTTTTGATGAA+AGG - chr1_2:5248273-5248292 Msa0051160:CDS 25.0%
!! GAACTATGCATTTACATTTT+AGG - chr1_2:5248440-5248459 Msa0051160:intron 25.0%
!!! GTAGGTTATAATTGACTTTT+AGG - chr1_2:5248659-5248678 Msa0051160:CDS 25.0%
!!! GAAGTTTATATTTTGTTTGC+AGG - chr1_2:5248743-5248762 Msa0051160:intron 25.0%
!! GACATTGTTTGAAAATGTTT+TGG + chr1_2:5248775-5248794 None:intergenic 25.0%
! AAAGAAACATTTAACACTTG+TGG - chr1_2:5249476-5249495 Msa0051160:intron 25.0%
!!! GTGACATTTGTTGTTTATAA+TGG + chr1_2:5249602-5249621 None:intergenic 25.0%
! AGTTACATGAAATTGGAATT+TGG + chr1_2:5249742-5249761 None:intergenic 25.0%
! CCTATATAGTTACATGAAAT+TGG + chr1_2:5249749-5249768 None:intergenic 25.0%
! CCAATTTCATGTAACTATAT+AGG - chr1_2:5249746-5249765 Msa0051160:CDS 25.0%
!!! GATATTCCATCATTACTTTT+TGG - chr1_2:5249811-5249830 Msa0051160:CDS 25.0%
! AACTATATACCTCAAATAGA+AGG - chr1_2:5250384-5250403 Msa0051160:intron 25.0%
! TATATGTTAACAGTTGTGTT+AGG - chr1_2:5251119-5251138 Msa0051160:CDS 25.0%
!! ATATCGTTTTATGTCTGTTT+TGG - chr1_2:5251162-5251181 Msa0051160:exon 25.0%
! TTACACATAGTTAATTACCT+AGG + chr1_2:5251225-5251244 None:intergenic 25.0%
! GTACAAAGAAGCAATTTTTG+TGG + chr1_2:5247719-5247738 None:intergenic 30.0%
!!! TACTGCTTTTTTCTGATTCT+AGG - chr1_2:5247736-5247755 Msa0051160:three_prime_UTR 30.0%
!!! ACTGCTTTTTTCTGATTCTA+GGG - chr1_2:5247737-5247756 Msa0051160:three_prime_UTR 30.0%
TGAAATGGGAAAAGAGTTAA+AGG + chr1_2:5247827-5247846 None:intergenic 30.0%
GCAGAATCAGATATGAATTA+GGG + chr1_2:5247854-5247873 None:intergenic 30.0%
AGCAGAATCAGATATGAATT+AGG + chr1_2:5247855-5247874 None:intergenic 30.0%
ATATCTGATTCTGCTTCAAA+TGG - chr1_2:5247860-5247879 Msa0051160:three_prime_UTR 30.0%
TATCTGATTCTGCTTCAAAT+GGG - chr1_2:5247861-5247880 Msa0051160:three_prime_UTR 30.0%
CTTCAAATGGGATTACAAAA+CGG - chr1_2:5247873-5247892 Msa0051160:three_prime_UTR 30.0%
CAATTGTTGAGCAAAATCAT+TGG + chr1_2:5247979-5247998 None:intergenic 30.0%
! CAATGATTTTGCTCAACAAT+TGG - chr1_2:5247977-5247996 Msa0051160:CDS 30.0%
AAATTTCATCACTTTCAGAG+GGG + chr1_2:5248078-5248097 None:intergenic 30.0%
CAAATTTCATCACTTTCAGA+GGG + chr1_2:5248079-5248098 None:intergenic 30.0%
! CTCTGAAAGTGATGAAATTT+GGG - chr1_2:5248078-5248097 Msa0051160:CDS 30.0%
TTGCAAGAAAGTTTGATCTT+TGG - chr1_2:5248233-5248252 Msa0051160:CDS 30.0%
TGATTTATGTGGTTGATCTT+GGG - chr1_2:5248500-5248519 Msa0051160:intron 30.0%
!!! ATGAATGGCTGTTTTTGAAT+CGG - chr1_2:5248568-5248587 Msa0051160:CDS 30.0%
TAATATTGACATGTTGACAC+CGG + chr1_2:5248615-5248634 None:intergenic 30.0%
TTCCTGTTCTTTAAGTACAA+CGG - chr1_2:5248939-5248958 Msa0051160:intron 30.0%
!!! CTTATTTTGTTCGGAAATGT+GGG - chr1_2:5249021-5249040 Msa0051160:intron 30.0%
TTTCCATTAGTAGTTTCAGA+AGG + chr1_2:5249215-5249234 None:intergenic 30.0%
! TTTTTACTTGTGAATGACGA+CGG - chr1_2:5249453-5249472 Msa0051160:intron 30.0%
TTTAACACTTGTGGTAAAAG+CGG - chr1_2:5249485-5249504 Msa0051160:intron 30.0%
GTCTTAACTATTGCATTCAT+TGG + chr1_2:5249561-5249580 None:intergenic 30.0%
!! TTGTTGTTTATAATGGTCCA+CGG + chr1_2:5249595-5249614 None:intergenic 30.0%
! AATAACCGGAACATTTTCAA+AGG - chr1_2:5249714-5249733 Msa0051160:CDS 30.0%
! ATAACCGGAACATTTTCAAA+GGG - chr1_2:5249715-5249734 Msa0051160:CDS 30.0%
CATGTAACTATATAGGTGAT+AGG - chr1_2:5249753-5249772 Msa0051160:CDS 30.0%
CACTCATTCATTCAAACATT+CGG + chr1_2:5249791-5249810 None:intergenic 30.0%
! TGTGGTCTAGAATTAAATTG+AGG + chr1_2:5249840-5249859 None:intergenic 30.0%
CTCTCATTACTAAAATTTGG+TGG + chr1_2:5249915-5249934 None:intergenic 30.0%
TGAGATTGAAAAAACTCTTC+AGG - chr1_2:5250421-5250440 Msa0051160:intron 30.0%
AATCTCTTGTATACATGTGA+AGG + chr1_2:5250494-5250513 None:intergenic 30.0%
GGTTTAGTATCCACTTATTA+GGG + chr1_2:5250697-5250716 None:intergenic 30.0%
TGGTTTAGTATCCACTTATT+AGG + chr1_2:5250698-5250717 None:intergenic 30.0%
CATAATATTCGTAACAATGG+AGG - chr1_2:5250788-5250807 Msa0051160:intron 30.0%
! GTTTTGCAAAATAATTAGGG+TGG + chr1_2:5251302-5251321 None:intergenic 30.0%
CTTGGGAAGAAGACATTTAT+TGG - chr1_2:5247913-5247932 Msa0051160:three_prime_UTR 35.0%
CCAAATTTCATCACTTTCAG+AGG + chr1_2:5248080-5248099 None:intergenic 35.0%
! CCTCTGAAAGTGATGAAATT+TGG - chr1_2:5248077-5248096 Msa0051160:CDS 35.0%
TTTCATGCATGTGTCATGAT+AGG - chr1_2:5248467-5248486 Msa0051160:intron 35.0%
TTCATGCATGTGTCATGATA+GGG - chr1_2:5248468-5248487 Msa0051160:intron 35.0%
GGTCATGTTTGTGATTTATG+TGG - chr1_2:5248489-5248508 Msa0051160:intron 35.0%
GTGATTTATGTGGTTGATCT+TGG - chr1_2:5248499-5248518 Msa0051160:intron 35.0%
AGGCATTTAGTCTACTAAGA+TGG - chr1_2:5248679-5248698 Msa0051160:CDS 35.0%
!!! GCTTATTTTGTTCGGAAATG+TGG - chr1_2:5249020-5249039 Msa0051160:intron 35.0%
GAAGTCAATACTCCTTCTAA+TGG - chr1_2:5249122-5249141 Msa0051160:intron 35.0%
!! GTACCTTCTGAAACTACTAA+TGG - chr1_2:5249209-5249228 Msa0051160:intron 35.0%
ATCAGACATTAATTGCTCAG+GGG + chr1_2:5249267-5249286 None:intergenic 35.0%
CATCAGACATTAATTGCTCA+GGG + chr1_2:5249268-5249287 None:intergenic 35.0%
TCAGGAGAAAGCTCTTAATT+GGG - chr1_2:5249418-5249437 Msa0051160:intron 35.0%
CAGTAGACAGATATGTTTCT+TGG + chr1_2:5249624-5249643 None:intergenic 35.0%
! TAACCGGAACATTTTCAAAG+GGG - chr1_2:5249716-5249735 Msa0051160:CDS 35.0%
ATATAGGTGATAGGCAAAAG+TGG - chr1_2:5249762-5249781 Msa0051160:CDS 35.0%
TATAGGTGATAGGCAAAAGT+GGG - chr1_2:5249763-5249782 Msa0051160:CDS 35.0%
CGAATGTTTGAATGAATGAG+TGG - chr1_2:5249789-5249808 Msa0051160:CDS 35.0%
AGGACTCCAAAAAGTAATGA+TGG + chr1_2:5249820-5249839 None:intergenic 35.0%
CAAGTTTACTATGCTTCTTG+TGG + chr1_2:5249858-5249877 None:intergenic 35.0%
!!! AGATTTTTGGGTAGAAACAG+TGG - chr1_2:5249933-5249952 Msa0051160:CDS 35.0%
!! ACACTTAGCTGATGTTTTTG+TGG - chr1_2:5250057-5250076 Msa0051160:CDS 35.0%
! GCAGTTTTCTCACTTATCAA+AGG - chr1_2:5250106-5250125 Msa0051160:CDS 35.0%
! TCAATCTCATCTTTTGTGAC+AGG + chr1_2:5250410-5250429 None:intergenic 35.0%
GATTGAAAAAACTCTTCAGG+TGG - chr1_2:5250424-5250443 Msa0051160:intron 35.0%
TGTATACAAGAGATTCTTCG+TGG - chr1_2:5250499-5250518 Msa0051160:intron 35.0%
ACTAGTCATTCCCTAATAAG+TGG - chr1_2:5250684-5250703 Msa0051160:intron 35.0%
AATATCACATCTTGAGACGA+TGG + chr1_2:5250728-5250747 None:intergenic 35.0%
TCAAGATGTGATATTACGCA+TGG - chr1_2:5250733-5250752 Msa0051160:intron 35.0%
CAAGATGTGATATTACGCAT+GGG - chr1_2:5250734-5250753 Msa0051160:intron 35.0%
!!! GAGCATTTTTAGAGTTGTTG+AGG - chr1_2:5250919-5250938 Msa0051160:intron 35.0%
!! GTCTGTTTTGGATGTTATGA+TGG - chr1_2:5251174-5251193 Msa0051160:five_prime_UTR 35.0%
ACTTGTCTAATCTTCTACCT+AGG - chr1_2:5251205-5251224 Msa0051160:five_prime_UTR 35.0%
!!! GCAGTAGCTAGACTTTTTTA+AGG - chr1_2:5251255-5251274 Msa0051160:five_prime_UTR 35.0%
TCCATTGCTTTCTTGAAACA+TGG - chr1_2:5251360-5251379 Msa0051160:five_prime_UTR 35.0%
TCCATGTTTCAAGAAAGCAA+TGG + chr1_2:5251364-5251383 None:intergenic 35.0%
CAAATGGGATTACAAAACGG+TGG - chr1_2:5247876-5247895 Msa0051160:three_prime_UTR 40.0%
AGTTATGATCTTCGTAACGC+CGG - chr1_2:5248593-5248612 Msa0051160:CDS 40.0%
ACATGTCAATATTAGTGCCG+TGG - chr1_2:5248621-5248640 Msa0051160:CDS 40.0%
AAAGAAGCTGCCTGAAAATG+TGG - chr1_2:5248797-5248816 Msa0051160:intron 40.0%
!!! CCTTTTAGGACCACATTTTC+AGG + chr1_2:5248810-5248829 None:intergenic 40.0%
CCTGAAAATGTGGTCCTAAA+AGG - chr1_2:5248807-5248826 Msa0051160:intron 40.0%
GTGGAGTGACATGGAATATA+GGG - chr1_2:5248835-5248854 Msa0051160:intron 40.0%
! GCACATTTTACTTCACGCAA+GGG - chr1_2:5248874-5248893 Msa0051160:intron 40.0%
! ATTTTACTTCACGCAAGGGT+GGG - chr1_2:5248878-5248897 Msa0051160:intron 40.0%
AGTCGTTCTCTTTCAAAGAG+TGG + chr1_2:5248920-5248939 None:intergenic 40.0%
CACCGTTGTACTTAAAGAAC+AGG + chr1_2:5248944-5248963 None:intergenic 40.0%
AAGGGACACAAACAATTCTG+TGG - chr1_2:5249097-5249116 Msa0051160:intron 40.0%
CCTTCATCAACACCATTAGA+AGG + chr1_2:5249137-5249156 None:intergenic 40.0%
!! CCTTCTAATGGTGTTGATGA+AGG - chr1_2:5249134-5249153 Msa0051160:intron 40.0%
! GTTTCAGAAGGTACAGCAAA+TGG + chr1_2:5249203-5249222 None:intergenic 40.0%
GCATCAGACATTAATTGCTC+AGG + chr1_2:5249269-5249288 None:intergenic 40.0%
TGTCCGTTTACCAGTTGTTT+GGG + chr1_2:5249327-5249346 None:intergenic 40.0%
TTGTCCGTTTACCAGTTGTT+TGG + chr1_2:5249328-5249347 None:intergenic 40.0%
AAACAACTGGTAAACGGACA+AGG - chr1_2:5249327-5249346 Msa0051160:intron 40.0%
CTCAGGAGAAAGCTCTTAAT+TGG - chr1_2:5249417-5249436 Msa0051160:intron 40.0%
AAAGCTCTTAATTGGGTGAC+TGG - chr1_2:5249425-5249444 Msa0051160:intron 40.0%
TATCAAATCAATGTCCTGCC+AGG + chr1_2:5249987-5250006 None:intergenic 40.0%
TCAGCTAAGTGTCACAATGT+TGG + chr1_2:5250049-5250068 None:intergenic 40.0%
! ACTTATCAAAGGTGTGTCCA+GGG - chr1_2:5250117-5250136 Msa0051160:CDS 40.0%
! TTTTACCAGTGTCACATGTC+TGG - chr1_2:5250188-5250207 Msa0051160:CDS 40.0%
TGTCTGTGTTGTGTTTGTGT+TGG - chr1_2:5250211-5250230 Msa0051160:CDS 40.0%
!! ACATGGACTTGCTGTTAATG+TGG - chr1_2:5250288-5250307 Msa0051160:intron 40.0%
GTATATAGTTCCTGCGTCTT+TGG + chr1_2:5250374-5250393 None:intergenic 40.0%
TACGCATGGGTAAGAATGAA+TGG - chr1_2:5250747-5250766 Msa0051160:intron 40.0%
ATGGGTAAGAATGAATGGCT+TGG - chr1_2:5250752-5250771 Msa0051160:intron 40.0%
TGGGTAAGAATGAATGGCTT+GGG - chr1_2:5250753-5250772 Msa0051160:intron 40.0%
AACACACGTCAAACTCTTCA+AGG + chr1_2:5250853-5250872 None:intergenic 40.0%
TGAGTTCTACAGGAAAGAAG+AGG - chr1_2:5250990-5251009 Msa0051160:intron 40.0%
GAGTTCTACAGGAAAGAAGA+GGG - chr1_2:5250991-5251010 Msa0051160:intron 40.0%
AGTTCTACAGGAAAGAAGAG+GGG - chr1_2:5250992-5251011 Msa0051160:intron 40.0%
ACACAATTACGCACCTTCAA+TGG + chr1_2:5251062-5251081 None:intergenic 40.0%
GAAAGCAATGGACAAACACT+TGG + chr1_2:5251352-5251371 None:intergenic 40.0%
ATGGGATTACAAAACGGTGG+TGG - chr1_2:5247879-5247898 Msa0051160:three_prime_UTR 45.0%
TGGGATTACAAAACGGTGGT+GGG - chr1_2:5247880-5247899 Msa0051160:three_prime_UTR 45.0%
! TATTAGTGCCGTGGTTTGTG+TGG - chr1_2:5248630-5248649 Msa0051160:CDS 45.0%
! ATTAGTGCCGTGGTTTGTGT+GGG - chr1_2:5248631-5248650 Msa0051160:CDS 45.0%
AATGTGGTCCTAAAAGGTCC+TGG - chr1_2:5248813-5248832 Msa0051160:intron 45.0%
ATATTCCATGTCACTCCACC+AGG + chr1_2:5248834-5248853 None:intergenic 45.0%
GGTGGAGTGACATGGAATAT+AGG - chr1_2:5248834-5248853 Msa0051160:intron 45.0%
ATAGGGCTGACAAGTAGAGA+CGG - chr1_2:5248852-5248871 Msa0051160:intron 45.0%
! GGCACATTTTACTTCACGCA+AGG - chr1_2:5248873-5248892 Msa0051160:intron 45.0%
! CATTTTACTTCACGCAAGGG+TGG - chr1_2:5248877-5248896 Msa0051160:intron 45.0%
CAACGGTGAATCGTTGTTTG+AGG - chr1_2:5248956-5248975 Msa0051160:intron 45.0%
!!! AGGCGGCAGCTTATTTTGTT+CGG - chr1_2:5249012-5249031 Msa0051160:intron 45.0%
TCCACCACCTTGTTCAGTTT+GGG + chr1_2:5249063-5249082 None:intergenic 45.0%
ATCCACCACCTTGTTCAGTT+TGG + chr1_2:5249064-5249083 None:intergenic 45.0%
TGGATGTTCTAGCAAGGGAA+GGG - chr1_2:5249079-5249098 Msa0051160:intron 45.0%
AAGGTACAGCAAATGGCACT+CGG + chr1_2:5249196-5249215 None:intergenic 45.0%
AGACATTAATTGCTCAGGGG+TGG + chr1_2:5249264-5249283 None:intergenic 45.0%
CGTTTACCAGTTGTTTGGGA+CGG + chr1_2:5249323-5249342 None:intergenic 45.0%
CGTCCCAAACAACTGGTAAA+CGG - chr1_2:5249321-5249340 Msa0051160:intron 45.0%
ACAGACGCAACAGCATAAAC+AGG + chr1_2:5249356-5249375 None:intergenic 45.0%
GTCTTCCTCTCTTCTTACTC+GGG + chr1_2:5249379-5249398 None:intergenic 45.0%
GGTCTTCCTCTCTTCTTACT+CGG + chr1_2:5249380-5249399 None:intergenic 45.0%
TGAGAATTAGACGTTCGTGG+CGG + chr1_2:5249401-5249420 None:intergenic 45.0%
TCCTGAGAATTAGACGTTCG+TGG + chr1_2:5249404-5249423 None:intergenic 45.0%
TAAGACTATCTGCGTATCCG+TGG - chr1_2:5249575-5249594 Msa0051160:intron 45.0%
! TGGCCCCTTTGAAAATGTTC+CGG + chr1_2:5249722-5249741 None:intergenic 45.0%
!! GATTTGTTATGTGAACCGCC+TGG - chr1_2:5249966-5249985 Msa0051160:CDS 45.0%
! CACTTATCAAAGGTGTGTCC+AGG - chr1_2:5250116-5250135 Msa0051160:CDS 45.0%
TGTGACAGGCCTTCTATTTG+AGG + chr1_2:5250396-5250415 None:intergenic 45.0%
AAAAACTCTTCAGGTGGCTC+AGG - chr1_2:5250430-5250449 Msa0051160:intron 45.0%
AGTTACAAGCAAGCTCTCCT+CGG + chr1_2:5250465-5250484 None:intergenic 45.0%
CGTAACAATGGAGGACTTAC+TGG - chr1_2:5250797-5250816 Msa0051160:intron 45.0%
AACAATGGAGGACTTACTGG+TGG - chr1_2:5250800-5250819 Msa0051160:intron 45.0%
GTGTGTTTGTTCAAACCAGC+TGG - chr1_2:5250866-5250885 Msa0051160:intron 45.0%
ATGTCATGCAAATGACCAGC+TGG + chr1_2:5250884-5250903 None:intergenic 45.0%
GGAGATTACTCCTCTTACTG+CGG - chr1_2:5250940-5250959 Msa0051160:intron 45.0%
TGCATTCTCCAGGAAAGAAG+AGG - chr1_2:5250963-5250982 Msa0051160:intron 45.0%
GCATTCTCCAGGAAAGAAGA+GGG - chr1_2:5250964-5250983 Msa0051160:intron 45.0%
CATTCTCCAGGAAAGAAGAG+GGG - chr1_2:5250965-5250984 Msa0051160:intron 45.0%
GGAGTTAAGAGAACACTGAC+CGG - chr1_2:5251013-5251032 Msa0051160:intron 45.0%
AATGGCCTCCAGTTCTGTTT+GGG + chr1_2:5251044-5251063 None:intergenic 45.0%
GTCTGAGGAAGTTACGTTGT+TGG - chr1_2:5251083-5251102 Msa0051160:CDS 45.0%
!!! TTTTTATTAAAATTAATACA+TGG - chr1_2:5250271-5250290 Msa0051160:intron 5.0%
! TGGTGGGTGTAGCAGATCTT+GGG - chr1_2:5247896-5247915 Msa0051160:three_prime_UTR 50.0%
ACGAAGACCCACACAAACCA+CGG + chr1_2:5248641-5248660 None:intergenic 50.0%
! TGGTTTGTGTGGGTCTTCGT+AGG - chr1_2:5248641-5248660 Msa0051160:CDS 50.0%
! TCACTCCACCAGGACCTTTT+AGG + chr1_2:5248824-5248843 None:intergenic 50.0%
TGGCGAGAGTTTCTGTGAGA+AGG - chr1_2:5248992-5249011 Msa0051160:intron 50.0%
CGAGAGTTTCTGTGAGAAGG+CGG - chr1_2:5248995-5249014 Msa0051160:intron 50.0%
ACCACCTTGTTCAGTTTGGG+CGG + chr1_2:5249060-5249079 None:intergenic 50.0%
!! AGGTGGTGGATGTTCTAGCA+AGG - chr1_2:5249073-5249092 Msa0051160:intron 50.0%
!! GGTGGTGGATGTTCTAGCAA+GGG - chr1_2:5249074-5249093 Msa0051160:intron 50.0%
GTGGATGTTCTAGCAAGGGA+AGG - chr1_2:5249078-5249097 Msa0051160:intron 50.0%
! GTTTGGGACGGAACAGTTGT+TGG + chr1_2:5249311-5249330 None:intergenic 50.0%
ACTGTTCCGTCCCAAACAAC+TGG - chr1_2:5249314-5249333 Msa0051160:intron 50.0%
CAACTGGTAAACGGACAAGG+AGG - chr1_2:5249330-5249349 Msa0051160:intron 50.0%
TCTGTCCCGAGTAAGAAGAG+AGG - chr1_2:5249371-5249390 Msa0051160:intron 50.0%
GCCACGAACGTCTAATTCTC+AGG - chr1_2:5249400-5249419 Msa0051160:intron 50.0%
CAAATCAATGTCCTGCCAGG+CGG + chr1_2:5249984-5250003 None:intergenic 50.0%
GAATGAAGTCACGCGTGTCA+GGG + chr1_2:5250148-5250167 None:intergenic 50.0%
AGAATGAAGTCACGCGTGTC+AGG + chr1_2:5250149-5250168 None:intergenic 50.0%
AGACACCAGACATGTGACAC+TGG + chr1_2:5250196-5250215 None:intergenic 50.0%
CTTGAGACGATGGAGCAAGA+TGG + chr1_2:5250718-5250737 None:intergenic 50.0%
ATGGAGGACTTACTGGTGGT+TGG - chr1_2:5250804-5250823 Msa0051160:intron 50.0%
AAGAGGGGCTTGAGTTCTAC+AGG - chr1_2:5250980-5250999 Msa0051160:intron 50.0%
CAATGGCCTCCAGTTCTGTT+TGG + chr1_2:5251045-5251064 None:intergenic 50.0%
ACAGAACTGGAGGCCATTGA+AGG - chr1_2:5251046-5251065 Msa0051160:intron 50.0%
GTGCGTAATTGTGTCGTCTG+AGG - chr1_2:5251068-5251087 Msa0051160:CDS 50.0%
!! GTGGTGGGTGTAGCAGATCT+TGG - chr1_2:5247895-5247914 Msa0051160:three_prime_UTR 55.0%
GTGGTCCTAAAAGGTCCTGG+TGG - chr1_2:5248816-5248835 Msa0051160:intron 55.0%
AAGGTCCTGGTGGAGTGACA+TGG - chr1_2:5248826-5248845 Msa0051160:intron 55.0%
GCCCAAACTGAACAAGGTGG+TGG - chr1_2:5249059-5249078 Msa0051160:intron 55.0%
TGTTATGTGAACCGCCTGGC+AGG - chr1_2:5249970-5249989 Msa0051160:CDS 55.0%
! TGCGTCTTTGGAGAGCCCTT+TGG + chr1_2:5250362-5250381 None:intergenic 55.0%
AAAGGGCTCTCCAAAGACGC+AGG - chr1_2:5250361-5250380 Msa0051160:intron 55.0%
GGAGAATGCACCGCAGTAAG+AGG + chr1_2:5250953-5250972 None:intergenic 55.0%
CTTACTGCGGTGCATTCTCC+AGG - chr1_2:5250953-5250972 Msa0051160:intron 55.0%
CTCAAGCCCCTCTTCTTTCC+TGG + chr1_2:5250974-5250993 None:intergenic 55.0%
CAGTTCTGTTTGGGCAGCAC+CGG + chr1_2:5251035-5251054 None:intergenic 55.0%
TGCTGCCCAAACAGAACTGG+AGG - chr1_2:5251036-5251055 Msa0051160:intron 55.0%
TTCAGTTTGGGCGGCAGCCT+CGG + chr1_2:5249051-5249070 None:intergenic 60.0%
GCTGCCGCCCAAACTGAACA+AGG - chr1_2:5249053-5249072 Msa0051160:intron 60.0%
GCCGCCCAAACTGAACAAGG+TGG - chr1_2:5249056-5249075 Msa0051160:intron 60.0%
GAAGTCACGCGTGTCAGGGT+CGG + chr1_2:5250144-5250163 None:intergenic 60.0%
! AGAGCCCTTTGGAGACGCTG+GGG + chr1_2:5250351-5250370 None:intergenic 60.0%
! GAGAGCCCTTTGGAGACGCT+GGG + chr1_2:5250352-5250371 None:intergenic 60.0%
!! CGGTGCTGCCCAAACAGAAC+TGG - chr1_2:5251033-5251052 Msa0051160:intron 60.0%
TCGGAAATGTGGGCACGCCG+AGG - chr1_2:5249031-5249050 Msa0051160:intron 65.0%
ACCTGCCCCAGCGTCTCCAA+AGG - chr1_2:5250343-5250362 Msa0051160:intron 65.0%
CCTGCCCCAGCGTCTCCAAA+GGG - chr1_2:5250344-5250363 Msa0051160:intron 65.0%
! GGAGAGCCCTTTGGAGACGC+TGG + chr1_2:5250353-5250372 None:intergenic 65.0%
GGCTCAGGCAGCATGTACCG+AGG - chr1_2:5250445-5250464 Msa0051160:intron 65.0%
! CCCTTTGGAGACGCTGGGGC+AGG + chr1_2:5250347-5250366 None:intergenic 70.0%
CGCGTGTCAGGGTCGGACCC+TGG + chr1_2:5250137-5250156 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 5247650 5251401 5247650 ID=Msa0051160;Name=Msa0051160
chr1_2 mRNA 5247650 5251401 5247650 ID=Msa0051160-mRNA-1;Parent=Msa0051160;Name=Msa0051160-mRNA-1;_AED=0.11;_eAED=0.11;_QI=229|1|1|1|1|1|4|326|457
chr1_2 exon 5247650 5248362 5247650 ID=Msa0051160-mRNA-1:exon:1508;Parent=Msa0051160-mRNA-1
chr1_2 exon 5248531 5248715 5248531 ID=Msa0051160-mRNA-1:exon:1507;Parent=Msa0051160-mRNA-1
chr1_2 exon 5249605 5250286 5249605 ID=Msa0051160-mRNA-1:exon:1506;Parent=Msa0051160-mRNA-1
chr1_2 exon 5251053 5251401 5251053 ID=Msa0051160-mRNA-1:exon:1505;Parent=Msa0051160-mRNA-1
chr1_2 five_prime_UTR 5251173 5251401 5251173 ID=Msa0051160-mRNA-1:five_prime_utr;Parent=Msa0051160-mRNA-1
chr1_2 CDS 5251053 5251172 5251053 ID=Msa0051160-mRNA-1:cds;Parent=Msa0051160-mRNA-1
chr1_2 CDS 5249605 5250286 5249605 ID=Msa0051160-mRNA-1:cds;Parent=Msa0051160-mRNA-1
chr1_2 CDS 5248531 5248715 5248531 ID=Msa0051160-mRNA-1:cds;Parent=Msa0051160-mRNA-1
chr1_2 CDS 5247976 5248362 5247976 ID=Msa0051160-mRNA-1:cds;Parent=Msa0051160-mRNA-1
chr1_2 three_prime_UTR 5247650 5247975 5247650 ID=Msa0051160-mRNA-1:three_prime_utr;Parent=Msa0051160-mRNA-1
Gene Sequence

>Msa0051160

ATGGGATTACAAAACGGTGGTGGGTGTAGCAGATCTTGGGAAGAAGACATTTATTGGACCCATTTTCAATTCATTCATTTCACTCAATTTCTTCGCTCCAATGATTTTGCTCAACAATTGGCACTTCCCAAAACATTTTCAAACAATGTCAAAAAGAAGCTGCCTGAAAATGTGGTCCTAAAAGGTCCTGGTGGAGTGACATGGAATATAGGGCTGACAAGTAGAGACGGCACATTTTACTTCACGCAAGGGTGGGAACAATTTGTTAAAGACCACTCTTTGAAAGAGAACGACTTCCTGTTCTTTAAGTACAACGGTGAATCGTTGTTTGAGGTTTTAATATTTGATGGCGAGAGTTTCTGTGAGAAGGCGGCAGCTTATTTTGTTCGGAAATGTGGGCACGCCGAGGCTGCCGCCCAAACTGAACAAGGTGGTGGATGTTCTAGCAAGGGAAGGGACACAAACAATTCTGTGGATGAAGTCAATACTCCTTCTAATGGTGTTGATGAAGGTGTTTCACATGAAAAATCTTTGCATCTTAACAGTATCCGAGTGCCATTTGCTGTACCTTCTGAAACTACTAATGGAAAGACTTCTAATGCAGCTGTTGAATCTGCCACCCCTGAGCAATTAATGTCTGATGCAGCAGTCACTGAGACTGAGCCAACAACTGTTCCGTCCCAAACAACTGGTAAACGGACAAGGAGGCCTGTTTATGCTGTTGCGTCTGTCCCGAGTAAGAAGAGAGGAAGACCGCCACGAACGTCTAATTCTCAGGAGAAAGCTCTTAATTGGGTGACTGATGCTGAACCTGCCCCAGCGTCTCCAAAGGGCTCTCCAAAGACGCAGGAACTATATACCTCAAATAGAAGGCCTGTCACAAAAGATGAGATTGAAAAAACTCTTCAGGTGGCTCAGGCAGCATGTACCGAGGAGAGCTTGCTTGTAACTATGCGACCTTCACATGTATACAAGAGATTCTTCGTGTCATTCCCTAATAAGTGGATACTAAACCATCTTGCTCCATCGTCTCAAGATGTGATATTACGCATGGGTAAGAATGAATGGCTTGGGAAATACTGCTATCATAATATTCGTAACAATGGAGGACTTACTGGTGGTTGGAAGTATTTTGCGCTCGACAACAACCTTGAAGAGTTTGACGTGTGTTTGTTCAAACCAGCTGGTCATTTGCATGACATATTGATCTTAGAAATGAGCATTTTTAGAGTTGTTGAGGAGATTACTCCTCTTACTGCGGTGCATTCTCCAGGAAAGAAGAGGGGCTTGAGTTCTACAGGAAAGAAGAGGGGAGTTAAGAGAACACTGACCGGTGCTGCCCAAACAGAACTGGAGGCCATTGAAGGTGCGTAA
Protein sequence

>Msa0051160

MGLQNGGGCSRSWEEDIYWTHFQFIHFTQFLRSNDFAQQLALPKTFSNNVKKKLPENVVLKGPGGVTWNIGLTSRDGTFYFTQGWEQFVKDHSLKENDFLFFKYNGESLFEVLIFDGESFCEKAAAYFVRKCGHAEAAAQTEQGGGCSSKGRDTNNSVDEVNTPSNGVDEGVSHEKSLHLNSIRVPFAVPSETTNGKTSNAAVESATPEQLMSDAAVTETEPTTVPSQTTGKRTRRPVYAVASVPSKKRGRPPRTSNSQEKALNWVTDAEPAPASPKGSPKTQELYTSNRRPVTKDEIEKTLQVAQAACTEESLLVTMRPSHVYKRFFVSFPNKWILNHLAPSSQDVILRMGKNEWLGKYCYHNIRNNGGLTGGWKYFALDNNLEEFDVCLFKPAGHLHDILILEMSIFRVVEEITPLTAVHSPGKKRGLSSTGKKRGVKRTLTGAAQTELEAIEGA*