AlfalfaGEDB | Msa0051890

M. sativa cultivar zhongmu-4 / Msa0051890

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0007623 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009639 GO:0009791 GO:0009889 GO:0009908 GO:0010029 GO:0010114 GO:0010154 GO:0010187 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048511 GO:0048519 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1900140 GO:1903506 GO:2000026 GO:2000112 GO:2001141
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0051890	XP_003589168.2	95.522	268	10	2	1	267	1	267	7.32e-175	493

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0051890	sp\|Q9FUA4\|SPT_ARATH	83.562	73	12	0	90	162	196	268	5.18e-34	129

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0051890	G7I3I4	95.522	268	10	2	1	267	1	267	3.50e-175	493

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TFs/TRs:

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Gene ID	Type	Classification
Msa0051890	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0051890	Msa0096880	0.910215	2.403220e-82	-8.615850e-47
Msa0051890	Msa0144870	0.946452	4.495856e-105	-8.615850e-47
Msa0051890	Msa1441050	0.957690	1.475393e-115	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0051890	MtrunA17_Chr1g0153241	95.522	268	10	2	1	267	1	267	6.73e-179	493
Msa0051890	MtrunA17_Chr1g0153751	94.792	96	4	1	146	240	1	96	2.09e-60	186
Msa0051890	MtrunA17_Chr5g0402031	74.725	91	18	2	94	182	114	201	2.77e-34	126
Msa0051890	MtrunA17_Chr7g0262691	62.637	91	29	1	85	175	252	337	3.90e-29	114
Msa0051890	MtrunA17_Chr1g0193321	61.538	91	35	0	85	175	462	552	1.76e-28	114
Msa0051890	MtrunA17_Chr1g0182791	62.637	91	23	1	85	175	317	396	1.82e-28	113
Msa0051890	MtrunA17_Chr3g0095391	57.000	100	39	2	65	162	287	384	1.01e-26	108
Msa0051890	MtrunA17_Chr7g0231461	70.968	62	18	0	86	147	298	359	2.86e-23	98.6
Msa0051890	MtrunA17_Chr7g0271251	56.667	90	35	1	85	170	432	521	2.97e-22	95.9
Msa0051890	MtrunA17_Chr7g0270871	56.098	82	34	2	68	147	183	264	9.05e-20	87.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0051890	AT4G36930.1	83.562	73	12	0	90	162	196	268	5.27e-35	129
Msa0051890	AT5G67110.1	47.590	166	72	4	5	160	2	162	1.15e-34	124
Msa0051890	AT1G09530.3	62.105	95	26	2	78	170	328	414	1.07e-28	114
Msa0051890	AT1G09530.2	62.105	95	26	2	78	170	328	414	1.07e-28	114
Msa0051890	AT1G09530.5	62.105	95	26	2	78	170	328	414	1.07e-28	114
Msa0051890	AT1G09530.1	62.105	95	26	2	78	170	328	414	1.07e-28	114
Msa0051890	AT1G09530.4	62.105	95	26	2	78	170	328	414	1.07e-28	114
Msa0051890	AT1G09530.6	62.105	95	26	2	78	170	328	414	1.07e-28	114
Msa0051890	AT2G20180.7	73.016	63	17	0	85	147	207	269	9.39e-26	105
Msa0051890	AT2G20180.1	73.016	63	17	0	85	147	207	269	9.39e-26	105

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Find 70 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATATTCATTGTTAGCAGG+CGG	0.584130	1_2:-6056413	None:intergenic
AACTGATTATGGATACAACA+AGG	0.695121	1_2:+6056673	Msa0051890:CDS
AAGAAGAGAAATGAGGAGGA+GGG	0.533296	1_2:-6054796	None:intergenic
AAGAAGATGGATCCATGAGT+TGG	0.625627	1_2:-6054718	None:intergenic
AAGAATTCATCAATTAGAAA+AGG	0.474846	1_2:+6056913	Msa0051890:three_prime_UTR
AAGCTGCTTTAAATATTCAA+TGG	0.465998	1_2:-6055603	None:intergenic
AATATTCATTGTTAGCAGGC+GGG	0.525894	1_2:-6056412	None:intergenic
AATCAGGAGGAACAAGTGAT+GGG	0.615697	1_2:-6054670	None:intergenic
AATCTTGATGAGGGTAATAG+TGG	0.470391	1_2:+6056362	Msa0051890:CDS
AATGAATGGAACAGAGAAGG+AGG	0.550832	1_2:+6055359	Msa0051890:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAATTTATTCAACCAACTCA+TGG	+	chr1_2:6054706-6054725	Msa0051890:CDS	30.0%
TTGAAAGATGATGAAGAAGA+TGG	-	chr1_2:6054734-6054753	None:intergenic	30.0%
TAACTTTATCTTGCACCATT+AGG	+	chr1_2:6054914-6054933	Msa0051890:intron	30.0%
AACTTTATCTTGCACCATTA+GGG	+	chr1_2:6054915-6054934	Msa0051890:intron	30.0%
TAAGTGCATGTTTGATATCA+CGG	-	chr1_2:6054995-6055014	None:intergenic	30.0%
TTTAATGAATGGAACAGAGA+AGG	+	chr1_2:6055356-6055375	Msa0051890:intron	30.0%
TACATCACCTTGTTAGAATT+TGG	-	chr1_2:6055427-6055446	None:intergenic	30.0%
TAAAGCTTCAATGTTAGATG+AGG	+	chr1_2:6055580-6055599	Msa0051890:CDS	30.0%
TTGACAATTTGACATGGTTA+AGG	-	chr1_2:6055729-6055748	None:intergenic	30.0%
TAAGCGTAAATAAGTCAATC+CGG	-	chr1_2:6055785-6055804	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	6054632	6056964	6054632	ID=Msa0051890;Name=Msa0051890
chr1_2	mRNA	6054632	6056964	6054632	ID=Msa0051890-mRNA-1;Parent=Msa0051890;Name=Msa0051890-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0\|0.8\|0.66\|1\|1\|1\|6\|236\|267
chr1_2	exon	6054632	6054832	6054632	ID=Msa0051890-mRNA-1:exon:1934;Parent=Msa0051890-mRNA-1
chr1_2	exon	6055180	6055281	6055180	ID=Msa0051890-mRNA-1:exon:1935;Parent=Msa0051890-mRNA-1
chr1_2	exon	6055373	6055438	6055373	ID=Msa0051890-mRNA-1:exon:1936;Parent=Msa0051890-mRNA-1
chr1_2	exon	6055575	6055640	6055575	ID=Msa0051890-mRNA-1:exon:1937;Parent=Msa0051890-mRNA-1
chr1_2	exon	6056272	6056556	6056272	ID=Msa0051890-mRNA-1:exon:1938;Parent=Msa0051890-mRNA-1
chr1_2	exon	6056645	6056964	6056645	ID=Msa0051890-mRNA-1:exon:1939;Parent=Msa0051890-mRNA-1
chr1_2	CDS	6054632	6054832	6054632	ID=Msa0051890-mRNA-1:cds;Parent=Msa0051890-mRNA-1
chr1_2	CDS	6055180	6055281	6055180	ID=Msa0051890-mRNA-1:cds;Parent=Msa0051890-mRNA-1
chr1_2	CDS	6055373	6055438	6055373	ID=Msa0051890-mRNA-1:cds;Parent=Msa0051890-mRNA-1
chr1_2	CDS	6055575	6055640	6055575	ID=Msa0051890-mRNA-1:cds;Parent=Msa0051890-mRNA-1
chr1_2	CDS	6056272	6056556	6056272	ID=Msa0051890-mRNA-1:cds;Parent=Msa0051890-mRNA-1
chr1_2	CDS	6056645	6056728	6056645	ID=Msa0051890-mRNA-1:cds;Parent=Msa0051890-mRNA-1
chr1_2	three_prime_UTR	6056729	6056964	6056729	ID=Msa0051890-mRNA-1:three_prime_utr;Parent=Msa0051890-mRNA-1

Gene Sequence

>Msa0051890

ATGGCTGGTTCTTCTGATGATGATATACACCAAACACACCCATCACTTGTTCCTCCTGATTCTCAAGACTTCTCCAATTTATTCAACCAACTCATGGATCCATCTTCTTCATCATCTTTCAATTTTTCTGATCCCTATCCTCCTAATCCTTCCACCATCTCTTACCCTCCTCCTCATTTCTCTTCTTCCTCTTCTGCTCAGAATGATGAAGGTTCAGAGTTGCCATCATCAAAGGCTGCCCCACCACCACGTTCTTCTTCAAAGAGAAGCAGAGCTGCAGAGTTCCATAATTTGTCTGAAAAGAGAAGGAGGAGTAAGATTAATGAGAAATTGAAAGCTTTACAAAATTTAATTCCAAATTCTAACAAGACAGATAAAGCTTCAATGTTAGATGAGGCCATTGAATATTTAAAGCAGCTTCAGCTTCAAGTGCAAATGTTAATGGTGAGAAATGGTTATAGCTTGCATCCAATGTCGTTATCAGGAGGATCGCGGCCTACGATGTTTCCTCAGACTGAGTTGTTCAATCTTGATGAGGGTAATAGTGGATTTCACAATTCTAACAATGCAATTACCCCGCCTGCTAACAATGAATATTTCGCACGGCAAGCTTTTAGTTTTCCAGAACAATGCAGCATGTCAAATCAATCTGTAATCATACCCTCGGCGACAAATTTAGCTTCATTTGATACCTCATCAAGTTTTCAAACCTCTATTAAGGATGTTTTCAGCCACAACAACATGCCACAACTGATTATGGATACAACAAGGATTGGAAAAACTCCTTCTTCTGATGTGTCATAA

Protein sequence

>Msa0051890

MAGSSDDDIHQTHPSLVPPDSQDFSNLFNQLMDPSSSSSFNFSDPYPPNPSTISYPPPHFSSSSSAQNDEGSELPSSKAAPPPRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMVRNGYSLHPMSLSGGSRPTMFPQTELFNLDEGNSGFHNSNNAITPPANNEYFARQAFSFPEQCSMSNQSVIIPSATNLASFDTSSSFQTSIKDVFSHNNMPQLIMDTTRIGKTPSSDVS*