Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145480 | XP_039688837.1 | 98.468 | 457 | 7 | 0 | 1 | 457 | 1 | 457 | 0.0 | 942 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145480 | sp|Q8RYD1|REM16_ARATH | 52.817 | 142 | 64 | 3 | 4 | 144 | 3 | 142 | 2.78e-44 | 161 |
| Msa0145480 | sp|Q8RYD1|REM16_ARATH | 27.727 | 220 | 130 | 5 | 216 | 410 | 104 | 319 | 4.64e-18 | 88.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145480 | I3SQ62 | 98.468 | 457 | 7 | 0 | 1 | 457 | 1 | 457 | 0.0 | 941 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0145480 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002370 | Msa0145480 | 0.833478 | 5.210714e-56 | -8.615850e-47 |
| Msa0051160 | Msa0145480 | 0.838953 | 2.116406e-57 | -8.615850e-47 |
| Msa0051260 | Msa0145480 | 0.819422 | 1.171450e-52 | -8.615850e-47 |
| Msa0145480 | Msa0580700 | 0.943486 | 1.104168e-102 | -8.615850e-47 |
| Msa0145480 | Msa0700460 | 0.800663 | 1.297017e-48 | -8.615850e-47 |
| Msa0145480 | Msa1096960 | 0.801512 | 8.694562e-49 | -8.615850e-47 |
| Msa0145480 | Msa1147910 | 0.802226 | 6.203103e-49 | -8.615850e-47 |
| Msa0145480 | Msa1163100 | 0.816576 | 5.148917e-52 | -8.615850e-47 |
| Msa0145480 | Msa1240770 | 0.811386 | 7.184450e-51 | -8.615850e-47 |
| Msa0145480 | Msa1315130 | 0.803224 | 3.861071e-49 | -8.615850e-47 |
| Msa0145480 | Msa1315160 | 0.803964 | 2.710791e-49 | -8.615850e-47 |
| Msa0145480 | Msa1321340 | 0.807195 | 5.691693e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145480 | MtrunA17_Chr1g0154251 | 98.246 | 456 | 8 | 0 | 1 | 456 | 1 | 456 | 0.0 | 938 |
| Msa0145480 | MtrunA17_Chr1g0154211 | 49.357 | 389 | 160 | 10 | 10 | 393 | 6 | 362 | 6.87e-111 | 333 |
| Msa0145480 | MtrunA17_Chr1g0154241 | 59.643 | 280 | 99 | 5 | 7 | 285 | 2 | 268 | 1.09e-108 | 322 |
| Msa0145480 | MtrunA17_Chr1g0154101 | 43.779 | 434 | 185 | 12 | 11 | 396 | 168 | 590 | 3.02e-96 | 308 |
| Msa0145480 | MtrunA17_Chr1g0154101 | 69.942 | 173 | 44 | 3 | 6 | 177 | 4 | 169 | 3.75e-73 | 246 |
| Msa0145480 | MtrunA17_Chr1g0154111 | 44.961 | 387 | 160 | 9 | 10 | 393 | 9 | 345 | 1.31e-94 | 297 |
| Msa0145480 | MtrunA17_Chr1g0154111 | 49.561 | 228 | 78 | 6 | 41 | 264 | 368 | 562 | 4.08e-55 | 193 |
| Msa0145480 | MtrunA17_Chr1g0154191 | 43.921 | 403 | 147 | 13 | 7 | 393 | 2 | 341 | 8.15e-89 | 275 |
| Msa0145480 | MtrunA17_Chr1g0154171 | 40.931 | 408 | 172 | 11 | 10 | 414 | 6 | 347 | 1.03e-81 | 256 |
| Msa0145480 | MtrunA17_Chr1g0154131 | 42.228 | 386 | 122 | 12 | 11 | 393 | 168 | 455 | 4.52e-78 | 251 |
| Msa0145480 | MtrunA17_Chr1g0154131 | 67.045 | 176 | 49 | 2 | 2 | 177 | 3 | 169 | 9.13e-71 | 231 |
| Msa0145480 | MtrunA17_Chr1g0154161 | 78.873 | 142 | 24 | 3 | 4 | 144 | 8 | 144 | 3.08e-72 | 231 |
| Msa0145480 | MtrunA17_Chr1g0154071 | 39.323 | 384 | 171 | 10 | 15 | 393 | 145 | 471 | 2.38e-69 | 228 |
| Msa0145480 | MtrunA17_Chr1g0154071 | 72.059 | 136 | 38 | 0 | 2 | 137 | 3 | 138 | 7.88e-63 | 211 |
| Msa0145480 | MtrunA17_Chr1g0154151 | 36.986 | 365 | 135 | 9 | 41 | 393 | 19 | 300 | 5.63e-60 | 199 |
| Msa0145480 | MtrunA17_Chr1g0154041 | 37.255 | 102 | 63 | 1 | 26 | 127 | 15 | 115 | 6.44e-15 | 77.0 |
| Msa0145480 | MtrunA17_Chr3g0131891 | 35.484 | 93 | 59 | 1 | 25 | 116 | 17 | 109 | 1.49e-14 | 74.7 |
| Msa0145480 | MtrunA17_Chr7g0233571 | 36.957 | 92 | 57 | 1 | 26 | 116 | 9 | 100 | 1.23e-13 | 70.1 |
| Msa0145480 | MtrunA17_Chr7g0233561 | 35.870 | 92 | 58 | 1 | 25 | 115 | 16 | 107 | 1.55e-13 | 71.6 |
| Msa0145480 | MtrunA17_Chr7g0233531 | 40.000 | 75 | 45 | 0 | 42 | 116 | 2 | 76 | 2.57e-12 | 67.4 |
| Msa0145480 | MtrunA17_Chr7g0233541 | 36.709 | 79 | 50 | 0 | 42 | 120 | 2 | 80 | 1.88e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145480 | AT4G33280.3 | 35.208 | 409 | 232 | 9 | 4 | 410 | 3 | 380 | 5.29e-69 | 225 |
| Msa0145480 | AT4G33280.2 | 48.780 | 164 | 81 | 3 | 4 | 166 | 3 | 164 | 2.67e-47 | 165 |
| Msa0145480 | AT4G33280.1 | 52.817 | 142 | 64 | 3 | 4 | 144 | 3 | 142 | 2.83e-45 | 161 |
| Msa0145480 | AT4G33280.1 | 27.727 | 220 | 130 | 5 | 216 | 410 | 104 | 319 | 4.72e-19 | 88.6 |
| Msa0145480 | AT3G18990.1 | 24.543 | 383 | 225 | 13 | 38 | 415 | 18 | 341 | 2.55e-23 | 100 |
| Msa0145480 | AT3G18990.2 | 24.538 | 379 | 222 | 13 | 38 | 411 | 18 | 337 | 6.51e-23 | 100 |
| Msa0145480 | AT4G34400.2 | 31.293 | 147 | 94 | 2 | 27 | 173 | 17 | 156 | 2.08e-18 | 87.4 |
| Msa0145480 | AT4G34400.1 | 31.293 | 147 | 94 | 2 | 27 | 173 | 17 | 156 | 2.08e-18 | 87.4 |
| Msa0145480 | AT3G06160.5 | 28.017 | 232 | 124 | 8 | 27 | 255 | 11 | 202 | 3.00e-16 | 79.7 |
| Msa0145480 | AT3G06160.4 | 28.017 | 232 | 124 | 8 | 27 | 255 | 11 | 202 | 3.00e-16 | 79.7 |
| Msa0145480 | AT3G06160.3 | 28.017 | 232 | 124 | 8 | 27 | 255 | 11 | 202 | 3.00e-16 | 79.7 |
| Msa0145480 | AT3G06160.1 | 27.155 | 232 | 126 | 7 | 27 | 255 | 26 | 217 | 3.21e-16 | 80.1 |
| Msa0145480 | AT3G06160.2 | 27.155 | 232 | 126 | 7 | 27 | 255 | 70 | 261 | 4.23e-16 | 80.1 |
| Msa0145480 | AT3G06220.1 | 33.000 | 100 | 65 | 2 | 27 | 126 | 11 | 108 | 3.27e-14 | 71.2 |
| Msa0145480 | AT1G49480.3 | 28.824 | 170 | 111 | 5 | 247 | 415 | 66 | 226 | 1.05e-12 | 67.8 |
| Msa0145480 | AT1G49480.1 | 28.824 | 170 | 111 | 5 | 247 | 415 | 66 | 226 | 1.05e-12 | 67.8 |
| Msa0145480 | AT1G49480.2 | 28.824 | 170 | 111 | 5 | 247 | 415 | 66 | 226 | 1.05e-12 | 67.8 |
| Msa0145480 | AT3G53310.1 | 37.500 | 80 | 50 | 0 | 37 | 116 | 21 | 100 | 3.17e-12 | 67.4 |
| Msa0145480 | AT5G57720.1 | 35.955 | 89 | 56 | 1 | 27 | 114 | 13 | 101 | 5.05e-11 | 63.9 |
Find 138 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTTTAGTATCCACTTATT+AGG | 0.155011 | 1_4:-5177745 | None:intergenic |
| CTCAGGAGAAAGCTCTTAAT+TGG | 0.185662 | 1_4:+5176467 | Msa0145480:CDS |
| CAATGGCCTCCAGTTCTGTT+TGG | 0.239462 | 1_4:-5178092 | None:intergenic |
| CTTGGGAAGAAGACATTTAT+TGG | 0.243378 | 1_4:+5174966 | Msa0145480:CDS |
| TGAAATGAATGAATTGAAAA+TGG | 0.249343 | 1_4:-5174991 | None:intergenic |
| GACATTGTTTGAAAATGTTT+TGG | 0.262691 | 1_4:-5175822 | None:intergenic |
| TGAAATGGGAAAAGAGTTAA+AGG | 0.276728 | 1_4:-5174877 | None:intergenic |
| AGCAGAATCAGATATGAATT+AGG | 0.282702 | 1_4:-5174905 | None:intergenic |
| GTATATAGTTCCTGCGTCTT+TGG | 0.290182 | 1_4:-5177421 | None:intergenic |
| ATGAATTAGGGTTTATGAAA+TGG | 0.297100 | 1_4:-5174892 | None:intergenic |
| CTCAAGCCCCTCTTCTTTCC+TGG | 0.311310 | 1_4:-5178021 | None:intergenic |
| ATCCACCACCTTGTTCAGTT+TGG | 0.318706 | 1_4:-5176111 | None:intergenic |
| TGTGACAGGCCTTCTATTTG+AGG | 0.325138 | 1_4:-5177443 | None:intergenic |
| CGTAACAATGGAGGACTTAC+TGG | 0.329858 | 1_4:+5177847 | Msa0145480:CDS |
| AATGGCCTCCAGTTCTGTTT+GGG | 0.333107 | 1_4:-5178091 | None:intergenic |
| GGTTTAGTATCCACTTATTA+GGG | 0.333478 | 1_4:-5177744 | None:intergenic |
| TCCACCACCTTGTTCAGTTT+GGG | 0.342784 | 1_4:-5176110 | None:intergenic |
| GCAGAATCAGATATGAATTA+GGG | 0.355464 | 1_4:-5174904 | None:intergenic |
| TTGTCCGTTTACCAGTTGTT+TGG | 0.357600 | 1_4:-5176375 | None:intergenic |
| TGAATTAGGGTTTATGAAAT+GGG | 0.358225 | 1_4:-5174891 | None:intergenic |
| CCTGAAAATGTGGTCCTAAA+AGG | 0.366161 | 1_4:+5175857 | Msa0145480:CDS |
| TTCAGTTTGGGCGGCAGCCT+CGG | 0.376086 | 1_4:-5176098 | None:intergenic |
| TGTCCGTTTACCAGTTGTTT+GGG | 0.377248 | 1_4:-5176374 | None:intergenic |
| ATATCTGATTCTGCTTCAAA+TGG | 0.377259 | 1_4:+5174913 | Msa0145480:exon |
| GGTGGAGTGACATGGAATAT+AGG | 0.380908 | 1_4:+5175884 | Msa0145480:CDS |
| TGCGTCTTTGGAGAGCCCTT+TGG | 0.384532 | 1_4:-5177409 | None:intergenic |
| GTACCTTCTGAAACTACTAA+TGG | 0.385556 | 1_4:+5176259 | Msa0145480:CDS |
| CACCGTTGTACTTAAAGAAC+AGG | 0.391008 | 1_4:-5175991 | None:intergenic |
| GGAGAGCCCTTTGGAGACGC+TGG | 0.392912 | 1_4:-5177400 | None:intergenic |
| TATATGTTAACAGTTGTGTT+AGG | 0.411885 | 1_4:+5178169 | Msa0145480:three_prime_UTR |
| GGTCTTCCTCTCTTCTTACT+CGG | 0.421285 | 1_4:-5176427 | None:intergenic |
| CGGTGCTGCCCAAACAGAAC+TGG | 0.423283 | 1_4:+5178083 | Msa0145480:CDS |
| GTGGTGGGTGTAGCAGATCT+TGG | 0.425709 | 1_4:+5174948 | Msa0145480:CDS |
| CCCTTTGGAGACGCTGGGGC+AGG | 0.428621 | 1_4:-5177394 | None:intergenic |
| GAAGTCAATACTCCTTCTAA+TGG | 0.429462 | 1_4:+5176172 | Msa0145480:CDS |
| AACACACGTCAAACTCTTCA+AGG | 0.430454 | 1_4:-5177900 | None:intergenic |
| ACACAATTACGCACCTTCAA+TGG | 0.435249 | 1_4:-5178109 | None:intergenic |
| AACTATATACCTCAAATAGA+AGG | 0.436916 | 1_4:+5177434 | Msa0145480:CDS |
| GCATCAGACATTAATTGCTC+AGG | 0.442937 | 1_4:-5176316 | None:intergenic |
| GTGGAGTGACATGGAATATA+GGG | 0.454700 | 1_4:+5175885 | Msa0145480:CDS |
| CAATTGTTGAGCAAAATCAT+TGG | 0.454715 | 1_4:-5175029 | None:intergenic |
| CAGTTCTGTTTGGGCAGCAC+CGG | 0.454969 | 1_4:-5178082 | None:intergenic |
| GAGAGCCCTTTGGAGACGCT+GGG | 0.458201 | 1_4:-5177399 | None:intergenic |
| CGTCCCAAACAACTGGTAAA+CGG | 0.458610 | 1_4:+5176371 | Msa0145480:CDS |
| ACTGTTCCGTCCCAAACAAC+TGG | 0.462388 | 1_4:+5176364 | Msa0145480:CDS |
| CCTTCATCAACACCATTAGA+AGG | 0.467182 | 1_4:-5176184 | None:intergenic |
| AAGAGGGGCTTGAGTTCTAC+AGG | 0.469641 | 1_4:+5178030 | Msa0145480:CDS |
| TCCTGAGAATTAGACGTTCG+TGG | 0.469709 | 1_4:-5176451 | None:intergenic |
| ACCACGAACGTCTAATTCTC+AGG | 0.472756 | 1_4:+5176450 | Msa0145480:CDS |
| GTCTGAGGAAGTTACGTTGT+TGG | 0.479297 | 1_4:+5178133 | Msa0145480:three_prime_UTR |
| TCAGGAGAAAGCTCTTAATT+GGG | 0.480968 | 1_4:+5176468 | Msa0145480:CDS |
| GGAGAATGCACCGCAGTAAG+AGG | 0.480989 | 1_4:-5178000 | None:intergenic |
| TTTAGTCTAATCTTCTACCT+AGG | 0.482808 | 1_4:+5178253 | Msa0145480:three_prime_UTR |
| ACAGACGCAACAGCATAAAC+AGG | 0.486042 | 1_4:-5176403 | None:intergenic |
| TCCATTGCTTTCTTGAAACA+TGG | 0.489740 | 1_4:+5178408 | Msa0145480:three_prime_UTR |
| ACAGAACTGGAGGCCATTGA+AGG | 0.495326 | 1_4:+5178096 | Msa0145480:CDS |
| TACGCATGGGTAAGAATGAA+TGG | 0.495657 | 1_4:+5177797 | Msa0145480:CDS |
| CTTACTGCGGTGCATTCTCC+AGG | 0.496763 | 1_4:+5178003 | Msa0145480:CDS |
| TGGGTAAGAATGAATGGCTT+GGG | 0.497908 | 1_4:+5177803 | Msa0145480:CDS |
| ATGGGTAAGAATGAATGGCT+TGG | 0.510570 | 1_4:+5177802 | Msa0145480:CDS |
| TATCTGATTCTGCTTCAAAT+GGG | 0.511947 | 1_4:+5174914 | Msa0145480:exon |
| GTTTGGGACGGAACAGTTGT+TGG | 0.513367 | 1_4:-5176358 | None:intergenic |
| ACCTGCCCCAGCGTCTCCAA+AGG | 0.514129 | 1_4:+5177393 | Msa0145480:CDS |
| GTCTTCCTCTCTTCTTACTC+GGG | 0.516995 | 1_4:-5176426 | None:intergenic |
| GAAATGAATGAATTGAAAAT+GGG | 0.517659 | 1_4:-5174990 | None:intergenic |
| CCTTCTAATGGTGTTGATGA+AGG | 0.519085 | 1_4:+5176184 | Msa0145480:CDS |
| ACTAGTCATTCCCTAATAAG+TGG | 0.519210 | 1_4:+5177734 | Msa0145480:intron |
| GTTTCAGAAGGTACAGCAAA+TGG | 0.520424 | 1_4:-5176250 | None:intergenic |
| CTTCAAATGGGATTACAAAA+CGG | 0.520715 | 1_4:+5174926 | Msa0145480:exon |
| TGGTGGGTGTAGCAGATCTT+GGG | 0.526446 | 1_4:+5174949 | Msa0145480:CDS |
| CAACGGTGAATCGTTGTTTG+AGG | 0.529531 | 1_4:+5176006 | Msa0145480:CDS |
| AAAGCTCTTAATTGGGTGAC+TGG | 0.530787 | 1_4:+5176475 | Msa0145480:CDS |
| ATATTCCATGTCACTCCACC+AGG | 0.530935 | 1_4:-5175881 | None:intergenic |
| ATGGGATTACAAAACGGTGG+TGG | 0.534211 | 1_4:+5174932 | Msa0145480:CDS |
| CCTGCCCCAGCGTCTCCAAA+GGG | 0.534279 | 1_4:+5177394 | Msa0145480:CDS |
| ATGTCATGCAAATGACCAGC+TGG | 0.547589 | 1_4:-5177931 | None:intergenic |
| TCAAGATGTGATATTACGCA+TGG | 0.548312 | 1_4:+5177783 | Msa0145480:CDS |
| CATCAGACATTAATTGCTCA+GGG | 0.548758 | 1_4:-5176315 | None:intergenic |
| CGTTTACCAGTTGTTTGGGA+CGG | 0.549463 | 1_4:-5176370 | None:intergenic |
| TGGCGAGAGTTTCTGTGAGA+AGG | 0.555646 | 1_4:+5176042 | Msa0145480:CDS |
| AAGGTCCTGGTGGAGTGACA+TGG | 0.566287 | 1_4:+5175876 | Msa0145480:CDS |
| TGTATACAAGAGATTCTTCG+TGG | 0.566958 | 1_4:+5177549 | Msa0145480:CDS |
| AGTCGTTCTCTTTCAAAGAG+TGG | 0.570224 | 1_4:-5175967 | None:intergenic |
| AATCTCTTGTATACATGTGA+AGG | 0.571018 | 1_4:-5177541 | None:intergenic |
| CTTGAGACGATGGAGCAAGA+TGG | 0.572879 | 1_4:-5177765 | None:intergenic |
| TTTCCATTAGTAGTTTCAGA+AGG | 0.573429 | 1_4:-5176262 | None:intergenic |
| GAGTTCTACAGGAAAGAAGA+GGG | 0.574907 | 1_4:+5178041 | Msa0145480:CDS |
| AAAGAAGCTGCCTGAAAATG+TGG | 0.583717 | 1_4:+5175847 | Msa0145480:CDS |
| GTGTGTTTGTTCAAACCAGC+TGG | 0.583771 | 1_4:+5177916 | Msa0145480:CDS |
| GCTGCCGCCCAAACTGAACA+AGG | 0.584723 | 1_4:+5176103 | Msa0145480:CDS |
| GCATTCTCCAGGAAAGAAGA+GGG | 0.592388 | 1_4:+5178014 | Msa0145480:CDS |
| TTCCTGTTCTTTAAGTACAA+CGG | 0.596255 | 1_4:+5175989 | Msa0145480:CDS |
| AAACAACTGGTAAACGGACA+AGG | 0.598332 | 1_4:+5176377 | Msa0145480:CDS |
| TGCATTCTCCAGGAAAGAAG+AGG | 0.603183 | 1_4:+5178013 | Msa0145480:CDS |
| TGCTGCCCAAACAGAACTGG+AGG | 0.604957 | 1_4:+5178086 | Msa0145480:CDS |
| AGTTACAAGCAAGCTCTCCT+CGG | 0.605075 | 1_4:-5177512 | None:intergenic |
| GAAAGCAATGGACAAACACT+TGG | 0.605736 | 1_4:-5178397 | None:intergenic |
| AAGGTACAGCAAATGGCACT+CGG | 0.606956 | 1_4:-5176243 | None:intergenic |
| CATAATATTCGTAACAATGG+AGG | 0.607755 | 1_4:+5177838 | Msa0145480:CDS |
| AGGTGGTGGATGTTCTAGCA+AGG | 0.607880 | 1_4:+5176123 | Msa0145480:CDS |
| GCCCAAACTGAACAAGGTGG+TGG | 0.609494 | 1_4:+5176109 | Msa0145480:CDS |
| AATGTGGTCCTAAAAGGTCC+TGG | 0.611828 | 1_4:+5175863 | Msa0145480:CDS |
| GTGGATGTTCTAGCAAGGGA+AGG | 0.613993 | 1_4:+5176128 | Msa0145480:CDS |
| TGAGTTCTACAGGAAAGAAG+AGG | 0.614505 | 1_4:+5178040 | Msa0145480:CDS |
| TGGGATTACAAAACGGTGGT+GGG | 0.615464 | 1_4:+5174933 | Msa0145480:CDS |
| AACAATGGAGGACTTACTGG+TGG | 0.616719 | 1_4:+5177850 | Msa0145480:CDS |
| TATCATAATATTCGTAACAA+TGG | 0.617731 | 1_4:+5177835 | Msa0145480:CDS |
| ACCACCTTGTTCAGTTTGGG+CGG | 0.621987 | 1_4:-5176107 | None:intergenic |
| GGTGGTGGATGTTCTAGCAA+GGG | 0.623883 | 1_4:+5176124 | Msa0145480:CDS |
| GTGCGTAATTGTGTCGTCTG+AGG | 0.624827 | 1_4:+5178118 | Msa0145480:exon |
| TTACACATAGTGAATTACCT+AGG | 0.624962 | 1_4:-5178270 | None:intergenic |
| AAAGGGCTCTCCAAAGACGC+AGG | 0.627367 | 1_4:+5177411 | Msa0145480:CDS |
| CAAGATGTGATATTACGCAT+GGG | 0.629761 | 1_4:+5177784 | Msa0145480:CDS |
| AGACATTAATTGCTCAGGGG+TGG | 0.633255 | 1_4:-5176311 | None:intergenic |
| ATGGAGGACTTACTGGTGGG+TGG | 0.638391 | 1_4:+5177854 | Msa0145480:CDS |
| AATATCACATCTTGAGACGA+TGG | 0.639490 | 1_4:-5177775 | None:intergenic |
| GGAGATTACTCCTCTTACTG+CGG | 0.639926 | 1_4:+5177990 | Msa0145480:CDS |
| AGAGCCCTTTGGAGACGCTG+GGG | 0.640012 | 1_4:-5177398 | None:intergenic |
| TCGGAAATGTGGGCACGCCG+AGG | 0.642864 | 1_4:+5176081 | Msa0145480:CDS |
| CGAGAGTTTCTGTGAGAAGG+CGG | 0.644557 | 1_4:+5176045 | Msa0145480:CDS |
| GGAGTTAAGAGAACACTGAC+CGG | 0.646401 | 1_4:+5178063 | Msa0145480:CDS |
| TGGATGTTCTAGCAAGGGAA+GGG | 0.650202 | 1_4:+5176129 | Msa0145480:CDS |
| AAGGGACACAAACAATTCTG+TGG | 0.651587 | 1_4:+5176147 | Msa0145480:CDS |
| GCCCGTGAATGAGAATATGA+AGG | 0.654121 | 1_4:-5178437 | None:intergenic |
| GGCTCAGGCAGCATGTACCG+AGG | 0.663486 | 1_4:+5177495 | Msa0145480:CDS |
| GTGGTCCTAAAAGGTCCTGG+TGG | 0.664078 | 1_4:+5175866 | Msa0145480:CDS |
| TCCATGTTTCAAGAAAGCAA+TGG | 0.674558 | 1_4:-5178409 | None:intergenic |
| ATAGGGCTGACAAGTAGAGA+CGG | 0.678435 | 1_4:+5175902 | Msa0145480:CDS |
| ACAATGGAGGACTTACTGGT+GGG | 0.682704 | 1_4:+5177851 | Msa0145480:CDS |
| TCTGTCCCGAGTAAGAAGAG+AGG | 0.684134 | 1_4:+5176421 | Msa0145480:CDS |
| AGTTCTACAGGAAAGAAGAG+GGG | 0.697073 | 1_4:+5178042 | Msa0145480:CDS |
| CAAATGGGATTACAAAACGG+TGG | 0.705155 | 1_4:+5174929 | Msa0145480:exon |
| CATTCTCCAGGAAAGAAGAG+GGG | 0.708428 | 1_4:+5178015 | Msa0145480:CDS |
| TGAGAATTAGACGTTCGTGG+TGG | 0.713597 | 1_4:-5176448 | None:intergenic |
| CGTGAATGAGAATATGAAGG+TGG | 0.720594 | 1_4:-5178434 | None:intergenic |
| GCCGCCCAAACTGAACAAGG+TGG | 0.731431 | 1_4:+5176106 | Msa0145480:CDS |
| ATCAGACATTAATTGCTCAG+GGG | 0.741591 | 1_4:-5176314 | None:intergenic |
| CAACTGGTAAACGGACAAGG+AGG | 0.752519 | 1_4:+5176380 | Msa0145480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAATAAAAATAATCATAAT+TGG | + | chr1_4:5176939-5176958 | Msa0145480:intron | 10.0% |
| !!! | TTATTTTGATTTTGAATAAC+CGG | + | chr1_4:5176750-5176769 | Msa0145480:intron | 15.0% |
| !! | AAGTTAAAAAAGTAAAGTAA+GGG | - | chr1_4:5177588-5177607 | None:intergenic | 15.0% |
| !! | ATAAAAATAAAAACACAATG+AGG | - | chr1_4:5177645-5177664 | None:intergenic | 15.0% |
| !! | TATAATAAAGTTAAAAATGC+AGG | - | chr1_4:5177678-5177697 | None:intergenic | 15.0% |
| !! | GAAATGAATGAATTGAAAAT+GGG | - | chr1_4:5174993-5175012 | None:intergenic | 20.0% |
| !! | TGAAATGAATGAATTGAAAA+TGG | - | chr1_4:5174994-5175013 | None:intergenic | 20.0% |
| !! | CTTTCAGAAAAAAAATTATG+TGG | - | chr1_4:5175232-5175251 | None:intergenic | 20.0% |
| !!! | GTCTTTTTAAATAATGTTGT+AGG | + | chr1_4:5175390-5175409 | Msa0145480:intron | 20.0% |
| !! | CATATACTTGATATTATGAA+TGG | + | chr1_4:5175603-5175622 | Msa0145480:intron | 20.0% |
| !!! | ACATTGTTTGAAAATGTTTT+GGG | - | chr1_4:5175824-5175843 | None:intergenic | 20.0% |
| !!! | TTTGAGGTTTTAATATTTGA+TGG | + | chr1_4:5176022-5176041 | Msa0145480:CDS | 20.0% |
| !! | AATCTCTCATTACTAAAATT+TGG | - | chr1_4:5176968-5176987 | None:intergenic | 20.0% |
| !!! | TTTTAGTAATGAGAGATTTT+TGG | + | chr1_4:5176970-5176989 | Msa0145480:intron | 20.0% |
| !!! | TTTAGTAATGAGAGATTTTT+GGG | + | chr1_4:5176971-5176990 | Msa0145480:intron | 20.0% |
| !! | CAAGTTAAAAAAGTAAAGTA+AGG | - | chr1_4:5177589-5177608 | None:intergenic | 20.0% |
| !! | TATCATAATATTCGTAACAA+TGG | + | chr1_4:5177835-5177854 | Msa0145480:CDS | 20.0% |
| !!! | TCAGTTTTGCAAAATAATTA+GGG | - | chr1_4:5178353-5178372 | None:intergenic | 20.0% |
| !!! | TTCAGTTTTGCAAAATAATT+AGG | - | chr1_4:5178354-5178373 | None:intergenic | 20.0% |
| ! | TGAATTAGGGTTTATGAAAT+GGG | - | chr1_4:5174894-5174913 | None:intergenic | 25.0% |
| ! | ATGAATTAGGGTTTATGAAA+TGG | - | chr1_4:5174895-5174914 | None:intergenic | 25.0% |
| !!! | TGTCAAGTTTTTTTGATGAA+AGG | + | chr1_4:5175323-5175342 | Msa0145480:intron | 25.0% |
| !! | GAACTATGCATTTACATTTT+AGG | + | chr1_4:5175490-5175509 | Msa0145480:intron | 25.0% |
| !!! | GTAGGTTATAATTGACTTTT+AGG | + | chr1_4:5175709-5175728 | Msa0145480:intron | 25.0% |
| !!! | GAAGTTTATATTTTGTTTGC+AGG | + | chr1_4:5175793-5175812 | Msa0145480:intron | 25.0% |
| !! | GACATTGTTTGAAAATGTTT+TGG | - | chr1_4:5175825-5175844 | None:intergenic | 25.0% |
| !! | TTTTTACTTATGAATGACGA+CGG | + | chr1_4:5176503-5176522 | Msa0145480:intron | 25.0% |
| ! | AAAGAAACATTTAACACTTG+TGG | + | chr1_4:5176526-5176545 | Msa0145480:intron | 25.0% |
| !!! | GTGACATTTGTTGTTTATAA+TGG | - | chr1_4:5176652-5176671 | None:intergenic | 25.0% |
| ! | AGTTACATGAAATTGGAATT+TGG | - | chr1_4:5176792-5176811 | None:intergenic | 25.0% |
| ! | CCTATATAGTTACATGAAAT+TGG | - | chr1_4:5176799-5176818 | None:intergenic | 25.0% |
| ! | CCAATTTCATGTAACTATAT+AGG | + | chr1_4:5176796-5176815 | Msa0145480:intron | 25.0% |
| !!! | GATATTCCATCATTACTTTT+TGG | + | chr1_4:5176861-5176880 | Msa0145480:intron | 25.0% |
| ! | AACTATATACCTCAAATAGA+AGG | + | chr1_4:5177434-5177453 | Msa0145480:CDS | 25.0% |
| ! | TATATGTTAACAGTTGTGTT+AGG | + | chr1_4:5178169-5178188 | Msa0145480:three_prime_UTR | 25.0% |
| !! | ATCGTTTTATGTCTATGTTT+TGG | + | chr1_4:5178214-5178233 | Msa0145480:three_prime_UTR | 25.0% |
| ! | GTACAAAGAAGCAATTTTTG+TGG | - | chr1_4:5174772-5174791 | None:intergenic | 30.0% |
| !!! | TACTGCTTTTTTCTGATTCT+AGG | + | chr1_4:5174789-5174808 | Msa0145480:five_prime_UTR | 30.0% |
| !!! | ACTGCTTTTTTCTGATTCTA+GGG | + | chr1_4:5174790-5174809 | Msa0145480:five_prime_UTR | 30.0% |
| TGAAATGGGAAAAGAGTTAA+AGG | - | chr1_4:5174880-5174899 | None:intergenic | 30.0% | |
| GCAGAATCAGATATGAATTA+GGG | - | chr1_4:5174907-5174926 | None:intergenic | 30.0% | |
| AGCAGAATCAGATATGAATT+AGG | - | chr1_4:5174908-5174927 | None:intergenic | 30.0% | |
| ATATCTGATTCTGCTTCAAA+TGG | + | chr1_4:5174913-5174932 | Msa0145480:exon | 30.0% | |
| TATCTGATTCTGCTTCAAAT+GGG | + | chr1_4:5174914-5174933 | Msa0145480:exon | 30.0% | |
| CTTCAAATGGGATTACAAAA+CGG | + | chr1_4:5174926-5174945 | Msa0145480:exon | 30.0% | |
| CAATTGTTGAGCAAAATCAT+TGG | - | chr1_4:5175032-5175051 | None:intergenic | 30.0% | |
| ! | CAATGATTTTGCTCAACAAT+TGG | + | chr1_4:5175030-5175049 | Msa0145480:CDS | 30.0% |
| AAATTTCATCACTTTCAGAG+GGG | - | chr1_4:5175131-5175150 | None:intergenic | 30.0% | |
| CAAATTTCATCACTTTCAGA+GGG | - | chr1_4:5175132-5175151 | None:intergenic | 30.0% | |
| ! | CTCTGAAAGTGATGAAATTT+GGG | + | chr1_4:5175131-5175150 | Msa0145480:intron | 30.0% |
| TTGCAAGAAAGTTTGATCTT+TGG | + | chr1_4:5175283-5175302 | Msa0145480:intron | 30.0% | |
| TGATTTATGTGGTTGATCTT+GGG | + | chr1_4:5175550-5175569 | Msa0145480:intron | 30.0% | |
| !!! | ATGAATGGCTGTTTTTGAAT+CGG | + | chr1_4:5175618-5175637 | Msa0145480:intron | 30.0% |
| TAATATTGACATGTTGACAC+CGG | - | chr1_4:5175665-5175684 | None:intergenic | 30.0% | |
| TTCCTGTTCTTTAAGTACAA+CGG | + | chr1_4:5175989-5176008 | Msa0145480:CDS | 30.0% | |
| !!! | CTTATTTTGTTCGGAAATGT+GGG | + | chr1_4:5176071-5176090 | Msa0145480:CDS | 30.0% |
| TTTCCATTAGTAGTTTCAGA+AGG | - | chr1_4:5176265-5176284 | None:intergenic | 30.0% | |
| TTTAACACTTGTGGTAAAAG+CGG | + | chr1_4:5176535-5176554 | Msa0145480:intron | 30.0% | |
| GTCTTAACTATTGCATTCAT+TGG | - | chr1_4:5176611-5176630 | None:intergenic | 30.0% | |
| !! | TTGTTGTTTATAATGGTCCA+CGG | - | chr1_4:5176645-5176664 | None:intergenic | 30.0% |
| ! | AATAACCGGAACATTTTCAA+AGG | + | chr1_4:5176764-5176783 | Msa0145480:intron | 30.0% |
| ! | ATAACCGGAACATTTTCAAA+GGG | + | chr1_4:5176765-5176784 | Msa0145480:intron | 30.0% |
| CATGTAACTATATAGGTGAT+AGG | + | chr1_4:5176803-5176822 | Msa0145480:intron | 30.0% | |
| ATATAGGTGATAGGAAAAAG+TGG | + | chr1_4:5176812-5176831 | Msa0145480:intron | 30.0% | |
| TATAGGTGATAGGAAAAAGT+GGG | + | chr1_4:5176813-5176832 | Msa0145480:intron | 30.0% | |
| CACTCATTCATTCAAACATT+TGG | - | chr1_4:5176841-5176860 | None:intergenic | 30.0% | |
| CAAATGTTTGAATGAATGAG+TGG | + | chr1_4:5176839-5176858 | Msa0145480:intron | 30.0% | |
| ! | TGTGGTCTAGAATTAAATTG+AGG | - | chr1_4:5176890-5176909 | None:intergenic | 30.0% |
| CTCTCATTACTAAAATTTGG+TGG | - | chr1_4:5176965-5176984 | None:intergenic | 30.0% | |
| TGAGATTGAAAAAACTCTTC+AGG | + | chr1_4:5177471-5177490 | Msa0145480:CDS | 30.0% | |
| AATCTCTTGTATACATGTGA+AGG | - | chr1_4:5177544-5177563 | None:intergenic | 30.0% | |
| GGTTTAGTATCCACTTATTA+GGG | - | chr1_4:5177747-5177766 | None:intergenic | 30.0% | |
| TGGTTTAGTATCCACTTATT+AGG | - | chr1_4:5177748-5177767 | None:intergenic | 30.0% | |
| CATAATATTCGTAACAATGG+AGG | + | chr1_4:5177838-5177857 | Msa0145480:CDS | 30.0% | |
| !! | CTATGTTTTGGATGTTATGA+TGG | + | chr1_4:5178226-5178245 | Msa0145480:three_prime_UTR | 30.0% |
| TTTAGTCTAATCTTCTACCT+AGG | + | chr1_4:5178253-5178272 | Msa0145480:three_prime_UTR | 30.0% | |
| TTACACATAGTGAATTACCT+AGG | - | chr1_4:5178273-5178292 | None:intergenic | 30.0% | |
| ! | GTTTTGCAAAATAATTAGGG+TGG | - | chr1_4:5178350-5178369 | None:intergenic | 30.0% |
| CTTGGGAAGAAGACATTTAT+TGG | + | chr1_4:5174966-5174985 | Msa0145480:CDS | 35.0% | |
| CCAAATTTCATCACTTTCAG+AGG | - | chr1_4:5175133-5175152 | None:intergenic | 35.0% | |
| ! | CCTCTGAAAGTGATGAAATT+TGG | + | chr1_4:5175130-5175149 | Msa0145480:intron | 35.0% |
| TTTCATGCATGTGTCATGAT+AGG | + | chr1_4:5175517-5175536 | Msa0145480:intron | 35.0% | |
| TTCATGCATGTGTCATGATA+GGG | + | chr1_4:5175518-5175537 | Msa0145480:intron | 35.0% | |
| GGTCATGTTTGTGATTTATG+TGG | + | chr1_4:5175539-5175558 | Msa0145480:intron | 35.0% | |
| GTGATTTATGTGGTTGATCT+TGG | + | chr1_4:5175549-5175568 | Msa0145480:intron | 35.0% | |
| AGGCATTTAGTCTACTAAGA+TGG | + | chr1_4:5175729-5175748 | Msa0145480:intron | 35.0% | |
| !!! | GCTTATTTTGTTCGGAAATG+TGG | + | chr1_4:5176070-5176089 | Msa0145480:CDS | 35.0% |
| GAAGTCAATACTCCTTCTAA+TGG | + | chr1_4:5176172-5176191 | Msa0145480:CDS | 35.0% | |
| !! | GTACCTTCTGAAACTACTAA+TGG | + | chr1_4:5176259-5176278 | Msa0145480:CDS | 35.0% |
| ATCAGACATTAATTGCTCAG+GGG | - | chr1_4:5176317-5176336 | None:intergenic | 35.0% | |
| CATCAGACATTAATTGCTCA+GGG | - | chr1_4:5176318-5176337 | None:intergenic | 35.0% | |
| TCAGGAGAAAGCTCTTAATT+GGG | + | chr1_4:5176468-5176487 | Msa0145480:CDS | 35.0% | |
| CAGTAGACAGATATGTTTCT+TGG | - | chr1_4:5176674-5176693 | None:intergenic | 35.0% | |
| ! | TAACCGGAACATTTTCAAAG+GGG | + | chr1_4:5176766-5176785 | Msa0145480:intron | 35.0% |
| AGGACTCCAAAAAGTAATGA+TGG | - | chr1_4:5176870-5176889 | None:intergenic | 35.0% | |
| CAAGTTTACTATGCTTCTTG+TGG | - | chr1_4:5176908-5176927 | None:intergenic | 35.0% | |
| !!! | AGATTTTTGGGTAGAAACAG+TGG | + | chr1_4:5176983-5177002 | Msa0145480:intron | 35.0% |
| !! | ACACTTAGCTGATGTTTTTG+TGG | + | chr1_4:5177107-5177126 | Msa0145480:intron | 35.0% |
| ! | GCAGTTTTCTCACTTATCAA+AGG | + | chr1_4:5177156-5177175 | Msa0145480:intron | 35.0% |
| ! | TCAATCTCATCTTTTGTGAC+AGG | - | chr1_4:5177460-5177479 | None:intergenic | 35.0% |
| GATTGAAAAAACTCTTCAGG+TGG | + | chr1_4:5177474-5177493 | Msa0145480:CDS | 35.0% | |
| TGTATACAAGAGATTCTTCG+TGG | + | chr1_4:5177549-5177568 | Msa0145480:CDS | 35.0% | |
| ACTAGTCATTCCCTAATAAG+TGG | + | chr1_4:5177734-5177753 | Msa0145480:intron | 35.0% | |
| AATATCACATCTTGAGACGA+TGG | - | chr1_4:5177778-5177797 | None:intergenic | 35.0% | |
| TCAAGATGTGATATTACGCA+TGG | + | chr1_4:5177783-5177802 | Msa0145480:CDS | 35.0% | |
| CAAGATGTGATATTACGCAT+GGG | + | chr1_4:5177784-5177803 | Msa0145480:CDS | 35.0% | |
| !!! | GAGCATTTTTAGAGTTGTTG+AGG | + | chr1_4:5177969-5177988 | Msa0145480:CDS | 35.0% |
| !!! | GCAGTAGCTAGACTTTTTTA+AGG | + | chr1_4:5178303-5178322 | Msa0145480:three_prime_UTR | 35.0% |
| TCCATTGCTTTCTTGAAACA+TGG | + | chr1_4:5178408-5178427 | Msa0145480:three_prime_UTR | 35.0% | |
| TCCATGTTTCAAGAAAGCAA+TGG | - | chr1_4:5178412-5178431 | None:intergenic | 35.0% | |
| CAAATGGGATTACAAAACGG+TGG | + | chr1_4:5174929-5174948 | Msa0145480:exon | 40.0% | |
| AGTTATGATCTTCGTAACGC+CGG | + | chr1_4:5175643-5175662 | Msa0145480:intron | 40.0% | |
| ACATGTCAATATTAGTGCCG+TGG | + | chr1_4:5175671-5175690 | Msa0145480:intron | 40.0% | |
| AAAGAAGCTGCCTGAAAATG+TGG | + | chr1_4:5175847-5175866 | Msa0145480:CDS | 40.0% | |
| !!! | CCTTTTAGGACCACATTTTC+AGG | - | chr1_4:5175860-5175879 | None:intergenic | 40.0% |
| CCTGAAAATGTGGTCCTAAA+AGG | + | chr1_4:5175857-5175876 | Msa0145480:CDS | 40.0% | |
| GTGGAGTGACATGGAATATA+GGG | + | chr1_4:5175885-5175904 | Msa0145480:CDS | 40.0% | |
| ! | GCACATTTTACTTCACGCAA+GGG | + | chr1_4:5175924-5175943 | Msa0145480:CDS | 40.0% |
| ! | ATTTTACTTCACGCAAGGGT+GGG | + | chr1_4:5175928-5175947 | Msa0145480:CDS | 40.0% |
| AGTCGTTCTCTTTCAAAGAG+TGG | - | chr1_4:5175970-5175989 | None:intergenic | 40.0% | |
| CACCGTTGTACTTAAAGAAC+AGG | - | chr1_4:5175994-5176013 | None:intergenic | 40.0% | |
| AAGGGACACAAACAATTCTG+TGG | + | chr1_4:5176147-5176166 | Msa0145480:CDS | 40.0% | |
| CCTTCATCAACACCATTAGA+AGG | - | chr1_4:5176187-5176206 | None:intergenic | 40.0% | |
| !! | CCTTCTAATGGTGTTGATGA+AGG | + | chr1_4:5176184-5176203 | Msa0145480:CDS | 40.0% |
| ! | GTTTCAGAAGGTACAGCAAA+TGG | - | chr1_4:5176253-5176272 | None:intergenic | 40.0% |
| GCATCAGACATTAATTGCTC+AGG | - | chr1_4:5176319-5176338 | None:intergenic | 40.0% | |
| TGTCCGTTTACCAGTTGTTT+GGG | - | chr1_4:5176377-5176396 | None:intergenic | 40.0% | |
| TTGTCCGTTTACCAGTTGTT+TGG | - | chr1_4:5176378-5176397 | None:intergenic | 40.0% | |
| AAACAACTGGTAAACGGACA+AGG | + | chr1_4:5176377-5176396 | Msa0145480:CDS | 40.0% | |
| CTCAGGAGAAAGCTCTTAAT+TGG | + | chr1_4:5176467-5176486 | Msa0145480:CDS | 40.0% | |
| AAAGCTCTTAATTGGGTGAC+TGG | + | chr1_4:5176475-5176494 | Msa0145480:CDS | 40.0% | |
| TATCAAATCAATGTCCTGCC+AGG | - | chr1_4:5177037-5177056 | None:intergenic | 40.0% | |
| TCAGCTAAGTGTCACAATGT+TGG | - | chr1_4:5177099-5177118 | None:intergenic | 40.0% | |
| ! | ACTTATCAAAGGTGTGTCCA+GGG | + | chr1_4:5177167-5177186 | Msa0145480:intron | 40.0% |
| ! | TTTTACCAGTGTCACATGTC+TGG | + | chr1_4:5177238-5177257 | Msa0145480:intron | 40.0% |
| TGTCTGTGTTGTGTTTGTGT+TGG | + | chr1_4:5177261-5177280 | Msa0145480:intron | 40.0% | |
| !! | ACATGGACTTGCTGTTAATG+TGG | + | chr1_4:5177338-5177357 | Msa0145480:intron | 40.0% |
| GTATATAGTTCCTGCGTCTT+TGG | - | chr1_4:5177424-5177443 | None:intergenic | 40.0% | |
| TACGCATGGGTAAGAATGAA+TGG | + | chr1_4:5177797-5177816 | Msa0145480:CDS | 40.0% | |
| ATGGGTAAGAATGAATGGCT+TGG | + | chr1_4:5177802-5177821 | Msa0145480:CDS | 40.0% | |
| TGGGTAAGAATGAATGGCTT+GGG | + | chr1_4:5177803-5177822 | Msa0145480:CDS | 40.0% | |
| AACACACGTCAAACTCTTCA+AGG | - | chr1_4:5177903-5177922 | None:intergenic | 40.0% | |
| TGAGTTCTACAGGAAAGAAG+AGG | + | chr1_4:5178040-5178059 | Msa0145480:CDS | 40.0% | |
| GAGTTCTACAGGAAAGAAGA+GGG | + | chr1_4:5178041-5178060 | Msa0145480:CDS | 40.0% | |
| AGTTCTACAGGAAAGAAGAG+GGG | + | chr1_4:5178042-5178061 | Msa0145480:CDS | 40.0% | |
| ACACAATTACGCACCTTCAA+TGG | - | chr1_4:5178112-5178131 | None:intergenic | 40.0% | |
| GAAAGCAATGGACAAACACT+TGG | - | chr1_4:5178400-5178419 | None:intergenic | 40.0% | |
| ATGGGATTACAAAACGGTGG+TGG | + | chr1_4:5174932-5174951 | Msa0145480:CDS | 45.0% | |
| TGGGATTACAAAACGGTGGT+GGG | + | chr1_4:5174933-5174952 | Msa0145480:CDS | 45.0% | |
| ! | TATTAGTGCCGTGGTTTGTG+TGG | + | chr1_4:5175680-5175699 | Msa0145480:intron | 45.0% |
| ! | ATTAGTGCCGTGGTTTGTGT+GGG | + | chr1_4:5175681-5175700 | Msa0145480:intron | 45.0% |
| AATGTGGTCCTAAAAGGTCC+TGG | + | chr1_4:5175863-5175882 | Msa0145480:CDS | 45.0% | |
| ATATTCCATGTCACTCCACC+AGG | - | chr1_4:5175884-5175903 | None:intergenic | 45.0% | |
| GGTGGAGTGACATGGAATAT+AGG | + | chr1_4:5175884-5175903 | Msa0145480:CDS | 45.0% | |
| ATAGGGCTGACAAGTAGAGA+CGG | + | chr1_4:5175902-5175921 | Msa0145480:CDS | 45.0% | |
| ! | GGCACATTTTACTTCACGCA+AGG | + | chr1_4:5175923-5175942 | Msa0145480:CDS | 45.0% |
| ! | CATTTTACTTCACGCAAGGG+TGG | + | chr1_4:5175927-5175946 | Msa0145480:CDS | 45.0% |
| CAACGGTGAATCGTTGTTTG+AGG | + | chr1_4:5176006-5176025 | Msa0145480:CDS | 45.0% | |
| !!! | AGGCGGCAGCTTATTTTGTT+CGG | + | chr1_4:5176062-5176081 | Msa0145480:CDS | 45.0% |
| TCCACCACCTTGTTCAGTTT+GGG | - | chr1_4:5176113-5176132 | None:intergenic | 45.0% | |
| ATCCACCACCTTGTTCAGTT+TGG | - | chr1_4:5176114-5176133 | None:intergenic | 45.0% | |
| TGGATGTTCTAGCAAGGGAA+GGG | + | chr1_4:5176129-5176148 | Msa0145480:CDS | 45.0% | |
| AAGGTACAGCAAATGGCACT+CGG | - | chr1_4:5176246-5176265 | None:intergenic | 45.0% | |
| AGACATTAATTGCTCAGGGG+TGG | - | chr1_4:5176314-5176333 | None:intergenic | 45.0% | |
| CGTTTACCAGTTGTTTGGGA+CGG | - | chr1_4:5176373-5176392 | None:intergenic | 45.0% | |
| CGTCCCAAACAACTGGTAAA+CGG | + | chr1_4:5176371-5176390 | Msa0145480:CDS | 45.0% | |
| ACAGACGCAACAGCATAAAC+AGG | - | chr1_4:5176406-5176425 | None:intergenic | 45.0% | |
| GTCTTCCTCTCTTCTTACTC+GGG | - | chr1_4:5176429-5176448 | None:intergenic | 45.0% | |
| GGTCTTCCTCTCTTCTTACT+CGG | - | chr1_4:5176430-5176449 | None:intergenic | 45.0% | |
| TGAGAATTAGACGTTCGTGG+TGG | - | chr1_4:5176451-5176470 | None:intergenic | 45.0% | |
| ACCACGAACGTCTAATTCTC+AGG | + | chr1_4:5176450-5176469 | Msa0145480:CDS | 45.0% | |
| TCCTGAGAATTAGACGTTCG+TGG | - | chr1_4:5176454-5176473 | None:intergenic | 45.0% | |
| TAAGACTATCTGCGTATCCG+TGG | + | chr1_4:5176625-5176644 | Msa0145480:intron | 45.0% | |
| ! | TGGCCCCTTTGAAAATGTTC+CGG | - | chr1_4:5176772-5176791 | None:intergenic | 45.0% |
| !! | GATTTGTTATGTGAACCGCC+TGG | + | chr1_4:5177016-5177035 | Msa0145480:intron | 45.0% |
| ! | CACTTATCAAAGGTGTGTCC+AGG | + | chr1_4:5177166-5177185 | Msa0145480:intron | 45.0% |
| TGTGACAGGCCTTCTATTTG+AGG | - | chr1_4:5177446-5177465 | None:intergenic | 45.0% | |
| AAAAACTCTTCAGGTGGCTC+AGG | + | chr1_4:5177480-5177499 | Msa0145480:CDS | 45.0% | |
| AGTTACAAGCAAGCTCTCCT+CGG | - | chr1_4:5177515-5177534 | None:intergenic | 45.0% | |
| CGTAACAATGGAGGACTTAC+TGG | + | chr1_4:5177847-5177866 | Msa0145480:CDS | 45.0% | |
| AACAATGGAGGACTTACTGG+TGG | + | chr1_4:5177850-5177869 | Msa0145480:CDS | 45.0% | |
| ACAATGGAGGACTTACTGGT+GGG | + | chr1_4:5177851-5177870 | Msa0145480:CDS | 45.0% | |
| GTGTGTTTGTTCAAACCAGC+TGG | + | chr1_4:5177916-5177935 | Msa0145480:CDS | 45.0% | |
| ATGTCATGCAAATGACCAGC+TGG | - | chr1_4:5177934-5177953 | None:intergenic | 45.0% | |
| GGAGATTACTCCTCTTACTG+CGG | + | chr1_4:5177990-5178009 | Msa0145480:CDS | 45.0% | |
| TGCATTCTCCAGGAAAGAAG+AGG | + | chr1_4:5178013-5178032 | Msa0145480:CDS | 45.0% | |
| GCATTCTCCAGGAAAGAAGA+GGG | + | chr1_4:5178014-5178033 | Msa0145480:CDS | 45.0% | |
| CATTCTCCAGGAAAGAAGAG+GGG | + | chr1_4:5178015-5178034 | Msa0145480:CDS | 45.0% | |
| GGAGTTAAGAGAACACTGAC+CGG | + | chr1_4:5178063-5178082 | Msa0145480:CDS | 45.0% | |
| AATGGCCTCCAGTTCTGTTT+GGG | - | chr1_4:5178094-5178113 | None:intergenic | 45.0% | |
| GTCTGAGGAAGTTACGTTGT+TGG | + | chr1_4:5178133-5178152 | Msa0145480:three_prime_UTR | 45.0% | |
| !!! | TTTTTATTAAAATTAATACA+TGG | + | chr1_4:5177321-5177340 | Msa0145480:intron | 5.0% |
| ! | TGGTGGGTGTAGCAGATCTT+GGG | + | chr1_4:5174949-5174968 | Msa0145480:CDS | 50.0% |
| ACGAAGACCCACACAAACCA+CGG | - | chr1_4:5175691-5175710 | None:intergenic | 50.0% | |
| ! | TGGTTTGTGTGGGTCTTCGT+AGG | + | chr1_4:5175691-5175710 | Msa0145480:intron | 50.0% |
| ! | TCACTCCACCAGGACCTTTT+AGG | - | chr1_4:5175874-5175893 | None:intergenic | 50.0% |
| TGGCGAGAGTTTCTGTGAGA+AGG | + | chr1_4:5176042-5176061 | Msa0145480:CDS | 50.0% | |
| CGAGAGTTTCTGTGAGAAGG+CGG | + | chr1_4:5176045-5176064 | Msa0145480:CDS | 50.0% | |
| ACCACCTTGTTCAGTTTGGG+CGG | - | chr1_4:5176110-5176129 | None:intergenic | 50.0% | |
| !! | AGGTGGTGGATGTTCTAGCA+AGG | + | chr1_4:5176123-5176142 | Msa0145480:CDS | 50.0% |
| !! | GGTGGTGGATGTTCTAGCAA+GGG | + | chr1_4:5176124-5176143 | Msa0145480:CDS | 50.0% |
| GTGGATGTTCTAGCAAGGGA+AGG | + | chr1_4:5176128-5176147 | Msa0145480:CDS | 50.0% | |
| ! | GTTTGGGACGGAACAGTTGT+TGG | - | chr1_4:5176361-5176380 | None:intergenic | 50.0% |
| ACTGTTCCGTCCCAAACAAC+TGG | + | chr1_4:5176364-5176383 | Msa0145480:CDS | 50.0% | |
| CAACTGGTAAACGGACAAGG+AGG | + | chr1_4:5176380-5176399 | Msa0145480:CDS | 50.0% | |
| TCTGTCCCGAGTAAGAAGAG+AGG | + | chr1_4:5176421-5176440 | Msa0145480:CDS | 50.0% | |
| CAAATCAATGTCCTGCCAGG+CGG | - | chr1_4:5177034-5177053 | None:intergenic | 50.0% | |
| GAATGAAGTCACGCGTGTCA+GGG | - | chr1_4:5177198-5177217 | None:intergenic | 50.0% | |
| AGAATGAAGTCACGCGTGTC+AGG | - | chr1_4:5177199-5177218 | None:intergenic | 50.0% | |
| AGACACCAGACATGTGACAC+TGG | - | chr1_4:5177246-5177265 | None:intergenic | 50.0% | |
| CTTGAGACGATGGAGCAAGA+TGG | - | chr1_4:5177768-5177787 | None:intergenic | 50.0% | |
| AAGAGGGGCTTGAGTTCTAC+AGG | + | chr1_4:5178030-5178049 | Msa0145480:CDS | 50.0% | |
| CAATGGCCTCCAGTTCTGTT+TGG | - | chr1_4:5178095-5178114 | None:intergenic | 50.0% | |
| ACAGAACTGGAGGCCATTGA+AGG | + | chr1_4:5178096-5178115 | Msa0145480:CDS | 50.0% | |
| GTGCGTAATTGTGTCGTCTG+AGG | + | chr1_4:5178118-5178137 | Msa0145480:exon | 50.0% | |
| !! | GTGGTGGGTGTAGCAGATCT+TGG | + | chr1_4:5174948-5174967 | Msa0145480:CDS | 55.0% |
| GTGGTCCTAAAAGGTCCTGG+TGG | + | chr1_4:5175866-5175885 | Msa0145480:CDS | 55.0% | |
| AAGGTCCTGGTGGAGTGACA+TGG | + | chr1_4:5175876-5175895 | Msa0145480:CDS | 55.0% | |
| GCCCAAACTGAACAAGGTGG+TGG | + | chr1_4:5176109-5176128 | Msa0145480:CDS | 55.0% | |
| TGTTATGTGAACCGCCTGGC+AGG | + | chr1_4:5177020-5177039 | Msa0145480:intron | 55.0% | |
| ! | TGCGTCTTTGGAGAGCCCTT+TGG | - | chr1_4:5177412-5177431 | None:intergenic | 55.0% |
| AAAGGGCTCTCCAAAGACGC+AGG | + | chr1_4:5177411-5177430 | Msa0145480:CDS | 55.0% | |
| ATGGAGGACTTACTGGTGGG+TGG | + | chr1_4:5177854-5177873 | Msa0145480:CDS | 55.0% | |
| GGAGAATGCACCGCAGTAAG+AGG | - | chr1_4:5178003-5178022 | None:intergenic | 55.0% | |
| CTTACTGCGGTGCATTCTCC+AGG | + | chr1_4:5178003-5178022 | Msa0145480:CDS | 55.0% | |
| CTCAAGCCCCTCTTCTTTCC+TGG | - | chr1_4:5178024-5178043 | None:intergenic | 55.0% | |
| CAGTTCTGTTTGGGCAGCAC+CGG | - | chr1_4:5178085-5178104 | None:intergenic | 55.0% | |
| TGCTGCCCAAACAGAACTGG+AGG | + | chr1_4:5178086-5178105 | Msa0145480:CDS | 55.0% | |
| TTCAGTTTGGGCGGCAGCCT+CGG | - | chr1_4:5176101-5176120 | None:intergenic | 60.0% | |
| GCTGCCGCCCAAACTGAACA+AGG | + | chr1_4:5176103-5176122 | Msa0145480:CDS | 60.0% | |
| GCCGCCCAAACTGAACAAGG+TGG | + | chr1_4:5176106-5176125 | Msa0145480:CDS | 60.0% | |
| GAAGTCACGCGTGTCAGGGT+CGG | - | chr1_4:5177194-5177213 | None:intergenic | 60.0% | |
| ! | AGAGCCCTTTGGAGACGCTG+GGG | - | chr1_4:5177401-5177420 | None:intergenic | 60.0% |
| ! | GAGAGCCCTTTGGAGACGCT+GGG | - | chr1_4:5177402-5177421 | None:intergenic | 60.0% |
| !! | CGGTGCTGCCCAAACAGAAC+TGG | + | chr1_4:5178083-5178102 | Msa0145480:CDS | 60.0% |
| TCGGAAATGTGGGCACGCCG+AGG | + | chr1_4:5176081-5176100 | Msa0145480:CDS | 65.0% | |
| ACCTGCCCCAGCGTCTCCAA+AGG | + | chr1_4:5177393-5177412 | Msa0145480:CDS | 65.0% | |
| CCTGCCCCAGCGTCTCCAAA+GGG | + | chr1_4:5177394-5177413 | Msa0145480:CDS | 65.0% | |
| ! | GGAGAGCCCTTTGGAGACGC+TGG | - | chr1_4:5177403-5177422 | None:intergenic | 65.0% |
| GGCTCAGGCAGCATGTACCG+AGG | + | chr1_4:5177495-5177514 | Msa0145480:CDS | 65.0% | |
| ! | CCCTTTGGAGACGCTGGGGC+AGG | - | chr1_4:5177397-5177416 | None:intergenic | 70.0% |
| CGCGTGTCAGGGTCGGACCC+TGG | - | chr1_4:5177187-5177206 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 5174703 | 5178449 | 5174703 | ID=Msa0145480;Name=Msa0145480 |
| chr1_4 | mRNA | 5174703 | 5178449 | 5174703 | ID=Msa0145480-mRNA-1;Parent=Msa0145480;Name=Msa0145480-mRNA-1;_AED=0.11;_eAED=0.11;_QI=229|1|1|1|1|1|4|324|457 |
| chr1_4 | exon | 5174703 | 5175051 | 5174703 | ID=Msa0145480-mRNA-1:exon:2114;Parent=Msa0145480-mRNA-1 |
| chr1_4 | exon | 5175815 | 5176496 | 5175815 | ID=Msa0145480-mRNA-1:exon:2115;Parent=Msa0145480-mRNA-1 |
| chr1_4 | exon | 5177386 | 5177570 | 5177386 | ID=Msa0145480-mRNA-1:exon:2116;Parent=Msa0145480-mRNA-1 |
| chr1_4 | exon | 5177739 | 5178449 | 5177739 | ID=Msa0145480-mRNA-1:exon:2117;Parent=Msa0145480-mRNA-1 |
| chr1_4 | five_prime_UTR | 5174703 | 5174931 | 5174703 | ID=Msa0145480-mRNA-1:five_prime_utr;Parent=Msa0145480-mRNA-1 |
| chr1_4 | CDS | 5174932 | 5175051 | 5174932 | ID=Msa0145480-mRNA-1:cds;Parent=Msa0145480-mRNA-1 |
| chr1_4 | CDS | 5175815 | 5176496 | 5175815 | ID=Msa0145480-mRNA-1:cds;Parent=Msa0145480-mRNA-1 |
| chr1_4 | CDS | 5177386 | 5177570 | 5177386 | ID=Msa0145480-mRNA-1:cds;Parent=Msa0145480-mRNA-1 |
| chr1_4 | CDS | 5177739 | 5178125 | 5177739 | ID=Msa0145480-mRNA-1:cds;Parent=Msa0145480-mRNA-1 |
| chr1_4 | three_prime_UTR | 5178126 | 5178449 | 5178126 | ID=Msa0145480-mRNA-1:three_prime_utr;Parent=Msa0145480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
