AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0144870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0144870 MtrunA17_Chr1g0153241 95.522 268 10 2 1 267 1 267 6.73e-179 493
Msa0144870 MtrunA17_Chr1g0153751 94.792 96 4 1 146 240 1 96 2.09e-60 186
Msa0144870 MtrunA17_Chr5g0402031 74.725 91 18 2 94 182 114 201 2.77e-34 126
Msa0144870 MtrunA17_Chr7g0262691 62.637 91 29 1 85 175 252 337 3.90e-29 114
Msa0144870 MtrunA17_Chr1g0193321 61.538 91 35 0 85 175 462 552 1.76e-28 114
Msa0144870 MtrunA17_Chr1g0182791 62.637 91 23 1 85 175 317 396 1.82e-28 113
Msa0144870 MtrunA17_Chr3g0095391 57.000 100 39 2 65 162 287 384 1.01e-26 108
Msa0144870 MtrunA17_Chr7g0231461 70.968 62 18 0 86 147 298 359 2.86e-23 98.6
Msa0144870 MtrunA17_Chr7g0271251 56.667 90 35 1 85 170 432 521 2.97e-22 95.9
Msa0144870 MtrunA17_Chr7g0270871 56.098 82 34 2 68 147 183 264 9.05e-20 87.8
Msa0144870 MtrunA17_Chr4g0074161 40.146 137 78 3 20 152 138 274 1.28e-19 87.4
Msa0144870 MtrunA17_Chr1g0190731 46.835 79 36 1 75 147 177 255 4.44e-17 79.7
Msa0144870 MtrunA17_Chr5g0393721 37.615 109 61 1 54 162 200 301 4.33e-16 76.6
Msa0144870 MtrunA17_Chr3g0134741 39.241 79 48 0 84 162 228 306 4.60e-14 70.9
Msa0144870 MtrunA17_Chr1g0207311 37.500 80 45 1 88 162 194 273 1.22e-13 69.3
Msa0144870 MtrunA17_Chr6g0484271 44.304 79 43 1 73 150 143 221 1.51e-13 68.9
Msa0144870 MtrunA17_Chr7g0234761 39.560 91 47 2 68 150 293 383 4.89e-13 68.6
Msa0144870 MtrunA17_Chr8g0365941 40.000 95 51 2 62 150 277 371 6.44e-13 68.2
Msa0144870 MtrunA17_Chr1g0207301 43.548 62 35 0 101 162 304 365 9.38e-13 67.4
Msa0144870 MtrunA17_Chr3g0144641 47.692 65 33 1 87 150 193 257 1.03e-12 67.4
Msa0144870 MtrunA17_Chr4g0035101 42.353 85 47 2 64 147 123 206 1.10e-12 67.0
Msa0144870 MtrunA17_Chr8g0339091 47.692 65 33 1 87 150 293 357 2.14e-12 66.6
Msa0144870 MtrunA17_Chr1g0152131 46.154 65 34 1 87 150 262 326 2.62e-12 66.2
Msa0144870 MtrunA17_Chr1g0152651 35.052 97 58 1 63 159 257 348 3.24e-12 65.9
Msa0144870 MtrunA17_Chr8g0363921 44.615 65 35 1 87 150 153 217 3.40e-12 65.1
Msa0144870 MtrunA17_Chr5g0415291 37.000 100 51 3 63 150 79 178 7.88e-12 63.5
Msa0144870 MtrunA17_Chr5g0421111 46.154 65 34 1 87 150 367 431 1.20e-11 64.3
Msa0144870 MtrunA17_Chr1g0185621 51.786 56 27 0 96 151 476 531 1.22e-11 64.7
Msa0144870 MtrunA17_Chr3g0131771 45.205 73 38 2 87 158 149 220 1.56e-11 63.5
Msa0144870 MtrunA17_Chr5g0435021 30.496 141 83 4 21 147 141 280 3.23e-11 62.4
Msa0144870 MtrunA17_Chr1g0184841 42.697 89 44 2 71 152 100 188 3.50e-11 62.4
Msa0144870 MtrunA17_Chr8g0386921 48.077 52 27 0 96 147 407 458 8.23e-11 62.0
Msa0144870 MtrunA17_Chr2g0320291 33.028 109 62 3 46 147 81 185 9.11e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0144870 AT4G36930.1 83.562 73 12 0 90 162 196 268 5.27e-35 129
Msa0144870 AT5G67110.1 47.590 166 72 4 5 160 2 162 1.15e-34 124
Msa0144870 AT1G09530.3 62.105 95 26 2 78 170 328 414 1.07e-28 114
Msa0144870 AT1G09530.2 62.105 95 26 2 78 170 328 414 1.07e-28 114
Msa0144870 AT1G09530.5 62.105 95 26 2 78 170 328 414 1.07e-28 114
Msa0144870 AT1G09530.1 62.105 95 26 2 78 170 328 414 1.07e-28 114
Msa0144870 AT1G09530.4 62.105 95 26 2 78 170 328 414 1.07e-28 114
Msa0144870 AT1G09530.6 62.105 95 26 2 78 170 328 414 1.07e-28 114
Msa0144870 AT2G20180.7 73.016 63 17 0 85 147 207 269 9.39e-26 105
Msa0144870 AT2G20180.1 73.016 63 17 0 85 147 207 269 9.39e-26 105
Msa0144870 AT2G20180.5 73.016 63 17 0 85 147 207 269 9.39e-26 105
Msa0144870 AT2G20180.4 73.016 63 17 0 85 147 278 340 2.61e-25 104
Msa0144870 AT2G20180.6 73.016 63 17 0 85 147 278 340 2.61e-25 104
Msa0144870 AT2G20180.2 73.016 63 17 0 85 147 278 340 2.61e-25 104
Msa0144870 AT2G20180.3 73.016 63 17 0 85 147 278 340 2.61e-25 104
Msa0144870 AT2G20180.8 67.143 70 23 0 77 146 270 339 3.68e-25 102
Msa0144870 AT4G00050.2 65.714 70 24 0 78 147 98 167 4.30e-24 99.0
Msa0144870 AT4G00050.3 65.714 70 24 0 78 147 200 269 9.43e-24 99.4
Msa0144870 AT4G00050.1 65.714 70 24 0 78 147 200 269 1.36e-23 99.0
Msa0144870 AT4G28800.1 54.762 84 37 1 85 168 249 331 1.64e-21 93.6
Msa0144870 AT4G28800.2 64.062 64 23 0 85 148 261 324 8.94e-21 91.7
Msa0144870 AT2G46970.3 37.956 137 69 2 68 190 184 318 1.04e-20 90.9
Msa0144870 AT2G46970.2 37.956 137 69 2 68 190 175 309 1.05e-20 90.9
Msa0144870 AT4G28815.2 59.375 64 26 0 85 148 68 131 1.13e-20 88.2
Msa0144870 AT2G46970.1 37.956 137 69 2 68 190 206 340 1.36e-20 90.9
Msa0144870 AT4G28815.1 59.375 64 26 0 85 148 144 207 3.75e-20 88.2
Msa0144870 AT4G28790.1 65.079 63 22 0 85 147 271 333 3.95e-20 89.4
Msa0144870 AT3G59060.1 54.651 86 36 1 85 170 250 332 5.28e-20 89.4
Msa0144870 AT3G59060.3 54.651 86 36 1 85 170 250 332 5.60e-20 89.4
Msa0144870 AT3G59060.2 54.651 86 36 1 85 170 250 332 5.60e-20 89.4
Msa0144870 AT3G59060.4 54.651 86 36 1 85 170 250 332 5.60e-20 89.4
Msa0144870 AT2G24260.2 55.556 72 28 1 80 147 26 97 6.91e-20 86.3
Msa0144870 AT4G28790.2 62.121 66 25 0 85 150 271 336 1.09e-19 87.4
Msa0144870 AT2G43010.2 58.824 85 30 1 86 170 252 331 1.54e-19 87.8
Msa0144870 AT2G43010.4 58.824 85 30 1 86 170 252 331 1.55e-19 87.8
Msa0144870 AT5G58010.1 47.778 90 40 2 83 165 97 186 1.58e-19 86.3
Msa0144870 AT2G43010.1 58.824 85 30 1 86 170 252 331 1.59e-19 87.8
Msa0144870 AT2G43010.3 58.824 85 30 1 86 170 259 338 1.94e-19 87.4
Msa0144870 AT2G24260.1 54.430 79 31 2 79 152 128 206 2.34e-19 86.7
Msa0144870 AT2G43010.5 58.824 85 30 1 86 170 294 373 2.81e-19 87.4
Msa0144870 AT4G30980.1 45.652 92 45 2 62 152 111 198 5.16e-19 85.1
Msa0144870 AT4G30980.2 45.652 92 45 2 62 152 159 246 1.69e-18 84.3
Msa0144870 AT5G61270.2 47.826 92 46 1 59 150 48 137 5.16e-18 82.0
Msa0144870 AT5G61270.3 47.826 92 46 1 59 150 48 137 5.16e-18 82.0
Msa0144870 AT5G61270.1 47.826 92 46 1 59 150 136 225 9.39e-18 82.4
Msa0144870 AT3G62090.1 54.545 66 30 0 88 153 168 233 1.58e-15 75.9
Msa0144870 AT3G62090.2 51.429 70 34 0 84 153 181 250 1.79e-15 75.9
Msa0144870 AT5G67110.3 36.145 166 69 5 5 160 2 140 2.45e-15 72.8
Msa0144870 AT4G33880.1 36.449 107 61 1 63 162 237 343 3.49e-15 74.7
Msa0144870 AT1G27740.1 36.634 101 60 1 62 162 148 244 8.03e-15 72.8
Msa0144870 AT4G28811.1 63.492 63 23 0 85 147 351 413 2.89e-14 72.8
Msa0144870 AT2G14760.3 37.000 100 62 1 64 162 228 327 6.20e-14 71.2
Msa0144870 AT5G67110.2 35.211 142 77 4 6 137 3 139 1.10e-13 67.4
Msa0144870 AT5G50915.3 43.038 79 41 2 76 150 124 202 3.69e-13 68.2
Msa0144870 AT5G50915.4 43.038 79 41 2 76 150 124 202 3.69e-13 68.2
Msa0144870 AT5G50915.1 43.038 79 41 2 76 150 124 202 4.34e-13 68.2
Msa0144870 AT5G50915.2 43.038 79 41 2 76 150 124 202 4.34e-13 68.2
Msa0144870 AT2G14760.1 36.709 79 50 0 84 162 236 314 6.31e-13 68.2
Msa0144870 AT5G43175.1 28.571 133 94 1 31 162 77 209 7.34e-13 66.6
Msa0144870 AT5G48560.2 47.692 65 33 1 87 150 303 367 1.35e-12 67.8
Msa0144870 AT3G07340.2 47.692 65 33 1 87 150 260 324 1.38e-12 67.4
Msa0144870 AT3G07340.1 47.692 65 33 1 87 150 260 324 1.46e-12 67.4
Msa0144870 AT5G48560.1 47.692 65 33 1 87 150 303 367 1.63e-12 67.4
Msa0144870 AT1G68920.3 47.692 65 33 1 87 150 304 368 1.71e-12 67.4
Msa0144870 AT1G68920.1 47.692 65 33 1 87 150 305 369 1.78e-12 67.4
Msa0144870 AT1G68920.4 47.692 65 33 1 87 150 305 369 1.78e-12 67.4
Msa0144870 AT1G68920.2 47.692 65 33 1 87 150 305 369 1.78e-12 67.4
Msa0144870 AT5G62610.2 39.362 94 50 3 87 177 155 244 2.01e-12 66.2
Msa0144870 AT5G62610.1 39.362 94 50 3 87 177 155 244 2.01e-12 66.2
Msa0144870 AT4G36540.2 46.154 65 34 1 87 150 143 207 2.53e-12 66.2
Msa0144870 AT4G36540.1 46.154 65 34 1 87 150 143 207 2.54e-12 66.2
Msa0144870 AT1G73830.2 44.615 65 35 1 87 150 149 213 4.51e-12 65.1
Msa0144870 AT1G73830.1 44.615 65 35 1 87 150 149 213 4.87e-12 64.7
Msa0144870 AT2G18300.2 46.154 65 34 1 87 150 187 251 5.96e-12 65.5
Msa0144870 AT2G18300.1 46.154 65 34 1 87 150 187 251 6.14e-12 65.1
Msa0144870 AT1G10120.2 46.154 65 34 1 87 150 208 272 6.76e-12 65.1
Msa0144870 AT1G10120.1 46.154 65 34 1 87 150 208 272 6.76e-12 65.1
Msa0144870 AT3G23690.1 44.615 65 35 1 87 150 193 257 7.20e-12 65.1
Msa0144870 AT2G18300.3 46.154 65 34 1 87 150 187 251 7.37e-12 65.1
Msa0144870 AT1G26260.4 44.615 65 35 1 87 150 225 289 8.74e-12 65.1
Msa0144870 AT1G26260.1 44.615 65 35 1 87 150 225 289 8.74e-12 65.1
Msa0144870 AT1G26260.6 44.615 65 35 1 87 150 225 289 8.74e-12 65.1
Msa0144870 AT1G26260.2 44.615 65 35 1 87 150 225 289 8.74e-12 65.1
Msa0144870 AT1G59640.1 44.615 65 35 1 87 150 138 202 8.95e-12 64.3
Msa0144870 AT1G26260.5 44.615 65 35 1 87 150 203 267 9.23e-12 65.1
Msa0144870 AT1G26260.3 44.615 65 35 1 87 150 174 238 9.37e-12 64.7
Msa0144870 AT4G34530.1 43.077 65 36 1 87 150 174 238 1.06e-11 64.7
Msa0144870 AT1G59640.2 46.774 62 32 1 87 147 138 199 1.88e-11 63.9
Msa0144870 AT1G02340.2 56.000 50 21 1 99 147 134 183 1.99e-11 63.5
Msa0144870 AT1G02340.1 56.000 50 21 1 99 147 141 190 2.04e-11 63.5
Msa0144870 AT1G18400.2 43.077 65 36 1 87 150 147 211 2.29e-11 62.8
Msa0144870 AT1G18400.1 43.077 65 36 1 87 150 147 211 2.56e-11 62.8
Msa0144870 AT1G25330.1 44.615 65 35 1 87 150 106 170 3.09e-11 62.0
Msa0144870 AT1G63650.3 53.846 52 24 0 96 147 406 457 4.09e-11 63.5
Msa0144870 AT1G63650.1 53.846 52 24 0 96 147 406 457 4.09e-11 63.5
Msa0144870 AT1G63650.2 53.846 52 24 0 96 147 406 457 4.09e-11 63.5
Msa0144870 AT1G66470.1 43.056 72 36 1 76 147 191 257 4.89e-11 62.4
Msa0144870 AT1G03040.1 42.045 88 41 2 75 152 125 212 7.32e-11 62.0
Msa0144870 AT1G03040.2 30.769 182 92 5 75 235 120 288 7.38e-11 61.6
Msa0144870 AT2G22770.1 53.846 52 24 0 96 147 133 184 8.77e-11 61.6

Find 70 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACATCACCTTGTTAGAATT+TGG 0.111527 1_4:-4444892 None:intergenic
CATGAGTTGGTTGAATAAAT+TGG 0.211961 1_4:-4444175 None:intergenic
CAACATGCCACAACTGATTA+TGG 0.244370 1_4:+4446119 Msa0144870:CDS
ATTAATTCTGCAGATGTTAA+TGG 0.295896 1_4:+4445716 Msa0144870:intron
CTTGAATTCACCAGAGATAA+AGG 0.298355 1_4:+4446190 Msa0144870:three_prime_UTR
TTTGACATGCTGCATTGTTC+TGG 0.325901 1_4:-4445915 None:intergenic
CTCAAATTTGACACTACATT+AGG 0.351513 1_4:+4446277 Msa0144870:three_prime_UTR
CTCTTCTTCCTCTTCTGCTC+AGG 0.354272 1_4:+4444281 Msa0144870:CDS
TAAGAGATGGTGGAAGGATT+AGG 0.357303 1_4:-4444243 None:intergenic
TTGGAGAAGTCTTGAGAATC+AGG 0.361248 1_4:-4444156 None:intergenic
GTTCCATAATTTGTCTGAAA+AGG 0.391347 1_4:+4444730 Msa0144870:CDS
TTGCATCCAATGTCGTTATC+AGG 0.395094 1_4:+4445756 Msa0144870:CDS
GAACAAGTGATGGGTGTGTT+TGG 0.440894 1_4:-4444131 None:intergenic
AATGTTATTACAGTTATCAA+TGG 0.444309 1_4:-4446345 None:intergenic
AGGAGGAGGGTAAGAGATGG+TGG 0.449041 1_4:-4444253 None:intergenic
ACACTACATTAGGTTGTTTG+TGG 0.463808 1_4:+4446287 Msa0144870:three_prime_UTR
GCGAAATATTCATTGTTAGC+AGG 0.465887 1_4:-4445873 None:intergenic
AAGCTGCTTTAAATATTCAA+TGG 0.465998 1_4:-4445057 None:intergenic
AATCTTGATGAGGGTAATAG+TGG 0.470391 1_4:+4445819 Msa0144870:CDS
TTGAAAGATGATGAAGAAGA+TGG 0.470481 1_4:-4444201 None:intergenic
AAGAATTCATCAATTAGAAA+AGG 0.474846 1_4:+4446370 Msa0144870:three_prime_UTR
CAATTTATTCAACCAACTCA+TGG 0.476360 1_4:+4444176 Msa0144870:CDS
GGTGGGGCAGCCTTTGATGA+TGG 0.476408 1_4:-4444671 None:intergenic
GAAGAAGAGAAATGAGGAGG+AGG 0.480762 1_4:-4444267 None:intergenic
GGTGGAAGGATTAGGAGGAT+AGG 0.482360 1_4:-4444235 None:intergenic
TCAAACATGAACCTTAATAG+AGG 0.484571 1_4:-4446003 None:intergenic
TTTGAAGAAGAACGTGGTGG+TGG 0.492656 1_4:-4444689 None:intergenic
ATTATGGATACAACAAGGAT+TGG 0.493878 1_4:+4446135 Msa0144870:CDS
GGAGGGTAAGAGATGGTGGA+AGG 0.497229 1_4:-4444249 None:intergenic
GTGGAAGGATTAGGAGGATA+GGG 0.512443 1_4:-4444234 None:intergenic
AATATTCATTGTTAGCAGGC+GGG 0.525894 1_4:-4445869 None:intergenic
GATATATACCTGAGCAGAAG+AGG 0.528648 1_4:-4444289 None:intergenic
GAATCAGGAGGAACAAGTGA+TGG 0.531363 1_4:-4444141 None:intergenic
GAGATGGTGGAAGGATTAGG+AGG 0.532760 1_4:-4444240 None:intergenic
AAGAAGAGAAATGAGGAGGA+GGG 0.533296 1_4:-4444266 None:intergenic
ATGAGGAGGAGGGTAAGAGA+TGG 0.537204 1_4:-4444256 None:intergenic
TTGAAGAAGAACGTGGTGGT+GGG 0.545725 1_4:-4444688 None:intergenic
ATATTCATTGTTAGCAGGCG+GGG 0.547212 1_4:-4445868 None:intergenic
TTCAGAGTTGCCATCATCAA+AGG 0.550812 1_4:+4444661 Msa0144870:CDS
AATGAATGGAACAGAGAAGG+AGG 0.550832 1_4:+4444827 Msa0144870:intron
CAGATGTTAATGGTGAGAAA+TGG 0.552941 1_4:+4445726 Msa0144870:intron
GAAGAGGAAGAAGAGAAATG+AGG 0.557122 1_4:-4444273 None:intergenic
ACAATAATAACAATAATGGC+TGG 0.560564 1_4:+4444087 None:intergenic
GTTTATGACACATCAGAAGA+AGG 0.583034 1_4:-4446165 None:intergenic
TGAAGAAGAACGTGGTGGTG+GGG 0.583658 1_4:-4444687 None:intergenic
TGAGTTGTTCAATCTTGATG+AGG 0.583812 1_4:+4445809 Msa0144870:CDS
AAATATTCATTGTTAGCAGG+CGG 0.584130 1_4:-4445870 None:intergenic
TCAATCTGTAATCATACCCT+CGG 0.590382 1_4:+4445938 Msa0144870:CDS
TCAGTTGTGGCATGTTGTTG+TGG 0.593873 1_4:-4446113 None:intergenic
TTTAATTCCAAATTCTAACA+AGG 0.599565 1_4:+4444885 Msa0144870:CDS
GAGGAAGAAGAGAAATGAGG+AGG 0.607406 1_4:-4444270 None:intergenic
GAGTTGTTCAATCTTGATGA+GGG 0.608970 1_4:+4445810 Msa0144870:CDS
TAAAGCTTCAATGTTAGATG+AGG 0.610444 1_4:+4445034 Msa0144870:CDS
AGAGGTTTGAAAACTTGATG+AGG 0.611385 1_4:-4445985 None:intergenic
AATCAGGAGGAACAAGTGAT+GGG 0.615697 1_4:-4444140 None:intergenic
TGAAGCTAAATTTGTCGCCG+AGG 0.617569 1_4:-4445955 None:intergenic
GATCCTCCTGATAACGACAT+TGG 0.621566 1_4:-4445762 None:intergenic
AAGAAGATGGATCCATGAGT+TGG 0.625627 1_4:-4444188 None:intergenic
GTTGTATCCATAATCAGTTG+TGG 0.626275 1_4:-4446126 None:intergenic
CTTCTCTTTGAAGAAGAACG+TGG 0.628949 1_4:-4444695 None:intergenic
AGATTGAACAACTCAGTCTG+AGG 0.648355 1_4:-4445801 None:intergenic
CTCTTTGAAGAAGAACGTGG+TGG 0.649691 1_4:-4444692 None:intergenic
GAAGCTAAATTTGTCGCCGA+GGG 0.651831 1_4:-4445954 None:intergenic
TCAGTCTGAGGAAACATCGT+AGG 0.657116 1_4:-4445789 None:intergenic
CTAACAATGAATATTTCGCA+CGG 0.657592 1_4:+4445877 Msa0144870:CDS
CATCCAATGTCGTTATCAGG+AGG 0.666461 1_4:+4445759 Msa0144870:CDS
TGTCGTTATCAGGAGGATCG+CGG 0.666590 1_4:+4445766 Msa0144870:CDS
TTGTGGTACAATTAGCAACA+CGG 0.667238 1_4:+4446304 Msa0144870:three_prime_UTR
GAGAAGTCTTGAGAATCAGG+AGG 0.678745 1_4:-4444153 None:intergenic
AACTGATTATGGATACAACA+AGG 0.695121 1_4:+4446130 Msa0144870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAGTTATAGTAATATTT+AGG - chr1_4:4444369-4444388 None:intergenic 10.0%
!! ATTAAAATTAAAAATCAGAA+AGG - chr1_4:4444810-4444829 None:intergenic 10.0%
!!! TGATTTTTAATTTTAATGAA+TGG + chr1_4:4444813-4444832 Msa0144870:intron 10.0%
!! ATAAAGTTATAGTAATATTT+AGG - chr1_4:4444369-4444388 None:intergenic 10.0%
!! ATTAAAATTAAAAATCAGAA+AGG - chr1_4:4444810-4444829 None:intergenic 10.0%
!!! TGATTTTTAATTTTAATGAA+TGG + chr1_4:4444813-4444832 Msa0144870:intron 10.0%
!!! AAAAGAATCTTTCTTTTTAA+GGG - chr1_4:4444775-4444794 None:intergenic 15.0%
!!! AAAAAGAATCTTTCTTTTTA+AGG - chr1_4:4444776-4444795 None:intergenic 15.0%
!! ATGTTAAATACTATTATGAA+TGG + chr1_4:4445138-4445157 Msa0144870:intron 15.0%
!! TATCTTATGTACATATTATA+AGG - chr1_4:4445319-4445338 None:intergenic 15.0%
!!! AAGATATTTTCAACTTATTT+TGG + chr1_4:4445333-4445352 Msa0144870:intron 15.0%
!!! AAAAGAATCTTTCTTTTTAA+GGG - chr1_4:4444775-4444794 None:intergenic 15.0%
!!! AAAAAGAATCTTTCTTTTTA+AGG - chr1_4:4444776-4444795 None:intergenic 15.0%
!! ATGTTAAATACTATTATGAA+TGG + chr1_4:4445138-4445157 Msa0144870:intron 15.0%
!! TATCTTATGTACATATTATA+AGG - chr1_4:4445319-4445338 None:intergenic 15.0%
!!! AAGATATTTTCAACTTATTT+TGG + chr1_4:4445333-4445352 Msa0144870:intron 15.0%
!! TATTTAGGAAGTTTGAATTA+TGG - chr1_4:4444354-4444373 None:intergenic 20.0%
!! GAAAACTCAAAAACAAAATT+TGG + chr1_4:4444500-4444519 Msa0144870:intron 20.0%
!! TTTAATTCCAAATTCTAACA+AGG + chr1_4:4444885-4444904 Msa0144870:CDS 20.0%
!!! TATTTTTCTTCTTATTCTTG+TGG + chr1_4:4444969-4444988 Msa0144870:intron 20.0%
!! ACTTATAGCTTATATGAAAA+CGG + chr1_4:4445385-4445404 Msa0144870:intron 20.0%
!! AATGTTATTACAGTTATCAA+TGG - chr1_4:4446348-4446367 None:intergenic 20.0%
!! AAGAATTCATCAATTAGAAA+AGG + chr1_4:4446370-4446389 Msa0144870:three_prime_UTR 20.0%
!! TATTTAGGAAGTTTGAATTA+TGG - chr1_4:4444354-4444373 None:intergenic 20.0%
!! GAAAACTCAAAAACAAAATT+TGG + chr1_4:4444500-4444519 Msa0144870:intron 20.0%
!! TTTAATTCCAAATTCTAACA+AGG + chr1_4:4444885-4444904 Msa0144870:CDS 20.0%
!!! TATTTTTCTTCTTATTCTTG+TGG + chr1_4:4444969-4444988 Msa0144870:intron 20.0%
!! ACTTATAGCTTATATGAAAA+CGG + chr1_4:4445385-4445404 Msa0144870:intron 20.0%
!! AATGTTATTACAGTTATCAA+TGG - chr1_4:4446348-4446367 None:intergenic 20.0%
!! AAGAATTCATCAATTAGAAA+AGG + chr1_4:4446370-4446389 Msa0144870:three_prime_UTR 20.0%
! TATCAAACATGCACTTAATA+TGG + chr1_4:4444464-4444483 Msa0144870:intron 25.0%
!!! TTTTGTTTGAAGAATGATGA+AGG + chr1_4:4444638-4444657 Msa0144870:intron 25.0%
!! AAGCTGCTTTAAATATTCAA+TGG - chr1_4:4445060-4445079 None:intergenic 25.0%
! ACTTATTTACGCTTATTTAC+TGG + chr1_4:4445247-4445266 Msa0144870:intron 25.0%
! AATTTATCCAAAGTGACTAT+AGG + chr1_4:4445650-4445669 Msa0144870:intron 25.0%
! ATTAATTCTGCAGATGTTAA+TGG + chr1_4:4445716-4445735 Msa0144870:intron 25.0%
!! AAGTTTTCAAACCTCTATTA+AGG + chr1_4:4445992-4446011 Msa0144870:CDS 25.0%
! TATCAAACATGCACTTAATA+TGG + chr1_4:4444464-4444483 Msa0144870:intron 25.0%
!!! TTTTGTTTGAAGAATGATGA+AGG + chr1_4:4444638-4444657 Msa0144870:intron 25.0%
!! AAGCTGCTTTAAATATTCAA+TGG - chr1_4:4445060-4445079 None:intergenic 25.0%
! ACTTATTTACGCTTATTTAC+TGG + chr1_4:4445247-4445266 Msa0144870:intron 25.0%
! AATTTATCCAAAGTGACTAT+AGG + chr1_4:4445650-4445669 Msa0144870:intron 25.0%
! ATTAATTCTGCAGATGTTAA+TGG + chr1_4:4445716-4445735 Msa0144870:intron 25.0%
!! AAGTTTTCAAACCTCTATTA+AGG + chr1_4:4445992-4446011 Msa0144870:CDS 25.0%
!! CATGAGTTGGTTGAATAAAT+TGG - chr1_4:4444178-4444197 None:intergenic 30.0%
CAATTTATTCAACCAACTCA+TGG + chr1_4:4444176-4444195 Msa0144870:CDS 30.0%
TTGAAAGATGATGAAGAAGA+TGG - chr1_4:4444204-4444223 None:intergenic 30.0%
TAACTTTATCTTGCACCATT+AGG + chr1_4:4444380-4444399 Msa0144870:intron 30.0%
AACTTTATCTTGCACCATTA+GGG + chr1_4:4444381-4444400 Msa0144870:intron 30.0%
TAAGTGCATGTTTGATATCA+CGG - chr1_4:4444461-4444480 None:intergenic 30.0%
! GTTCCATAATTTGTCTGAAA+AGG + chr1_4:4444730-4444749 Msa0144870:CDS 30.0%
! GAACCTTTTCAGACAAATTA+TGG - chr1_4:4444736-4444755 None:intergenic 30.0%
TTTAATGAATGGAACAGAGA+AGG + chr1_4:4444824-4444843 Msa0144870:intron 30.0%
TACATCACCTTGTTAGAATT+TGG - chr1_4:4444895-4444914 None:intergenic 30.0%
TAAAGCTTCAATGTTAGATG+AGG + chr1_4:4445034-4445053 Msa0144870:CDS 30.0%
TTGACAATTTGACATGGTTA+AGG - chr1_4:4445186-4445205 None:intergenic 30.0%
! AGTGTTGTTGATGAAACAAA+AGG + chr1_4:4445205-4445224 Msa0144870:intron 30.0%
TAAGCGTAAATAAGTCAATC+CGG - chr1_4:4445242-4445261 None:intergenic 30.0%
! ATTAGTCCATGATGGAATAA+TGG - chr1_4:4445677-4445696 None:intergenic 30.0%
AAGTAACAATTAGTCCATGA+TGG - chr1_4:4445685-4445704 None:intergenic 30.0%
AAATATTCATTGTTAGCAGG+CGG - chr1_4:4445873-4445892 None:intergenic 30.0%
CTAACAATGAATATTTCGCA+CGG + chr1_4:4445877-4445896 Msa0144870:CDS 30.0%
TCAAACATGAACCTTAATAG+AGG - chr1_4:4446006-4446025 None:intergenic 30.0%
!! AACTCTTATTTCTGATGTGA+AGG + chr1_4:4446080-4446099 Msa0144870:intron 30.0%
AACTGATTATGGATACAACA+AGG + chr1_4:4446130-4446149 Msa0144870:CDS 30.0%
ATTATGGATACAACAAGGAT+TGG + chr1_4:4446135-4446154 Msa0144870:CDS 30.0%
!!! ACCAGAGATAAAGGATTTTT+TGG + chr1_4:4446199-4446218 Msa0144870:three_prime_UTR 30.0%
TCCAAAAAATCCTTTATCTC+TGG - chr1_4:4446203-4446222 None:intergenic 30.0%
!!! TTGGACATGTCATTTTGAAA+AGG + chr1_4:4446218-4446237 Msa0144870:three_prime_UTR 30.0%
!!! TGGACATGTCATTTTGAAAA+GGG + chr1_4:4446219-4446238 Msa0144870:three_prime_UTR 30.0%
CTCAAATTTGACACTACATT+AGG + chr1_4:4446277-4446296 Msa0144870:three_prime_UTR 30.0%
!! CATGAGTTGGTTGAATAAAT+TGG - chr1_4:4444178-4444197 None:intergenic 30.0%
CAATTTATTCAACCAACTCA+TGG + chr1_4:4444176-4444195 Msa0144870:CDS 30.0%
TTGAAAGATGATGAAGAAGA+TGG - chr1_4:4444204-4444223 None:intergenic 30.0%
TAACTTTATCTTGCACCATT+AGG + chr1_4:4444380-4444399 Msa0144870:intron 30.0%
AACTTTATCTTGCACCATTA+GGG + chr1_4:4444381-4444400 Msa0144870:intron 30.0%
TAAGTGCATGTTTGATATCA+CGG - chr1_4:4444461-4444480 None:intergenic 30.0%
! GTTCCATAATTTGTCTGAAA+AGG + chr1_4:4444730-4444749 Msa0144870:CDS 30.0%
! GAACCTTTTCAGACAAATTA+TGG - chr1_4:4444736-4444755 None:intergenic 30.0%
TTTAATGAATGGAACAGAGA+AGG + chr1_4:4444824-4444843 Msa0144870:intron 30.0%
TACATCACCTTGTTAGAATT+TGG - chr1_4:4444895-4444914 None:intergenic 30.0%
TAAAGCTTCAATGTTAGATG+AGG + chr1_4:4445034-4445053 Msa0144870:CDS 30.0%
TTGACAATTTGACATGGTTA+AGG - chr1_4:4445186-4445205 None:intergenic 30.0%
! AGTGTTGTTGATGAAACAAA+AGG + chr1_4:4445205-4445224 Msa0144870:intron 30.0%
TAAGCGTAAATAAGTCAATC+CGG - chr1_4:4445242-4445261 None:intergenic 30.0%
! ATTAGTCCATGATGGAATAA+TGG - chr1_4:4445677-4445696 None:intergenic 30.0%
AAGTAACAATTAGTCCATGA+TGG - chr1_4:4445685-4445704 None:intergenic 30.0%
AAATATTCATTGTTAGCAGG+CGG - chr1_4:4445873-4445892 None:intergenic 30.0%
CTAACAATGAATATTTCGCA+CGG + chr1_4:4445877-4445896 Msa0144870:CDS 30.0%
TCAAACATGAACCTTAATAG+AGG - chr1_4:4446006-4446025 None:intergenic 30.0%
!! AACTCTTATTTCTGATGTGA+AGG + chr1_4:4446080-4446099 Msa0144870:intron 30.0%
AACTGATTATGGATACAACA+AGG + chr1_4:4446130-4446149 Msa0144870:CDS 30.0%
ATTATGGATACAACAAGGAT+TGG + chr1_4:4446135-4446154 Msa0144870:CDS 30.0%
!!! ACCAGAGATAAAGGATTTTT+TGG + chr1_4:4446199-4446218 Msa0144870:three_prime_UTR 30.0%
TCCAAAAAATCCTTTATCTC+TGG - chr1_4:4446203-4446222 None:intergenic 30.0%
!!! TTGGACATGTCATTTTGAAA+AGG + chr1_4:4446218-4446237 Msa0144870:three_prime_UTR 30.0%
!!! TGGACATGTCATTTTGAAAA+GGG + chr1_4:4446219-4446238 Msa0144870:three_prime_UTR 30.0%
CTCAAATTTGACACTACATT+AGG + chr1_4:4446277-4446296 Msa0144870:three_prime_UTR 30.0%
TATTAGCAAACAAGCCCTAA+TGG - chr1_4:4444398-4444417 None:intergenic 35.0%
! TTAGGGCTTGTTTGCTAATA+CGG + chr1_4:4444398-4444417 Msa0144870:intron 35.0%
CAACACTTGACAATTTGACA+TGG - chr1_4:4445192-4445211 None:intergenic 35.0%
! GTTGATGAAACAAAAGGCTA+AGG + chr1_4:4445211-4445230 Msa0144870:intron 35.0%
!!! CTTATTTTGGTAAGCTCTTC+AGG + chr1_4:4445346-4445365 Msa0144870:intron 35.0%
GATGATCCAAATTGAGTCAT+AGG - chr1_4:4445530-4445549 None:intergenic 35.0%
! TAATGGACCTATAGTCACTT+TGG - chr1_4:4445660-4445679 None:intergenic 35.0%
ATAGGTCCATTATTCCATCA+TGG + chr1_4:4445668-4445687 Msa0144870:intron 35.0%
CAGATGTTAATGGTGAGAAA+TGG + chr1_4:4445726-4445745 Msa0144870:intron 35.0%
TGAGTTGTTCAATCTTGATG+AGG + chr1_4:4445809-4445828 Msa0144870:CDS 35.0%
GAGTTGTTCAATCTTGATGA+GGG + chr1_4:4445810-4445829 Msa0144870:CDS 35.0%
AATCTTGATGAGGGTAATAG+TGG + chr1_4:4445819-4445838 Msa0144870:CDS 35.0%
AATATTCATTGTTAGCAGGC+GGG - chr1_4:4445872-4445891 None:intergenic 35.0%
GCGAAATATTCATTGTTAGC+AGG - chr1_4:4445876-4445895 None:intergenic 35.0%
TCAATCTGTAATCATACCCT+CGG + chr1_4:4445938-4445957 Msa0144870:CDS 35.0%
AGAGGTTTGAAAACTTGATG+AGG - chr1_4:4445988-4446007 None:intergenic 35.0%
GTTGTATCCATAATCAGTTG+TGG - chr1_4:4446129-4446148 None:intergenic 35.0%
GTTTATGACACATCAGAAGA+AGG - chr1_4:4446168-4446187 None:intergenic 35.0%
CTTGAATTCACCAGAGATAA+AGG + chr1_4:4446190-4446209 Msa0144870:three_prime_UTR 35.0%
! ACACTACATTAGGTTGTTTG+TGG + chr1_4:4446287-4446306 Msa0144870:three_prime_UTR 35.0%
TTGTGGTACAATTAGCAACA+CGG + chr1_4:4446304-4446323 Msa0144870:three_prime_UTR 35.0%
TATTAGCAAACAAGCCCTAA+TGG - chr1_4:4444398-4444417 None:intergenic 35.0%
! TTAGGGCTTGTTTGCTAATA+CGG + chr1_4:4444398-4444417 Msa0144870:intron 35.0%
CAACACTTGACAATTTGACA+TGG - chr1_4:4445192-4445211 None:intergenic 35.0%
! GTTGATGAAACAAAAGGCTA+AGG + chr1_4:4445211-4445230 Msa0144870:intron 35.0%
!!! CTTATTTTGGTAAGCTCTTC+AGG + chr1_4:4445346-4445365 Msa0144870:intron 35.0%
GATGATCCAAATTGAGTCAT+AGG - chr1_4:4445530-4445549 None:intergenic 35.0%
! TAATGGACCTATAGTCACTT+TGG - chr1_4:4445660-4445679 None:intergenic 35.0%
ATAGGTCCATTATTCCATCA+TGG + chr1_4:4445668-4445687 Msa0144870:intron 35.0%
CAGATGTTAATGGTGAGAAA+TGG + chr1_4:4445726-4445745 Msa0144870:intron 35.0%
TGAGTTGTTCAATCTTGATG+AGG + chr1_4:4445809-4445828 Msa0144870:CDS 35.0%
GAGTTGTTCAATCTTGATGA+GGG + chr1_4:4445810-4445829 Msa0144870:CDS 35.0%
AATCTTGATGAGGGTAATAG+TGG + chr1_4:4445819-4445838 Msa0144870:CDS 35.0%
AATATTCATTGTTAGCAGGC+GGG - chr1_4:4445872-4445891 None:intergenic 35.0%
GCGAAATATTCATTGTTAGC+AGG - chr1_4:4445876-4445895 None:intergenic 35.0%
TCAATCTGTAATCATACCCT+CGG + chr1_4:4445938-4445957 Msa0144870:CDS 35.0%
AGAGGTTTGAAAACTTGATG+AGG - chr1_4:4445988-4446007 None:intergenic 35.0%
GTTGTATCCATAATCAGTTG+TGG - chr1_4:4446129-4446148 None:intergenic 35.0%
GTTTATGACACATCAGAAGA+AGG - chr1_4:4446168-4446187 None:intergenic 35.0%
CTTGAATTCACCAGAGATAA+AGG + chr1_4:4446190-4446209 Msa0144870:three_prime_UTR 35.0%
! ACACTACATTAGGTTGTTTG+TGG + chr1_4:4446287-4446306 Msa0144870:three_prime_UTR 35.0%
TTGTGGTACAATTAGCAACA+CGG + chr1_4:4446304-4446323 Msa0144870:three_prime_UTR 35.0%
AATCAGGAGGAACAAGTGAT+GGG - chr1_4:4444143-4444162 None:intergenic 40.0%
TTGGAGAAGTCTTGAGAATC+AGG - chr1_4:4444159-4444178 None:intergenic 40.0%
AAGAAGATGGATCCATGAGT+TGG - chr1_4:4444191-4444210 None:intergenic 40.0%
!! TAAGAGATGGTGGAAGGATT+AGG - chr1_4:4444246-4444265 None:intergenic 40.0%
AAGAAGAGAAATGAGGAGGA+GGG - chr1_4:4444269-4444288 None:intergenic 40.0%
GAAGAGGAAGAAGAGAAATG+AGG - chr1_4:4444276-4444295 None:intergenic 40.0%
GATATATACCTGAGCAGAAG+AGG - chr1_4:4444292-4444311 None:intergenic 40.0%
TTCAGAGTTGCCATCATCAA+AGG + chr1_4:4444661-4444680 Msa0144870:CDS 40.0%
! CTTCTCTTTGAAGAAGAACG+TGG - chr1_4:4444698-4444717 None:intergenic 40.0%
AATGAATGGAACAGAGAAGG+AGG + chr1_4:4444827-4444846 Msa0144870:intron 40.0%
ACAAAAGGCTAAGGTTTGTC+CGG + chr1_4:4445220-4445239 Msa0144870:intron 40.0%
ATTGAGTCATAGGTCGAGTT+TGG - chr1_4:4445520-4445539 None:intergenic 40.0%
ACTCGACCTATGACTCAATT+TGG + chr1_4:4445521-4445540 Msa0144870:intron 40.0%
CTGAGCTTCACAATTAGCTA+AGG + chr1_4:4445560-4445579 Msa0144870:intron 40.0%
TTGCATCCAATGTCGTTATC+AGG + chr1_4:4445756-4445775 Msa0144870:CDS 40.0%
AGATTGAACAACTCAGTCTG+AGG - chr1_4:4445804-4445823 None:intergenic 40.0%
ATATTCATTGTTAGCAGGCG+GGG - chr1_4:4445871-4445890 None:intergenic 40.0%
TTTGACATGCTGCATTGTTC+TGG - chr1_4:4445918-4445937 None:intergenic 40.0%
CAACATGCCACAACTGATTA+TGG + chr1_4:4446119-4446138 Msa0144870:CDS 40.0%
AATCAGGAGGAACAAGTGAT+GGG - chr1_4:4444143-4444162 None:intergenic 40.0%
TTGGAGAAGTCTTGAGAATC+AGG - chr1_4:4444159-4444178 None:intergenic 40.0%
AAGAAGATGGATCCATGAGT+TGG - chr1_4:4444191-4444210 None:intergenic 40.0%
!! TAAGAGATGGTGGAAGGATT+AGG - chr1_4:4444246-4444265 None:intergenic 40.0%
AAGAAGAGAAATGAGGAGGA+GGG - chr1_4:4444269-4444288 None:intergenic 40.0%
GAAGAGGAAGAAGAGAAATG+AGG - chr1_4:4444276-4444295 None:intergenic 40.0%
GATATATACCTGAGCAGAAG+AGG - chr1_4:4444292-4444311 None:intergenic 40.0%
TTCAGAGTTGCCATCATCAA+AGG + chr1_4:4444661-4444680 Msa0144870:CDS 40.0%
! CTTCTCTTTGAAGAAGAACG+TGG - chr1_4:4444698-4444717 None:intergenic 40.0%
AATGAATGGAACAGAGAAGG+AGG + chr1_4:4444827-4444846 Msa0144870:intron 40.0%
ACAAAAGGCTAAGGTTTGTC+CGG + chr1_4:4445220-4445239 Msa0144870:intron 40.0%
ATTGAGTCATAGGTCGAGTT+TGG - chr1_4:4445520-4445539 None:intergenic 40.0%
ACTCGACCTATGACTCAATT+TGG + chr1_4:4445521-4445540 Msa0144870:intron 40.0%
CTGAGCTTCACAATTAGCTA+AGG + chr1_4:4445560-4445579 Msa0144870:intron 40.0%
TTGCATCCAATGTCGTTATC+AGG + chr1_4:4445756-4445775 Msa0144870:CDS 40.0%
AGATTGAACAACTCAGTCTG+AGG - chr1_4:4445804-4445823 None:intergenic 40.0%
ATATTCATTGTTAGCAGGCG+GGG - chr1_4:4445871-4445890 None:intergenic 40.0%
TTTGACATGCTGCATTGTTC+TGG - chr1_4:4445918-4445937 None:intergenic 40.0%
CAACATGCCACAACTGATTA+TGG + chr1_4:4446119-4446138 Msa0144870:CDS 40.0%
!! GAACAAGTGATGGGTGTGTT+TGG - chr1_4:4444134-4444153 None:intergenic 45.0%
GAATCAGGAGGAACAAGTGA+TGG - chr1_4:4444144-4444163 None:intergenic 45.0%
GAGAAGTCTTGAGAATCAGG+AGG - chr1_4:4444156-4444175 None:intergenic 45.0%
GTGGAAGGATTAGGAGGATA+GGG - chr1_4:4444237-4444256 None:intergenic 45.0%
GAAGAAGAGAAATGAGGAGG+AGG - chr1_4:4444270-4444289 None:intergenic 45.0%
GAGGAAGAAGAGAAATGAGG+AGG - chr1_4:4444273-4444292 None:intergenic 45.0%
TTGAAGAAGAACGTGGTGGT+GGG - chr1_4:4444691-4444710 None:intergenic 45.0%
TTTGAAGAAGAACGTGGTGG+TGG - chr1_4:4444692-4444711 None:intergenic 45.0%
! CTCTTTGAAGAAGAACGTGG+TGG - chr1_4:4444695-4444714 None:intergenic 45.0%
CATAGGTCGAGTTTGGACTT+CGG - chr1_4:4445513-4445532 None:intergenic 45.0%
CATCCAATGTCGTTATCAGG+AGG + chr1_4:4445759-4445778 Msa0144870:CDS 45.0%
! GATCCTCCTGATAACGACAT+TGG - chr1_4:4445765-4445784 None:intergenic 45.0%
TCAGTCTGAGGAAACATCGT+AGG - chr1_4:4445792-4445811 None:intergenic 45.0%
GAAGCTAAATTTGTCGCCGA+GGG - chr1_4:4445957-4445976 None:intergenic 45.0%
TGAAGCTAAATTTGTCGCCG+AGG - chr1_4:4445958-4445977 None:intergenic 45.0%
TCAGTTGTGGCATGTTGTTG+TGG - chr1_4:4446116-4446135 None:intergenic 45.0%
!! GAACAAGTGATGGGTGTGTT+TGG - chr1_4:4444134-4444153 None:intergenic 45.0%
GAATCAGGAGGAACAAGTGA+TGG - chr1_4:4444144-4444163 None:intergenic 45.0%
GAGAAGTCTTGAGAATCAGG+AGG - chr1_4:4444156-4444175 None:intergenic 45.0%
GTGGAAGGATTAGGAGGATA+GGG - chr1_4:4444237-4444256 None:intergenic 45.0%
GAAGAAGAGAAATGAGGAGG+AGG - chr1_4:4444270-4444289 None:intergenic 45.0%
GAGGAAGAAGAGAAATGAGG+AGG - chr1_4:4444273-4444292 None:intergenic 45.0%
TTGAAGAAGAACGTGGTGGT+GGG - chr1_4:4444691-4444710 None:intergenic 45.0%
TTTGAAGAAGAACGTGGTGG+TGG - chr1_4:4444692-4444711 None:intergenic 45.0%
! CTCTTTGAAGAAGAACGTGG+TGG - chr1_4:4444695-4444714 None:intergenic 45.0%
CATAGGTCGAGTTTGGACTT+CGG - chr1_4:4445513-4445532 None:intergenic 45.0%
CATCCAATGTCGTTATCAGG+AGG + chr1_4:4445759-4445778 Msa0144870:CDS 45.0%
! GATCCTCCTGATAACGACAT+TGG - chr1_4:4445765-4445784 None:intergenic 45.0%
TCAGTCTGAGGAAACATCGT+AGG - chr1_4:4445792-4445811 None:intergenic 45.0%
GAAGCTAAATTTGTCGCCGA+GGG - chr1_4:4445957-4445976 None:intergenic 45.0%
TGAAGCTAAATTTGTCGCCG+AGG - chr1_4:4445958-4445977 None:intergenic 45.0%
TCAGTTGTGGCATGTTGTTG+TGG - chr1_4:4446116-4446135 None:intergenic 45.0%
GGTGGAAGGATTAGGAGGAT+AGG - chr1_4:4444238-4444257 None:intergenic 50.0%
!! GAGATGGTGGAAGGATTAGG+AGG - chr1_4:4444243-4444262 None:intergenic 50.0%
ATGAGGAGGAGGGTAAGAGA+TGG - chr1_4:4444259-4444278 None:intergenic 50.0%
CTCTTCTTCCTCTTCTGCTC+AGG + chr1_4:4444281-4444300 Msa0144870:CDS 50.0%
GCAGAAACAAGCTCGTGAGT+TGG - chr1_4:4444433-4444452 None:intergenic 50.0%
! TGAAGAAGAACGTGGTGGTG+GGG - chr1_4:4444690-4444709 None:intergenic 50.0%
TGTCGTTATCAGGAGGATCG+CGG + chr1_4:4445766-4445785 Msa0144870:CDS 50.0%
GGTGGAAGGATTAGGAGGAT+AGG - chr1_4:4444238-4444257 None:intergenic 50.0%
!! GAGATGGTGGAAGGATTAGG+AGG - chr1_4:4444243-4444262 None:intergenic 50.0%
ATGAGGAGGAGGGTAAGAGA+TGG - chr1_4:4444259-4444278 None:intergenic 50.0%
CTCTTCTTCCTCTTCTGCTC+AGG + chr1_4:4444281-4444300 Msa0144870:CDS 50.0%
GCAGAAACAAGCTCGTGAGT+TGG - chr1_4:4444433-4444452 None:intergenic 50.0%
! TGAAGAAGAACGTGGTGGTG+GGG - chr1_4:4444690-4444709 None:intergenic 50.0%
TGTCGTTATCAGGAGGATCG+CGG + chr1_4:4445766-4445785 Msa0144870:CDS 50.0%
!! GGAGGGTAAGAGATGGTGGA+AGG - chr1_4:4444252-4444271 None:intergenic 55.0%
AGGAGGAGGGTAAGAGATGG+TGG - chr1_4:4444256-4444275 None:intergenic 55.0%
!! GGAGGGTAAGAGATGGTGGA+AGG - chr1_4:4444252-4444271 None:intergenic 55.0%
AGGAGGAGGGTAAGAGATGG+TGG - chr1_4:4444256-4444275 None:intergenic 55.0%
GGTGGGGCAGCCTTTGATGA+TGG - chr1_4:4444674-4444693 None:intergenic 60.0%
GGTGGGGCAGCCTTTGATGA+TGG - chr1_4:4444674-4444693 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 4444102 4446421 4444102 ID=Msa0144870;Name=Msa0144870
chr1_4 mRNA 4444102 4446421 4444102 ID=Msa0144870-mRNA-1;Parent=Msa0144870;Name=Msa0144870-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.8|0.66|1|1|1|6|236|267
chr1_4 exon 4444102 4444302 4444102 ID=Msa0144870-mRNA-1:exon:1865;Parent=Msa0144870-mRNA-1
chr1_4 exon 4444650 4444751 4444650 ID=Msa0144870-mRNA-1:exon:1866;Parent=Msa0144870-mRNA-1
chr1_4 exon 4444841 4444906 4444841 ID=Msa0144870-mRNA-1:exon:1867;Parent=Msa0144870-mRNA-1
chr1_4 exon 4445029 4445094 4445029 ID=Msa0144870-mRNA-1:exon:1868;Parent=Msa0144870-mRNA-1
chr1_4 exon 4445729 4446013 4445729 ID=Msa0144870-mRNA-1:exon:1869;Parent=Msa0144870-mRNA-1
chr1_4 exon 4446102 4446421 4446102 ID=Msa0144870-mRNA-1:exon:1870;Parent=Msa0144870-mRNA-1
chr1_4 CDS 4444102 4444302 4444102 ID=Msa0144870-mRNA-1:cds;Parent=Msa0144870-mRNA-1
chr1_4 CDS 4444650 4444751 4444650 ID=Msa0144870-mRNA-1:cds;Parent=Msa0144870-mRNA-1
chr1_4 CDS 4444841 4444906 4444841 ID=Msa0144870-mRNA-1:cds;Parent=Msa0144870-mRNA-1
chr1_4 CDS 4445029 4445094 4445029 ID=Msa0144870-mRNA-1:cds;Parent=Msa0144870-mRNA-1
chr1_4 CDS 4445729 4446013 4445729 ID=Msa0144870-mRNA-1:cds;Parent=Msa0144870-mRNA-1
chr1_4 CDS 4446102 4446185 4446102 ID=Msa0144870-mRNA-1:cds;Parent=Msa0144870-mRNA-1
chr1_4 three_prime_UTR 4446186 4446421 4446186 ID=Msa0144870-mRNA-1:three_prime_utr;Parent=Msa0144870-mRNA-1
Gene Sequence

>Msa0144870

ATGGCTGGTTCTTCTGATGATGATATACACCAAACACACCCATCACTTGTTCCTCCTGATTCTCAAGACTTCTCCAATTTATTCAACCAACTCATGGATCCATCTTCTTCATCATCTTTCAATTTTTCTGATCCCTATCCTCCTAATCCTTCCACCATCTCTTACCCTCCTCCTCATTTCTCTTCTTCCTCTTCTGCTCAGAATGATGAAGGTTCAGAGTTGCCATCATCAAAGGCTGCCCCACCACCACGTTCTTCTTCAAAGAGAAGCAGAGCTGCAGAGTTCCATAATTTGTCTGAAAAGAGAAGGAGGAGTAAGATTAATGAGAAATTGAAAGCTTTACAAAATTTAATTCCAAATTCTAACAAGACAGATAAAGCTTCAATGTTAGATGAGGCCATTGAATATTTAAAGCAGCTTCAGCTTCAAGTGCAAATGTTAATGGTGAGAAATGGTTATAGCTTGCATCCAATGTCGTTATCAGGAGGATCGCGGCCTACGATGTTTCCTCAGACTGAGTTGTTCAATCTTGATGAGGGTAATAGTGGATTTCACAATTCTAACAATGCAATTACCCCGCCTGCTAACAATGAATATTTCGCACGGCAAGCTTTTAGTTTTCCAGAACAATGCAGCATGTCAAATCAATCTGTAATCATACCCTCGGCGACAAATTTAGCTTCATTTGATACCTCATCAAGTTTTCAAACCTCTATTAAGGATGTTTTCAGCCACAACAACATGCCACAACTGATTATGGATACAACAAGGATTGGAAAAACTCCTTCTTCTGATGTGTCATAA
Protein sequence

>Msa0144870

MAGSSDDDIHQTHPSLVPPDSQDFSNLFNQLMDPSSSSSFNFSDPYPPNPSTISYPPPHFSSSSSAQNDEGSELPSSKAAPPPRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMVRNGYSLHPMSLSGGSRPTMFPQTELFNLDEGNSGFHNSNNAITPPANNEYFARQAFSFPEQCSMSNQSVIIPSATNLASFDTSSSFQTSIKDVFSHNNMPQLIMDTTRIGKTPSSDVS*