AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0096880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0096880 MtrunA17_Chr1g0153241 95.522 268 10 2 1 267 1 267 6.73e-179 493
Msa0096880 MtrunA17_Chr1g0153751 94.792 96 4 1 146 240 1 96 2.09e-60 186
Msa0096880 MtrunA17_Chr5g0402031 74.725 91 18 2 94 182 114 201 2.77e-34 126
Msa0096880 MtrunA17_Chr7g0262691 62.637 91 29 1 85 175 252 337 3.90e-29 114
Msa0096880 MtrunA17_Chr1g0193321 61.538 91 35 0 85 175 462 552 1.76e-28 114
Msa0096880 MtrunA17_Chr1g0182791 62.637 91 23 1 85 175 317 396 1.82e-28 113
Msa0096880 MtrunA17_Chr3g0095391 57.000 100 39 2 65 162 287 384 1.01e-26 108
Msa0096880 MtrunA17_Chr7g0231461 70.968 62 18 0 86 147 298 359 2.86e-23 98.6
Msa0096880 MtrunA17_Chr7g0271251 56.667 90 35 1 85 170 432 521 2.97e-22 95.9
Msa0096880 MtrunA17_Chr7g0270871 56.098 82 34 2 68 147 183 264 9.05e-20 87.8
Msa0096880 MtrunA17_Chr4g0074161 40.146 137 78 3 20 152 138 274 1.28e-19 87.4
Msa0096880 MtrunA17_Chr1g0190731 46.835 79 36 1 75 147 177 255 4.44e-17 79.7
Msa0096880 MtrunA17_Chr5g0393721 37.615 109 61 1 54 162 200 301 4.33e-16 76.6
Msa0096880 MtrunA17_Chr3g0134741 39.241 79 48 0 84 162 228 306 4.60e-14 70.9
Msa0096880 MtrunA17_Chr1g0207311 37.500 80 45 1 88 162 194 273 1.22e-13 69.3
Msa0096880 MtrunA17_Chr6g0484271 44.304 79 43 1 73 150 143 221 1.51e-13 68.9
Msa0096880 MtrunA17_Chr7g0234761 39.560 91 47 2 68 150 293 383 4.89e-13 68.6
Msa0096880 MtrunA17_Chr8g0365941 40.000 95 51 2 62 150 277 371 6.44e-13 68.2
Msa0096880 MtrunA17_Chr1g0207301 43.548 62 35 0 101 162 304 365 9.38e-13 67.4
Msa0096880 MtrunA17_Chr3g0144641 47.692 65 33 1 87 150 193 257 1.03e-12 67.4
Msa0096880 MtrunA17_Chr4g0035101 42.353 85 47 2 64 147 123 206 1.10e-12 67.0
Msa0096880 MtrunA17_Chr8g0339091 47.692 65 33 1 87 150 293 357 2.14e-12 66.6
Msa0096880 MtrunA17_Chr1g0152131 46.154 65 34 1 87 150 262 326 2.62e-12 66.2
Msa0096880 MtrunA17_Chr1g0152651 35.052 97 58 1 63 159 257 348 3.24e-12 65.9
Msa0096880 MtrunA17_Chr8g0363921 44.615 65 35 1 87 150 153 217 3.40e-12 65.1
Msa0096880 MtrunA17_Chr5g0415291 37.000 100 51 3 63 150 79 178 7.88e-12 63.5
Msa0096880 MtrunA17_Chr5g0421111 46.154 65 34 1 87 150 367 431 1.20e-11 64.3
Msa0096880 MtrunA17_Chr1g0185621 51.786 56 27 0 96 151 476 531 1.22e-11 64.7
Msa0096880 MtrunA17_Chr3g0131771 45.205 73 38 2 87 158 149 220 1.56e-11 63.5
Msa0096880 MtrunA17_Chr5g0435021 30.496 141 83 4 21 147 141 280 3.23e-11 62.4
Msa0096880 MtrunA17_Chr1g0184841 42.697 89 44 2 71 152 100 188 3.50e-11 62.4
Msa0096880 MtrunA17_Chr8g0386921 48.077 52 27 0 96 147 407 458 8.23e-11 62.0
Msa0096880 MtrunA17_Chr2g0320291 33.028 109 62 3 46 147 81 185 9.11e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0096880 AT4G36930.1 83.562 73 12 0 90 162 196 268 5.27e-35 129
Msa0096880 AT5G67110.1 47.590 166 72 4 5 160 2 162 1.15e-34 124
Msa0096880 AT1G09530.3 62.105 95 26 2 78 170 328 414 1.07e-28 114
Msa0096880 AT1G09530.2 62.105 95 26 2 78 170 328 414 1.07e-28 114
Msa0096880 AT1G09530.5 62.105 95 26 2 78 170 328 414 1.07e-28 114
Msa0096880 AT1G09530.1 62.105 95 26 2 78 170 328 414 1.07e-28 114
Msa0096880 AT1G09530.4 62.105 95 26 2 78 170 328 414 1.07e-28 114
Msa0096880 AT1G09530.6 62.105 95 26 2 78 170 328 414 1.07e-28 114
Msa0096880 AT2G20180.7 73.016 63 17 0 85 147 207 269 9.39e-26 105
Msa0096880 AT2G20180.1 73.016 63 17 0 85 147 207 269 9.39e-26 105
Msa0096880 AT2G20180.5 73.016 63 17 0 85 147 207 269 9.39e-26 105
Msa0096880 AT2G20180.4 73.016 63 17 0 85 147 278 340 2.61e-25 104
Msa0096880 AT2G20180.6 73.016 63 17 0 85 147 278 340 2.61e-25 104
Msa0096880 AT2G20180.2 73.016 63 17 0 85 147 278 340 2.61e-25 104
Msa0096880 AT2G20180.3 73.016 63 17 0 85 147 278 340 2.61e-25 104
Msa0096880 AT2G20180.8 67.143 70 23 0 77 146 270 339 3.68e-25 102
Msa0096880 AT4G00050.2 65.714 70 24 0 78 147 98 167 4.30e-24 99.0
Msa0096880 AT4G00050.3 65.714 70 24 0 78 147 200 269 9.43e-24 99.4
Msa0096880 AT4G00050.1 65.714 70 24 0 78 147 200 269 1.36e-23 99.0
Msa0096880 AT4G28800.1 54.762 84 37 1 85 168 249 331 1.64e-21 93.6
Msa0096880 AT4G28800.2 64.062 64 23 0 85 148 261 324 8.94e-21 91.7
Msa0096880 AT2G46970.3 37.956 137 69 2 68 190 184 318 1.04e-20 90.9
Msa0096880 AT2G46970.2 37.956 137 69 2 68 190 175 309 1.05e-20 90.9
Msa0096880 AT4G28815.2 59.375 64 26 0 85 148 68 131 1.13e-20 88.2
Msa0096880 AT2G46970.1 37.956 137 69 2 68 190 206 340 1.36e-20 90.9
Msa0096880 AT4G28815.1 59.375 64 26 0 85 148 144 207 3.75e-20 88.2
Msa0096880 AT4G28790.1 65.079 63 22 0 85 147 271 333 3.95e-20 89.4
Msa0096880 AT3G59060.1 54.651 86 36 1 85 170 250 332 5.28e-20 89.4
Msa0096880 AT3G59060.3 54.651 86 36 1 85 170 250 332 5.60e-20 89.4
Msa0096880 AT3G59060.2 54.651 86 36 1 85 170 250 332 5.60e-20 89.4
Msa0096880 AT3G59060.4 54.651 86 36 1 85 170 250 332 5.60e-20 89.4
Msa0096880 AT2G24260.2 55.556 72 28 1 80 147 26 97 6.91e-20 86.3
Msa0096880 AT4G28790.2 62.121 66 25 0 85 150 271 336 1.09e-19 87.4
Msa0096880 AT2G43010.2 58.824 85 30 1 86 170 252 331 1.54e-19 87.8
Msa0096880 AT2G43010.4 58.824 85 30 1 86 170 252 331 1.55e-19 87.8
Msa0096880 AT5G58010.1 47.778 90 40 2 83 165 97 186 1.58e-19 86.3
Msa0096880 AT2G43010.1 58.824 85 30 1 86 170 252 331 1.59e-19 87.8
Msa0096880 AT2G43010.3 58.824 85 30 1 86 170 259 338 1.94e-19 87.4
Msa0096880 AT2G24260.1 54.430 79 31 2 79 152 128 206 2.34e-19 86.7
Msa0096880 AT2G43010.5 58.824 85 30 1 86 170 294 373 2.81e-19 87.4
Msa0096880 AT4G30980.1 45.652 92 45 2 62 152 111 198 5.16e-19 85.1
Msa0096880 AT4G30980.2 45.652 92 45 2 62 152 159 246 1.69e-18 84.3
Msa0096880 AT5G61270.2 47.826 92 46 1 59 150 48 137 5.16e-18 82.0
Msa0096880 AT5G61270.3 47.826 92 46 1 59 150 48 137 5.16e-18 82.0
Msa0096880 AT5G61270.1 47.826 92 46 1 59 150 136 225 9.39e-18 82.4
Msa0096880 AT3G62090.1 54.545 66 30 0 88 153 168 233 1.58e-15 75.9
Msa0096880 AT3G62090.2 51.429 70 34 0 84 153 181 250 1.79e-15 75.9
Msa0096880 AT5G67110.3 36.145 166 69 5 5 160 2 140 2.45e-15 72.8
Msa0096880 AT4G33880.1 36.449 107 61 1 63 162 237 343 3.49e-15 74.7
Msa0096880 AT1G27740.1 36.634 101 60 1 62 162 148 244 8.03e-15 72.8
Msa0096880 AT4G28811.1 63.492 63 23 0 85 147 351 413 2.89e-14 72.8
Msa0096880 AT2G14760.3 37.000 100 62 1 64 162 228 327 6.20e-14 71.2
Msa0096880 AT5G67110.2 35.211 142 77 4 6 137 3 139 1.10e-13 67.4
Msa0096880 AT5G50915.3 43.038 79 41 2 76 150 124 202 3.69e-13 68.2
Msa0096880 AT5G50915.4 43.038 79 41 2 76 150 124 202 3.69e-13 68.2
Msa0096880 AT5G50915.1 43.038 79 41 2 76 150 124 202 4.34e-13 68.2
Msa0096880 AT5G50915.2 43.038 79 41 2 76 150 124 202 4.34e-13 68.2
Msa0096880 AT2G14760.1 36.709 79 50 0 84 162 236 314 6.31e-13 68.2
Msa0096880 AT5G43175.1 28.571 133 94 1 31 162 77 209 7.34e-13 66.6
Msa0096880 AT5G48560.2 47.692 65 33 1 87 150 303 367 1.35e-12 67.8
Msa0096880 AT3G07340.2 47.692 65 33 1 87 150 260 324 1.38e-12 67.4
Msa0096880 AT3G07340.1 47.692 65 33 1 87 150 260 324 1.46e-12 67.4
Msa0096880 AT5G48560.1 47.692 65 33 1 87 150 303 367 1.63e-12 67.4
Msa0096880 AT1G68920.3 47.692 65 33 1 87 150 304 368 1.71e-12 67.4
Msa0096880 AT1G68920.1 47.692 65 33 1 87 150 305 369 1.78e-12 67.4
Msa0096880 AT1G68920.4 47.692 65 33 1 87 150 305 369 1.78e-12 67.4
Msa0096880 AT1G68920.2 47.692 65 33 1 87 150 305 369 1.78e-12 67.4
Msa0096880 AT5G62610.2 39.362 94 50 3 87 177 155 244 2.01e-12 66.2
Msa0096880 AT5G62610.1 39.362 94 50 3 87 177 155 244 2.01e-12 66.2
Msa0096880 AT4G36540.2 46.154 65 34 1 87 150 143 207 2.53e-12 66.2
Msa0096880 AT4G36540.1 46.154 65 34 1 87 150 143 207 2.54e-12 66.2
Msa0096880 AT1G73830.2 44.615 65 35 1 87 150 149 213 4.51e-12 65.1
Msa0096880 AT1G73830.1 44.615 65 35 1 87 150 149 213 4.87e-12 64.7
Msa0096880 AT2G18300.2 46.154 65 34 1 87 150 187 251 5.96e-12 65.5
Msa0096880 AT2G18300.1 46.154 65 34 1 87 150 187 251 6.14e-12 65.1
Msa0096880 AT1G10120.2 46.154 65 34 1 87 150 208 272 6.76e-12 65.1
Msa0096880 AT1G10120.1 46.154 65 34 1 87 150 208 272 6.76e-12 65.1
Msa0096880 AT3G23690.1 44.615 65 35 1 87 150 193 257 7.20e-12 65.1
Msa0096880 AT2G18300.3 46.154 65 34 1 87 150 187 251 7.37e-12 65.1
Msa0096880 AT1G26260.4 44.615 65 35 1 87 150 225 289 8.74e-12 65.1
Msa0096880 AT1G26260.1 44.615 65 35 1 87 150 225 289 8.74e-12 65.1
Msa0096880 AT1G26260.6 44.615 65 35 1 87 150 225 289 8.74e-12 65.1
Msa0096880 AT1G26260.2 44.615 65 35 1 87 150 225 289 8.74e-12 65.1
Msa0096880 AT1G59640.1 44.615 65 35 1 87 150 138 202 8.95e-12 64.3
Msa0096880 AT1G26260.5 44.615 65 35 1 87 150 203 267 9.23e-12 65.1
Msa0096880 AT1G26260.3 44.615 65 35 1 87 150 174 238 9.37e-12 64.7
Msa0096880 AT4G34530.1 43.077 65 36 1 87 150 174 238 1.06e-11 64.7
Msa0096880 AT1G59640.2 46.774 62 32 1 87 147 138 199 1.88e-11 63.9
Msa0096880 AT1G02340.2 56.000 50 21 1 99 147 134 183 1.99e-11 63.5
Msa0096880 AT1G02340.1 56.000 50 21 1 99 147 141 190 2.04e-11 63.5
Msa0096880 AT1G18400.2 43.077 65 36 1 87 150 147 211 2.29e-11 62.8
Msa0096880 AT1G18400.1 43.077 65 36 1 87 150 147 211 2.56e-11 62.8
Msa0096880 AT1G25330.1 44.615 65 35 1 87 150 106 170 3.09e-11 62.0
Msa0096880 AT1G63650.3 53.846 52 24 0 96 147 406 457 4.09e-11 63.5
Msa0096880 AT1G63650.1 53.846 52 24 0 96 147 406 457 4.09e-11 63.5
Msa0096880 AT1G63650.2 53.846 52 24 0 96 147 406 457 4.09e-11 63.5
Msa0096880 AT1G66470.1 43.056 72 36 1 76 147 191 257 4.89e-11 62.4
Msa0096880 AT1G03040.1 42.045 88 41 2 75 152 125 212 7.32e-11 62.0
Msa0096880 AT1G03040.2 30.769 182 92 5 75 235 120 288 7.38e-11 61.6
Msa0096880 AT2G22770.1 53.846 52 24 0 96 147 133 184 8.77e-11 61.6

Find 70 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACATCACCTTGTTAGAATT+TGG 0.111527 1_3:+2597147 None:intergenic
CATGAGTTGGTTGAATAAAT+TGG 0.211961 1_3:+2597868 None:intergenic
CAACATGCCACAACTGATTA+TGG 0.244370 1_3:-2595902 Msa0096880:CDS
ATTAATTCTGCAGATGTTAA+TGG 0.295896 1_3:-2596305 Msa0096880:intron
CTTGAATTCACCAGAGATAA+AGG 0.298355 1_3:-2595831 Msa0096880:three_prime_UTR
TTTGACATGCTGCATTGTTC+TGG 0.325901 1_3:+2596106 None:intergenic
CTCAAATTTGACACTACATT+AGG 0.351513 1_3:-2595744 Msa0096880:three_prime_UTR
CTCTTCTTCCTCTTCTGCTC+AGG 0.354272 1_3:-2597762 Msa0096880:intron
TAAGAGATGGTGGAAGGATT+AGG 0.357303 1_3:+2597800 None:intergenic
TTGGAGAAGTCTTGAGAATC+AGG 0.361248 1_3:+2597887 None:intergenic
GTTCCATAATTTGTCTGAAA+AGG 0.391347 1_3:-2597309 Msa0096880:intron
TTGCATCCAATGTCGTTATC+AGG 0.395094 1_3:-2596265 Msa0096880:CDS
GAACAAGTGATGGGTGTGTT+TGG 0.440894 1_3:+2597912 None:intergenic
AATGTTATTACAGTTATCAA+TGG 0.444309 1_3:+2595676 None:intergenic
AGGAGGAGGGTAAGAGATGG+TGG 0.449041 1_3:+2597790 None:intergenic
ACACTACATTAGGTTGTTTG+TGG 0.463808 1_3:-2595734 Msa0096880:three_prime_UTR
GCGAAATATTCATTGTTAGC+AGG 0.465887 1_3:+2596148 None:intergenic
AAGCTGCTTTAAATATTCAA+TGG 0.465998 1_3:+2596964 None:intergenic
AATCTTGATGAGGGTAATAG+TGG 0.470391 1_3:-2596202 Msa0096880:CDS
TTGAAAGATGATGAAGAAGA+TGG 0.470481 1_3:+2597842 None:intergenic
AAGAATTCATCAATTAGAAA+AGG 0.474846 1_3:-2595651 Msa0096880:three_prime_UTR
CAATTTATTCAACCAACTCA+TGG 0.476360 1_3:-2597867 Msa0096880:CDS
GGTGGGGCAGCCTTTGATGA+TGG 0.476408 1_3:+2597368 None:intergenic
GAAGAAGAGAAATGAGGAGG+AGG 0.480762 1_3:+2597776 None:intergenic
GGTGGAAGGATTAGGAGGAT+AGG 0.482360 1_3:+2597808 None:intergenic
TCAAACATGAACCTTAATAG+AGG 0.484571 1_3:+2596018 None:intergenic
TTTGAAGAAGAACGTGGTGG+TGG 0.492656 1_3:+2597350 None:intergenic
ATTATGGATACAACAAGGAT+TGG 0.493878 1_3:-2595886 Msa0096880:CDS
GGAGGGTAAGAGATGGTGGA+AGG 0.497229 1_3:+2597794 None:intergenic
GTGGAAGGATTAGGAGGATA+GGG 0.512443 1_3:+2597809 None:intergenic
AATATTCATTGTTAGCAGGC+GGG 0.525894 1_3:+2596152 None:intergenic
GATATATACCTGAGCAGAAG+AGG 0.528648 1_3:+2597754 None:intergenic
GAATCAGGAGGAACAAGTGA+TGG 0.531363 1_3:+2597902 None:intergenic
GAGATGGTGGAAGGATTAGG+AGG 0.532760 1_3:+2597803 None:intergenic
AAGAAGAGAAATGAGGAGGA+GGG 0.533296 1_3:+2597777 None:intergenic
ATGAGGAGGAGGGTAAGAGA+TGG 0.537204 1_3:+2597787 None:intergenic
TTGAAGAAGAACGTGGTGGT+GGG 0.545725 1_3:+2597351 None:intergenic
ATATTCATTGTTAGCAGGCG+GGG 0.547212 1_3:+2596153 None:intergenic
TTCAGAGTTGCCATCATCAA+AGG 0.550812 1_3:-2597378 Msa0096880:CDS
AATGAATGGAACAGAGAAGG+AGG 0.550832 1_3:-2597212 Msa0096880:intron
CAGATGTTAATGGTGAGAAA+TGG 0.552941 1_3:-2596295 Msa0096880:CDS
GAAGAGGAAGAAGAGAAATG+AGG 0.557122 1_3:+2597770 None:intergenic
ACAATAATAACAATAATGGC+TGG 0.560564 1_3:-2597956 None:intergenic
GTTTATGACACATCAGAAGA+AGG 0.583034 1_3:+2595856 None:intergenic
TGAAGAAGAACGTGGTGGTG+GGG 0.583658 1_3:+2597352 None:intergenic
TGAGTTGTTCAATCTTGATG+AGG 0.583812 1_3:-2596212 Msa0096880:CDS
AAATATTCATTGTTAGCAGG+CGG 0.584130 1_3:+2596151 None:intergenic
TCAATCTGTAATCATACCCT+CGG 0.590382 1_3:-2596083 Msa0096880:CDS
TCAGTTGTGGCATGTTGTTG+TGG 0.593873 1_3:+2595908 None:intergenic
TTTAATTCCAAATTCTAACA+AGG 0.599565 1_3:-2597154 Msa0096880:intron
GAGGAAGAAGAGAAATGAGG+AGG 0.607406 1_3:+2597773 None:intergenic
GAGTTGTTCAATCTTGATGA+GGG 0.608970 1_3:-2596211 Msa0096880:CDS
TAAAGCTTCAATGTTAGATG+AGG 0.610444 1_3:-2596987 Msa0096880:CDS
AGAGGTTTGAAAACTTGATG+AGG 0.611385 1_3:+2596036 None:intergenic
AATCAGGAGGAACAAGTGAT+GGG 0.615697 1_3:+2597903 None:intergenic
TGAAGCTAAATTTGTCGCCG+AGG 0.617569 1_3:+2596066 None:intergenic
GATCCTCCTGATAACGACAT+TGG 0.621566 1_3:+2596259 None:intergenic
AAGAAGATGGATCCATGAGT+TGG 0.625627 1_3:+2597855 None:intergenic
GTTGTATCCATAATCAGTTG+TGG 0.626275 1_3:+2595895 None:intergenic
CTTCTCTTTGAAGAAGAACG+TGG 0.628949 1_3:+2597344 None:intergenic
AGATTGAACAACTCAGTCTG+AGG 0.648355 1_3:+2596220 None:intergenic
CTCTTTGAAGAAGAACGTGG+TGG 0.649691 1_3:+2597347 None:intergenic
GAAGCTAAATTTGTCGCCGA+GGG 0.651831 1_3:+2596067 None:intergenic
TCAGTCTGAGGAAACATCGT+AGG 0.657116 1_3:+2596232 None:intergenic
CTAACAATGAATATTTCGCA+CGG 0.657592 1_3:-2596144 Msa0096880:CDS
CATCCAATGTCGTTATCAGG+AGG 0.666461 1_3:-2596262 Msa0096880:CDS
TGTCGTTATCAGGAGGATCG+CGG 0.666590 1_3:-2596255 Msa0096880:CDS
TTGTGGTACAATTAGCAACA+CGG 0.667238 1_3:-2595717 Msa0096880:three_prime_UTR
GAGAAGTCTTGAGAATCAGG+AGG 0.678745 1_3:+2597890 None:intergenic
AACTGATTATGGATACAACA+AGG 0.695121 1_3:-2595891 Msa0096880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAGTTATAGTAATATTT+AGG + chr1_3:2595897-2595916 None:intergenic 10.0%
!! ATAAAGTTATAGTAATATTT+AGG + chr1_3:2595897-2595916 None:intergenic 10.0%
!!! AAAAGAATCTTTCTTTTTAA+GGG + chr1_3:2596299-2596318 None:intergenic 15.0%
!!! AAAAAGAATCTTTCTTTTTA+AGG + chr1_3:2596300-2596319 None:intergenic 15.0%
!! ATTAAAATTCAAAATCAGAA+AGG + chr1_3:2596334-2596353 None:intergenic 15.0%
!!! TGATTTTGAATTTTAATGAA+TGG - chr1_3:2596337-2596356 Msa0096880:intron 15.0%
!! ATGTTAAATACTATTATGAA+TGG - chr1_3:2596680-2596699 Msa0096880:intron 15.0%
!! TATCTTATGTACATATTATA+AGG + chr1_3:2596861-2596880 None:intergenic 15.0%
!!! AAGATATTTTCAACTTATTT+TGG - chr1_3:2596875-2596894 Msa0096880:intron 15.0%
!!! AAAAGAATCTTTCTTTTTAA+GGG + chr1_3:2596299-2596318 None:intergenic 15.0%
!!! AAAAAGAATCTTTCTTTTTA+AGG + chr1_3:2596300-2596319 None:intergenic 15.0%
!! ATTAAAATTCAAAATCAGAA+AGG + chr1_3:2596334-2596353 None:intergenic 15.0%
!!! TGATTTTGAATTTTAATGAA+TGG - chr1_3:2596337-2596356 Msa0096880:intron 15.0%
!! ATGTTAAATACTATTATGAA+TGG - chr1_3:2596680-2596699 Msa0096880:intron 15.0%
!! TATCTTATGTACATATTATA+AGG + chr1_3:2596861-2596880 None:intergenic 15.0%
!!! AAGATATTTTCAACTTATTT+TGG - chr1_3:2596875-2596894 Msa0096880:intron 15.0%
!! TATTTAGGAAGTTTGAATTA+TGG + chr1_3:2595882-2595901 None:intergenic 20.0%
!! GAAAACTCAAAAACAAAATT+TGG - chr1_3:2596028-2596047 Msa0096880:intron 20.0%
!! TTTAATTCCAAATTCTAACA+AGG - chr1_3:2596409-2596428 Msa0096880:intron 20.0%
!!! TATTTTTCTTCTTATTCTTG+TGG - chr1_3:2596511-2596530 Msa0096880:intron 20.0%
!! ACTTATAGCTTATATGAAAA+CGG - chr1_3:2596927-2596946 Msa0096880:intron 20.0%
!! AATGTTATTACAGTTATCAA+TGG + chr1_3:2597890-2597909 None:intergenic 20.0%
!! AAGAATTCATCAATTAGAAA+AGG - chr1_3:2597912-2597931 Msa0096880:CDS 20.0%
!! TATTTAGGAAGTTTGAATTA+TGG + chr1_3:2595882-2595901 None:intergenic 20.0%
!! GAAAACTCAAAAACAAAATT+TGG - chr1_3:2596028-2596047 Msa0096880:intron 20.0%
!! TTTAATTCCAAATTCTAACA+AGG - chr1_3:2596409-2596428 Msa0096880:intron 20.0%
!!! TATTTTTCTTCTTATTCTTG+TGG - chr1_3:2596511-2596530 Msa0096880:intron 20.0%
!! ACTTATAGCTTATATGAAAA+CGG - chr1_3:2596927-2596946 Msa0096880:intron 20.0%
!! AATGTTATTACAGTTATCAA+TGG + chr1_3:2597890-2597909 None:intergenic 20.0%
!! AAGAATTCATCAATTAGAAA+AGG - chr1_3:2597912-2597931 Msa0096880:CDS 20.0%
! TATCAAACATGCACTTAATA+TGG - chr1_3:2595992-2596011 Msa0096880:intron 25.0%
!!! TTTTGTTTGAAGAATGATGA+AGG - chr1_3:2596162-2596181 Msa0096880:CDS 25.0%
!! AAGCTGCTTTAAATATTCAA+TGG + chr1_3:2596602-2596621 None:intergenic 25.0%
! ACTTATTTACGCTTATTTAC+TGG - chr1_3:2596789-2596808 Msa0096880:intron 25.0%
! TATTTATCCAAAGTGACTAT+AGG - chr1_3:2597192-2597211 Msa0096880:CDS 25.0%
! ATTAATTCTGCAGATGTTAA+TGG - chr1_3:2597258-2597277 Msa0096880:intron 25.0%
!! AAGTTTTCAAACCTCTATTA+AGG - chr1_3:2597534-2597553 Msa0096880:intron 25.0%
! TATCAAACATGCACTTAATA+TGG - chr1_3:2595992-2596011 Msa0096880:intron 25.0%
!!! TTTTGTTTGAAGAATGATGA+AGG - chr1_3:2596162-2596181 Msa0096880:CDS 25.0%
!! AAGCTGCTTTAAATATTCAA+TGG + chr1_3:2596602-2596621 None:intergenic 25.0%
! ACTTATTTACGCTTATTTAC+TGG - chr1_3:2596789-2596808 Msa0096880:intron 25.0%
! TATTTATCCAAAGTGACTAT+AGG - chr1_3:2597192-2597211 Msa0096880:CDS 25.0%
! ATTAATTCTGCAGATGTTAA+TGG - chr1_3:2597258-2597277 Msa0096880:intron 25.0%
!! AAGTTTTCAAACCTCTATTA+AGG - chr1_3:2597534-2597553 Msa0096880:intron 25.0%
!! CATGAGTTGGTTGAATAAAT+TGG + chr1_3:2595698-2595717 None:intergenic 30.0%
CAATTTATTCAACCAACTCA+TGG - chr1_3:2595696-2595715 Msa0096880:three_prime_UTR 30.0%
TTGAAAGATGATGAAGAAGA+TGG + chr1_3:2595724-2595743 None:intergenic 30.0%
TAACTTTATCTTGCACCATT+AGG - chr1_3:2595908-2595927 Msa0096880:CDS 30.0%
AACTTTATCTTGCACCATTA+GGG - chr1_3:2595909-2595928 Msa0096880:CDS 30.0%
TAAGTGCATGTTTGATATCA+CGG + chr1_3:2595989-2596008 None:intergenic 30.0%
! GTTCCATAATTTGTCTGAAA+AGG - chr1_3:2596254-2596273 Msa0096880:CDS 30.0%
! GAACCTTTTCAGACAAATTA+TGG + chr1_3:2596260-2596279 None:intergenic 30.0%
TTTAATGAATGGAACAGAGA+AGG - chr1_3:2596348-2596367 Msa0096880:intron 30.0%
TACATCACCTTGTTAGAATT+TGG + chr1_3:2596419-2596438 None:intergenic 30.0%
TAAAGCTTCAATGTTAGATG+AGG - chr1_3:2596576-2596595 Msa0096880:intron 30.0%
TTGACAATTTGACATGGTTA+AGG + chr1_3:2596728-2596747 None:intergenic 30.0%
TAAGCGTAAATAAGTCAATC+CGG + chr1_3:2596784-2596803 None:intergenic 30.0%
! ATTAGTCCATGATGGAATAA+TGG + chr1_3:2597219-2597238 None:intergenic 30.0%
AAGTAACAATTAGTCCATGA+TGG + chr1_3:2597227-2597246 None:intergenic 30.0%
AAATATTCATTGTTAGCAGG+CGG + chr1_3:2597415-2597434 None:intergenic 30.0%
CTAACAATGAATATTTCGCA+CGG - chr1_3:2597419-2597438 Msa0096880:intron 30.0%
TCAAACATGAACCTTAATAG+AGG + chr1_3:2597548-2597567 None:intergenic 30.0%
!! AACTCTTATTTCTGATGTGA+AGG - chr1_3:2597622-2597641 Msa0096880:intron 30.0%
AACTGATTATGGATACAACA+AGG - chr1_3:2597672-2597691 Msa0096880:intron 30.0%
ATTATGGATACAACAAGGAT+TGG - chr1_3:2597677-2597696 Msa0096880:intron 30.0%
!!! ACCAGAGATAAAGGATTTTT+TGG - chr1_3:2597741-2597760 Msa0096880:intron 30.0%
TCCAAAAAATCCTTTATCTC+TGG + chr1_3:2597745-2597764 None:intergenic 30.0%
!!! TTGGACATGTCATTTTGAAA+AGG - chr1_3:2597760-2597779 Msa0096880:intron 30.0%
!!! TGGACATGTCATTTTGAAAA+GGG - chr1_3:2597761-2597780 Msa0096880:intron 30.0%
CTCAAATTTGACACTACATT+AGG - chr1_3:2597819-2597838 Msa0096880:CDS 30.0%
!! CATGAGTTGGTTGAATAAAT+TGG + chr1_3:2595698-2595717 None:intergenic 30.0%
CAATTTATTCAACCAACTCA+TGG - chr1_3:2595696-2595715 Msa0096880:three_prime_UTR 30.0%
TTGAAAGATGATGAAGAAGA+TGG + chr1_3:2595724-2595743 None:intergenic 30.0%
TAACTTTATCTTGCACCATT+AGG - chr1_3:2595908-2595927 Msa0096880:CDS 30.0%
AACTTTATCTTGCACCATTA+GGG - chr1_3:2595909-2595928 Msa0096880:CDS 30.0%
TAAGTGCATGTTTGATATCA+CGG + chr1_3:2595989-2596008 None:intergenic 30.0%
! GTTCCATAATTTGTCTGAAA+AGG - chr1_3:2596254-2596273 Msa0096880:CDS 30.0%
! GAACCTTTTCAGACAAATTA+TGG + chr1_3:2596260-2596279 None:intergenic 30.0%
TTTAATGAATGGAACAGAGA+AGG - chr1_3:2596348-2596367 Msa0096880:intron 30.0%
TACATCACCTTGTTAGAATT+TGG + chr1_3:2596419-2596438 None:intergenic 30.0%
TAAAGCTTCAATGTTAGATG+AGG - chr1_3:2596576-2596595 Msa0096880:intron 30.0%
TTGACAATTTGACATGGTTA+AGG + chr1_3:2596728-2596747 None:intergenic 30.0%
TAAGCGTAAATAAGTCAATC+CGG + chr1_3:2596784-2596803 None:intergenic 30.0%
! ATTAGTCCATGATGGAATAA+TGG + chr1_3:2597219-2597238 None:intergenic 30.0%
AAGTAACAATTAGTCCATGA+TGG + chr1_3:2597227-2597246 None:intergenic 30.0%
AAATATTCATTGTTAGCAGG+CGG + chr1_3:2597415-2597434 None:intergenic 30.0%
CTAACAATGAATATTTCGCA+CGG - chr1_3:2597419-2597438 Msa0096880:intron 30.0%
TCAAACATGAACCTTAATAG+AGG + chr1_3:2597548-2597567 None:intergenic 30.0%
!! AACTCTTATTTCTGATGTGA+AGG - chr1_3:2597622-2597641 Msa0096880:intron 30.0%
AACTGATTATGGATACAACA+AGG - chr1_3:2597672-2597691 Msa0096880:intron 30.0%
ATTATGGATACAACAAGGAT+TGG - chr1_3:2597677-2597696 Msa0096880:intron 30.0%
!!! ACCAGAGATAAAGGATTTTT+TGG - chr1_3:2597741-2597760 Msa0096880:intron 30.0%
TCCAAAAAATCCTTTATCTC+TGG + chr1_3:2597745-2597764 None:intergenic 30.0%
!!! TTGGACATGTCATTTTGAAA+AGG - chr1_3:2597760-2597779 Msa0096880:intron 30.0%
!!! TGGACATGTCATTTTGAAAA+GGG - chr1_3:2597761-2597780 Msa0096880:intron 30.0%
CTCAAATTTGACACTACATT+AGG - chr1_3:2597819-2597838 Msa0096880:CDS 30.0%
TATTAGCAAACAAGCCCTAA+TGG + chr1_3:2595926-2595945 None:intergenic 35.0%
! TTAGGGCTTGTTTGCTAATA+CGG - chr1_3:2595926-2595945 Msa0096880:intron 35.0%
! AGTGCTGTTGATGAAACAAA+AGG - chr1_3:2596747-2596766 Msa0096880:intron 35.0%
! GTTGATGAAACAAAAGGCTA+AGG - chr1_3:2596753-2596772 Msa0096880:intron 35.0%
!!! CTTATTTTGGTAAGCTCTTC+AGG - chr1_3:2596888-2596907 Msa0096880:intron 35.0%
GATGATCCAAATTGAGTCAT+AGG + chr1_3:2597072-2597091 None:intergenic 35.0%
! TAATGGACCTATAGTCACTT+TGG + chr1_3:2597202-2597221 None:intergenic 35.0%
ATAGGTCCATTATTCCATCA+TGG - chr1_3:2597210-2597229 Msa0096880:intron 35.0%
CAGATGTTAATGGTGAGAAA+TGG - chr1_3:2597268-2597287 Msa0096880:intron 35.0%
TGAGTTGTTCAATCTTGATG+AGG - chr1_3:2597351-2597370 Msa0096880:CDS 35.0%
GAGTTGTTCAATCTTGATGA+GGG - chr1_3:2597352-2597371 Msa0096880:CDS 35.0%
AATCTTGATGAGGGTAATAG+TGG - chr1_3:2597361-2597380 Msa0096880:CDS 35.0%
AATATTCATTGTTAGCAGGC+GGG + chr1_3:2597414-2597433 None:intergenic 35.0%
GCGAAATATTCATTGTTAGC+AGG + chr1_3:2597418-2597437 None:intergenic 35.0%
TCAATCTGTAATCATACCCT+CGG - chr1_3:2597480-2597499 Msa0096880:intron 35.0%
AGAGGTTTGAAAACTTGATG+AGG + chr1_3:2597530-2597549 None:intergenic 35.0%
GTTGTATCCATAATCAGTTG+TGG + chr1_3:2597671-2597690 None:intergenic 35.0%
GTTTATGACACATCAGAAGA+AGG + chr1_3:2597710-2597729 None:intergenic 35.0%
CTTGAATTCACCAGAGATAA+AGG - chr1_3:2597732-2597751 Msa0096880:intron 35.0%
! ACACTACATTAGGTTGTTTG+TGG - chr1_3:2597829-2597848 Msa0096880:CDS 35.0%
TTGTGGTACAATTAGCAACA+CGG - chr1_3:2597846-2597865 Msa0096880:CDS 35.0%
TATTAGCAAACAAGCCCTAA+TGG + chr1_3:2595926-2595945 None:intergenic 35.0%
! TTAGGGCTTGTTTGCTAATA+CGG - chr1_3:2595926-2595945 Msa0096880:intron 35.0%
! AGTGCTGTTGATGAAACAAA+AGG - chr1_3:2596747-2596766 Msa0096880:intron 35.0%
! GTTGATGAAACAAAAGGCTA+AGG - chr1_3:2596753-2596772 Msa0096880:intron 35.0%
!!! CTTATTTTGGTAAGCTCTTC+AGG - chr1_3:2596888-2596907 Msa0096880:intron 35.0%
GATGATCCAAATTGAGTCAT+AGG + chr1_3:2597072-2597091 None:intergenic 35.0%
! TAATGGACCTATAGTCACTT+TGG + chr1_3:2597202-2597221 None:intergenic 35.0%
ATAGGTCCATTATTCCATCA+TGG - chr1_3:2597210-2597229 Msa0096880:intron 35.0%
CAGATGTTAATGGTGAGAAA+TGG - chr1_3:2597268-2597287 Msa0096880:intron 35.0%
TGAGTTGTTCAATCTTGATG+AGG - chr1_3:2597351-2597370 Msa0096880:CDS 35.0%
GAGTTGTTCAATCTTGATGA+GGG - chr1_3:2597352-2597371 Msa0096880:CDS 35.0%
AATCTTGATGAGGGTAATAG+TGG - chr1_3:2597361-2597380 Msa0096880:CDS 35.0%
AATATTCATTGTTAGCAGGC+GGG + chr1_3:2597414-2597433 None:intergenic 35.0%
GCGAAATATTCATTGTTAGC+AGG + chr1_3:2597418-2597437 None:intergenic 35.0%
TCAATCTGTAATCATACCCT+CGG - chr1_3:2597480-2597499 Msa0096880:intron 35.0%
AGAGGTTTGAAAACTTGATG+AGG + chr1_3:2597530-2597549 None:intergenic 35.0%
GTTGTATCCATAATCAGTTG+TGG + chr1_3:2597671-2597690 None:intergenic 35.0%
GTTTATGACACATCAGAAGA+AGG + chr1_3:2597710-2597729 None:intergenic 35.0%
CTTGAATTCACCAGAGATAA+AGG - chr1_3:2597732-2597751 Msa0096880:intron 35.0%
! ACACTACATTAGGTTGTTTG+TGG - chr1_3:2597829-2597848 Msa0096880:CDS 35.0%
TTGTGGTACAATTAGCAACA+CGG - chr1_3:2597846-2597865 Msa0096880:CDS 35.0%
AATCAGGAGGAACAAGTGAT+GGG + chr1_3:2595663-2595682 None:intergenic 40.0%
TTGGAGAAGTCTTGAGAATC+AGG + chr1_3:2595679-2595698 None:intergenic 40.0%
AAGAAGATGGATCCATGAGT+TGG + chr1_3:2595711-2595730 None:intergenic 40.0%
!! TAAGAGATGGTGGAAGGATT+AGG + chr1_3:2595766-2595785 None:intergenic 40.0%
AAGAAGAGAAATGAGGAGGA+GGG + chr1_3:2595789-2595808 None:intergenic 40.0%
GAAGAGGAAGAAGAGAAATG+AGG + chr1_3:2595796-2595815 None:intergenic 40.0%
GATATATACCTGAGCAGAAG+AGG + chr1_3:2595812-2595831 None:intergenic 40.0%
TTCAGAGTTGCCATCATCAA+AGG - chr1_3:2596185-2596204 Msa0096880:CDS 40.0%
! CTTCTCTTTGAAGAAGAACG+TGG + chr1_3:2596222-2596241 None:intergenic 40.0%
AATGAATGGAACAGAGAAGG+AGG - chr1_3:2596351-2596370 Msa0096880:intron 40.0%
CAGCACTTGACAATTTGACA+TGG + chr1_3:2596734-2596753 None:intergenic 40.0%
ACAAAAGGCTAAGGTTTGTC+CGG - chr1_3:2596762-2596781 Msa0096880:intron 40.0%
ATTGAGTCATAGGTCGAGTT+TGG + chr1_3:2597062-2597081 None:intergenic 40.0%
ACTCGACCTATGACTCAATT+TGG - chr1_3:2597063-2597082 Msa0096880:intron 40.0%
CTGAGCTTCACAATTAGCTA+AGG - chr1_3:2597102-2597121 Msa0096880:intron 40.0%
TTGCATCCAATGTCGTTATC+AGG - chr1_3:2597298-2597317 Msa0096880:intron 40.0%
AGATTGAACAACTCAGTCTG+AGG + chr1_3:2597346-2597365 None:intergenic 40.0%
ATATTCATTGTTAGCAGGCG+GGG + chr1_3:2597413-2597432 None:intergenic 40.0%
TTTGACATGCTGCATTGTTC+TGG + chr1_3:2597460-2597479 None:intergenic 40.0%
CAACATGCCACAACTGATTA+TGG - chr1_3:2597661-2597680 Msa0096880:intron 40.0%
AATCAGGAGGAACAAGTGAT+GGG + chr1_3:2595663-2595682 None:intergenic 40.0%
TTGGAGAAGTCTTGAGAATC+AGG + chr1_3:2595679-2595698 None:intergenic 40.0%
AAGAAGATGGATCCATGAGT+TGG + chr1_3:2595711-2595730 None:intergenic 40.0%
!! TAAGAGATGGTGGAAGGATT+AGG + chr1_3:2595766-2595785 None:intergenic 40.0%
AAGAAGAGAAATGAGGAGGA+GGG + chr1_3:2595789-2595808 None:intergenic 40.0%
GAAGAGGAAGAAGAGAAATG+AGG + chr1_3:2595796-2595815 None:intergenic 40.0%
GATATATACCTGAGCAGAAG+AGG + chr1_3:2595812-2595831 None:intergenic 40.0%
TTCAGAGTTGCCATCATCAA+AGG - chr1_3:2596185-2596204 Msa0096880:CDS 40.0%
! CTTCTCTTTGAAGAAGAACG+TGG + chr1_3:2596222-2596241 None:intergenic 40.0%
AATGAATGGAACAGAGAAGG+AGG - chr1_3:2596351-2596370 Msa0096880:intron 40.0%
CAGCACTTGACAATTTGACA+TGG + chr1_3:2596734-2596753 None:intergenic 40.0%
ACAAAAGGCTAAGGTTTGTC+CGG - chr1_3:2596762-2596781 Msa0096880:intron 40.0%
ATTGAGTCATAGGTCGAGTT+TGG + chr1_3:2597062-2597081 None:intergenic 40.0%
ACTCGACCTATGACTCAATT+TGG - chr1_3:2597063-2597082 Msa0096880:intron 40.0%
CTGAGCTTCACAATTAGCTA+AGG - chr1_3:2597102-2597121 Msa0096880:intron 40.0%
TTGCATCCAATGTCGTTATC+AGG - chr1_3:2597298-2597317 Msa0096880:intron 40.0%
AGATTGAACAACTCAGTCTG+AGG + chr1_3:2597346-2597365 None:intergenic 40.0%
ATATTCATTGTTAGCAGGCG+GGG + chr1_3:2597413-2597432 None:intergenic 40.0%
TTTGACATGCTGCATTGTTC+TGG + chr1_3:2597460-2597479 None:intergenic 40.0%
CAACATGCCACAACTGATTA+TGG - chr1_3:2597661-2597680 Msa0096880:intron 40.0%
!! GAACAAGTGATGGGTGTGTT+TGG + chr1_3:2595654-2595673 None:intergenic 45.0%
GAATCAGGAGGAACAAGTGA+TGG + chr1_3:2595664-2595683 None:intergenic 45.0%
GAGAAGTCTTGAGAATCAGG+AGG + chr1_3:2595676-2595695 None:intergenic 45.0%
GTGGAAGGATTAGGAGGATA+GGG + chr1_3:2595757-2595776 None:intergenic 45.0%
GAAGAAGAGAAATGAGGAGG+AGG + chr1_3:2595790-2595809 None:intergenic 45.0%
GAGGAAGAAGAGAAATGAGG+AGG + chr1_3:2595793-2595812 None:intergenic 45.0%
TTGAAGAAGAACGTGGTGGT+GGG + chr1_3:2596215-2596234 None:intergenic 45.0%
TTTGAAGAAGAACGTGGTGG+TGG + chr1_3:2596216-2596235 None:intergenic 45.0%
! CTCTTTGAAGAAGAACGTGG+TGG + chr1_3:2596219-2596238 None:intergenic 45.0%
CATAGGTCGAGTTTGGACTT+CGG + chr1_3:2597055-2597074 None:intergenic 45.0%
CATCCAATGTCGTTATCAGG+AGG - chr1_3:2597301-2597320 Msa0096880:intron 45.0%
! GATCCTCCTGATAACGACAT+TGG + chr1_3:2597307-2597326 None:intergenic 45.0%
TCAGTCTGAGGAAACATCGT+AGG + chr1_3:2597334-2597353 None:intergenic 45.0%
GAAGCTAAATTTGTCGCCGA+GGG + chr1_3:2597499-2597518 None:intergenic 45.0%
TGAAGCTAAATTTGTCGCCG+AGG + chr1_3:2597500-2597519 None:intergenic 45.0%
TCAGTTGTGGCATGTTGTTG+TGG + chr1_3:2597658-2597677 None:intergenic 45.0%
!! GAACAAGTGATGGGTGTGTT+TGG + chr1_3:2595654-2595673 None:intergenic 45.0%
GAATCAGGAGGAACAAGTGA+TGG + chr1_3:2595664-2595683 None:intergenic 45.0%
GAGAAGTCTTGAGAATCAGG+AGG + chr1_3:2595676-2595695 None:intergenic 45.0%
GTGGAAGGATTAGGAGGATA+GGG + chr1_3:2595757-2595776 None:intergenic 45.0%
GAAGAAGAGAAATGAGGAGG+AGG + chr1_3:2595790-2595809 None:intergenic 45.0%
GAGGAAGAAGAGAAATGAGG+AGG + chr1_3:2595793-2595812 None:intergenic 45.0%
TTGAAGAAGAACGTGGTGGT+GGG + chr1_3:2596215-2596234 None:intergenic 45.0%
TTTGAAGAAGAACGTGGTGG+TGG + chr1_3:2596216-2596235 None:intergenic 45.0%
! CTCTTTGAAGAAGAACGTGG+TGG + chr1_3:2596219-2596238 None:intergenic 45.0%
CATAGGTCGAGTTTGGACTT+CGG + chr1_3:2597055-2597074 None:intergenic 45.0%
CATCCAATGTCGTTATCAGG+AGG - chr1_3:2597301-2597320 Msa0096880:intron 45.0%
! GATCCTCCTGATAACGACAT+TGG + chr1_3:2597307-2597326 None:intergenic 45.0%
TCAGTCTGAGGAAACATCGT+AGG + chr1_3:2597334-2597353 None:intergenic 45.0%
GAAGCTAAATTTGTCGCCGA+GGG + chr1_3:2597499-2597518 None:intergenic 45.0%
TGAAGCTAAATTTGTCGCCG+AGG + chr1_3:2597500-2597519 None:intergenic 45.0%
TCAGTTGTGGCATGTTGTTG+TGG + chr1_3:2597658-2597677 None:intergenic 45.0%
GGTGGAAGGATTAGGAGGAT+AGG + chr1_3:2595758-2595777 None:intergenic 50.0%
!! GAGATGGTGGAAGGATTAGG+AGG + chr1_3:2595763-2595782 None:intergenic 50.0%
ATGAGGAGGAGGGTAAGAGA+TGG + chr1_3:2595779-2595798 None:intergenic 50.0%
CTCTTCTTCCTCTTCTGCTC+AGG - chr1_3:2595801-2595820 Msa0096880:three_prime_UTR 50.0%
GCAGAAACAAGCTCGTGAGT+TGG + chr1_3:2595961-2595980 None:intergenic 50.0%
! TGAAGAAGAACGTGGTGGTG+GGG + chr1_3:2596214-2596233 None:intergenic 50.0%
TGTCGTTATCAGGAGGATCG+CGG - chr1_3:2597308-2597327 Msa0096880:intron 50.0%
GGTGGAAGGATTAGGAGGAT+AGG + chr1_3:2595758-2595777 None:intergenic 50.0%
!! GAGATGGTGGAAGGATTAGG+AGG + chr1_3:2595763-2595782 None:intergenic 50.0%
ATGAGGAGGAGGGTAAGAGA+TGG + chr1_3:2595779-2595798 None:intergenic 50.0%
CTCTTCTTCCTCTTCTGCTC+AGG - chr1_3:2595801-2595820 Msa0096880:three_prime_UTR 50.0%
GCAGAAACAAGCTCGTGAGT+TGG + chr1_3:2595961-2595980 None:intergenic 50.0%
! TGAAGAAGAACGTGGTGGTG+GGG + chr1_3:2596214-2596233 None:intergenic 50.0%
TGTCGTTATCAGGAGGATCG+CGG - chr1_3:2597308-2597327 Msa0096880:intron 50.0%
!! GGAGGGTAAGAGATGGTGGA+AGG + chr1_3:2595772-2595791 None:intergenic 55.0%
AGGAGGAGGGTAAGAGATGG+TGG + chr1_3:2595776-2595795 None:intergenic 55.0%
!! GGAGGGTAAGAGATGGTGGA+AGG + chr1_3:2595772-2595791 None:intergenic 55.0%
AGGAGGAGGGTAAGAGATGG+TGG + chr1_3:2595776-2595795 None:intergenic 55.0%
GGTGGGGCAGCCTTTGATGA+TGG + chr1_3:2596198-2596217 None:intergenic 60.0%
GGTGGGGCAGCCTTTGATGA+TGG + chr1_3:2596198-2596217 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 2595622 2597963 2595622 ID=Msa0096880;Name=Msa0096880
chr1_3 mRNA 2595622 2597963 2595622 ID=Msa0096880-mRNA-1;Parent=Msa0096880;Name=Msa0096880-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.8|0.66|1|1|1|6|236|267
chr1_3 exon 2595622 2595941 2595622 ID=Msa0096880-mRNA-1:exon:709;Parent=Msa0096880-mRNA-1
chr1_3 exon 2596030 2596314 2596030 ID=Msa0096880-mRNA-1:exon:708;Parent=Msa0096880-mRNA-1
chr1_3 exon 2596949 2597014 2596949 ID=Msa0096880-mRNA-1:exon:707;Parent=Msa0096880-mRNA-1
chr1_3 exon 2597155 2597220 2597155 ID=Msa0096880-mRNA-1:exon:706;Parent=Msa0096880-mRNA-1
chr1_3 exon 2597310 2597411 2597310 ID=Msa0096880-mRNA-1:exon:705;Parent=Msa0096880-mRNA-1
chr1_3 exon 2597763 2597963 2597763 ID=Msa0096880-mRNA-1:exon:704;Parent=Msa0096880-mRNA-1
chr1_3 CDS 2597763 2597963 2597763 ID=Msa0096880-mRNA-1:cds;Parent=Msa0096880-mRNA-1
chr1_3 CDS 2597310 2597411 2597310 ID=Msa0096880-mRNA-1:cds;Parent=Msa0096880-mRNA-1
chr1_3 CDS 2597155 2597220 2597155 ID=Msa0096880-mRNA-1:cds;Parent=Msa0096880-mRNA-1
chr1_3 CDS 2596949 2597014 2596949 ID=Msa0096880-mRNA-1:cds;Parent=Msa0096880-mRNA-1
chr1_3 CDS 2596030 2596314 2596030 ID=Msa0096880-mRNA-1:cds;Parent=Msa0096880-mRNA-1
chr1_3 CDS 2595858 2595941 2595858 ID=Msa0096880-mRNA-1:cds;Parent=Msa0096880-mRNA-1
chr1_3 three_prime_UTR 2595622 2595857 2595622 ID=Msa0096880-mRNA-1:three_prime_utr;Parent=Msa0096880-mRNA-1
Gene Sequence

>Msa0096880

ATGGCTGGTTCTTCTGATGATGATATACACCAAACACACCCATCACTTGTTCCTCCTGATTCTCAAGACTTCTCCAATTTATTCAACCAACTCATGGATCCATCTTCTTCATCATCTTTCAATTTTTCTGATCCCTATCCTCCTAATCCTTCCACCATCTCTTACCCTCCTCCTCATTTCTCTTCTTCCTCTTCTGCTCAGAATGATGAAGGTTCAGAGTTGCCATCATCAAAGGCTGCCCCACCACCACGTTCTTCTTCAAAGAGAAGCAGAGCTGCAGAGTTCCATAATTTGTCTGAAAAGAGAAGGAGGAGTAAAATTAATGAGAAATTGAAAGCTTTACAAAATTTAATTCCAAATTCTAACAAGACAGATAAAGCTTCAATGTTAGATGAGGCCATTGAATATTTAAAGCAGCTTCAGCTTCAAGTGCAAATGTTAATGGTGAGAAATGGTTATAGCTTGCATCCAATGTCGTTATCAGGAGGATCGCGGCCTACGATGTTTCCTCAGACTGAGTTGTTCAATCTTGATGAGGGTAATAGTGGATTTCACAATTCTAACAATGCAATTACCCCGCCTGCTAACAATGAATATTTCGCACGGCAAGCTTTTAGTTTTCCAGAACAATGCAGCATGTCAAATCAATCTGTAATCATACCCTCGGCGACAAATTTAGCTTCATTTGATACCTCATCAAGTTTTCAAACCTCTATTAAGGATGTTTTCAGCCACAACAACATGCCACAACTGATTATGGATACAACAAGGATTGGAAAAACTCCTTCTTCTGATGTGTCATAA
Protein sequence

>Msa0096880

MAGSSDDDIHQTHPSLVPPDSQDFSNLFNQLMDPSSSSSFNFSDPYPPNPSTISYPPPHFSSSSSAQNDEGSELPSSKAAPPPRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMVRNGYSLHPMSLSGGSRPTMFPQTELFNLDEGNSGFHNSNNAITPPANNEYFARQAFSFPEQCSMSNQSVIIPSATNLASFDTSSSFQTSIKDVFSHNNMPQLIMDTTRIGKTPSSDVS*