Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0051890 | XP_003589168.2 | 95.522 | 268 | 10 | 2 | 1 | 267 | 1 | 267 | 7.32e-175 | 493 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0051890 | sp|Q9FUA4|SPT_ARATH | 83.562 | 73 | 12 | 0 | 90 | 162 | 196 | 268 | 5.18e-34 | 129 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0051890 | G7I3I4 | 95.522 | 268 | 10 | 2 | 1 | 267 | 1 | 267 | 3.50e-175 | 493 |
Gene ID | Type | Classification |
---|---|---|
Msa0051890 | TF | bHLH |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0051890 | Msa0096880 | 0.910215 | 2.403220e-82 | -8.615850e-47 |
Msa0051890 | Msa0144870 | 0.946452 | 4.495856e-105 | -8.615850e-47 |
Msa0051890 | Msa1441050 | 0.957690 | 1.475393e-115 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0051890 | MtrunA17_Chr1g0153241 | 95.522 | 268 | 10 | 2 | 1 | 267 | 1 | 267 | 6.73e-179 | 493 |
Msa0051890 | MtrunA17_Chr1g0153751 | 94.792 | 96 | 4 | 1 | 146 | 240 | 1 | 96 | 2.09e-60 | 186 |
Msa0051890 | MtrunA17_Chr5g0402031 | 74.725 | 91 | 18 | 2 | 94 | 182 | 114 | 201 | 2.77e-34 | 126 |
Msa0051890 | MtrunA17_Chr7g0262691 | 62.637 | 91 | 29 | 1 | 85 | 175 | 252 | 337 | 3.90e-29 | 114 |
Msa0051890 | MtrunA17_Chr1g0193321 | 61.538 | 91 | 35 | 0 | 85 | 175 | 462 | 552 | 1.76e-28 | 114 |
Msa0051890 | MtrunA17_Chr1g0182791 | 62.637 | 91 | 23 | 1 | 85 | 175 | 317 | 396 | 1.82e-28 | 113 |
Msa0051890 | MtrunA17_Chr3g0095391 | 57.000 | 100 | 39 | 2 | 65 | 162 | 287 | 384 | 1.01e-26 | 108 |
Msa0051890 | MtrunA17_Chr7g0231461 | 70.968 | 62 | 18 | 0 | 86 | 147 | 298 | 359 | 2.86e-23 | 98.6 |
Msa0051890 | MtrunA17_Chr7g0271251 | 56.667 | 90 | 35 | 1 | 85 | 170 | 432 | 521 | 2.97e-22 | 95.9 |
Msa0051890 | MtrunA17_Chr7g0270871 | 56.098 | 82 | 34 | 2 | 68 | 147 | 183 | 264 | 9.05e-20 | 87.8 |
Msa0051890 | MtrunA17_Chr4g0074161 | 40.146 | 137 | 78 | 3 | 20 | 152 | 138 | 274 | 1.28e-19 | 87.4 |
Msa0051890 | MtrunA17_Chr1g0190731 | 46.835 | 79 | 36 | 1 | 75 | 147 | 177 | 255 | 4.44e-17 | 79.7 |
Msa0051890 | MtrunA17_Chr5g0393721 | 37.615 | 109 | 61 | 1 | 54 | 162 | 200 | 301 | 4.33e-16 | 76.6 |
Msa0051890 | MtrunA17_Chr3g0134741 | 39.241 | 79 | 48 | 0 | 84 | 162 | 228 | 306 | 4.60e-14 | 70.9 |
Msa0051890 | MtrunA17_Chr1g0207311 | 37.500 | 80 | 45 | 1 | 88 | 162 | 194 | 273 | 1.22e-13 | 69.3 |
Msa0051890 | MtrunA17_Chr6g0484271 | 44.304 | 79 | 43 | 1 | 73 | 150 | 143 | 221 | 1.51e-13 | 68.9 |
Msa0051890 | MtrunA17_Chr7g0234761 | 39.560 | 91 | 47 | 2 | 68 | 150 | 293 | 383 | 4.89e-13 | 68.6 |
Msa0051890 | MtrunA17_Chr8g0365941 | 40.000 | 95 | 51 | 2 | 62 | 150 | 277 | 371 | 6.44e-13 | 68.2 |
Msa0051890 | MtrunA17_Chr1g0207301 | 43.548 | 62 | 35 | 0 | 101 | 162 | 304 | 365 | 9.38e-13 | 67.4 |
Msa0051890 | MtrunA17_Chr3g0144641 | 47.692 | 65 | 33 | 1 | 87 | 150 | 193 | 257 | 1.03e-12 | 67.4 |
Msa0051890 | MtrunA17_Chr4g0035101 | 42.353 | 85 | 47 | 2 | 64 | 147 | 123 | 206 | 1.10e-12 | 67.0 |
Msa0051890 | MtrunA17_Chr8g0339091 | 47.692 | 65 | 33 | 1 | 87 | 150 | 293 | 357 | 2.14e-12 | 66.6 |
Msa0051890 | MtrunA17_Chr1g0152131 | 46.154 | 65 | 34 | 1 | 87 | 150 | 262 | 326 | 2.62e-12 | 66.2 |
Msa0051890 | MtrunA17_Chr1g0152651 | 35.052 | 97 | 58 | 1 | 63 | 159 | 257 | 348 | 3.24e-12 | 65.9 |
Msa0051890 | MtrunA17_Chr8g0363921 | 44.615 | 65 | 35 | 1 | 87 | 150 | 153 | 217 | 3.40e-12 | 65.1 |
Msa0051890 | MtrunA17_Chr5g0415291 | 37.000 | 100 | 51 | 3 | 63 | 150 | 79 | 178 | 7.88e-12 | 63.5 |
Msa0051890 | MtrunA17_Chr5g0421111 | 46.154 | 65 | 34 | 1 | 87 | 150 | 367 | 431 | 1.20e-11 | 64.3 |
Msa0051890 | MtrunA17_Chr1g0185621 | 51.786 | 56 | 27 | 0 | 96 | 151 | 476 | 531 | 1.22e-11 | 64.7 |
Msa0051890 | MtrunA17_Chr3g0131771 | 45.205 | 73 | 38 | 2 | 87 | 158 | 149 | 220 | 1.56e-11 | 63.5 |
Msa0051890 | MtrunA17_Chr5g0435021 | 30.496 | 141 | 83 | 4 | 21 | 147 | 141 | 280 | 3.23e-11 | 62.4 |
Msa0051890 | MtrunA17_Chr1g0184841 | 42.697 | 89 | 44 | 2 | 71 | 152 | 100 | 188 | 3.50e-11 | 62.4 |
Msa0051890 | MtrunA17_Chr8g0386921 | 48.077 | 52 | 27 | 0 | 96 | 147 | 407 | 458 | 8.23e-11 | 62.0 |
Msa0051890 | MtrunA17_Chr2g0320291 | 33.028 | 109 | 62 | 3 | 46 | 147 | 81 | 185 | 9.11e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0051890 | AT4G36930.1 | 83.562 | 73 | 12 | 0 | 90 | 162 | 196 | 268 | 5.27e-35 | 129 |
Msa0051890 | AT5G67110.1 | 47.590 | 166 | 72 | 4 | 5 | 160 | 2 | 162 | 1.15e-34 | 124 |
Msa0051890 | AT1G09530.3 | 62.105 | 95 | 26 | 2 | 78 | 170 | 328 | 414 | 1.07e-28 | 114 |
Msa0051890 | AT1G09530.2 | 62.105 | 95 | 26 | 2 | 78 | 170 | 328 | 414 | 1.07e-28 | 114 |
Msa0051890 | AT1G09530.5 | 62.105 | 95 | 26 | 2 | 78 | 170 | 328 | 414 | 1.07e-28 | 114 |
Msa0051890 | AT1G09530.1 | 62.105 | 95 | 26 | 2 | 78 | 170 | 328 | 414 | 1.07e-28 | 114 |
Msa0051890 | AT1G09530.4 | 62.105 | 95 | 26 | 2 | 78 | 170 | 328 | 414 | 1.07e-28 | 114 |
Msa0051890 | AT1G09530.6 | 62.105 | 95 | 26 | 2 | 78 | 170 | 328 | 414 | 1.07e-28 | 114 |
Msa0051890 | AT2G20180.7 | 73.016 | 63 | 17 | 0 | 85 | 147 | 207 | 269 | 9.39e-26 | 105 |
Msa0051890 | AT2G20180.1 | 73.016 | 63 | 17 | 0 | 85 | 147 | 207 | 269 | 9.39e-26 | 105 |
Msa0051890 | AT2G20180.5 | 73.016 | 63 | 17 | 0 | 85 | 147 | 207 | 269 | 9.39e-26 | 105 |
Msa0051890 | AT2G20180.4 | 73.016 | 63 | 17 | 0 | 85 | 147 | 278 | 340 | 2.61e-25 | 104 |
Msa0051890 | AT2G20180.6 | 73.016 | 63 | 17 | 0 | 85 | 147 | 278 | 340 | 2.61e-25 | 104 |
Msa0051890 | AT2G20180.2 | 73.016 | 63 | 17 | 0 | 85 | 147 | 278 | 340 | 2.61e-25 | 104 |
Msa0051890 | AT2G20180.3 | 73.016 | 63 | 17 | 0 | 85 | 147 | 278 | 340 | 2.61e-25 | 104 |
Msa0051890 | AT2G20180.8 | 67.143 | 70 | 23 | 0 | 77 | 146 | 270 | 339 | 3.68e-25 | 102 |
Msa0051890 | AT4G00050.2 | 65.714 | 70 | 24 | 0 | 78 | 147 | 98 | 167 | 4.30e-24 | 99.0 |
Msa0051890 | AT4G00050.3 | 65.714 | 70 | 24 | 0 | 78 | 147 | 200 | 269 | 9.43e-24 | 99.4 |
Msa0051890 | AT4G00050.1 | 65.714 | 70 | 24 | 0 | 78 | 147 | 200 | 269 | 1.36e-23 | 99.0 |
Msa0051890 | AT4G28800.1 | 54.762 | 84 | 37 | 1 | 85 | 168 | 249 | 331 | 1.64e-21 | 93.6 |
Msa0051890 | AT4G28800.2 | 64.062 | 64 | 23 | 0 | 85 | 148 | 261 | 324 | 8.94e-21 | 91.7 |
Msa0051890 | AT2G46970.3 | 37.956 | 137 | 69 | 2 | 68 | 190 | 184 | 318 | 1.04e-20 | 90.9 |
Msa0051890 | AT2G46970.2 | 37.956 | 137 | 69 | 2 | 68 | 190 | 175 | 309 | 1.05e-20 | 90.9 |
Msa0051890 | AT4G28815.2 | 59.375 | 64 | 26 | 0 | 85 | 148 | 68 | 131 | 1.13e-20 | 88.2 |
Msa0051890 | AT2G46970.1 | 37.956 | 137 | 69 | 2 | 68 | 190 | 206 | 340 | 1.36e-20 | 90.9 |
Msa0051890 | AT4G28815.1 | 59.375 | 64 | 26 | 0 | 85 | 148 | 144 | 207 | 3.75e-20 | 88.2 |
Msa0051890 | AT4G28790.1 | 65.079 | 63 | 22 | 0 | 85 | 147 | 271 | 333 | 3.95e-20 | 89.4 |
Msa0051890 | AT3G59060.1 | 54.651 | 86 | 36 | 1 | 85 | 170 | 250 | 332 | 5.28e-20 | 89.4 |
Msa0051890 | AT3G59060.3 | 54.651 | 86 | 36 | 1 | 85 | 170 | 250 | 332 | 5.60e-20 | 89.4 |
Msa0051890 | AT3G59060.2 | 54.651 | 86 | 36 | 1 | 85 | 170 | 250 | 332 | 5.60e-20 | 89.4 |
Msa0051890 | AT3G59060.4 | 54.651 | 86 | 36 | 1 | 85 | 170 | 250 | 332 | 5.60e-20 | 89.4 |
Msa0051890 | AT2G24260.2 | 55.556 | 72 | 28 | 1 | 80 | 147 | 26 | 97 | 6.91e-20 | 86.3 |
Msa0051890 | AT4G28790.2 | 62.121 | 66 | 25 | 0 | 85 | 150 | 271 | 336 | 1.09e-19 | 87.4 |
Msa0051890 | AT2G43010.2 | 58.824 | 85 | 30 | 1 | 86 | 170 | 252 | 331 | 1.54e-19 | 87.8 |
Msa0051890 | AT2G43010.4 | 58.824 | 85 | 30 | 1 | 86 | 170 | 252 | 331 | 1.55e-19 | 87.8 |
Msa0051890 | AT5G58010.1 | 47.778 | 90 | 40 | 2 | 83 | 165 | 97 | 186 | 1.58e-19 | 86.3 |
Msa0051890 | AT2G43010.1 | 58.824 | 85 | 30 | 1 | 86 | 170 | 252 | 331 | 1.59e-19 | 87.8 |
Msa0051890 | AT2G43010.3 | 58.824 | 85 | 30 | 1 | 86 | 170 | 259 | 338 | 1.94e-19 | 87.4 |
Msa0051890 | AT2G24260.1 | 54.430 | 79 | 31 | 2 | 79 | 152 | 128 | 206 | 2.34e-19 | 86.7 |
Msa0051890 | AT2G43010.5 | 58.824 | 85 | 30 | 1 | 86 | 170 | 294 | 373 | 2.81e-19 | 87.4 |
Msa0051890 | AT4G30980.1 | 45.652 | 92 | 45 | 2 | 62 | 152 | 111 | 198 | 5.16e-19 | 85.1 |
Msa0051890 | AT4G30980.2 | 45.652 | 92 | 45 | 2 | 62 | 152 | 159 | 246 | 1.69e-18 | 84.3 |
Msa0051890 | AT5G61270.2 | 47.826 | 92 | 46 | 1 | 59 | 150 | 48 | 137 | 5.16e-18 | 82.0 |
Msa0051890 | AT5G61270.3 | 47.826 | 92 | 46 | 1 | 59 | 150 | 48 | 137 | 5.16e-18 | 82.0 |
Msa0051890 | AT5G61270.1 | 47.826 | 92 | 46 | 1 | 59 | 150 | 136 | 225 | 9.39e-18 | 82.4 |
Msa0051890 | AT3G62090.1 | 54.545 | 66 | 30 | 0 | 88 | 153 | 168 | 233 | 1.58e-15 | 75.9 |
Msa0051890 | AT3G62090.2 | 51.429 | 70 | 34 | 0 | 84 | 153 | 181 | 250 | 1.79e-15 | 75.9 |
Msa0051890 | AT5G67110.3 | 36.145 | 166 | 69 | 5 | 5 | 160 | 2 | 140 | 2.45e-15 | 72.8 |
Msa0051890 | AT4G33880.1 | 36.449 | 107 | 61 | 1 | 63 | 162 | 237 | 343 | 3.49e-15 | 74.7 |
Msa0051890 | AT1G27740.1 | 36.634 | 101 | 60 | 1 | 62 | 162 | 148 | 244 | 8.03e-15 | 72.8 |
Msa0051890 | AT4G28811.1 | 63.492 | 63 | 23 | 0 | 85 | 147 | 351 | 413 | 2.89e-14 | 72.8 |
Msa0051890 | AT2G14760.3 | 37.000 | 100 | 62 | 1 | 64 | 162 | 228 | 327 | 6.20e-14 | 71.2 |
Msa0051890 | AT5G67110.2 | 35.211 | 142 | 77 | 4 | 6 | 137 | 3 | 139 | 1.10e-13 | 67.4 |
Msa0051890 | AT5G50915.3 | 43.038 | 79 | 41 | 2 | 76 | 150 | 124 | 202 | 3.69e-13 | 68.2 |
Msa0051890 | AT5G50915.4 | 43.038 | 79 | 41 | 2 | 76 | 150 | 124 | 202 | 3.69e-13 | 68.2 |
Msa0051890 | AT5G50915.1 | 43.038 | 79 | 41 | 2 | 76 | 150 | 124 | 202 | 4.34e-13 | 68.2 |
Msa0051890 | AT5G50915.2 | 43.038 | 79 | 41 | 2 | 76 | 150 | 124 | 202 | 4.34e-13 | 68.2 |
Msa0051890 | AT2G14760.1 | 36.709 | 79 | 50 | 0 | 84 | 162 | 236 | 314 | 6.31e-13 | 68.2 |
Msa0051890 | AT5G43175.1 | 28.571 | 133 | 94 | 1 | 31 | 162 | 77 | 209 | 7.34e-13 | 66.6 |
Msa0051890 | AT5G48560.2 | 47.692 | 65 | 33 | 1 | 87 | 150 | 303 | 367 | 1.35e-12 | 67.8 |
Msa0051890 | AT3G07340.2 | 47.692 | 65 | 33 | 1 | 87 | 150 | 260 | 324 | 1.38e-12 | 67.4 |
Msa0051890 | AT3G07340.1 | 47.692 | 65 | 33 | 1 | 87 | 150 | 260 | 324 | 1.46e-12 | 67.4 |
Msa0051890 | AT5G48560.1 | 47.692 | 65 | 33 | 1 | 87 | 150 | 303 | 367 | 1.63e-12 | 67.4 |
Msa0051890 | AT1G68920.3 | 47.692 | 65 | 33 | 1 | 87 | 150 | 304 | 368 | 1.71e-12 | 67.4 |
Msa0051890 | AT1G68920.1 | 47.692 | 65 | 33 | 1 | 87 | 150 | 305 | 369 | 1.78e-12 | 67.4 |
Msa0051890 | AT1G68920.4 | 47.692 | 65 | 33 | 1 | 87 | 150 | 305 | 369 | 1.78e-12 | 67.4 |
Msa0051890 | AT1G68920.2 | 47.692 | 65 | 33 | 1 | 87 | 150 | 305 | 369 | 1.78e-12 | 67.4 |
Msa0051890 | AT5G62610.2 | 39.362 | 94 | 50 | 3 | 87 | 177 | 155 | 244 | 2.01e-12 | 66.2 |
Msa0051890 | AT5G62610.1 | 39.362 | 94 | 50 | 3 | 87 | 177 | 155 | 244 | 2.01e-12 | 66.2 |
Msa0051890 | AT4G36540.2 | 46.154 | 65 | 34 | 1 | 87 | 150 | 143 | 207 | 2.53e-12 | 66.2 |
Msa0051890 | AT4G36540.1 | 46.154 | 65 | 34 | 1 | 87 | 150 | 143 | 207 | 2.54e-12 | 66.2 |
Msa0051890 | AT1G73830.2 | 44.615 | 65 | 35 | 1 | 87 | 150 | 149 | 213 | 4.51e-12 | 65.1 |
Msa0051890 | AT1G73830.1 | 44.615 | 65 | 35 | 1 | 87 | 150 | 149 | 213 | 4.87e-12 | 64.7 |
Msa0051890 | AT2G18300.2 | 46.154 | 65 | 34 | 1 | 87 | 150 | 187 | 251 | 5.96e-12 | 65.5 |
Msa0051890 | AT2G18300.1 | 46.154 | 65 | 34 | 1 | 87 | 150 | 187 | 251 | 6.14e-12 | 65.1 |
Msa0051890 | AT1G10120.2 | 46.154 | 65 | 34 | 1 | 87 | 150 | 208 | 272 | 6.76e-12 | 65.1 |
Msa0051890 | AT1G10120.1 | 46.154 | 65 | 34 | 1 | 87 | 150 | 208 | 272 | 6.76e-12 | 65.1 |
Msa0051890 | AT3G23690.1 | 44.615 | 65 | 35 | 1 | 87 | 150 | 193 | 257 | 7.20e-12 | 65.1 |
Msa0051890 | AT2G18300.3 | 46.154 | 65 | 34 | 1 | 87 | 150 | 187 | 251 | 7.37e-12 | 65.1 |
Msa0051890 | AT1G26260.4 | 44.615 | 65 | 35 | 1 | 87 | 150 | 225 | 289 | 8.74e-12 | 65.1 |
Msa0051890 | AT1G26260.1 | 44.615 | 65 | 35 | 1 | 87 | 150 | 225 | 289 | 8.74e-12 | 65.1 |
Msa0051890 | AT1G26260.6 | 44.615 | 65 | 35 | 1 | 87 | 150 | 225 | 289 | 8.74e-12 | 65.1 |
Msa0051890 | AT1G26260.2 | 44.615 | 65 | 35 | 1 | 87 | 150 | 225 | 289 | 8.74e-12 | 65.1 |
Msa0051890 | AT1G59640.1 | 44.615 | 65 | 35 | 1 | 87 | 150 | 138 | 202 | 8.95e-12 | 64.3 |
Msa0051890 | AT1G26260.5 | 44.615 | 65 | 35 | 1 | 87 | 150 | 203 | 267 | 9.23e-12 | 65.1 |
Msa0051890 | AT1G26260.3 | 44.615 | 65 | 35 | 1 | 87 | 150 | 174 | 238 | 9.37e-12 | 64.7 |
Msa0051890 | AT4G34530.1 | 43.077 | 65 | 36 | 1 | 87 | 150 | 174 | 238 | 1.06e-11 | 64.7 |
Msa0051890 | AT1G59640.2 | 46.774 | 62 | 32 | 1 | 87 | 147 | 138 | 199 | 1.88e-11 | 63.9 |
Msa0051890 | AT1G02340.2 | 56.000 | 50 | 21 | 1 | 99 | 147 | 134 | 183 | 1.99e-11 | 63.5 |
Msa0051890 | AT1G02340.1 | 56.000 | 50 | 21 | 1 | 99 | 147 | 141 | 190 | 2.04e-11 | 63.5 |
Msa0051890 | AT1G18400.2 | 43.077 | 65 | 36 | 1 | 87 | 150 | 147 | 211 | 2.29e-11 | 62.8 |
Msa0051890 | AT1G18400.1 | 43.077 | 65 | 36 | 1 | 87 | 150 | 147 | 211 | 2.56e-11 | 62.8 |
Msa0051890 | AT1G25330.1 | 44.615 | 65 | 35 | 1 | 87 | 150 | 106 | 170 | 3.09e-11 | 62.0 |
Msa0051890 | AT1G63650.3 | 53.846 | 52 | 24 | 0 | 96 | 147 | 406 | 457 | 4.09e-11 | 63.5 |
Msa0051890 | AT1G63650.1 | 53.846 | 52 | 24 | 0 | 96 | 147 | 406 | 457 | 4.09e-11 | 63.5 |
Msa0051890 | AT1G63650.2 | 53.846 | 52 | 24 | 0 | 96 | 147 | 406 | 457 | 4.09e-11 | 63.5 |
Msa0051890 | AT1G66470.1 | 43.056 | 72 | 36 | 1 | 76 | 147 | 191 | 257 | 4.89e-11 | 62.4 |
Msa0051890 | AT1G03040.1 | 42.045 | 88 | 41 | 2 | 75 | 152 | 125 | 212 | 7.32e-11 | 62.0 |
Msa0051890 | AT1G03040.2 | 30.769 | 182 | 92 | 5 | 75 | 235 | 120 | 288 | 7.38e-11 | 61.6 |
Msa0051890 | AT2G22770.1 | 53.846 | 52 | 24 | 0 | 96 | 147 | 133 | 184 | 8.77e-11 | 61.6 |
Find 70 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TACATCACCTTGTTAGAATT+TGG | 0.111527 | 1_2:-6055424 | None:intergenic |
CATGAGTTGGTTGAATAAAT+TGG | 0.211961 | 1_2:-6054705 | None:intergenic |
CAACATGCCACAACTGATTA+TGG | 0.244370 | 1_2:+6056662 | Msa0051890:CDS |
ATTAATTCTGCAGATGTTAA+TGG | 0.295896 | 1_2:+6056259 | Msa0051890:intron |
CTTGAATTCACCAGAGATAA+AGG | 0.298355 | 1_2:+6056733 | Msa0051890:three_prime_UTR |
TTTGACATGCTGCATTGTTC+TGG | 0.325901 | 1_2:-6056458 | None:intergenic |
CTCAAATTTGACACTACATT+AGG | 0.351513 | 1_2:+6056820 | Msa0051890:three_prime_UTR |
CTCTTCTTCCTCTTCTGCTC+AGG | 0.354272 | 1_2:+6054811 | Msa0051890:CDS |
TAAGAGATGGTGGAAGGATT+AGG | 0.357303 | 1_2:-6054773 | None:intergenic |
TTGGAGAAGTCTTGAGAATC+AGG | 0.361248 | 1_2:-6054686 | None:intergenic |
GTTCCATAATTTGTCTGAAA+AGG | 0.391347 | 1_2:+6055260 | Msa0051890:CDS |
TTGCATCCAATGTCGTTATC+AGG | 0.395094 | 1_2:+6056299 | Msa0051890:CDS |
GAACAAGTGATGGGTGTGTT+TGG | 0.440894 | 1_2:-6054661 | None:intergenic |
AATGTTATTACAGTTATCAA+TGG | 0.444309 | 1_2:-6056888 | None:intergenic |
AGGAGGAGGGTAAGAGATGG+TGG | 0.449041 | 1_2:-6054783 | None:intergenic |
ACACTACATTAGGTTGTTTG+TGG | 0.463808 | 1_2:+6056830 | Msa0051890:three_prime_UTR |
GCGAAATATTCATTGTTAGC+AGG | 0.465887 | 1_2:-6056416 | None:intergenic |
AAGCTGCTTTAAATATTCAA+TGG | 0.465998 | 1_2:-6055603 | None:intergenic |
AATCTTGATGAGGGTAATAG+TGG | 0.470391 | 1_2:+6056362 | Msa0051890:CDS |
TTGAAAGATGATGAAGAAGA+TGG | 0.470481 | 1_2:-6054731 | None:intergenic |
AAGAATTCATCAATTAGAAA+AGG | 0.474846 | 1_2:+6056913 | Msa0051890:three_prime_UTR |
CAATTTATTCAACCAACTCA+TGG | 0.476360 | 1_2:+6054706 | Msa0051890:CDS |
GGTGGGGCAGCCTTTGATGA+TGG | 0.476408 | 1_2:-6055201 | None:intergenic |
GAAGAAGAGAAATGAGGAGG+AGG | 0.480762 | 1_2:-6054797 | None:intergenic |
GGTGGAAGGATTAGGAGGAT+AGG | 0.482360 | 1_2:-6054765 | None:intergenic |
TCAAACATGAACCTTAATAG+AGG | 0.484571 | 1_2:-6056546 | None:intergenic |
TTTGAAGAAGAACGTGGTGG+TGG | 0.492656 | 1_2:-6055219 | None:intergenic |
ATTATGGATACAACAAGGAT+TGG | 0.493878 | 1_2:+6056678 | Msa0051890:CDS |
GGAGGGTAAGAGATGGTGGA+AGG | 0.497229 | 1_2:-6054779 | None:intergenic |
GTGGAAGGATTAGGAGGATA+GGG | 0.512443 | 1_2:-6054764 | None:intergenic |
AATATTCATTGTTAGCAGGC+GGG | 0.525894 | 1_2:-6056412 | None:intergenic |
GATATATACCTGAGCAGAAG+AGG | 0.528648 | 1_2:-6054819 | None:intergenic |
GAATCAGGAGGAACAAGTGA+TGG | 0.531363 | 1_2:-6054671 | None:intergenic |
GAGATGGTGGAAGGATTAGG+AGG | 0.532760 | 1_2:-6054770 | None:intergenic |
AAGAAGAGAAATGAGGAGGA+GGG | 0.533296 | 1_2:-6054796 | None:intergenic |
ATGAGGAGGAGGGTAAGAGA+TGG | 0.537204 | 1_2:-6054786 | None:intergenic |
TTGAAGAAGAACGTGGTGGT+GGG | 0.545725 | 1_2:-6055218 | None:intergenic |
ATATTCATTGTTAGCAGGCG+GGG | 0.547212 | 1_2:-6056411 | None:intergenic |
TTCAGAGTTGCCATCATCAA+AGG | 0.550812 | 1_2:+6055191 | Msa0051890:CDS |
AATGAATGGAACAGAGAAGG+AGG | 0.550832 | 1_2:+6055359 | Msa0051890:intron |
CAGATGTTAATGGTGAGAAA+TGG | 0.552941 | 1_2:+6056269 | Msa0051890:intron |
GAAGAGGAAGAAGAGAAATG+AGG | 0.557122 | 1_2:-6054803 | None:intergenic |
ACAATAATAACAATAATGGC+TGG | 0.560564 | 1_2:+6054617 | None:intergenic |
GTTTATGACACATCAGAAGA+AGG | 0.583034 | 1_2:-6056708 | None:intergenic |
TGAAGAAGAACGTGGTGGTG+GGG | 0.583658 | 1_2:-6055217 | None:intergenic |
TGAGTTGTTCAATCTTGATG+AGG | 0.583812 | 1_2:+6056352 | Msa0051890:CDS |
AAATATTCATTGTTAGCAGG+CGG | 0.584130 | 1_2:-6056413 | None:intergenic |
TCAATCTGTAATCATACCCT+CGG | 0.590382 | 1_2:+6056481 | Msa0051890:CDS |
TCAGTTGTGGCATGTTGTTG+TGG | 0.593873 | 1_2:-6056656 | None:intergenic |
TTTAATTCCAAATTCTAACA+AGG | 0.599565 | 1_2:+6055417 | Msa0051890:CDS |
GAGGAAGAAGAGAAATGAGG+AGG | 0.607406 | 1_2:-6054800 | None:intergenic |
GAGTTGTTCAATCTTGATGA+GGG | 0.608970 | 1_2:+6056353 | Msa0051890:CDS |
TAAAGCTTCAATGTTAGATG+AGG | 0.610444 | 1_2:+6055580 | Msa0051890:CDS |
AGAGGTTTGAAAACTTGATG+AGG | 0.611385 | 1_2:-6056528 | None:intergenic |
AATCAGGAGGAACAAGTGAT+GGG | 0.615697 | 1_2:-6054670 | None:intergenic |
TGAAGCTAAATTTGTCGCCG+AGG | 0.617569 | 1_2:-6056498 | None:intergenic |
GATCCTCCTGATAACGACAT+TGG | 0.621566 | 1_2:-6056305 | None:intergenic |
AAGAAGATGGATCCATGAGT+TGG | 0.625627 | 1_2:-6054718 | None:intergenic |
GTTGTATCCATAATCAGTTG+TGG | 0.626275 | 1_2:-6056669 | None:intergenic |
CTTCTCTTTGAAGAAGAACG+TGG | 0.628949 | 1_2:-6055225 | None:intergenic |
AGATTGAACAACTCAGTCTG+AGG | 0.648355 | 1_2:-6056344 | None:intergenic |
CTCTTTGAAGAAGAACGTGG+TGG | 0.649691 | 1_2:-6055222 | None:intergenic |
GAAGCTAAATTTGTCGCCGA+GGG | 0.651831 | 1_2:-6056497 | None:intergenic |
TCAGTCTGAGGAAACATCGT+AGG | 0.657116 | 1_2:-6056332 | None:intergenic |
CTAACAATGAATATTTCGCA+CGG | 0.657592 | 1_2:+6056420 | Msa0051890:CDS |
CATCCAATGTCGTTATCAGG+AGG | 0.666461 | 1_2:+6056302 | Msa0051890:CDS |
TGTCGTTATCAGGAGGATCG+CGG | 0.666590 | 1_2:+6056309 | Msa0051890:CDS |
TTGTGGTACAATTAGCAACA+CGG | 0.667238 | 1_2:+6056847 | Msa0051890:three_prime_UTR |
GAGAAGTCTTGAGAATCAGG+AGG | 0.678745 | 1_2:-6054683 | None:intergenic |
AACTGATTATGGATACAACA+AGG | 0.695121 | 1_2:+6056673 | Msa0051890:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAAAGTTATAGTAATATTT+AGG | - | chr1_2:6054903-6054922 | None:intergenic | 10.0% |
!! | ATAAAGTTATAGTAATATTT+AGG | - | chr1_2:6054903-6054922 | None:intergenic | 10.0% |
!!! | AAAAGAATCTTTCTTTTTAA+GGG | - | chr1_2:6055305-6055324 | None:intergenic | 15.0% |
!!! | AAAAAGAATCTTTCTTTTTA+AGG | - | chr1_2:6055306-6055325 | None:intergenic | 15.0% |
!! | ATTAAAATTCAAAATCAGAA+AGG | - | chr1_2:6055342-6055361 | None:intergenic | 15.0% |
!!! | TGATTTTGAATTTTAATGAA+TGG | + | chr1_2:6055345-6055364 | Msa0051890:intron | 15.0% |
!! | AACATGTTAAATATTATGAA+TGG | + | chr1_2:6055681-6055700 | Msa0051890:intron | 15.0% |
!! | TATCTTATGTACATATTATA+AGG | - | chr1_2:6055862-6055881 | None:intergenic | 15.0% |
!!! | AAGATATTTTCAACTTATTT+TGG | + | chr1_2:6055876-6055895 | Msa0051890:intron | 15.0% |
!!! | AAAAGAATCTTTCTTTTTAA+GGG | - | chr1_2:6055305-6055324 | None:intergenic | 15.0% |
!!! | AAAAAGAATCTTTCTTTTTA+AGG | - | chr1_2:6055306-6055325 | None:intergenic | 15.0% |
!! | ATTAAAATTCAAAATCAGAA+AGG | - | chr1_2:6055342-6055361 | None:intergenic | 15.0% |
!!! | TGATTTTGAATTTTAATGAA+TGG | + | chr1_2:6055345-6055364 | Msa0051890:intron | 15.0% |
!! | AACATGTTAAATATTATGAA+TGG | + | chr1_2:6055681-6055700 | Msa0051890:intron | 15.0% |
!! | TATCTTATGTACATATTATA+AGG | - | chr1_2:6055862-6055881 | None:intergenic | 15.0% |
!!! | AAGATATTTTCAACTTATTT+TGG | + | chr1_2:6055876-6055895 | Msa0051890:intron | 15.0% |
!! | TATTTAGGAAGTTTGAATTA+TGG | - | chr1_2:6054888-6054907 | None:intergenic | 20.0% |
!! | GAAAACTCAAAAACAAAATT+TGG | + | chr1_2:6055034-6055053 | Msa0051890:intron | 20.0% |
!! | TTTAATTCCAAATTCTAACA+AGG | + | chr1_2:6055417-6055436 | Msa0051890:CDS | 20.0% |
!!! | TATTTTTCTTCTTATTCTTG+TGG | + | chr1_2:6055515-6055534 | Msa0051890:intron | 20.0% |
!! | ACTTATAGCTTATATGAAAA+CGG | + | chr1_2:6055928-6055947 | Msa0051890:intron | 20.0% |
!! | AATGTTATTACAGTTATCAA+TGG | - | chr1_2:6056891-6056910 | None:intergenic | 20.0% |
!! | AAGAATTCATCAATTAGAAA+AGG | + | chr1_2:6056913-6056932 | Msa0051890:three_prime_UTR | 20.0% |
!! | TATTTAGGAAGTTTGAATTA+TGG | - | chr1_2:6054888-6054907 | None:intergenic | 20.0% |
!! | GAAAACTCAAAAACAAAATT+TGG | + | chr1_2:6055034-6055053 | Msa0051890:intron | 20.0% |
!! | TTTAATTCCAAATTCTAACA+AGG | + | chr1_2:6055417-6055436 | Msa0051890:CDS | 20.0% |
!!! | TATTTTTCTTCTTATTCTTG+TGG | + | chr1_2:6055515-6055534 | Msa0051890:intron | 20.0% |
!! | ACTTATAGCTTATATGAAAA+CGG | + | chr1_2:6055928-6055947 | Msa0051890:intron | 20.0% |
!! | AATGTTATTACAGTTATCAA+TGG | - | chr1_2:6056891-6056910 | None:intergenic | 20.0% |
!! | AAGAATTCATCAATTAGAAA+AGG | + | chr1_2:6056913-6056932 | Msa0051890:three_prime_UTR | 20.0% |
! | TATCAAACATGCACTTAATA+TGG | + | chr1_2:6054998-6055017 | Msa0051890:intron | 25.0% |
!!! | TTTTGTTTGAAGAATGATGA+AGG | + | chr1_2:6055168-6055187 | Msa0051890:intron | 25.0% |
!! | AAGCTGCTTTAAATATTCAA+TGG | - | chr1_2:6055606-6055625 | None:intergenic | 25.0% |
! | ACTTATTTACGCTTATTTAC+TGG | + | chr1_2:6055790-6055809 | Msa0051890:intron | 25.0% |
! | AATTTATCCAAAGTGACTAT+AGG | + | chr1_2:6056193-6056212 | Msa0051890:intron | 25.0% |
! | ATTAATTCTGCAGATGTTAA+TGG | + | chr1_2:6056259-6056278 | Msa0051890:intron | 25.0% |
!! | AAGTTTTCAAACCTCTATTA+AGG | + | chr1_2:6056535-6056554 | Msa0051890:CDS | 25.0% |
! | TATCAAACATGCACTTAATA+TGG | + | chr1_2:6054998-6055017 | Msa0051890:intron | 25.0% |
!!! | TTTTGTTTGAAGAATGATGA+AGG | + | chr1_2:6055168-6055187 | Msa0051890:intron | 25.0% |
!! | AAGCTGCTTTAAATATTCAA+TGG | - | chr1_2:6055606-6055625 | None:intergenic | 25.0% |
! | ACTTATTTACGCTTATTTAC+TGG | + | chr1_2:6055790-6055809 | Msa0051890:intron | 25.0% |
! | AATTTATCCAAAGTGACTAT+AGG | + | chr1_2:6056193-6056212 | Msa0051890:intron | 25.0% |
! | ATTAATTCTGCAGATGTTAA+TGG | + | chr1_2:6056259-6056278 | Msa0051890:intron | 25.0% |
!! | AAGTTTTCAAACCTCTATTA+AGG | + | chr1_2:6056535-6056554 | Msa0051890:CDS | 25.0% |
!! | CATGAGTTGGTTGAATAAAT+TGG | - | chr1_2:6054708-6054727 | None:intergenic | 30.0% |
CAATTTATTCAACCAACTCA+TGG | + | chr1_2:6054706-6054725 | Msa0051890:CDS | 30.0% | |
TTGAAAGATGATGAAGAAGA+TGG | - | chr1_2:6054734-6054753 | None:intergenic | 30.0% | |
TAACTTTATCTTGCACCATT+AGG | + | chr1_2:6054914-6054933 | Msa0051890:intron | 30.0% | |
AACTTTATCTTGCACCATTA+GGG | + | chr1_2:6054915-6054934 | Msa0051890:intron | 30.0% | |
TAAGTGCATGTTTGATATCA+CGG | - | chr1_2:6054995-6055014 | None:intergenic | 30.0% | |
! | GTTCCATAATTTGTCTGAAA+AGG | + | chr1_2:6055260-6055279 | Msa0051890:CDS | 30.0% |
! | GAACCTTTTCAGACAAATTA+TGG | - | chr1_2:6055266-6055285 | None:intergenic | 30.0% |
TTTAATGAATGGAACAGAGA+AGG | + | chr1_2:6055356-6055375 | Msa0051890:intron | 30.0% | |
TACATCACCTTGTTAGAATT+TGG | - | chr1_2:6055427-6055446 | None:intergenic | 30.0% | |
TAAAGCTTCAATGTTAGATG+AGG | + | chr1_2:6055580-6055599 | Msa0051890:CDS | 30.0% | |
TTGACAATTTGACATGGTTA+AGG | - | chr1_2:6055729-6055748 | None:intergenic | 30.0% | |
! | AGTGTTGTTGATGAAACAAA+AGG | + | chr1_2:6055748-6055767 | Msa0051890:intron | 30.0% |
TAAGCGTAAATAAGTCAATC+CGG | - | chr1_2:6055785-6055804 | None:intergenic | 30.0% | |
! | ATTAGTCCATGATGGAATAA+TGG | - | chr1_2:6056220-6056239 | None:intergenic | 30.0% |
AAGTAACAATTAGTCCATGA+TGG | - | chr1_2:6056228-6056247 | None:intergenic | 30.0% | |
AAATATTCATTGTTAGCAGG+CGG | - | chr1_2:6056416-6056435 | None:intergenic | 30.0% | |
CTAACAATGAATATTTCGCA+CGG | + | chr1_2:6056420-6056439 | Msa0051890:CDS | 30.0% | |
TCAAACATGAACCTTAATAG+AGG | - | chr1_2:6056549-6056568 | None:intergenic | 30.0% | |
!! | AACTCTTATTTCTGATGTGA+AGG | + | chr1_2:6056623-6056642 | Msa0051890:intron | 30.0% |
AACTGATTATGGATACAACA+AGG | + | chr1_2:6056673-6056692 | Msa0051890:CDS | 30.0% | |
ATTATGGATACAACAAGGAT+TGG | + | chr1_2:6056678-6056697 | Msa0051890:CDS | 30.0% | |
!!! | ACCAGAGATAAAGGATTTTT+TGG | + | chr1_2:6056742-6056761 | Msa0051890:three_prime_UTR | 30.0% |
TCCAAAAAATCCTTTATCTC+TGG | - | chr1_2:6056746-6056765 | None:intergenic | 30.0% | |
!!! | TTGGACATGTCATTTTGAAA+AGG | + | chr1_2:6056761-6056780 | Msa0051890:three_prime_UTR | 30.0% |
!!! | TGGACATGTCATTTTGAAAA+GGG | + | chr1_2:6056762-6056781 | Msa0051890:three_prime_UTR | 30.0% |
CTCAAATTTGACACTACATT+AGG | + | chr1_2:6056820-6056839 | Msa0051890:three_prime_UTR | 30.0% | |
!! | CATGAGTTGGTTGAATAAAT+TGG | - | chr1_2:6054708-6054727 | None:intergenic | 30.0% |
CAATTTATTCAACCAACTCA+TGG | + | chr1_2:6054706-6054725 | Msa0051890:CDS | 30.0% | |
TTGAAAGATGATGAAGAAGA+TGG | - | chr1_2:6054734-6054753 | None:intergenic | 30.0% | |
TAACTTTATCTTGCACCATT+AGG | + | chr1_2:6054914-6054933 | Msa0051890:intron | 30.0% | |
AACTTTATCTTGCACCATTA+GGG | + | chr1_2:6054915-6054934 | Msa0051890:intron | 30.0% | |
TAAGTGCATGTTTGATATCA+CGG | - | chr1_2:6054995-6055014 | None:intergenic | 30.0% | |
! | GTTCCATAATTTGTCTGAAA+AGG | + | chr1_2:6055260-6055279 | Msa0051890:CDS | 30.0% |
! | GAACCTTTTCAGACAAATTA+TGG | - | chr1_2:6055266-6055285 | None:intergenic | 30.0% |
TTTAATGAATGGAACAGAGA+AGG | + | chr1_2:6055356-6055375 | Msa0051890:intron | 30.0% | |
TACATCACCTTGTTAGAATT+TGG | - | chr1_2:6055427-6055446 | None:intergenic | 30.0% | |
TAAAGCTTCAATGTTAGATG+AGG | + | chr1_2:6055580-6055599 | Msa0051890:CDS | 30.0% | |
TTGACAATTTGACATGGTTA+AGG | - | chr1_2:6055729-6055748 | None:intergenic | 30.0% | |
! | AGTGTTGTTGATGAAACAAA+AGG | + | chr1_2:6055748-6055767 | Msa0051890:intron | 30.0% |
TAAGCGTAAATAAGTCAATC+CGG | - | chr1_2:6055785-6055804 | None:intergenic | 30.0% | |
! | ATTAGTCCATGATGGAATAA+TGG | - | chr1_2:6056220-6056239 | None:intergenic | 30.0% |
AAGTAACAATTAGTCCATGA+TGG | - | chr1_2:6056228-6056247 | None:intergenic | 30.0% | |
AAATATTCATTGTTAGCAGG+CGG | - | chr1_2:6056416-6056435 | None:intergenic | 30.0% | |
CTAACAATGAATATTTCGCA+CGG | + | chr1_2:6056420-6056439 | Msa0051890:CDS | 30.0% | |
TCAAACATGAACCTTAATAG+AGG | - | chr1_2:6056549-6056568 | None:intergenic | 30.0% | |
!! | AACTCTTATTTCTGATGTGA+AGG | + | chr1_2:6056623-6056642 | Msa0051890:intron | 30.0% |
AACTGATTATGGATACAACA+AGG | + | chr1_2:6056673-6056692 | Msa0051890:CDS | 30.0% | |
ATTATGGATACAACAAGGAT+TGG | + | chr1_2:6056678-6056697 | Msa0051890:CDS | 30.0% | |
!!! | ACCAGAGATAAAGGATTTTT+TGG | + | chr1_2:6056742-6056761 | Msa0051890:three_prime_UTR | 30.0% |
TCCAAAAAATCCTTTATCTC+TGG | - | chr1_2:6056746-6056765 | None:intergenic | 30.0% | |
!!! | TTGGACATGTCATTTTGAAA+AGG | + | chr1_2:6056761-6056780 | Msa0051890:three_prime_UTR | 30.0% |
!!! | TGGACATGTCATTTTGAAAA+GGG | + | chr1_2:6056762-6056781 | Msa0051890:three_prime_UTR | 30.0% |
CTCAAATTTGACACTACATT+AGG | + | chr1_2:6056820-6056839 | Msa0051890:three_prime_UTR | 30.0% | |
TATTAGCAAACAAGCCCTAA+TGG | - | chr1_2:6054932-6054951 | None:intergenic | 35.0% | |
! | TTAGGGCTTGTTTGCTAATA+CGG | + | chr1_2:6054932-6054951 | Msa0051890:intron | 35.0% |
CAACACTTGACAATTTGACA+TGG | - | chr1_2:6055735-6055754 | None:intergenic | 35.0% | |
! | GTTGATGAAACAAAAGGCTA+AGG | + | chr1_2:6055754-6055773 | Msa0051890:intron | 35.0% |
!!! | CTTATTTTGGTAAGCTCTTC+AGG | + | chr1_2:6055889-6055908 | Msa0051890:intron | 35.0% |
GATGATCCAAATTGAGTCAT+AGG | - | chr1_2:6056073-6056092 | None:intergenic | 35.0% | |
! | TAATGGACCTATAGTCACTT+TGG | - | chr1_2:6056203-6056222 | None:intergenic | 35.0% |
ATAGGTCCATTATTCCATCA+TGG | + | chr1_2:6056211-6056230 | Msa0051890:intron | 35.0% | |
CAGATGTTAATGGTGAGAAA+TGG | + | chr1_2:6056269-6056288 | Msa0051890:intron | 35.0% | |
TGAGTTGTTCAATCTTGATG+AGG | + | chr1_2:6056352-6056371 | Msa0051890:CDS | 35.0% | |
GAGTTGTTCAATCTTGATGA+GGG | + | chr1_2:6056353-6056372 | Msa0051890:CDS | 35.0% | |
AATCTTGATGAGGGTAATAG+TGG | + | chr1_2:6056362-6056381 | Msa0051890:CDS | 35.0% | |
AATATTCATTGTTAGCAGGC+GGG | - | chr1_2:6056415-6056434 | None:intergenic | 35.0% | |
GCGAAATATTCATTGTTAGC+AGG | - | chr1_2:6056419-6056438 | None:intergenic | 35.0% | |
TCAATCTGTAATCATACCCT+CGG | + | chr1_2:6056481-6056500 | Msa0051890:CDS | 35.0% | |
AGAGGTTTGAAAACTTGATG+AGG | - | chr1_2:6056531-6056550 | None:intergenic | 35.0% | |
GTTGTATCCATAATCAGTTG+TGG | - | chr1_2:6056672-6056691 | None:intergenic | 35.0% | |
GTTTATGACACATCAGAAGA+AGG | - | chr1_2:6056711-6056730 | None:intergenic | 35.0% | |
CTTGAATTCACCAGAGATAA+AGG | + | chr1_2:6056733-6056752 | Msa0051890:three_prime_UTR | 35.0% | |
! | ACACTACATTAGGTTGTTTG+TGG | + | chr1_2:6056830-6056849 | Msa0051890:three_prime_UTR | 35.0% |
TTGTGGTACAATTAGCAACA+CGG | + | chr1_2:6056847-6056866 | Msa0051890:three_prime_UTR | 35.0% | |
TATTAGCAAACAAGCCCTAA+TGG | - | chr1_2:6054932-6054951 | None:intergenic | 35.0% | |
! | TTAGGGCTTGTTTGCTAATA+CGG | + | chr1_2:6054932-6054951 | Msa0051890:intron | 35.0% |
CAACACTTGACAATTTGACA+TGG | - | chr1_2:6055735-6055754 | None:intergenic | 35.0% | |
! | GTTGATGAAACAAAAGGCTA+AGG | + | chr1_2:6055754-6055773 | Msa0051890:intron | 35.0% |
!!! | CTTATTTTGGTAAGCTCTTC+AGG | + | chr1_2:6055889-6055908 | Msa0051890:intron | 35.0% |
GATGATCCAAATTGAGTCAT+AGG | - | chr1_2:6056073-6056092 | None:intergenic | 35.0% | |
! | TAATGGACCTATAGTCACTT+TGG | - | chr1_2:6056203-6056222 | None:intergenic | 35.0% |
ATAGGTCCATTATTCCATCA+TGG | + | chr1_2:6056211-6056230 | Msa0051890:intron | 35.0% | |
CAGATGTTAATGGTGAGAAA+TGG | + | chr1_2:6056269-6056288 | Msa0051890:intron | 35.0% | |
TGAGTTGTTCAATCTTGATG+AGG | + | chr1_2:6056352-6056371 | Msa0051890:CDS | 35.0% | |
GAGTTGTTCAATCTTGATGA+GGG | + | chr1_2:6056353-6056372 | Msa0051890:CDS | 35.0% | |
AATCTTGATGAGGGTAATAG+TGG | + | chr1_2:6056362-6056381 | Msa0051890:CDS | 35.0% | |
AATATTCATTGTTAGCAGGC+GGG | - | chr1_2:6056415-6056434 | None:intergenic | 35.0% | |
GCGAAATATTCATTGTTAGC+AGG | - | chr1_2:6056419-6056438 | None:intergenic | 35.0% | |
TCAATCTGTAATCATACCCT+CGG | + | chr1_2:6056481-6056500 | Msa0051890:CDS | 35.0% | |
AGAGGTTTGAAAACTTGATG+AGG | - | chr1_2:6056531-6056550 | None:intergenic | 35.0% | |
GTTGTATCCATAATCAGTTG+TGG | - | chr1_2:6056672-6056691 | None:intergenic | 35.0% | |
GTTTATGACACATCAGAAGA+AGG | - | chr1_2:6056711-6056730 | None:intergenic | 35.0% | |
CTTGAATTCACCAGAGATAA+AGG | + | chr1_2:6056733-6056752 | Msa0051890:three_prime_UTR | 35.0% | |
! | ACACTACATTAGGTTGTTTG+TGG | + | chr1_2:6056830-6056849 | Msa0051890:three_prime_UTR | 35.0% |
TTGTGGTACAATTAGCAACA+CGG | + | chr1_2:6056847-6056866 | Msa0051890:three_prime_UTR | 35.0% | |
AATCAGGAGGAACAAGTGAT+GGG | - | chr1_2:6054673-6054692 | None:intergenic | 40.0% | |
TTGGAGAAGTCTTGAGAATC+AGG | - | chr1_2:6054689-6054708 | None:intergenic | 40.0% | |
AAGAAGATGGATCCATGAGT+TGG | - | chr1_2:6054721-6054740 | None:intergenic | 40.0% | |
!! | TAAGAGATGGTGGAAGGATT+AGG | - | chr1_2:6054776-6054795 | None:intergenic | 40.0% |
AAGAAGAGAAATGAGGAGGA+GGG | - | chr1_2:6054799-6054818 | None:intergenic | 40.0% | |
GAAGAGGAAGAAGAGAAATG+AGG | - | chr1_2:6054806-6054825 | None:intergenic | 40.0% | |
GATATATACCTGAGCAGAAG+AGG | - | chr1_2:6054822-6054841 | None:intergenic | 40.0% | |
TTCAGAGTTGCCATCATCAA+AGG | + | chr1_2:6055191-6055210 | Msa0051890:CDS | 40.0% | |
! | CTTCTCTTTGAAGAAGAACG+TGG | - | chr1_2:6055228-6055247 | None:intergenic | 40.0% |
AATGAATGGAACAGAGAAGG+AGG | + | chr1_2:6055359-6055378 | Msa0051890:intron | 40.0% | |
ACAAAAGGCTAAGGTTTGTC+CGG | + | chr1_2:6055763-6055782 | Msa0051890:intron | 40.0% | |
ATTGAGTCATAGGTCGAGTT+TGG | - | chr1_2:6056063-6056082 | None:intergenic | 40.0% | |
ACTCGACCTATGACTCAATT+TGG | + | chr1_2:6056064-6056083 | Msa0051890:intron | 40.0% | |
CTGAGCTTCACAATTAGCTA+AGG | + | chr1_2:6056103-6056122 | Msa0051890:intron | 40.0% | |
TTGCATCCAATGTCGTTATC+AGG | + | chr1_2:6056299-6056318 | Msa0051890:CDS | 40.0% | |
AGATTGAACAACTCAGTCTG+AGG | - | chr1_2:6056347-6056366 | None:intergenic | 40.0% | |
ATATTCATTGTTAGCAGGCG+GGG | - | chr1_2:6056414-6056433 | None:intergenic | 40.0% | |
TTTGACATGCTGCATTGTTC+TGG | - | chr1_2:6056461-6056480 | None:intergenic | 40.0% | |
CAACATGCCACAACTGATTA+TGG | + | chr1_2:6056662-6056681 | Msa0051890:CDS | 40.0% | |
AATCAGGAGGAACAAGTGAT+GGG | - | chr1_2:6054673-6054692 | None:intergenic | 40.0% | |
TTGGAGAAGTCTTGAGAATC+AGG | - | chr1_2:6054689-6054708 | None:intergenic | 40.0% | |
AAGAAGATGGATCCATGAGT+TGG | - | chr1_2:6054721-6054740 | None:intergenic | 40.0% | |
!! | TAAGAGATGGTGGAAGGATT+AGG | - | chr1_2:6054776-6054795 | None:intergenic | 40.0% |
AAGAAGAGAAATGAGGAGGA+GGG | - | chr1_2:6054799-6054818 | None:intergenic | 40.0% | |
GAAGAGGAAGAAGAGAAATG+AGG | - | chr1_2:6054806-6054825 | None:intergenic | 40.0% | |
GATATATACCTGAGCAGAAG+AGG | - | chr1_2:6054822-6054841 | None:intergenic | 40.0% | |
TTCAGAGTTGCCATCATCAA+AGG | + | chr1_2:6055191-6055210 | Msa0051890:CDS | 40.0% | |
! | CTTCTCTTTGAAGAAGAACG+TGG | - | chr1_2:6055228-6055247 | None:intergenic | 40.0% |
AATGAATGGAACAGAGAAGG+AGG | + | chr1_2:6055359-6055378 | Msa0051890:intron | 40.0% | |
ACAAAAGGCTAAGGTTTGTC+CGG | + | chr1_2:6055763-6055782 | Msa0051890:intron | 40.0% | |
ATTGAGTCATAGGTCGAGTT+TGG | - | chr1_2:6056063-6056082 | None:intergenic | 40.0% | |
ACTCGACCTATGACTCAATT+TGG | + | chr1_2:6056064-6056083 | Msa0051890:intron | 40.0% | |
CTGAGCTTCACAATTAGCTA+AGG | + | chr1_2:6056103-6056122 | Msa0051890:intron | 40.0% | |
TTGCATCCAATGTCGTTATC+AGG | + | chr1_2:6056299-6056318 | Msa0051890:CDS | 40.0% | |
AGATTGAACAACTCAGTCTG+AGG | - | chr1_2:6056347-6056366 | None:intergenic | 40.0% | |
ATATTCATTGTTAGCAGGCG+GGG | - | chr1_2:6056414-6056433 | None:intergenic | 40.0% | |
TTTGACATGCTGCATTGTTC+TGG | - | chr1_2:6056461-6056480 | None:intergenic | 40.0% | |
CAACATGCCACAACTGATTA+TGG | + | chr1_2:6056662-6056681 | Msa0051890:CDS | 40.0% | |
!! | GAACAAGTGATGGGTGTGTT+TGG | - | chr1_2:6054664-6054683 | None:intergenic | 45.0% |
GAATCAGGAGGAACAAGTGA+TGG | - | chr1_2:6054674-6054693 | None:intergenic | 45.0% | |
GAGAAGTCTTGAGAATCAGG+AGG | - | chr1_2:6054686-6054705 | None:intergenic | 45.0% | |
GTGGAAGGATTAGGAGGATA+GGG | - | chr1_2:6054767-6054786 | None:intergenic | 45.0% | |
GAAGAAGAGAAATGAGGAGG+AGG | - | chr1_2:6054800-6054819 | None:intergenic | 45.0% | |
GAGGAAGAAGAGAAATGAGG+AGG | - | chr1_2:6054803-6054822 | None:intergenic | 45.0% | |
GCAGAAACAAGCTCGTGATT+TGG | - | chr1_2:6054967-6054986 | None:intergenic | 45.0% | |
TTGAAGAAGAACGTGGTGGT+GGG | - | chr1_2:6055221-6055240 | None:intergenic | 45.0% | |
TTTGAAGAAGAACGTGGTGG+TGG | - | chr1_2:6055222-6055241 | None:intergenic | 45.0% | |
! | CTCTTTGAAGAAGAACGTGG+TGG | - | chr1_2:6055225-6055244 | None:intergenic | 45.0% |
CATAGGTCGAGTTTGGACTT+CGG | - | chr1_2:6056056-6056075 | None:intergenic | 45.0% | |
CATCCAATGTCGTTATCAGG+AGG | + | chr1_2:6056302-6056321 | Msa0051890:CDS | 45.0% | |
! | GATCCTCCTGATAACGACAT+TGG | - | chr1_2:6056308-6056327 | None:intergenic | 45.0% |
TCAGTCTGAGGAAACATCGT+AGG | - | chr1_2:6056335-6056354 | None:intergenic | 45.0% | |
GAAGCTAAATTTGTCGCCGA+GGG | - | chr1_2:6056500-6056519 | None:intergenic | 45.0% | |
TGAAGCTAAATTTGTCGCCG+AGG | - | chr1_2:6056501-6056520 | None:intergenic | 45.0% | |
TCAGTTGTGGCATGTTGTTG+TGG | - | chr1_2:6056659-6056678 | None:intergenic | 45.0% | |
!! | GAACAAGTGATGGGTGTGTT+TGG | - | chr1_2:6054664-6054683 | None:intergenic | 45.0% |
GAATCAGGAGGAACAAGTGA+TGG | - | chr1_2:6054674-6054693 | None:intergenic | 45.0% | |
GAGAAGTCTTGAGAATCAGG+AGG | - | chr1_2:6054686-6054705 | None:intergenic | 45.0% | |
GTGGAAGGATTAGGAGGATA+GGG | - | chr1_2:6054767-6054786 | None:intergenic | 45.0% | |
GAAGAAGAGAAATGAGGAGG+AGG | - | chr1_2:6054800-6054819 | None:intergenic | 45.0% | |
GAGGAAGAAGAGAAATGAGG+AGG | - | chr1_2:6054803-6054822 | None:intergenic | 45.0% | |
GCAGAAACAAGCTCGTGATT+TGG | - | chr1_2:6054967-6054986 | None:intergenic | 45.0% | |
TTGAAGAAGAACGTGGTGGT+GGG | - | chr1_2:6055221-6055240 | None:intergenic | 45.0% | |
TTTGAAGAAGAACGTGGTGG+TGG | - | chr1_2:6055222-6055241 | None:intergenic | 45.0% | |
! | CTCTTTGAAGAAGAACGTGG+TGG | - | chr1_2:6055225-6055244 | None:intergenic | 45.0% |
CATAGGTCGAGTTTGGACTT+CGG | - | chr1_2:6056056-6056075 | None:intergenic | 45.0% | |
CATCCAATGTCGTTATCAGG+AGG | + | chr1_2:6056302-6056321 | Msa0051890:CDS | 45.0% | |
! | GATCCTCCTGATAACGACAT+TGG | - | chr1_2:6056308-6056327 | None:intergenic | 45.0% |
TCAGTCTGAGGAAACATCGT+AGG | - | chr1_2:6056335-6056354 | None:intergenic | 45.0% | |
GAAGCTAAATTTGTCGCCGA+GGG | - | chr1_2:6056500-6056519 | None:intergenic | 45.0% | |
TGAAGCTAAATTTGTCGCCG+AGG | - | chr1_2:6056501-6056520 | None:intergenic | 45.0% | |
TCAGTTGTGGCATGTTGTTG+TGG | - | chr1_2:6056659-6056678 | None:intergenic | 45.0% | |
GGTGGAAGGATTAGGAGGAT+AGG | - | chr1_2:6054768-6054787 | None:intergenic | 50.0% | |
!! | GAGATGGTGGAAGGATTAGG+AGG | - | chr1_2:6054773-6054792 | None:intergenic | 50.0% |
ATGAGGAGGAGGGTAAGAGA+TGG | - | chr1_2:6054789-6054808 | None:intergenic | 50.0% | |
CTCTTCTTCCTCTTCTGCTC+AGG | + | chr1_2:6054811-6054830 | Msa0051890:CDS | 50.0% | |
! | TGAAGAAGAACGTGGTGGTG+GGG | - | chr1_2:6055220-6055239 | None:intergenic | 50.0% |
TGTCGTTATCAGGAGGATCG+CGG | + | chr1_2:6056309-6056328 | Msa0051890:CDS | 50.0% | |
GGTGGAAGGATTAGGAGGAT+AGG | - | chr1_2:6054768-6054787 | None:intergenic | 50.0% | |
!! | GAGATGGTGGAAGGATTAGG+AGG | - | chr1_2:6054773-6054792 | None:intergenic | 50.0% |
ATGAGGAGGAGGGTAAGAGA+TGG | - | chr1_2:6054789-6054808 | None:intergenic | 50.0% | |
CTCTTCTTCCTCTTCTGCTC+AGG | + | chr1_2:6054811-6054830 | Msa0051890:CDS | 50.0% | |
! | TGAAGAAGAACGTGGTGGTG+GGG | - | chr1_2:6055220-6055239 | None:intergenic | 50.0% |
TGTCGTTATCAGGAGGATCG+CGG | + | chr1_2:6056309-6056328 | Msa0051890:CDS | 50.0% | |
!! | GGAGGGTAAGAGATGGTGGA+AGG | - | chr1_2:6054782-6054801 | None:intergenic | 55.0% |
AGGAGGAGGGTAAGAGATGG+TGG | - | chr1_2:6054786-6054805 | None:intergenic | 55.0% | |
!! | GGAGGGTAAGAGATGGTGGA+AGG | - | chr1_2:6054782-6054801 | None:intergenic | 55.0% |
AGGAGGAGGGTAAGAGATGG+TGG | - | chr1_2:6054786-6054805 | None:intergenic | 55.0% | |
GGTGGGGCAGCCTTTGATGA+TGG | - | chr1_2:6055204-6055223 | None:intergenic | 60.0% | |
GGTGGGGCAGCCTTTGATGA+TGG | - | chr1_2:6055204-6055223 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_2 | gene | 6054632 | 6056964 | 6054632 | ID=Msa0051890;Name=Msa0051890 |
chr1_2 | mRNA | 6054632 | 6056964 | 6054632 | ID=Msa0051890-mRNA-1;Parent=Msa0051890;Name=Msa0051890-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.8|0.66|1|1|1|6|236|267 |
chr1_2 | exon | 6054632 | 6054832 | 6054632 | ID=Msa0051890-mRNA-1:exon:1934;Parent=Msa0051890-mRNA-1 |
chr1_2 | exon | 6055180 | 6055281 | 6055180 | ID=Msa0051890-mRNA-1:exon:1935;Parent=Msa0051890-mRNA-1 |
chr1_2 | exon | 6055373 | 6055438 | 6055373 | ID=Msa0051890-mRNA-1:exon:1936;Parent=Msa0051890-mRNA-1 |
chr1_2 | exon | 6055575 | 6055640 | 6055575 | ID=Msa0051890-mRNA-1:exon:1937;Parent=Msa0051890-mRNA-1 |
chr1_2 | exon | 6056272 | 6056556 | 6056272 | ID=Msa0051890-mRNA-1:exon:1938;Parent=Msa0051890-mRNA-1 |
chr1_2 | exon | 6056645 | 6056964 | 6056645 | ID=Msa0051890-mRNA-1:exon:1939;Parent=Msa0051890-mRNA-1 |
chr1_2 | CDS | 6054632 | 6054832 | 6054632 | ID=Msa0051890-mRNA-1:cds;Parent=Msa0051890-mRNA-1 |
chr1_2 | CDS | 6055180 | 6055281 | 6055180 | ID=Msa0051890-mRNA-1:cds;Parent=Msa0051890-mRNA-1 |
chr1_2 | CDS | 6055373 | 6055438 | 6055373 | ID=Msa0051890-mRNA-1:cds;Parent=Msa0051890-mRNA-1 |
chr1_2 | CDS | 6055575 | 6055640 | 6055575 | ID=Msa0051890-mRNA-1:cds;Parent=Msa0051890-mRNA-1 |
chr1_2 | CDS | 6056272 | 6056556 | 6056272 | ID=Msa0051890-mRNA-1:cds;Parent=Msa0051890-mRNA-1 |
chr1_2 | CDS | 6056645 | 6056728 | 6056645 | ID=Msa0051890-mRNA-1:cds;Parent=Msa0051890-mRNA-1 |
chr1_2 | three_prime_UTR | 6056729 | 6056964 | 6056729 | ID=Msa0051890-mRNA-1:three_prime_utr;Parent=Msa0051890-mRNA-1 |
Gene Sequence |
Protein sequence |