Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0002370 | sp|Q8RYD1|REM16_ARATH | 52.817 | 142 | 64 | 3 | 4 | 144 | 3 | 142 | 3.06e-44 | 161 |
| Msa0002370 | sp|Q8RYD1|REM16_ARATH | 36.607 | 112 | 71 | 0 | 277 | 388 | 208 | 319 | 5.64e-18 | 88.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0002370 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002370 | Msa0014990 | 0.833294 | 5.792447e-56 | -8.615850e-47 |
| Msa0002370 | Msa0051160 | 0.864087 | 1.564691e-64 | -8.615850e-47 |
| Msa0002370 | Msa0051260 | 0.852465 | 4.536171e-61 | -8.615850e-47 |
| Msa0002370 | Msa0090400 | 0.830034 | 3.686225e-55 | -8.615850e-47 |
| Msa0002370 | Msa0137880 | 0.813531 | 2.441727e-51 | -8.615850e-47 |
| Msa0002370 | Msa0145480 | 0.833478 | 5.210714e-56 | -8.615850e-47 |
| Msa0002370 | Msa0225100 | 0.804373 | 2.228965e-49 | -8.615850e-47 |
| Msa0002370 | Msa0267110 | 0.807681 | 4.488726e-50 | -8.615850e-47 |
| Msa0002370 | Msa0287740 | 0.801293 | 9.640900e-49 | -8.615850e-47 |
| Msa0002370 | Msa0520890 | 0.814975 | 1.171244e-51 | -8.615850e-47 |
| Msa0002370 | Msa0532070 | 0.804372 | 2.229317e-49 | -8.615850e-47 |
| Msa0002370 | Msa0580370 | 0.809487 | 1.847135e-50 | -8.615850e-47 |
| Msa0002370 | Msa0580700 | 0.875713 | 2.480261e-68 | -8.615850e-47 |
| Msa0002370 | Msa0700460 | 0.828035 | 1.124272e-54 | -8.615850e-47 |
| Msa0002370 | Msa0756490 | 0.804832 | 1.787329e-49 | -8.615850e-47 |
| Msa0002370 | Msa1044680 | 0.800045 | 1.732966e-48 | -8.615850e-47 |
| Msa0002370 | Msa1096960 | 0.811668 | 6.238610e-51 | -8.615850e-47 |
| Msa0002370 | Msa1105640 | 0.803132 | 4.032806e-49 | -8.615850e-47 |
| Msa0002370 | Msa1132840 | 0.809318 | 2.008020e-50 | -8.615850e-47 |
| Msa0002370 | Msa1140210 | 0.800524 | 1.383961e-48 | -8.615850e-47 |
| Msa0002370 | Msa1282260 | 0.802342 | 5.871211e-49 | -8.615850e-47 |
| Msa0002370 | Msa1321340 | 0.822249 | 2.620570e-53 | -8.615850e-47 |
| Msa0002370 | Msa1390440 | 0.801901 | 7.234242e-49 | -8.615850e-47 |
| Msa0002370 | Msa1449480 | 0.807155 | 5.802185e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0002370 | MtrunA17_Chr1g0154251 | 93.124 | 509 | 11 | 3 | 1 | 486 | 1 | 508 | 0.0 | 969 |
| Msa0002370 | MtrunA17_Chr1g0154241 | 60.377 | 265 | 84 | 5 | 7 | 271 | 2 | 245 | 2.62e-102 | 307 |
| Msa0002370 | MtrunA17_Chr1g0154211 | 48.011 | 377 | 161 | 10 | 10 | 371 | 6 | 362 | 7.56e-102 | 310 |
| Msa0002370 | MtrunA17_Chr1g0154111 | 47.268 | 366 | 158 | 11 | 10 | 370 | 9 | 344 | 1.05e-91 | 290 |
| Msa0002370 | MtrunA17_Chr1g0154111 | 47.059 | 221 | 76 | 6 | 41 | 258 | 368 | 550 | 5.59e-47 | 171 |
| Msa0002370 | MtrunA17_Chr1g0154191 | 44.935 | 385 | 147 | 11 | 7 | 371 | 2 | 341 | 1.92e-90 | 280 |
| Msa0002370 | MtrunA17_Chr1g0154101 | 41.475 | 434 | 173 | 12 | 11 | 374 | 168 | 590 | 4.58e-86 | 281 |
| Msa0002370 | MtrunA17_Chr1g0154101 | 69.942 | 173 | 44 | 3 | 6 | 177 | 4 | 169 | 3.64e-73 | 247 |
| Msa0002370 | MtrunA17_Chr1g0154131 | 43.014 | 365 | 127 | 11 | 11 | 371 | 168 | 455 | 8.35e-78 | 251 |
| Msa0002370 | MtrunA17_Chr1g0154131 | 67.045 | 176 | 49 | 2 | 2 | 177 | 3 | 169 | 1.12e-70 | 232 |
| Msa0002370 | MtrunA17_Chr1g0154171 | 41.176 | 391 | 173 | 11 | 10 | 392 | 6 | 347 | 1.51e-77 | 246 |
| Msa0002370 | MtrunA17_Chr1g0154161 | 78.873 | 142 | 24 | 3 | 4 | 144 | 8 | 144 | 3.27e-72 | 231 |
| Msa0002370 | MtrunA17_Chr1g0154071 | 39.779 | 362 | 178 | 10 | 15 | 371 | 145 | 471 | 7.82e-67 | 223 |
| Msa0002370 | MtrunA17_Chr1g0154071 | 72.059 | 136 | 38 | 0 | 2 | 137 | 3 | 138 | 1.17e-62 | 212 |
| Msa0002370 | MtrunA17_Chr1g0154151 | 35.465 | 344 | 147 | 8 | 41 | 371 | 19 | 300 | 8.39e-54 | 184 |
| Msa0002370 | MtrunA17_Chr7g0233541 | 24.646 | 353 | 186 | 11 | 42 | 388 | 2 | 280 | 1.99e-16 | 79.7 |
| Msa0002370 | MtrunA17_Chr1g0154041 | 37.255 | 102 | 63 | 1 | 26 | 127 | 15 | 115 | 5.17e-15 | 77.8 |
| Msa0002370 | MtrunA17_Chr3g0131891 | 35.484 | 93 | 59 | 1 | 25 | 116 | 17 | 109 | 1.55e-14 | 74.7 |
| Msa0002370 | MtrunA17_Chr7g0233571 | 36.957 | 92 | 57 | 1 | 26 | 116 | 9 | 100 | 9.20e-14 | 70.5 |
| Msa0002370 | MtrunA17_Chr7g0233561 | 35.870 | 92 | 58 | 1 | 25 | 115 | 16 | 107 | 1.37e-13 | 71.6 |
| Msa0002370 | MtrunA17_Chr7g0233531 | 40.000 | 75 | 45 | 0 | 42 | 116 | 2 | 76 | 2.19e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0002370 | AT4G33280.3 | 34.021 | 388 | 243 | 7 | 4 | 388 | 3 | 380 | 2.60e-68 | 224 |
| Msa0002370 | AT4G33280.2 | 48.780 | 164 | 81 | 3 | 4 | 166 | 3 | 164 | 3.51e-47 | 165 |
| Msa0002370 | AT4G33280.1 | 52.817 | 142 | 64 | 3 | 4 | 144 | 3 | 142 | 3.11e-45 | 161 |
| Msa0002370 | AT4G33280.1 | 36.607 | 112 | 71 | 0 | 277 | 388 | 208 | 319 | 5.73e-19 | 88.6 |
| Msa0002370 | AT3G18990.1 | 25.138 | 362 | 227 | 12 | 38 | 393 | 18 | 341 | 2.32e-22 | 98.6 |
| Msa0002370 | AT4G34400.2 | 31.293 | 147 | 94 | 2 | 27 | 173 | 17 | 156 | 1.81e-18 | 87.8 |
| Msa0002370 | AT4G34400.1 | 31.293 | 147 | 94 | 2 | 27 | 173 | 17 | 156 | 1.81e-18 | 87.8 |
| Msa0002370 | AT3G06160.5 | 29.126 | 206 | 106 | 7 | 27 | 229 | 11 | 179 | 3.39e-16 | 79.7 |
| Msa0002370 | AT3G06160.4 | 29.126 | 206 | 106 | 7 | 27 | 229 | 11 | 179 | 3.39e-16 | 79.7 |
| Msa0002370 | AT3G06160.3 | 29.126 | 206 | 106 | 7 | 27 | 229 | 11 | 179 | 3.39e-16 | 79.7 |
| Msa0002370 | AT3G06160.1 | 28.155 | 206 | 108 | 6 | 27 | 229 | 26 | 194 | 4.22e-16 | 79.7 |
| Msa0002370 | AT3G06160.2 | 27.885 | 208 | 110 | 7 | 27 | 231 | 70 | 240 | 5.16e-16 | 80.1 |
| Msa0002370 | AT3G06220.1 | 33.000 | 100 | 65 | 2 | 27 | 126 | 11 | 108 | 2.50e-14 | 71.6 |
| Msa0002370 | AT3G53310.1 | 37.500 | 80 | 50 | 0 | 37 | 116 | 21 | 100 | 2.59e-12 | 67.8 |
| Msa0002370 | AT5G57720.1 | 35.955 | 89 | 56 | 1 | 27 | 114 | 13 | 101 | 3.95e-11 | 64.3 |
Find 139 sgRNAs with CRISPR-Local
Find 286 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTTTAGTATCCACTTATT+AGG | 0.155011 | 1_1:+4256459 | None:intergenic |
| CACATAATCCTTGAGGTATT+TGG | 0.165984 | 1_1:+4255025 | None:intergenic |
| ATACAAAATTCATAATAATT+TGG | 0.185311 | 1_1:-4254756 | Msa0002370:three_prime_UTR |
| AATATATCCTCTAAAGAATT+TGG | 0.199831 | 1_1:+4254891 | None:intergenic |
| CAATGGCCTCCAGTTCTGTT+TGG | 0.239462 | 1_1:+4256112 | None:intergenic |
| CTTGGGAAGAAGACATTTAT+TGG | 0.243378 | 1_1:-4259247 | Msa0002370:CDS |
| TTTACTGCTTTGTATTCTTA+TGG | 0.247999 | 1_1:-4254785 | Msa0002370:three_prime_UTR |
| TGAAATGAATGAATTGAAAA+TGG | 0.249343 | 1_1:+4259222 | None:intergenic |
| GACATTGTTTGAAAATGTTT+TGG | 0.262691 | 1_1:+4258381 | None:intergenic |
| TGAAATGGGAAAAGAGTTAA+AGG | 0.276728 | 1_1:+4259336 | None:intergenic |
| AGCAGAATCAGATATGAATT+AGG | 0.282702 | 1_1:+4259308 | None:intergenic |
| GTATATAGTTCCTGCGTCTT+TGG | 0.290182 | 1_1:+4256783 | None:intergenic |
| ATGAATTAGGGTTTATGAAA+TGG | 0.297100 | 1_1:+4259321 | None:intergenic |
| CTCAAGCCCCTCTTCTTTCC+TGG | 0.311310 | 1_1:+4256183 | None:intergenic |
| ATCCACCACCTTGTTCAGTT+TGG | 0.318706 | 1_1:+4258092 | None:intergenic |
| TGTGACAGGCCTTCTATTTG+AGG | 0.325138 | 1_1:+4256761 | None:intergenic |
| CGTAACAATGGAGGACTTAC+TGG | 0.329858 | 1_1:-4256357 | Msa0002370:CDS |
| AATGGCCTCCAGTTCTGTTT+GGG | 0.333107 | 1_1:+4256113 | None:intergenic |
| GGTTTAGTATCCACTTATTA+GGG | 0.333478 | 1_1:+4256460 | None:intergenic |
| GTATTATCCAAATTCTTTAG+AGG | 0.338668 | 1_1:-4254898 | Msa0002370:three_prime_UTR |
| TCCACCACCTTGTTCAGTTT+GGG | 0.342784 | 1_1:+4258093 | None:intergenic |
| GCAGAATCAGATATGAATTA+GGG | 0.355464 | 1_1:+4259309 | None:intergenic |
| TTGTCCGTTTACCAGTTGTT+TGG | 0.357600 | 1_1:+4257828 | None:intergenic |
| TGAATTAGGGTTTATGAAAT+GGG | 0.358225 | 1_1:+4259322 | None:intergenic |
| CCTGAAAATGTGGTCCTAAA+AGG | 0.366161 | 1_1:-4258346 | Msa0002370:CDS |
| TTCAGTTTGGGCGGCAGCCT+CGG | 0.376086 | 1_1:+4258105 | None:intergenic |
| TGTCCGTTTACCAGTTGTTT+GGG | 0.377248 | 1_1:+4257829 | None:intergenic |
| ATATCTGATTCTGCTTCAAA+TGG | 0.377259 | 1_1:-4259300 | Msa0002370:exon |
| GGTGGAGTGACATGGAATAT+AGG | 0.380908 | 1_1:-4258319 | Msa0002370:CDS |
| TGCGTCTTTGGAGAGCCCTT+TGG | 0.384532 | 1_1:+4256795 | None:intergenic |
| GTACCTTCTGAAACTACTAA+TGG | 0.385556 | 1_1:-4257944 | Msa0002370:CDS |
| CACCGTTGTACTTAAAGAAC+AGG | 0.391008 | 1_1:+4258212 | None:intergenic |
| GGAGAGCCCTTTGGAGACGC+TGG | 0.392912 | 1_1:+4256804 | None:intergenic |
| ATGAACTCTTATCTCAAATA+CGG | 0.420688 | 1_1:-4255073 | Msa0002370:CDS |
| CGGTGCTGCCCAAACAGAAC+TGG | 0.423283 | 1_1:-4256121 | Msa0002370:CDS |
| GTGGTGGGTGTAGCAGATCT+TGG | 0.425709 | 1_1:-4259265 | Msa0002370:CDS |
| TGCTTTAGTCATTAAACAAA+AGG | 0.425797 | 1_1:+4254860 | None:intergenic |
| CCCTTTGGAGACGCTGGGGC+AGG | 0.428621 | 1_1:+4256810 | None:intergenic |
| GAAGTCAATACTCCTTCTAA+TGG | 0.429462 | 1_1:-4258031 | Msa0002370:CDS |
| AACACACGTCAAACTCTTCA+AGG | 0.430454 | 1_1:+4256304 | None:intergenic |
| ACACAATTACGCACCTTCAA+TGG | 0.435249 | 1_1:+4256095 | None:intergenic |
| AACTATATACCTCAAATAGA+AGG | 0.436916 | 1_1:-4256770 | Msa0002370:CDS |
| GCATCAGACATTAATTGCTC+AGG | 0.442937 | 1_1:+4257887 | None:intergenic |
| GTGGAGTGACATGGAATATA+GGG | 0.454700 | 1_1:-4258318 | Msa0002370:CDS |
| CAATTGTTGAGCAAAATCAT+TGG | 0.454715 | 1_1:+4259184 | None:intergenic |
| CAGTTCTGTTTGGGCAGCAC+CGG | 0.454969 | 1_1:+4256122 | None:intergenic |
| AAAACCAGCTTAGATCTAGA+AGG | 0.457413 | 1_1:-4254990 | Msa0002370:CDS |
| GAGAGCCCTTTGGAGACGCT+GGG | 0.458201 | 1_1:+4256805 | None:intergenic |
| CGTCCCAAACAACTGGTAAA+CGG | 0.458610 | 1_1:-4257832 | Msa0002370:CDS |
| ACTGTTCCGTCCCAAACAAC+TGG | 0.462388 | 1_1:-4257839 | Msa0002370:CDS |
| CCTTCATCAACACCATTAGA+AGG | 0.467182 | 1_1:+4258019 | None:intergenic |
| AAGAGGGGCTTGAGTTCTAC+AGG | 0.469641 | 1_1:-4256174 | Msa0002370:CDS |
| GGAGAATGCACCGCAGTAAG+AGG | 0.480989 | 1_1:+4256204 | None:intergenic |
| AGGAGCTGAGACAGACGAGC+AGG | 0.482943 | 1_1:-4255114 | Msa0002370:CDS |
| ACAGACGCAACAGCATAAAC+AGG | 0.486042 | 1_1:+4257800 | None:intergenic |
| ACAGAACTGGAGGCCATTGA+AGG | 0.495326 | 1_1:-4256108 | Msa0002370:intron |
| TACGCATGGGTAAGAATGAA+TGG | 0.495657 | 1_1:-4256407 | Msa0002370:CDS |
| CTTACTGCGGTGCATTCTCC+AGG | 0.496763 | 1_1:-4256201 | Msa0002370:CDS |
| TGGGTAAGAATGAATGGCTT+GGG | 0.497908 | 1_1:-4256401 | Msa0002370:CDS |
| ATGGGTAAGAATGAATGGCT+TGG | 0.510570 | 1_1:-4256402 | Msa0002370:CDS |
| TATCTGATTCTGCTTCAAAT+GGG | 0.511947 | 1_1:-4259299 | Msa0002370:exon |
| GTTTGGGACGGAACAGTTGT+TGG | 0.513367 | 1_1:+4257845 | None:intergenic |
| ACCTGCCCCAGCGTCTCCAA+AGG | 0.514129 | 1_1:-4256811 | Msa0002370:CDS |
| ATACAAAGCAGTAAAATAGC+AGG | 0.514813 | 1_1:+4254793 | None:intergenic |
| GAAATGAATGAATTGAAAAT+GGG | 0.517659 | 1_1:+4259223 | None:intergenic |
| CCTTCTAATGGTGTTGATGA+AGG | 0.519085 | 1_1:-4258019 | Msa0002370:CDS |
| ACTAGTCATTCCCTAATAAG+TGG | 0.519210 | 1_1:-4256470 | Msa0002370:intron |
| GTTTCAGAAGGTACAGCAAA+TGG | 0.520424 | 1_1:+4257953 | None:intergenic |
| CTTCAAATGGGATTACAAAA+CGG | 0.520715 | 1_1:-4259287 | Msa0002370:exon |
| CTAGCTGAGTCGTCACCAAT+GGG | 0.523444 | 1_1:-4254959 | Msa0002370:exon |
| GGTGCCTTCTAGATCTAAGC+TGG | 0.524684 | 1_1:+4254986 | None:intergenic |
| TGGTGGGTGTAGCAGATCTT+GGG | 0.526446 | 1_1:-4259264 | Msa0002370:CDS |
| CAACGGTGAATCGTTGTTTG+AGG | 0.529531 | 1_1:-4258197 | Msa0002370:CDS |
| ATATTCCATGTCACTCCACC+AGG | 0.530935 | 1_1:+4258322 | None:intergenic |
| GCTAGCTGAGTCGTCACCAA+TGG | 0.533102 | 1_1:-4254960 | Msa0002370:exon |
| ATGGGATTACAAAACGGTGG+TGG | 0.534211 | 1_1:-4259281 | Msa0002370:CDS |
| CCTGCCCCAGCGTCTCCAAA+GGG | 0.534279 | 1_1:-4256810 | Msa0002370:CDS |
| CAAATACCTCAAGGATTATG+TGG | 0.537700 | 1_1:-4255024 | Msa0002370:CDS |
| TCTTAGTACGTAATTCCCAT+TGG | 0.539388 | 1_1:+4254944 | None:intergenic |
| ATGTCATGCAAATGACCAGC+TGG | 0.547589 | 1_1:+4256273 | None:intergenic |
| ATGGAGGACTTACTGGTGGT+TGG | 0.548078 | 1_1:-4256350 | Msa0002370:CDS |
| TCAAGATGTGATATTACGCA+TGG | 0.548312 | 1_1:-4256421 | Msa0002370:CDS |
| CATCAGACATTAATTGCTCA+GGG | 0.548758 | 1_1:+4257888 | None:intergenic |
| CGTTTACCAGTTGTTTGGGA+CGG | 0.549463 | 1_1:+4257833 | None:intergenic |
| TTTGTTTAATGACTAAAGCA+TGG | 0.553197 | 1_1:-4254857 | Msa0002370:three_prime_UTR |
| TGGCGAGAGTTTCTGTGAGA+AGG | 0.555646 | 1_1:-4258161 | Msa0002370:CDS |
| AAGGTCCTGGTGGAGTGACA+TGG | 0.566287 | 1_1:-4258327 | Msa0002370:CDS |
| TGTATACAAGAGATTCTTCG+TGG | 0.566958 | 1_1:-4256655 | Msa0002370:intron |
| AGTCGTTCTCTTTCAAAGAG+TGG | 0.570224 | 1_1:+4258236 | None:intergenic |
| AATCTCTTGTATACATGTGA+AGG | 0.571018 | 1_1:+4256663 | None:intergenic |
| CTTGAGACGATGGAGCAAGA+TGG | 0.572879 | 1_1:+4256439 | None:intergenic |
| TTTCCATTAGTAGTTTCAGA+AGG | 0.573429 | 1_1:+4257941 | None:intergenic |
| GAGTTCTACAGGAAAGAAGA+GGG | 0.574907 | 1_1:-4256163 | Msa0002370:CDS |
| AAAGAAGCTGCCTGAAAATG+TGG | 0.583717 | 1_1:-4258356 | Msa0002370:CDS |
| GTGTGTTTGTTCAAACCAGC+TGG | 0.583771 | 1_1:-4256288 | Msa0002370:CDS |
| GCTGCCGCCCAAACTGAACA+AGG | 0.584723 | 1_1:-4258100 | Msa0002370:CDS |
| GCATTCTCCAGGAAAGAAGA+GGG | 0.592388 | 1_1:-4256190 | Msa0002370:CDS |
| TTCCTGTTCTTTAAGTACAA+CGG | 0.596255 | 1_1:-4258214 | Msa0002370:CDS |
| AAAATCATCCAAATACCTCA+AGG | 0.596480 | 1_1:-4255033 | Msa0002370:CDS |
| TGAACTCTTATCTCAAATAC+GGG | 0.597831 | 1_1:-4255072 | Msa0002370:CDS |
| AAACAACTGGTAAACGGACA+AGG | 0.598332 | 1_1:-4257826 | Msa0002370:CDS |
| TGCATTCTCCAGGAAAGAAG+AGG | 0.603183 | 1_1:-4256191 | Msa0002370:CDS |
| TGCTGCCCAAACAGAACTGG+AGG | 0.604957 | 1_1:-4256118 | Msa0002370:CDS |
| AGTTACAAGCAAGCTCTCCT+CGG | 0.605075 | 1_1:+4256692 | None:intergenic |
| AAGGTACAGCAAATGGCACT+CGG | 0.606956 | 1_1:+4257960 | None:intergenic |
| CATAATATTCGTAACAATGG+AGG | 0.607755 | 1_1:-4256366 | Msa0002370:CDS |
| AGGTGGTGGATGTTCTAGCA+AGG | 0.607880 | 1_1:-4258080 | Msa0002370:CDS |
| GCCCAAACTGAACAAGGTGG+TGG | 0.609494 | 1_1:-4258094 | Msa0002370:CDS |
| AATGTGGTCCTAAAAGGTCC+TGG | 0.611828 | 1_1:-4258340 | Msa0002370:CDS |
| GTGGATGTTCTAGCAAGGGA+AGG | 0.613993 | 1_1:-4258075 | Msa0002370:CDS |
| TGAGTTCTACAGGAAAGAAG+AGG | 0.614505 | 1_1:-4256164 | Msa0002370:CDS |
| TGGGATTACAAAACGGTGGT+GGG | 0.615464 | 1_1:-4259280 | Msa0002370:CDS |
| TATCATAATATTCGTAACAA+TGG | 0.617731 | 1_1:-4256369 | Msa0002370:CDS |
| ACCACCTTGTTCAGTTTGGG+CGG | 0.621987 | 1_1:+4258096 | None:intergenic |
| GGTGGTGGATGTTCTAGCAA+GGG | 0.623883 | 1_1:-4258079 | Msa0002370:CDS |
| AAAGGGCTCTCCAAAGACGC+AGG | 0.627367 | 1_1:-4256793 | Msa0002370:CDS |
| CAAGATGTGATATTACGCAT+GGG | 0.629761 | 1_1:-4256420 | Msa0002370:CDS |
| AGACATTAATTGCTCAGGGG+TGG | 0.633255 | 1_1:+4257892 | None:intergenic |
| AATATCACATCTTGAGACGA+TGG | 0.639490 | 1_1:+4256429 | None:intergenic |
| GGAGATTACTCCTCTTACTG+CGG | 0.639926 | 1_1:-4256214 | Msa0002370:CDS |
| AGAGCCCTTTGGAGACGCTG+GGG | 0.640012 | 1_1:+4256806 | None:intergenic |
| TCGGAAATGTGGGCACGCCG+AGG | 0.642864 | 1_1:-4258122 | Msa0002370:CDS |
| CGAGAGTTTCTGTGAGAAGG+CGG | 0.644557 | 1_1:-4258158 | Msa0002370:CDS |
| GGAGTTAAGAGAACACTGAC+CGG | 0.646401 | 1_1:-4256141 | Msa0002370:CDS |
| TGGATGTTCTAGCAAGGGAA+GGG | 0.650202 | 1_1:-4258074 | Msa0002370:CDS |
| AAGGGACACAAACAATTCTG+TGG | 0.651587 | 1_1:-4258056 | Msa0002370:CDS |
| GGAGCTGAGACAGACGAGCA+GGG | 0.652803 | 1_1:-4255113 | Msa0002370:CDS |
| TTGGTACCACATAATCCTTG+AGG | 0.659780 | 1_1:+4255018 | None:intergenic |
| GGCTCAGGCAGCATGTACCG+AGG | 0.663486 | 1_1:-4256709 | Msa0002370:CDS |
| GTGGTCCTAAAAGGTCCTGG+TGG | 0.664078 | 1_1:-4258337 | Msa0002370:CDS |
| ATAGGGCTGACAAGTAGAGA+CGG | 0.678435 | 1_1:-4258301 | Msa0002370:CDS |
| AACAATGGAGGACTTACTGG+TGG | 0.686037 | 1_1:-4256354 | Msa0002370:CDS |
| AGTTCTACAGGAAAGAAGAG+GGG | 0.697073 | 1_1:-4256162 | Msa0002370:CDS |
| CAAATGGGATTACAAAACGG+TGG | 0.705155 | 1_1:-4259284 | Msa0002370:CDS |
| CATTCTCCAGGAAAGAAGAG+GGG | 0.708428 | 1_1:-4256189 | Msa0002370:CDS |
| GGTGACGACTCAGCTAGCAG+AGG | 0.724066 | 1_1:+4254965 | None:intergenic |
| GCCGCCCAAACTGAACAAGG+TGG | 0.731431 | 1_1:-4258097 | Msa0002370:CDS |
| ATCAGACATTAATTGCTCAG+GGG | 0.741591 | 1_1:+4257889 | None:intergenic |
| CAACTGGTAAACGGACAAGG+AGG | 0.752519 | 1_1:-4257823 | Msa0002370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAATAAAAATAATCATAAT+TGG | - | chr1_1:4256985-4257004 | Msa0002370:intron | 10.0% |
| !!! | TATTAATTTTATAATAACCT+CGG | + | chr1_1:4258853-4258872 | None:intergenic | 10.0% |
| !!! | TTAATTGTACATTATTTTTA+TGG | - | chr1_1:4259109-4259128 | Msa0002370:intron | 10.0% |
| !! | ATACAAAATTCATAATAATT+TGG | - | chr1_1:4259494-4259513 | Msa0002370:five_prime_UTR | 10.0% |
| !!! | TTATTTTGATTTTGAATAAC+CGG | - | chr1_1:4256796-4256815 | Msa0002370:CDS | 15.0% |
| !! | AAGTTAAAAAAGTAAAGTAA+GGG | + | chr1_1:4257634-4257653 | None:intergenic | 15.0% |
| !! | ATAAAAAAAAAAACACAATG+AGG | + | chr1_1:4257691-4257710 | None:intergenic | 15.0% |
| !! | TATAATAAAGTTAAAAATGC+AGG | + | chr1_1:4257724-4257743 | None:intergenic | 15.0% |
| !!! | ATGAATAATTTTATTACATG+AGG | + | chr1_1:4259025-4259044 | None:intergenic | 15.0% |
| !! | GAAATGAATGAATTGAAAAT+GGG | + | chr1_1:4255030-4255049 | None:intergenic | 20.0% |
| !! | TGAAATGAATGAATTGAAAA+TGG | + | chr1_1:4255031-4255050 | None:intergenic | 20.0% |
| !!! | GTCTTTTTAAATAATGTTGT+AGG | - | chr1_1:4255430-4255449 | Msa0002370:intron | 20.0% |
| !!! | AGTTAGTATTAATTGACTTT+AGG | - | chr1_1:4255760-4255779 | Msa0002370:intron | 20.0% |
| !!! | ACATTGTTTGAAAATGTTTT+GGG | + | chr1_1:4255871-4255890 | None:intergenic | 20.0% |
| !!! | TTTGAGGTTTTAATATTTGA+TGG | - | chr1_1:4256069-4256088 | Msa0002370:intron | 20.0% |
| !! | AATCTCTCATTACTAAAATT+TGG | + | chr1_1:4257014-4257033 | None:intergenic | 20.0% |
| !!! | TTTTAGTAATGAGAGATTTT+TGG | - | chr1_1:4257016-4257035 | Msa0002370:intron | 20.0% |
| !!! | TTTAGTAATGAGAGATTTTT+GGG | - | chr1_1:4257017-4257036 | Msa0002370:intron | 20.0% |
| !! | CAAGTTAAAAAAGTAAAGTA+AGG | + | chr1_1:4257635-4257654 | None:intergenic | 20.0% |
| !! | TATCATAATATTCGTAACAA+TGG | - | chr1_1:4257881-4257900 | Msa0002370:CDS | 20.0% |
| !!! | TCAGTTTTGCAAAATAATTA+GGG | + | chr1_1:4258401-4258420 | None:intergenic | 20.0% |
| !!! | TTCAGTTTTGCAAAATAATT+AGG | + | chr1_1:4258402-4258421 | None:intergenic | 20.0% |
| !! | AACTAAAATCATGTAAAACA+AGG | - | chr1_1:4258740-4258759 | Msa0002370:intron | 20.0% |
| !!! | TACATTATTTTTATGGATCA+AGG | - | chr1_1:4259116-4259135 | Msa0002370:intron | 20.0% |
| !!! | TGATTTTACTATGTTTCTTT+TGG | + | chr1_1:4259204-4259223 | None:intergenic | 20.0% |
| !!! | AATATATCCTCTAAAGAATT+TGG | + | chr1_1:4259362-4259381 | None:intergenic | 20.0% |
| ! | TGAATTAGGGTTTATGAAAT+GGG | + | chr1_1:4254931-4254950 | None:intergenic | 25.0% |
| ! | ATGAATTAGGGTTTATGAAA+TGG | + | chr1_1:4254932-4254951 | None:intergenic | 25.0% |
| ! | TTTGCAAAAAGTTTGATCTT+TGG | - | chr1_1:4255332-4255351 | Msa0002370:intron | 25.0% |
| !!! | TGTTCAAGTTTTTTGATGAA+AGG | - | chr1_1:4255364-4255383 | Msa0002370:intron | 25.0% |
| !! | GAACTATGCATTTACATTTT+AGG | - | chr1_1:4255531-4255550 | Msa0002370:intron | 25.0% |
| ! | GTCATACTTGATATTATGAA+TGG | - | chr1_1:4255642-4255661 | Msa0002370:intron | 25.0% |
| !!! | GAAGTTTATATTTTGTTTGC+AGG | - | chr1_1:4255840-4255859 | Msa0002370:intron | 25.0% |
| !! | GACATTGTTTGAAAATGTTT+TGG | + | chr1_1:4255872-4255891 | None:intergenic | 25.0% |
| ! | AAAGAAACATTTAACACTTG+TGG | - | chr1_1:4256572-4256591 | Msa0002370:intron | 25.0% |
| !!! | GTGACATTTGTTGTTTATAA+TGG | + | chr1_1:4256698-4256717 | None:intergenic | 25.0% |
| ! | AGTTACATGAAATTGGAATT+TGG | + | chr1_1:4256838-4256857 | None:intergenic | 25.0% |
| ! | CCTATATAGTTACATGAAAT+TGG | + | chr1_1:4256845-4256864 | None:intergenic | 25.0% |
| ! | CCAATTTCATGTAACTATAT+AGG | - | chr1_1:4256842-4256861 | Msa0002370:intron | 25.0% |
| !!! | GATATTCCATCATTACTTTT+TGG | - | chr1_1:4256907-4256926 | Msa0002370:intron | 25.0% |
| ! | AACTATATACCTCAAATAGA+AGG | - | chr1_1:4257480-4257499 | Msa0002370:intron | 25.0% |
| ! | TATATGTTAACAGTTGTGTT+AGG | - | chr1_1:4258215-4258234 | Msa0002370:CDS | 25.0% |
| !! | ATATCGTTTTATGTCTGTTT+TGG | - | chr1_1:4258258-4258277 | Msa0002370:CDS | 25.0% |
| ! | TTACACATAGTTAATTACCT+AGG | + | chr1_1:4258321-4258340 | None:intergenic | 25.0% |
| ! | TGTAAATACTGCATTACAAA+TGG | + | chr1_1:4258595-4258614 | None:intergenic | 25.0% |
| ! | ATGAACTCTTATCTCAAATA+CGG | - | chr1_1:4259177-4259196 | Msa0002370:intron | 25.0% |
| ! | GTATTATCCAAATTCTTTAG+AGG | - | chr1_1:4259352-4259371 | Msa0002370:five_prime_UTR | 25.0% |
| ! | TGCTTTAGTCATTAAACAAA+AGG | + | chr1_1:4259393-4259412 | None:intergenic | 25.0% |
| ! | TTTGTTTAATGACTAAAGCA+TGG | - | chr1_1:4259393-4259412 | Msa0002370:five_prime_UTR | 25.0% |
| ! | TTTACTGCTTTGTATTCTTA+TGG | - | chr1_1:4259465-4259484 | Msa0002370:five_prime_UTR | 25.0% |
| ! | GTACAAAGAAGCAATTTTTG+TGG | + | chr1_1:4254810-4254829 | None:intergenic | 30.0% |
| !!! | TACTGCTTTTTTCTGATTCT+AGG | - | chr1_1:4254827-4254846 | Msa0002370:three_prime_UTR | 30.0% |
| !!! | ACTGCTTTTTTCTGATTCTA+GGG | - | chr1_1:4254828-4254847 | Msa0002370:three_prime_UTR | 30.0% |
| TGAAATGGGAAAAGAGTTAA+AGG | + | chr1_1:4254917-4254936 | None:intergenic | 30.0% | |
| GCAGAATCAGATATGAATTA+GGG | + | chr1_1:4254944-4254963 | None:intergenic | 30.0% | |
| AGCAGAATCAGATATGAATT+AGG | + | chr1_1:4254945-4254964 | None:intergenic | 30.0% | |
| ATATCTGATTCTGCTTCAAA+TGG | - | chr1_1:4254950-4254969 | Msa0002370:three_prime_UTR | 30.0% | |
| TATCTGATTCTGCTTCAAAT+GGG | - | chr1_1:4254951-4254970 | Msa0002370:three_prime_UTR | 30.0% | |
| CTTCAAATGGGATTACAAAA+CGG | - | chr1_1:4254963-4254982 | Msa0002370:exon | 30.0% | |
| CAATTGTTGAGCAAAATCAT+TGG | + | chr1_1:4255069-4255088 | None:intergenic | 30.0% | |
| ! | CAATGATTTTGCTCAACAAT+TGG | - | chr1_1:4255067-4255086 | Msa0002370:CDS | 30.0% |
| AAATTTCATCACTTTCAGAG+GGG | + | chr1_1:4255169-4255188 | None:intergenic | 30.0% | |
| CAAATTTCATCACTTTCAGA+GGG | + | chr1_1:4255170-4255189 | None:intergenic | 30.0% | |
| ! | CTCTGAAAGTGATGAAATTT+GGG | - | chr1_1:4255169-4255188 | Msa0002370:intron | 30.0% |
| TGATTTATGTGGTTGATCTT+GGG | - | chr1_1:4255591-4255610 | Msa0002370:intron | 30.0% | |
| !!! | ATGAATGGCTGTTTTTGAAT+CGG | - | chr1_1:4255657-4255676 | Msa0002370:intron | 30.0% |
| TTAGGCATTTAGTCTACTAA+TGG | - | chr1_1:4255778-4255797 | Msa0002370:intron | 30.0% | |
| TTCCTGTTCTTTAAGTACAA+CGG | - | chr1_1:4256036-4256055 | Msa0002370:intron | 30.0% | |
| !!! | CTTATTTTGTTCGGAAATGT+GGG | - | chr1_1:4256118-4256137 | Msa0002370:CDS | 30.0% |
| TTTCCATTAGTAGTTTCAGA+AGG | + | chr1_1:4256312-4256331 | None:intergenic | 30.0% | |
| ! | TTTTTACTTGTGAATGACGA+CGG | - | chr1_1:4256549-4256568 | Msa0002370:intron | 30.0% |
| TTTAACACTTGTGGTAAAAG+CGG | - | chr1_1:4256581-4256600 | Msa0002370:intron | 30.0% | |
| GTCTTAACTATTGCATTCAT+TGG | + | chr1_1:4256657-4256676 | None:intergenic | 30.0% | |
| !! | TTGTTGTTTATAATGGTCCA+CGG | + | chr1_1:4256691-4256710 | None:intergenic | 30.0% |
| ! | AATAACCGGAACATTTTCAA+AGG | - | chr1_1:4256810-4256829 | Msa0002370:CDS | 30.0% |
| ! | ATAACCGGAACATTTTCAAA+GGG | - | chr1_1:4256811-4256830 | Msa0002370:CDS | 30.0% |
| CATGTAACTATATAGGTGAT+AGG | - | chr1_1:4256849-4256868 | Msa0002370:intron | 30.0% | |
| CACTCATTCATTCAAACATT+CGG | + | chr1_1:4256887-4256906 | None:intergenic | 30.0% | |
| ! | TGTGGTCTAGAATTAAATTG+AGG | + | chr1_1:4256936-4256955 | None:intergenic | 30.0% |
| CTCTCATTACTAAAATTTGG+TGG | + | chr1_1:4257011-4257030 | None:intergenic | 30.0% | |
| TGAGATTGAAAAAACTCTTC+AGG | - | chr1_1:4257517-4257536 | Msa0002370:intron | 30.0% | |
| AATCTCTTGTATACATGTGA+AGG | + | chr1_1:4257590-4257609 | None:intergenic | 30.0% | |
| GGTTTAGTATCCACTTATTA+GGG | + | chr1_1:4257793-4257812 | None:intergenic | 30.0% | |
| TGGTTTAGTATCCACTTATT+AGG | + | chr1_1:4257794-4257813 | None:intergenic | 30.0% | |
| CATAATATTCGTAACAATGG+AGG | - | chr1_1:4257884-4257903 | Msa0002370:CDS | 30.0% | |
| ! | GTTTTGCAAAATAATTAGGG+TGG | + | chr1_1:4258398-4258417 | None:intergenic | 30.0% |
| GCTGACATGAATTTCTTTAT+TGG | - | chr1_1:4258770-4258789 | Msa0002370:intron | 30.0% | |
| TATGCATTTAGTAGTGTGTT+AGG | - | chr1_1:4258871-4258890 | Msa0002370:intron | 30.0% | |
| AAACATTAAAAACAGCCGTT+TGG | - | chr1_1:4258904-4258923 | Msa0002370:intron | 30.0% | |
| CTGTTATCCCAATTAAATAG+AGG | - | chr1_1:4258964-4258983 | Msa0002370:intron | 30.0% | |
| TGAACTCTTATCTCAAATAC+GGG | - | chr1_1:4259178-4259197 | Msa0002370:intron | 30.0% | |
| AAAATCATCCAAATACCTCA+AGG | - | chr1_1:4259217-4259236 | Msa0002370:CDS | 30.0% | |
| ATACAAAGCAGTAAAATAGC+AGG | + | chr1_1:4259460-4259479 | None:intergenic | 30.0% | |
| CTTGGGAAGAAGACATTTAT+TGG | - | chr1_1:4255003-4255022 | Msa0002370:CDS | 35.0% | |
| CCAAATTTCATCACTTTCAG+AGG | + | chr1_1:4255171-4255190 | None:intergenic | 35.0% | |
| ! | CCTCTGAAAGTGATGAAATT+TGG | - | chr1_1:4255168-4255187 | Msa0002370:intron | 35.0% |
| TTTCATGCATGTGTCATGAT+AGG | - | chr1_1:4255558-4255577 | Msa0002370:intron | 35.0% | |
| TTCATGCATGTGTCATGATA+GGG | - | chr1_1:4255559-4255578 | Msa0002370:intron | 35.0% | |
| GGTCATGTTTGTGATTTATG+TGG | - | chr1_1:4255580-4255599 | Msa0002370:intron | 35.0% | |
| GTGATTTATGTGGTTGATCT+TGG | - | chr1_1:4255590-4255609 | Msa0002370:intron | 35.0% | |
| TAGTTATGATCTTCGTAACG+CGG | - | chr1_1:4255681-4255700 | Msa0002370:intron | 35.0% | |
| !!! | GCTTATTTTGTTCGGAAATG+TGG | - | chr1_1:4256117-4256136 | Msa0002370:CDS | 35.0% |
| GAAGTCAATACTCCTTCTAA+TGG | - | chr1_1:4256219-4256238 | Msa0002370:CDS | 35.0% | |
| !! | GTACCTTCTGAAACTACTAA+TGG | - | chr1_1:4256306-4256325 | Msa0002370:CDS | 35.0% |
| ATCAGACATTAATTGCTCAG+GGG | + | chr1_1:4256364-4256383 | None:intergenic | 35.0% | |
| CATCAGACATTAATTGCTCA+GGG | + | chr1_1:4256365-4256384 | None:intergenic | 35.0% | |
| TCAGGAGAAAGCTCTTAATT+GGG | - | chr1_1:4256514-4256533 | Msa0002370:intron | 35.0% | |
| CAGTAGACAGATATGTTTCT+TGG | + | chr1_1:4256720-4256739 | None:intergenic | 35.0% | |
| ! | TAACCGGAACATTTTCAAAG+GGG | - | chr1_1:4256812-4256831 | Msa0002370:CDS | 35.0% |
| ATATAGGTGATAGGCAAAAG+TGG | - | chr1_1:4256858-4256877 | Msa0002370:intron | 35.0% | |
| TATAGGTGATAGGCAAAAGT+GGG | - | chr1_1:4256859-4256878 | Msa0002370:intron | 35.0% | |
| CGAATGTTTGAATGAATGAG+TGG | - | chr1_1:4256885-4256904 | Msa0002370:intron | 35.0% | |
| AGGACTCCAAAAAGTAATGA+TGG | + | chr1_1:4256916-4256935 | None:intergenic | 35.0% | |
| CAAGTTTACTATGCTTCTTG+TGG | + | chr1_1:4256954-4256973 | None:intergenic | 35.0% | |
| !!! | AGATTTTTGGGTAGAAACAG+TGG | - | chr1_1:4257029-4257048 | Msa0002370:intron | 35.0% |
| !! | ACACTTAGCTGATGTTTTTG+TGG | - | chr1_1:4257153-4257172 | Msa0002370:intron | 35.0% |
| ! | GCAGTTTTCTCACTTATCAA+AGG | - | chr1_1:4257202-4257221 | Msa0002370:intron | 35.0% |
| ! | TCAATCTCATCTTTTGTGAC+AGG | + | chr1_1:4257506-4257525 | None:intergenic | 35.0% |
| GATTGAAAAAACTCTTCAGG+TGG | - | chr1_1:4257520-4257539 | Msa0002370:intron | 35.0% | |
| TGTATACAAGAGATTCTTCG+TGG | - | chr1_1:4257595-4257614 | Msa0002370:intron | 35.0% | |
| ACTAGTCATTCCCTAATAAG+TGG | - | chr1_1:4257780-4257799 | Msa0002370:intron | 35.0% | |
| AATATCACATCTTGAGACGA+TGG | + | chr1_1:4257824-4257843 | None:intergenic | 35.0% | |
| TCAAGATGTGATATTACGCA+TGG | - | chr1_1:4257829-4257848 | Msa0002370:CDS | 35.0% | |
| CAAGATGTGATATTACGCAT+GGG | - | chr1_1:4257830-4257849 | Msa0002370:CDS | 35.0% | |
| !!! | GAGCATTTTTAGAGTTGTTG+AGG | - | chr1_1:4258015-4258034 | Msa0002370:CDS | 35.0% |
| !! | GTCTGTTTTGGATGTTATGA+TGG | - | chr1_1:4258270-4258289 | Msa0002370:CDS | 35.0% |
| ACTTGTCTAATCTTCTACCT+AGG | - | chr1_1:4258301-4258320 | Msa0002370:CDS | 35.0% | |
| !!! | GCAGTAGCTAGACTTTTTTA+AGG | - | chr1_1:4258351-4258370 | Msa0002370:CDS | 35.0% |
| TCCATTGCTTTCTTGAAACA+TGG | - | chr1_1:4258455-4258474 | Msa0002370:intron | 35.0% | |
| TCCATGTTTCAAGAAAGCAA+TGG | + | chr1_1:4258459-4258478 | None:intergenic | 35.0% | |
| CACCTTCATATTCTCATTCA+CGG | - | chr1_1:4258482-4258501 | Msa0002370:intron | 35.0% | |
| ACCTTCATATTCTCATTCAC+GGG | - | chr1_1:4258483-4258502 | Msa0002370:intron | 35.0% | |
| TCTTTATTGGAACTCTGTGT+TGG | - | chr1_1:4258783-4258802 | Msa0002370:intron | 35.0% | |
| TAGCGTGCCTCTATTTAATT+GGG | + | chr1_1:4258974-4258993 | None:intergenic | 35.0% | |
| TTAGCGTGCCTCTATTTAAT+TGG | + | chr1_1:4258975-4258994 | None:intergenic | 35.0% | |
| ! | CACATAATCCTTGAGGTATT+TGG | + | chr1_1:4259228-4259247 | None:intergenic | 35.0% |
| CAAATACCTCAAGGATTATG+TGG | - | chr1_1:4259226-4259245 | Msa0002370:CDS | 35.0% | |
| !!! | TCTAAGCTGGTTTTCTTCTT+TGG | + | chr1_1:4259254-4259273 | None:intergenic | 35.0% |
| AAAACCAGCTTAGATCTAGA+AGG | - | chr1_1:4259260-4259279 | Msa0002370:CDS | 35.0% | |
| TCTTAGTACGTAATTCCCAT+TGG | + | chr1_1:4259309-4259328 | None:intergenic | 35.0% | |
| CAAATGGGATTACAAAACGG+TGG | - | chr1_1:4254966-4254985 | Msa0002370:exon | 40.0% | |
| AAAGAAGCTGCCTGAAAATG+TGG | - | chr1_1:4255894-4255913 | Msa0002370:intron | 40.0% | |
| !!! | CCTTTTAGGACCACATTTTC+AGG | + | chr1_1:4255907-4255926 | None:intergenic | 40.0% |
| CCTGAAAATGTGGTCCTAAA+AGG | - | chr1_1:4255904-4255923 | Msa0002370:intron | 40.0% | |
| GTGGAGTGACATGGAATATA+GGG | - | chr1_1:4255932-4255951 | Msa0002370:intron | 40.0% | |
| ! | GCACATTTTACTTCACGCAA+GGG | - | chr1_1:4255971-4255990 | Msa0002370:intron | 40.0% |
| ! | ATTTTACTTCACGCAAGGGT+GGG | - | chr1_1:4255975-4255994 | Msa0002370:intron | 40.0% |
| AGTCGTTCTCTTTCAAAGAG+TGG | + | chr1_1:4256017-4256036 | None:intergenic | 40.0% | |
| CACCGTTGTACTTAAAGAAC+AGG | + | chr1_1:4256041-4256060 | None:intergenic | 40.0% | |
| AAGGGACACAAACAATTCTG+TGG | - | chr1_1:4256194-4256213 | Msa0002370:CDS | 40.0% | |
| CCTTCATCAACACCATTAGA+AGG | + | chr1_1:4256234-4256253 | None:intergenic | 40.0% | |
| !! | CCTTCTAATGGTGTTGATGA+AGG | - | chr1_1:4256231-4256250 | Msa0002370:CDS | 40.0% |
| ! | GTTTCAGAAGGTACAGCAAA+TGG | + | chr1_1:4256300-4256319 | None:intergenic | 40.0% |
| GCATCAGACATTAATTGCTC+AGG | + | chr1_1:4256366-4256385 | None:intergenic | 40.0% | |
| TGTCCGTTTACCAGTTGTTT+GGG | + | chr1_1:4256424-4256443 | None:intergenic | 40.0% | |
| TTGTCCGTTTACCAGTTGTT+TGG | + | chr1_1:4256425-4256444 | None:intergenic | 40.0% | |
| AAACAACTGGTAAACGGACA+AGG | - | chr1_1:4256424-4256443 | Msa0002370:CDS | 40.0% | |
| CTCAGGAGAAAGCTCTTAAT+TGG | - | chr1_1:4256513-4256532 | Msa0002370:intron | 40.0% | |
| AAAGCTCTTAATTGGGTGAC+TGG | - | chr1_1:4256521-4256540 | Msa0002370:intron | 40.0% | |
| TATCAAATCAATGTCCTGCC+AGG | + | chr1_1:4257083-4257102 | None:intergenic | 40.0% | |
| TCAGCTAAGTGTCACAATGT+TGG | + | chr1_1:4257145-4257164 | None:intergenic | 40.0% | |
| ! | ACTTATCAAAGGTGTGTCCA+GGG | - | chr1_1:4257213-4257232 | Msa0002370:intron | 40.0% |
| ! | TTTTACCAGTGTCACATGTC+TGG | - | chr1_1:4257284-4257303 | Msa0002370:intron | 40.0% |
| TGTCTGTGTTGTGTTTGTGT+TGG | - | chr1_1:4257307-4257326 | Msa0002370:intron | 40.0% | |
| !! | ACATGGACTTGCTGTTAATG+TGG | - | chr1_1:4257384-4257403 | Msa0002370:intron | 40.0% |
| GTATATAGTTCCTGCGTCTT+TGG | + | chr1_1:4257470-4257489 | None:intergenic | 40.0% | |
| TACGCATGGGTAAGAATGAA+TGG | - | chr1_1:4257843-4257862 | Msa0002370:CDS | 40.0% | |
| ATGGGTAAGAATGAATGGCT+TGG | - | chr1_1:4257848-4257867 | Msa0002370:CDS | 40.0% | |
| TGGGTAAGAATGAATGGCTT+GGG | - | chr1_1:4257849-4257868 | Msa0002370:CDS | 40.0% | |
| AACACACGTCAAACTCTTCA+AGG | + | chr1_1:4257949-4257968 | None:intergenic | 40.0% | |
| TGAGTTCTACAGGAAAGAAG+AGG | - | chr1_1:4258086-4258105 | Msa0002370:CDS | 40.0% | |
| GAGTTCTACAGGAAAGAAGA+GGG | - | chr1_1:4258087-4258106 | Msa0002370:CDS | 40.0% | |
| AGTTCTACAGGAAAGAAGAG+GGG | - | chr1_1:4258088-4258107 | Msa0002370:CDS | 40.0% | |
| ACACAATTACGCACCTTCAA+TGG | + | chr1_1:4258158-4258177 | None:intergenic | 40.0% | |
| GAAAGCAATGGACAAACACT+TGG | + | chr1_1:4258447-4258466 | None:intergenic | 40.0% | |
| CGTGAATGAGAATATGAAGG+TGG | + | chr1_1:4258484-4258503 | None:intergenic | 40.0% | |
| !!! | TCTCATTCACGGGCATTTTT+TGG | - | chr1_1:4258493-4258512 | Msa0002370:intron | 40.0% |
| ! | TTAACAGAAAGAGTACACCG+AGG | - | chr1_1:4258833-4258852 | Msa0002370:intron | 40.0% |
| TTGGTACCACATAATCCTTG+AGG | + | chr1_1:4259235-4259254 | None:intergenic | 40.0% | |
| ATGGGATTACAAAACGGTGG+TGG | - | chr1_1:4254969-4254988 | Msa0002370:exon | 45.0% | |
| TGGGATTACAAAACGGTGGT+GGG | - | chr1_1:4254970-4254989 | Msa0002370:exon | 45.0% | |
| AATGTGGTCCTAAAAGGTCC+TGG | - | chr1_1:4255910-4255929 | Msa0002370:intron | 45.0% | |
| ATATTCCATGTCACTCCACC+AGG | + | chr1_1:4255931-4255950 | None:intergenic | 45.0% | |
| GGTGGAGTGACATGGAATAT+AGG | - | chr1_1:4255931-4255950 | Msa0002370:intron | 45.0% | |
| ATAGGGCTGACAAGTAGAGA+CGG | - | chr1_1:4255949-4255968 | Msa0002370:intron | 45.0% | |
| ! | GGCACATTTTACTTCACGCA+AGG | - | chr1_1:4255970-4255989 | Msa0002370:intron | 45.0% |
| ! | CATTTTACTTCACGCAAGGG+TGG | - | chr1_1:4255974-4255993 | Msa0002370:intron | 45.0% |
| CAACGGTGAATCGTTGTTTG+AGG | - | chr1_1:4256053-4256072 | Msa0002370:intron | 45.0% | |
| !!! | AGGCGGCAGCTTATTTTGTT+CGG | - | chr1_1:4256109-4256128 | Msa0002370:CDS | 45.0% |
| TCCACCACCTTGTTCAGTTT+GGG | + | chr1_1:4256160-4256179 | None:intergenic | 45.0% | |
| ATCCACCACCTTGTTCAGTT+TGG | + | chr1_1:4256161-4256180 | None:intergenic | 45.0% | |
| TGGATGTTCTAGCAAGGGAA+GGG | - | chr1_1:4256176-4256195 | Msa0002370:CDS | 45.0% | |
| AAGGTACAGCAAATGGCACT+CGG | + | chr1_1:4256293-4256312 | None:intergenic | 45.0% | |
| AGACATTAATTGCTCAGGGG+TGG | + | chr1_1:4256361-4256380 | None:intergenic | 45.0% | |
| CGTTTACCAGTTGTTTGGGA+CGG | + | chr1_1:4256420-4256439 | None:intergenic | 45.0% | |
| CGTCCCAAACAACTGGTAAA+CGG | - | chr1_1:4256418-4256437 | Msa0002370:CDS | 45.0% | |
| ACAGACGCAACAGCATAAAC+AGG | + | chr1_1:4256453-4256472 | None:intergenic | 45.0% | |
| TGAGAATTAGACGTTCGTGG+CGG | + | chr1_1:4256497-4256516 | None:intergenic | 45.0% | |
| TCCTGAGAATTAGACGTTCG+TGG | + | chr1_1:4256500-4256519 | None:intergenic | 45.0% | |
| TAAGACTATCTGCGTATCCG+TGG | - | chr1_1:4256671-4256690 | Msa0002370:CDS | 45.0% | |
| ! | TGGCCCCTTTGAAAATGTTC+CGG | + | chr1_1:4256818-4256837 | None:intergenic | 45.0% |
| !! | GATTTGTTATGTGAACCGCC+TGG | - | chr1_1:4257062-4257081 | Msa0002370:intron | 45.0% |
| ! | CACTTATCAAAGGTGTGTCC+AGG | - | chr1_1:4257212-4257231 | Msa0002370:intron | 45.0% |
| TGTGACAGGCCTTCTATTTG+AGG | + | chr1_1:4257492-4257511 | None:intergenic | 45.0% | |
| AAAAACTCTTCAGGTGGCTC+AGG | - | chr1_1:4257526-4257545 | Msa0002370:intron | 45.0% | |
| AGTTACAAGCAAGCTCTCCT+CGG | + | chr1_1:4257561-4257580 | None:intergenic | 45.0% | |
| CGTAACAATGGAGGACTTAC+TGG | - | chr1_1:4257893-4257912 | Msa0002370:CDS | 45.0% | |
| AACAATGGAGGACTTACTGG+TGG | - | chr1_1:4257896-4257915 | Msa0002370:CDS | 45.0% | |
| GTGTGTTTGTTCAAACCAGC+TGG | - | chr1_1:4257962-4257981 | Msa0002370:CDS | 45.0% | |
| ATGTCATGCAAATGACCAGC+TGG | + | chr1_1:4257980-4257999 | None:intergenic | 45.0% | |
| GGAGATTACTCCTCTTACTG+CGG | - | chr1_1:4258036-4258055 | Msa0002370:CDS | 45.0% | |
| TGCATTCTCCAGGAAAGAAG+AGG | - | chr1_1:4258059-4258078 | Msa0002370:CDS | 45.0% | |
| GCATTCTCCAGGAAAGAAGA+GGG | - | chr1_1:4258060-4258079 | Msa0002370:CDS | 45.0% | |
| CATTCTCCAGGAAAGAAGAG+GGG | - | chr1_1:4258061-4258080 | Msa0002370:CDS | 45.0% | |
| GGAGTTAAGAGAACACTGAC+CGG | - | chr1_1:4258109-4258128 | Msa0002370:CDS | 45.0% | |
| AATGGCCTCCAGTTCTGTTT+GGG | + | chr1_1:4258140-4258159 | None:intergenic | 45.0% | |
| GTCTGAGGAAGTTACGTTGT+TGG | - | chr1_1:4258179-4258198 | Msa0002370:CDS | 45.0% | |
| GCCCGTGAATGAGAATATGA+AGG | + | chr1_1:4258487-4258506 | None:intergenic | 45.0% | |
| GGAACTCTGTGTTGGACTTT+CGG | - | chr1_1:4258791-4258810 | Msa0002370:intron | 45.0% | |
| !! | TGTGTTGGACTTTCGGTGTT+AGG | - | chr1_1:4258798-4258817 | Msa0002370:intron | 45.0% |
| GAGCCATGTGAAGAACCAAA+CGG | + | chr1_1:4258922-4258941 | None:intergenic | 45.0% | |
| !! | TTATAAAAAAAAAAATTATG+TGG | + | chr1_1:4255268-4255287 | None:intergenic | 5.0% |
| !!! | TTTTTATTAAAATTAATACA+TGG | - | chr1_1:4257367-4257386 | Msa0002370:intron | 5.0% |
| !!! | ATATTTTGATTAATTAATTT+AGG | + | chr1_1:4258662-4258681 | None:intergenic | 5.0% |
| ! | TGGTGGGTGTAGCAGATCTT+GGG | - | chr1_1:4254986-4255005 | Msa0002370:CDS | 50.0% |
| ! | TGTCATGTGCGTGGTTTGTG+TGG | - | chr1_1:4255710-4255729 | Msa0002370:intron | 50.0% |
| ! | GTCATGTGCGTGGTTTGTGT+GGG | - | chr1_1:4255711-4255730 | Msa0002370:intron | 50.0% |
| ! | TGGTTTGTGTGGGTCTTCGT+AGG | - | chr1_1:4255721-4255740 | Msa0002370:intron | 50.0% |
| ! | TCACTCCACCAGGACCTTTT+AGG | + | chr1_1:4255921-4255940 | None:intergenic | 50.0% |
| TGGCGAGAGTTTCTGTGAGA+AGG | - | chr1_1:4256089-4256108 | Msa0002370:intron | 50.0% | |
| CGAGAGTTTCTGTGAGAAGG+CGG | - | chr1_1:4256092-4256111 | Msa0002370:intron | 50.0% | |
| ACCACCTTGTTCAGTTTGGG+CGG | + | chr1_1:4256157-4256176 | None:intergenic | 50.0% | |
| !! | AGGTGGTGGATGTTCTAGCA+AGG | - | chr1_1:4256170-4256189 | Msa0002370:CDS | 50.0% |
| !! | GGTGGTGGATGTTCTAGCAA+GGG | - | chr1_1:4256171-4256190 | Msa0002370:CDS | 50.0% |
| GTGGATGTTCTAGCAAGGGA+AGG | - | chr1_1:4256175-4256194 | Msa0002370:CDS | 50.0% | |
| ! | GTTTGGGACGGAACAGTTGT+TGG | + | chr1_1:4256408-4256427 | None:intergenic | 50.0% |
| ACTGTTCCGTCCCAAACAAC+TGG | - | chr1_1:4256411-4256430 | Msa0002370:CDS | 50.0% | |
| CAACTGGTAAACGGACAAGG+AGG | - | chr1_1:4256427-4256446 | Msa0002370:CDS | 50.0% | |
| TCTGTCCCGAGTAAGAAGAG+AGG | - | chr1_1:4256468-4256487 | Msa0002370:CDS | 50.0% | |
| GGTCTCCTCTCTTCTTACTC+GGG | + | chr1_1:4256476-4256495 | None:intergenic | 50.0% | |
| CGGTCTCCTCTCTTCTTACT+CGG | + | chr1_1:4256477-4256496 | None:intergenic | 50.0% | |
| GCCACGAACGTCTAATTCTC+AGG | - | chr1_1:4256496-4256515 | Msa0002370:intron | 50.0% | |
| CAAATCAATGTCCTGCCAGG+CGG | + | chr1_1:4257080-4257099 | None:intergenic | 50.0% | |
| GAATGAAGTCACGCGTGTCA+GGG | + | chr1_1:4257244-4257263 | None:intergenic | 50.0% | |
| AGAATGAAGTCACGCGTGTC+AGG | + | chr1_1:4257245-4257264 | None:intergenic | 50.0% | |
| AGACACCAGACATGTGACAC+TGG | + | chr1_1:4257292-4257311 | None:intergenic | 50.0% | |
| CTTGAGACGATGGAGCAAGA+TGG | + | chr1_1:4257814-4257833 | None:intergenic | 50.0% | |
| ATGGAGGACTTACTGGTGGT+TGG | - | chr1_1:4257900-4257919 | Msa0002370:CDS | 50.0% | |
| AAGAGGGGCTTGAGTTCTAC+AGG | - | chr1_1:4258076-4258095 | Msa0002370:CDS | 50.0% | |
| CAATGGCCTCCAGTTCTGTT+TGG | + | chr1_1:4258141-4258160 | None:intergenic | 50.0% | |
| ACAGAACTGGAGGCCATTGA+AGG | - | chr1_1:4258142-4258161 | Msa0002370:CDS | 50.0% | |
| GTGCGTAATTGTGTCGTCTG+AGG | - | chr1_1:4258164-4258183 | Msa0002370:CDS | 50.0% | |
| !! | CAGCCGTTTGGTTCTTCACA+TGG | - | chr1_1:4258916-4258935 | Msa0002370:intron | 50.0% |
| GGTGCCTTCTAGATCTAAGC+TGG | + | chr1_1:4259267-4259286 | None:intergenic | 50.0% | |
| CTAGCTGAGTCGTCACCAAT+GGG | - | chr1_1:4259291-4259310 | Msa0002370:exon | 50.0% | |
| !! | GTGGTGGGTGTAGCAGATCT+TGG | - | chr1_1:4254985-4255004 | Msa0002370:CDS | 55.0% |
| ! | CGGTGTCAATGTCATGTGCG+TGG | - | chr1_1:4255701-4255720 | Msa0002370:intron | 55.0% |
| GTGGTCCTAAAAGGTCCTGG+TGG | - | chr1_1:4255913-4255932 | Msa0002370:intron | 55.0% | |
| AAGGTCCTGGTGGAGTGACA+TGG | - | chr1_1:4255923-4255942 | Msa0002370:intron | 55.0% | |
| GCCCAAACTGAACAAGGTGG+TGG | - | chr1_1:4256156-4256175 | Msa0002370:CDS | 55.0% | |
| TGTTATGTGAACCGCCTGGC+AGG | - | chr1_1:4257066-4257085 | Msa0002370:intron | 55.0% | |
| ! | TGCGTCTTTGGAGAGCCCTT+TGG | + | chr1_1:4257458-4257477 | None:intergenic | 55.0% |
| AAAGGGCTCTCCAAAGACGC+AGG | - | chr1_1:4257457-4257476 | Msa0002370:intron | 55.0% | |
| GGAGAATGCACCGCAGTAAG+AGG | + | chr1_1:4258049-4258068 | None:intergenic | 55.0% | |
| CTTACTGCGGTGCATTCTCC+AGG | - | chr1_1:4258049-4258068 | Msa0002370:CDS | 55.0% | |
| CTCAAGCCCCTCTTCTTTCC+TGG | + | chr1_1:4258070-4258089 | None:intergenic | 55.0% | |
| CAGTTCTGTTTGGGCAGCAC+CGG | + | chr1_1:4258131-4258150 | None:intergenic | 55.0% | |
| TGCTGCCCAAACAGAACTGG+AGG | - | chr1_1:4258132-4258151 | Msa0002370:CDS | 55.0% | |
| GCTAGCTGAGTCGTCACCAA+TGG | - | chr1_1:4259290-4259309 | Msa0002370:exon | 55.0% | |
| TTCAGTTTGGGCGGCAGCCT+CGG | + | chr1_1:4256148-4256167 | None:intergenic | 60.0% | |
| GCTGCCGCCCAAACTGAACA+AGG | - | chr1_1:4256150-4256169 | Msa0002370:CDS | 60.0% | |
| GCCGCCCAAACTGAACAAGG+TGG | - | chr1_1:4256153-4256172 | Msa0002370:CDS | 60.0% | |
| GAAGTCACGCGTGTCAGGGT+CGG | + | chr1_1:4257240-4257259 | None:intergenic | 60.0% | |
| ! | AGAGCCCTTTGGAGACGCTG+GGG | + | chr1_1:4257447-4257466 | None:intergenic | 60.0% |
| ! | GAGAGCCCTTTGGAGACGCT+GGG | + | chr1_1:4257448-4257467 | None:intergenic | 60.0% |
| !! | CGGTGCTGCCCAAACAGAAC+TGG | - | chr1_1:4258129-4258148 | Msa0002370:CDS | 60.0% |
| AGGAGCTGAGACAGACGAGC+AGG | - | chr1_1:4259136-4259155 | Msa0002370:intron | 60.0% | |
| GGAGCTGAGACAGACGAGCA+GGG | - | chr1_1:4259137-4259156 | Msa0002370:intron | 60.0% | |
| GGTGACGACTCAGCTAGCAG+AGG | + | chr1_1:4259288-4259307 | None:intergenic | 60.0% | |
| TCGGAAATGTGGGCACGCCG+AGG | - | chr1_1:4256128-4256147 | Msa0002370:CDS | 65.0% | |
| ACCTGCCCCAGCGTCTCCAA+AGG | - | chr1_1:4257439-4257458 | Msa0002370:intron | 65.0% | |
| CCTGCCCCAGCGTCTCCAAA+GGG | - | chr1_1:4257440-4257459 | Msa0002370:intron | 65.0% | |
| ! | GGAGAGCCCTTTGGAGACGC+TGG | + | chr1_1:4257449-4257468 | None:intergenic | 65.0% |
| GGCTCAGGCAGCATGTACCG+AGG | - | chr1_1:4257541-4257560 | Msa0002370:intron | 65.0% | |
| ! | CCCTTTGGAGACGCTGGGGC+AGG | + | chr1_1:4257443-4257462 | None:intergenic | 70.0% |
| CGCGTGTCAGGGTCGGACCC+TGG | + | chr1_1:4257233-4257252 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 4254741 | 4259531 | 4254741 | ID=Msa0002370;Name=Msa0002370 |
| chr1_1 | mRNA | 4254741 | 4259531 | 4254741 | ID=Msa0002370-mRNA-1;Parent=Msa0002370;Name=Msa0002370-mRNA-1;_AED=0.12;_eAED=0.12;_QI=228|0.75|0.8|1|1|1|5|233|486 |
| chr1_1 | exon | 4254741 | 4255134 | 4254741 | ID=Msa0002370-mRNA-1:exon:1294;Parent=Msa0002370-mRNA-1 |
| chr1_1 | exon | 4256109 | 4256487 | 4256109 | ID=Msa0002370-mRNA-1:exon:1293;Parent=Msa0002370-mRNA-1 |
| chr1_1 | exon | 4256656 | 4256840 | 4256656 | ID=Msa0002370-mRNA-1:exon:1292;Parent=Msa0002370-mRNA-1 |
| chr1_1 | exon | 4257795 | 4258410 | 4257795 | ID=Msa0002370-mRNA-1:exon:1291;Parent=Msa0002370-mRNA-1 |
| chr1_1 | exon | 4259184 | 4259531 | 4259184 | ID=Msa0002370-mRNA-1:exon:1290;Parent=Msa0002370-mRNA-1 |
| chr1_1 | five_prime_UTR | 4259304 | 4259531 | 4259304 | ID=Msa0002370-mRNA-1:five_prime_utr;Parent=Msa0002370-mRNA-1 |
| chr1_1 | CDS | 4259184 | 4259303 | 4259184 | ID=Msa0002370-mRNA-1:cds;Parent=Msa0002370-mRNA-1 |
| chr1_1 | CDS | 4257795 | 4258410 | 4257795 | ID=Msa0002370-mRNA-1:cds;Parent=Msa0002370-mRNA-1 |
| chr1_1 | CDS | 4256656 | 4256840 | 4256656 | ID=Msa0002370-mRNA-1:cds;Parent=Msa0002370-mRNA-1 |
| chr1_1 | CDS | 4256109 | 4256487 | 4256109 | ID=Msa0002370-mRNA-1:cds;Parent=Msa0002370-mRNA-1 |
| chr1_1 | CDS | 4254974 | 4255134 | 4254974 | ID=Msa0002370-mRNA-1:cds;Parent=Msa0002370-mRNA-1 |
| chr1_1 | three_prime_UTR | 4254741 | 4254973 | 4254741 | ID=Msa0002370-mRNA-1:three_prime_utr;Parent=Msa0002370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
