AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1441050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1441050 MtrunA17_Chr1g0153241 95.522 268 10 2 1 267 1 267 6.73e-179 493
Msa1441050 MtrunA17_Chr1g0153751 94.792 96 4 1 146 240 1 96 2.09e-60 186
Msa1441050 MtrunA17_Chr5g0402031 74.725 91 18 2 94 182 114 201 2.77e-34 126
Msa1441050 MtrunA17_Chr7g0262691 62.637 91 29 1 85 175 252 337 3.90e-29 114
Msa1441050 MtrunA17_Chr1g0193321 61.538 91 35 0 85 175 462 552 1.76e-28 114
Msa1441050 MtrunA17_Chr1g0182791 62.637 91 23 1 85 175 317 396 1.82e-28 113
Msa1441050 MtrunA17_Chr3g0095391 57.000 100 39 2 65 162 287 384 1.01e-26 108
Msa1441050 MtrunA17_Chr7g0231461 70.968 62 18 0 86 147 298 359 2.86e-23 98.6
Msa1441050 MtrunA17_Chr7g0271251 56.667 90 35 1 85 170 432 521 2.97e-22 95.9
Msa1441050 MtrunA17_Chr7g0270871 56.098 82 34 2 68 147 183 264 9.05e-20 87.8
Msa1441050 MtrunA17_Chr4g0074161 40.146 137 78 3 20 152 138 274 1.28e-19 87.4
Msa1441050 MtrunA17_Chr1g0190731 46.835 79 36 1 75 147 177 255 4.44e-17 79.7
Msa1441050 MtrunA17_Chr5g0393721 37.615 109 61 1 54 162 200 301 4.33e-16 76.6
Msa1441050 MtrunA17_Chr3g0134741 39.241 79 48 0 84 162 228 306 4.60e-14 70.9
Msa1441050 MtrunA17_Chr1g0207311 37.500 80 45 1 88 162 194 273 1.22e-13 69.3
Msa1441050 MtrunA17_Chr6g0484271 44.304 79 43 1 73 150 143 221 1.51e-13 68.9
Msa1441050 MtrunA17_Chr7g0234761 39.560 91 47 2 68 150 293 383 4.89e-13 68.6
Msa1441050 MtrunA17_Chr8g0365941 40.000 95 51 2 62 150 277 371 6.44e-13 68.2
Msa1441050 MtrunA17_Chr1g0207301 43.548 62 35 0 101 162 304 365 9.38e-13 67.4
Msa1441050 MtrunA17_Chr3g0144641 47.692 65 33 1 87 150 193 257 1.03e-12 67.4
Msa1441050 MtrunA17_Chr4g0035101 42.353 85 47 2 64 147 123 206 1.10e-12 67.0
Msa1441050 MtrunA17_Chr8g0339091 47.692 65 33 1 87 150 293 357 2.14e-12 66.6
Msa1441050 MtrunA17_Chr1g0152131 46.154 65 34 1 87 150 262 326 2.62e-12 66.2
Msa1441050 MtrunA17_Chr1g0152651 35.052 97 58 1 63 159 257 348 3.24e-12 65.9
Msa1441050 MtrunA17_Chr8g0363921 44.615 65 35 1 87 150 153 217 3.40e-12 65.1
Msa1441050 MtrunA17_Chr5g0415291 37.000 100 51 3 63 150 79 178 7.88e-12 63.5
Msa1441050 MtrunA17_Chr5g0421111 46.154 65 34 1 87 150 367 431 1.20e-11 64.3
Msa1441050 MtrunA17_Chr1g0185621 51.786 56 27 0 96 151 476 531 1.22e-11 64.7
Msa1441050 MtrunA17_Chr3g0131771 45.205 73 38 2 87 158 149 220 1.56e-11 63.5
Msa1441050 MtrunA17_Chr5g0435021 30.496 141 83 4 21 147 141 280 3.23e-11 62.4
Msa1441050 MtrunA17_Chr1g0184841 42.697 89 44 2 71 152 100 188 3.50e-11 62.4
Msa1441050 MtrunA17_Chr8g0386921 48.077 52 27 0 96 147 407 458 8.23e-11 62.0
Msa1441050 MtrunA17_Chr2g0320291 33.028 109 62 3 46 147 81 185 9.11e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1441050 AT4G36930.1 83.562 73 12 0 90 162 196 268 5.27e-35 129
Msa1441050 AT5G67110.1 47.590 166 72 4 5 160 2 162 1.15e-34 124
Msa1441050 AT1G09530.3 62.105 95 26 2 78 170 328 414 1.07e-28 114
Msa1441050 AT1G09530.2 62.105 95 26 2 78 170 328 414 1.07e-28 114
Msa1441050 AT1G09530.5 62.105 95 26 2 78 170 328 414 1.07e-28 114
Msa1441050 AT1G09530.1 62.105 95 26 2 78 170 328 414 1.07e-28 114
Msa1441050 AT1G09530.4 62.105 95 26 2 78 170 328 414 1.07e-28 114
Msa1441050 AT1G09530.6 62.105 95 26 2 78 170 328 414 1.07e-28 114
Msa1441050 AT2G20180.7 73.016 63 17 0 85 147 207 269 9.39e-26 105
Msa1441050 AT2G20180.1 73.016 63 17 0 85 147 207 269 9.39e-26 105
Msa1441050 AT2G20180.5 73.016 63 17 0 85 147 207 269 9.39e-26 105
Msa1441050 AT2G20180.4 73.016 63 17 0 85 147 278 340 2.61e-25 104
Msa1441050 AT2G20180.6 73.016 63 17 0 85 147 278 340 2.61e-25 104
Msa1441050 AT2G20180.2 73.016 63 17 0 85 147 278 340 2.61e-25 104
Msa1441050 AT2G20180.3 73.016 63 17 0 85 147 278 340 2.61e-25 104
Msa1441050 AT2G20180.8 67.143 70 23 0 77 146 270 339 3.68e-25 102
Msa1441050 AT4G00050.2 65.714 70 24 0 78 147 98 167 4.30e-24 99.0
Msa1441050 AT4G00050.3 65.714 70 24 0 78 147 200 269 9.43e-24 99.4
Msa1441050 AT4G00050.1 65.714 70 24 0 78 147 200 269 1.36e-23 99.0
Msa1441050 AT4G28800.1 54.762 84 37 1 85 168 249 331 1.64e-21 93.6
Msa1441050 AT4G28800.2 64.062 64 23 0 85 148 261 324 8.94e-21 91.7
Msa1441050 AT2G46970.3 37.956 137 69 2 68 190 184 318 1.04e-20 90.9
Msa1441050 AT2G46970.2 37.956 137 69 2 68 190 175 309 1.05e-20 90.9
Msa1441050 AT4G28815.2 59.375 64 26 0 85 148 68 131 1.13e-20 88.2
Msa1441050 AT2G46970.1 37.956 137 69 2 68 190 206 340 1.36e-20 90.9
Msa1441050 AT4G28815.1 59.375 64 26 0 85 148 144 207 3.75e-20 88.2
Msa1441050 AT4G28790.1 65.079 63 22 0 85 147 271 333 3.95e-20 89.4
Msa1441050 AT3G59060.1 54.651 86 36 1 85 170 250 332 5.28e-20 89.4
Msa1441050 AT3G59060.3 54.651 86 36 1 85 170 250 332 5.60e-20 89.4
Msa1441050 AT3G59060.2 54.651 86 36 1 85 170 250 332 5.60e-20 89.4
Msa1441050 AT3G59060.4 54.651 86 36 1 85 170 250 332 5.60e-20 89.4
Msa1441050 AT2G24260.2 55.556 72 28 1 80 147 26 97 6.91e-20 86.3
Msa1441050 AT4G28790.2 62.121 66 25 0 85 150 271 336 1.09e-19 87.4
Msa1441050 AT2G43010.2 58.824 85 30 1 86 170 252 331 1.54e-19 87.8
Msa1441050 AT2G43010.4 58.824 85 30 1 86 170 252 331 1.55e-19 87.8
Msa1441050 AT5G58010.1 47.778 90 40 2 83 165 97 186 1.58e-19 86.3
Msa1441050 AT2G43010.1 58.824 85 30 1 86 170 252 331 1.59e-19 87.8
Msa1441050 AT2G43010.3 58.824 85 30 1 86 170 259 338 1.94e-19 87.4
Msa1441050 AT2G24260.1 54.430 79 31 2 79 152 128 206 2.34e-19 86.7
Msa1441050 AT2G43010.5 58.824 85 30 1 86 170 294 373 2.81e-19 87.4
Msa1441050 AT4G30980.1 45.652 92 45 2 62 152 111 198 5.16e-19 85.1
Msa1441050 AT4G30980.2 45.652 92 45 2 62 152 159 246 1.69e-18 84.3
Msa1441050 AT5G61270.2 47.826 92 46 1 59 150 48 137 5.16e-18 82.0
Msa1441050 AT5G61270.3 47.826 92 46 1 59 150 48 137 5.16e-18 82.0
Msa1441050 AT5G61270.1 47.826 92 46 1 59 150 136 225 9.39e-18 82.4
Msa1441050 AT3G62090.1 54.545 66 30 0 88 153 168 233 1.58e-15 75.9
Msa1441050 AT3G62090.2 51.429 70 34 0 84 153 181 250 1.79e-15 75.9
Msa1441050 AT5G67110.3 36.145 166 69 5 5 160 2 140 2.45e-15 72.8
Msa1441050 AT4G33880.1 36.449 107 61 1 63 162 237 343 3.49e-15 74.7
Msa1441050 AT1G27740.1 36.634 101 60 1 62 162 148 244 8.03e-15 72.8
Msa1441050 AT4G28811.1 63.492 63 23 0 85 147 351 413 2.89e-14 72.8
Msa1441050 AT2G14760.3 37.000 100 62 1 64 162 228 327 6.20e-14 71.2
Msa1441050 AT5G67110.2 35.211 142 77 4 6 137 3 139 1.10e-13 67.4
Msa1441050 AT5G50915.3 43.038 79 41 2 76 150 124 202 3.69e-13 68.2
Msa1441050 AT5G50915.4 43.038 79 41 2 76 150 124 202 3.69e-13 68.2
Msa1441050 AT5G50915.1 43.038 79 41 2 76 150 124 202 4.34e-13 68.2
Msa1441050 AT5G50915.2 43.038 79 41 2 76 150 124 202 4.34e-13 68.2
Msa1441050 AT2G14760.1 36.709 79 50 0 84 162 236 314 6.31e-13 68.2
Msa1441050 AT5G43175.1 28.571 133 94 1 31 162 77 209 7.34e-13 66.6
Msa1441050 AT5G48560.2 47.692 65 33 1 87 150 303 367 1.35e-12 67.8
Msa1441050 AT3G07340.2 47.692 65 33 1 87 150 260 324 1.38e-12 67.4
Msa1441050 AT3G07340.1 47.692 65 33 1 87 150 260 324 1.46e-12 67.4
Msa1441050 AT5G48560.1 47.692 65 33 1 87 150 303 367 1.63e-12 67.4
Msa1441050 AT1G68920.3 47.692 65 33 1 87 150 304 368 1.71e-12 67.4
Msa1441050 AT1G68920.1 47.692 65 33 1 87 150 305 369 1.78e-12 67.4
Msa1441050 AT1G68920.4 47.692 65 33 1 87 150 305 369 1.78e-12 67.4
Msa1441050 AT1G68920.2 47.692 65 33 1 87 150 305 369 1.78e-12 67.4
Msa1441050 AT5G62610.2 39.362 94 50 3 87 177 155 244 2.01e-12 66.2
Msa1441050 AT5G62610.1 39.362 94 50 3 87 177 155 244 2.01e-12 66.2
Msa1441050 AT4G36540.2 46.154 65 34 1 87 150 143 207 2.53e-12 66.2
Msa1441050 AT4G36540.1 46.154 65 34 1 87 150 143 207 2.54e-12 66.2
Msa1441050 AT1G73830.2 44.615 65 35 1 87 150 149 213 4.51e-12 65.1
Msa1441050 AT1G73830.1 44.615 65 35 1 87 150 149 213 4.87e-12 64.7
Msa1441050 AT2G18300.2 46.154 65 34 1 87 150 187 251 5.96e-12 65.5
Msa1441050 AT2G18300.1 46.154 65 34 1 87 150 187 251 6.14e-12 65.1
Msa1441050 AT1G10120.2 46.154 65 34 1 87 150 208 272 6.76e-12 65.1
Msa1441050 AT1G10120.1 46.154 65 34 1 87 150 208 272 6.76e-12 65.1
Msa1441050 AT3G23690.1 44.615 65 35 1 87 150 193 257 7.20e-12 65.1
Msa1441050 AT2G18300.3 46.154 65 34 1 87 150 187 251 7.37e-12 65.1
Msa1441050 AT1G26260.4 44.615 65 35 1 87 150 225 289 8.74e-12 65.1
Msa1441050 AT1G26260.1 44.615 65 35 1 87 150 225 289 8.74e-12 65.1
Msa1441050 AT1G26260.6 44.615 65 35 1 87 150 225 289 8.74e-12 65.1
Msa1441050 AT1G26260.2 44.615 65 35 1 87 150 225 289 8.74e-12 65.1
Msa1441050 AT1G59640.1 44.615 65 35 1 87 150 138 202 8.95e-12 64.3
Msa1441050 AT1G26260.5 44.615 65 35 1 87 150 203 267 9.23e-12 65.1
Msa1441050 AT1G26260.3 44.615 65 35 1 87 150 174 238 9.37e-12 64.7
Msa1441050 AT4G34530.1 43.077 65 36 1 87 150 174 238 1.06e-11 64.7
Msa1441050 AT1G59640.2 46.774 62 32 1 87 147 138 199 1.88e-11 63.9
Msa1441050 AT1G02340.2 56.000 50 21 1 99 147 134 183 1.99e-11 63.5
Msa1441050 AT1G02340.1 56.000 50 21 1 99 147 141 190 2.04e-11 63.5
Msa1441050 AT1G18400.2 43.077 65 36 1 87 150 147 211 2.29e-11 62.8
Msa1441050 AT1G18400.1 43.077 65 36 1 87 150 147 211 2.56e-11 62.8
Msa1441050 AT1G25330.1 44.615 65 35 1 87 150 106 170 3.09e-11 62.0
Msa1441050 AT1G63650.3 53.846 52 24 0 96 147 406 457 4.09e-11 63.5
Msa1441050 AT1G63650.1 53.846 52 24 0 96 147 406 457 4.09e-11 63.5
Msa1441050 AT1G63650.2 53.846 52 24 0 96 147 406 457 4.09e-11 63.5
Msa1441050 AT1G66470.1 43.056 72 36 1 76 147 191 257 4.89e-11 62.4
Msa1441050 AT1G03040.1 42.045 88 41 2 75 152 125 212 7.32e-11 62.0
Msa1441050 AT1G03040.2 30.769 182 92 5 75 235 120 288 7.38e-11 61.6
Msa1441050 AT2G22770.1 53.846 52 24 0 96 147 133 184 8.77e-11 61.6

Find 70 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACATCACCTTGTTAGAATT+TGG 0.111527 tig0029200:+17666 Msa1441050:intergenic
CATGAGTTGGTTGAATAAAT+TGG 0.211961 tig0029200:+18379 Msa1441050:intergenic
CAACATGCCACAACTGATTA+TGG 0.244370 tig0029200:-16425 Msa1441050:CDS
ATTAATTCTGCAGATGTTAA+TGG 0.295896 tig0029200:-16828 Msa1441050:intron
CTTGAATTCACCAGAGATAA+AGG 0.298355 tig0029200:-16354 Msa1441050:three_prime_UTR
TTTGACATGCTGCATTGTTC+TGG 0.325901 tig0029200:+16629 Msa1441050:intergenic
CTCAAATTTGACACTACATT+AGG 0.351513 tig0029200:-16267 Msa1441050:three_prime_UTR
CTCTTCTTCCTCTTCTGCTC+AGG 0.354272 tig0029200:-18273 Msa1441050:intron
TAAGAGATGGTGGAAGGATT+AGG 0.357303 tig0029200:+18311 Msa1441050:intergenic
TTGGAGAAGTCTTGAGAATC+AGG 0.361248 tig0029200:+18398 Msa1441050:intergenic
GTTCCATAATTTGTCTGAAA+AGG 0.391347 tig0029200:-17828 Msa1441050:intron
TTGCATCCAATGTCGTTATC+AGG 0.395094 tig0029200:-16788 Msa1441050:CDS
GAACAAGTGATGGGTGTGTT+TGG 0.440894 tig0029200:+18423 Msa1441050:intergenic
AATGTTATTACAGTTATCAA+TGG 0.444309 tig0029200:+16199 Msa1441050:intergenic
AGGAGGAGGGTAAGAGATGG+TGG 0.449041 tig0029200:+18301 Msa1441050:intergenic
ACACTACATTAGGTTGTTTG+TGG 0.463808 tig0029200:-16257 Msa1441050:three_prime_UTR
GCGAAATATTCATTGTTAGC+AGG 0.465887 tig0029200:+16671 Msa1441050:intergenic
AAGCTGCTTTAAATATTCAA+TGG 0.465998 tig0029200:+17487 Msa1441050:intergenic
AATCTTGATGAGGGTAATAG+TGG 0.470391 tig0029200:-16725 Msa1441050:CDS
TTGAAAGATGATGAAGAAGA+TGG 0.470481 tig0029200:+18353 Msa1441050:intergenic
AAGAATTCATCAATTAGAAA+AGG 0.474846 tig0029200:-16174 Msa1441050:three_prime_UTR
CAATTTATTCAACCAACTCA+TGG 0.476360 tig0029200:-18378 Msa1441050:CDS
GGTGGGGCAGCCTTTGATGA+TGG 0.476408 tig0029200:+17887 Msa1441050:intergenic
GAAGAAGAGAAATGAGGAGG+AGG 0.480762 tig0029200:+18287 Msa1441050:intergenic
GGTGGAAGGATTAGGAGGAT+AGG 0.482360 tig0029200:+18319 Msa1441050:intergenic
TCAAACATGAACCTTAATAG+AGG 0.484571 tig0029200:+16541 Msa1441050:intergenic
TTTGAAGAAGAACGTGGTGG+TGG 0.492656 tig0029200:+17869 Msa1441050:intergenic
ATTATGGATACAACAAGGAT+TGG 0.493878 tig0029200:-16409 Msa1441050:CDS
GGAGGGTAAGAGATGGTGGA+AGG 0.497229 tig0029200:+18305 Msa1441050:intergenic
GTGGAAGGATTAGGAGGATA+GGG 0.512443 tig0029200:+18320 Msa1441050:intergenic
AATATTCATTGTTAGCAGGC+GGG 0.525894 tig0029200:+16675 Msa1441050:intergenic
GATATATACCTGAGCAGAAG+AGG 0.528648 tig0029200:+18265 Msa1441050:intergenic
GAATCAGGAGGAACAAGTGA+TGG 0.531363 tig0029200:+18413 Msa1441050:intergenic
GAGATGGTGGAAGGATTAGG+AGG 0.532760 tig0029200:+18314 Msa1441050:intergenic
AAGAAGAGAAATGAGGAGGA+GGG 0.533296 tig0029200:+18288 Msa1441050:intergenic
ATGAGGAGGAGGGTAAGAGA+TGG 0.537204 tig0029200:+18298 Msa1441050:intergenic
TTGAAGAAGAACGTGGTGGT+GGG 0.545725 tig0029200:+17870 Msa1441050:intergenic
ATATTCATTGTTAGCAGGCG+GGG 0.547212 tig0029200:+16676 Msa1441050:intergenic
TTCAGAGTTGCCATCATCAA+AGG 0.550812 tig0029200:-17897 Msa1441050:CDS
AATGAATGGAACAGAGAAGG+AGG 0.550832 tig0029200:-17731 Msa1441050:intron
CAGATGTTAATGGTGAGAAA+TGG 0.552941 tig0029200:-16818 Msa1441050:CDS
GAAGAGGAAGAAGAGAAATG+AGG 0.557122 tig0029200:+18281 None:intergenic
ACAATAATAACAATAATGGC+TGG 0.560564 tig0029200:-18467 None:intergenic
GTTTATGACACATCAGAAGA+AGG 0.583034 tig0029200:+16379 Msa1441050:intergenic
TGAAGAAGAACGTGGTGGTG+GGG 0.583658 tig0029200:+17871 Msa1441050:intergenic
TGAGTTGTTCAATCTTGATG+AGG 0.583812 tig0029200:-16735 Msa1441050:CDS
AAATATTCATTGTTAGCAGG+CGG 0.584130 tig0029200:+16674 Msa1441050:intergenic
TCAATCTGTAATCATACCCT+CGG 0.590382 tig0029200:-16606 Msa1441050:CDS
TCAGTTGTGGCATGTTGTTG+TGG 0.593873 tig0029200:+16431 Msa1441050:intergenic
TTTAATTCCAAATTCTAACA+AGG 0.599565 tig0029200:-17673 Msa1441050:intron
GAGGAAGAAGAGAAATGAGG+AGG 0.607406 tig0029200:+18284 Msa1441050:intergenic
GAGTTGTTCAATCTTGATGA+GGG 0.608970 tig0029200:-16734 Msa1441050:CDS
TAAAGCTTCAATGTTAGATG+AGG 0.610444 tig0029200:-17510 Msa1441050:CDS
AGAGGTTTGAAAACTTGATG+AGG 0.611385 tig0029200:+16559 Msa1441050:intergenic
AATCAGGAGGAACAAGTGAT+GGG 0.615697 tig0029200:+18414 Msa1441050:intergenic
TGAAGCTAAATTTGTCGCCG+AGG 0.617569 tig0029200:+16589 Msa1441050:intergenic
GATCCTCCTGATAACGACAT+TGG 0.621566 tig0029200:+16782 Msa1441050:intergenic
AAGAAGATGGATCCATGAGT+TGG 0.625627 tig0029200:+18366 Msa1441050:intergenic
GTTGTATCCATAATCAGTTG+TGG 0.626275 tig0029200:+16418 Msa1441050:intergenic
CTTCTCTTTGAAGAAGAACG+TGG 0.628949 tig0029200:+17863 Msa1441050:intergenic
AGATTGAACAACTCAGTCTG+AGG 0.648355 tig0029200:+16743 Msa1441050:intergenic
CTCTTTGAAGAAGAACGTGG+TGG 0.649691 tig0029200:+17866 Msa1441050:intergenic
GAAGCTAAATTTGTCGCCGA+GGG 0.651831 tig0029200:+16590 Msa1441050:intergenic
TCAGTCTGAGGAAACATCGT+AGG 0.657116 tig0029200:+16755 Msa1441050:intergenic
CTAACAATGAATATTTCGCA+CGG 0.657592 tig0029200:-16667 Msa1441050:CDS
CATCCAATGTCGTTATCAGG+AGG 0.666461 tig0029200:-16785 Msa1441050:CDS
TGTCGTTATCAGGAGGATCG+CGG 0.666590 tig0029200:-16778 Msa1441050:CDS
TTGTGGTACAATTAGCAACA+CGG 0.667238 tig0029200:-16240 Msa1441050:three_prime_UTR
GAGAAGTCTTGAGAATCAGG+AGG 0.678745 tig0029200:+18401 Msa1441050:intergenic
AACTGATTATGGATACAACA+AGG 0.695121 tig0029200:-16414 Msa1441050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAGTTATAGTAATATTT+AGG + tig0029200:16412-16431 Msa1441050:intergenic 10.0%
!! ATAAAGTTATAGTAATATTT+AGG + tig0029200:16412-16431 Msa1441050:intergenic 10.0%
!!! AAAAGAATCTTTCTTTTTAA+GGG + tig0029200:16814-16833 Msa1441050:intergenic 15.0%
!!! AAAAAGAATCTTTCTTTTTA+AGG + tig0029200:16815-16834 Msa1441050:intergenic 15.0%
!! ATTAAAATTCAAAATCAGAA+AGG + tig0029200:16849-16868 Msa1441050:intergenic 15.0%
!!! TGATTTTGAATTTTAATGAA+TGG - tig0029200:16852-16871 Msa1441050:intron 15.0%
!! TATCTTATGTACATATTATA+AGG + tig0029200:17372-17391 Msa1441050:intergenic 15.0%
!!! AAGATATTTTCAACTTATTT+TGG - tig0029200:17386-17405 Msa1441050:intron 15.0%
!!! AAAAGAATCTTTCTTTTTAA+GGG + tig0029200:16814-16833 Msa1441050:intergenic 15.0%
!!! AAAAAGAATCTTTCTTTTTA+AGG + tig0029200:16815-16834 Msa1441050:intergenic 15.0%
!! ATTAAAATTCAAAATCAGAA+AGG + tig0029200:16849-16868 Msa1441050:intergenic 15.0%
!!! TGATTTTGAATTTTAATGAA+TGG - tig0029200:16852-16871 Msa1441050:intron 15.0%
!! TATCTTATGTACATATTATA+AGG + tig0029200:17372-17391 Msa1441050:intergenic 15.0%
!!! AAGATATTTTCAACTTATTT+TGG - tig0029200:17386-17405 Msa1441050:intron 15.0%
!! TATTTAGGAAGTTTGAATTA+TGG + tig0029200:16397-16416 Msa1441050:intergenic 20.0%
!! GAAAACTCAAAAACAAAATT+TGG - tig0029200:16543-16562 Msa1441050:intron 20.0%
!! TTTAATTCCAAATTCTAACA+AGG - tig0029200:16924-16943 Msa1441050:intron 20.0%
!!! TATTTTTCTTCTTATTCTTG+TGG - tig0029200:17022-17041 Msa1441050:intron 20.0%
!! ATGTTAAATACTGTTATGAA+TGG - tig0029200:17191-17210 Msa1441050:intron 20.0%
!! ACTTATAGCTTATATGAAAA+CGG - tig0029200:17438-17457 Msa1441050:intron 20.0%
!! AATGTTATTACAGTTATCAA+TGG + tig0029200:18401-18420 Msa1441050:intergenic 20.0%
!! AAGAATTCATCAATTAGAAA+AGG - tig0029200:18423-18442 Msa1441050:CDS 20.0%
!! TATTTAGGAAGTTTGAATTA+TGG + tig0029200:16397-16416 Msa1441050:intergenic 20.0%
!! GAAAACTCAAAAACAAAATT+TGG - tig0029200:16543-16562 Msa1441050:intron 20.0%
!! TTTAATTCCAAATTCTAACA+AGG - tig0029200:16924-16943 Msa1441050:intron 20.0%
!!! TATTTTTCTTCTTATTCTTG+TGG - tig0029200:17022-17041 Msa1441050:intron 20.0%
!! ATGTTAAATACTGTTATGAA+TGG - tig0029200:17191-17210 Msa1441050:intron 20.0%
!! ACTTATAGCTTATATGAAAA+CGG - tig0029200:17438-17457 Msa1441050:intron 20.0%
!! AATGTTATTACAGTTATCAA+TGG + tig0029200:18401-18420 Msa1441050:intergenic 20.0%
!! AAGAATTCATCAATTAGAAA+AGG - tig0029200:18423-18442 Msa1441050:CDS 20.0%
! TATCAAACATGCACTTAATA+TGG - tig0029200:16507-16526 Msa1441050:intron 25.0%
!!! TTTTGTTTGAAGAATGATGA+AGG - tig0029200:16677-16696 Msa1441050:CDS 25.0%
!! AAGCTGCTTTAAATATTCAA+TGG + tig0029200:17113-17132 Msa1441050:intergenic 25.0%
! ACTTATTTACGCTTATTTAC+TGG - tig0029200:17300-17319 Msa1441050:intron 25.0%
! AATTTATCCAAAGTGACTAT+AGG - tig0029200:17703-17722 Msa1441050:CDS 25.0%
! ATTAATTCTGCAGATGTTAA+TGG - tig0029200:17769-17788 Msa1441050:intron 25.0%
!! AAGTTTTCAAACCTCTATTA+AGG - tig0029200:18045-18064 Msa1441050:intron 25.0%
! TATCAAACATGCACTTAATA+TGG - tig0029200:16507-16526 Msa1441050:intron 25.0%
!!! TTTTGTTTGAAGAATGATGA+AGG - tig0029200:16677-16696 Msa1441050:CDS 25.0%
!! AAGCTGCTTTAAATATTCAA+TGG + tig0029200:17113-17132 Msa1441050:intergenic 25.0%
! ACTTATTTACGCTTATTTAC+TGG - tig0029200:17300-17319 Msa1441050:intron 25.0%
! AATTTATCCAAAGTGACTAT+AGG - tig0029200:17703-17722 Msa1441050:CDS 25.0%
! ATTAATTCTGCAGATGTTAA+TGG - tig0029200:17769-17788 Msa1441050:intron 25.0%
!! AAGTTTTCAAACCTCTATTA+AGG - tig0029200:18045-18064 Msa1441050:intron 25.0%
!! CATGAGTTGGTTGAATAAAT+TGG + tig0029200:16221-16240 Msa0880070:intergenic 30.0%
CAATTTATTCAACCAACTCA+TGG - tig0029200:16219-16238 Msa1441050:three_prime_UTR 30.0%
TTGAAAGATGATGAAGAAGA+TGG + tig0029200:16247-16266 Msa1441050:intergenic 30.0%
TAACTTTATCTTGCACCATT+AGG - tig0029200:16423-16442 Msa1441050:CDS 30.0%
AACTTTATCTTGCACCATTA+GGG - tig0029200:16424-16443 Msa1441050:CDS 30.0%
TAAGTGCATGTTTGATATCA+CGG + tig0029200:16504-16523 Msa1441050:intergenic 30.0%
! GTTCCATAATTTGTCTGAAA+AGG - tig0029200:16769-16788 Msa1441050:CDS 30.0%
! GAACCTTTTCAGACAAATTA+TGG + tig0029200:16775-16794 Msa1441050:intergenic 30.0%
TTTAATGAATGGAACAGAGA+AGG - tig0029200:16863-16882 Msa1441050:intron 30.0%
TACATCACCTTGTTAGAATT+TGG + tig0029200:16934-16953 Msa1441050:intergenic 30.0%
TAAAGCTTCAATGTTAGATG+AGG - tig0029200:17087-17106 Msa1441050:intron 30.0%
TTGACAATTTGACATGGTTA+AGG + tig0029200:17239-17258 Msa1441050:intergenic 30.0%
! AGTGTTGTTGATGAAACAAA+AGG - tig0029200:17258-17277 Msa1441050:intron 30.0%
TAAGCGTAAATAAGTCAATC+CGG + tig0029200:17295-17314 Msa1441050:intergenic 30.0%
! ATTAGTCCATGATGGAATAA+TGG + tig0029200:17730-17749 Msa1441050:intergenic 30.0%
AAGTAACAATTAGTCCATGA+TGG + tig0029200:17738-17757 Msa1441050:intergenic 30.0%
AAATATTCATTGTTAGCAGG+CGG + tig0029200:17926-17945 Msa1441050:intergenic 30.0%
CTAACAATGAATATTTCGCA+CGG - tig0029200:17930-17949 Msa1441050:intron 30.0%
TCAAACATGAACCTTAATAG+AGG + tig0029200:18059-18078 Msa1441050:intergenic 30.0%
!! AACTCTTATTTCTGATGTGA+AGG - tig0029200:18133-18152 Msa1441050:intron 30.0%
AACTGATTATGGATACAACA+AGG - tig0029200:18183-18202 Msa1441050:intron 30.0%
ATTATGGATACAACAAGGAT+TGG - tig0029200:18188-18207 Msa1441050:intron 30.0%
!!! ACCAGAGATAAAGGATTTTT+TGG - tig0029200:18252-18271 Msa1441050:intron 30.0%
TCCAAAAAATCCTTTATCTC+TGG + tig0029200:18256-18275 Msa1441050:intergenic 30.0%
!!! TTGGACATGTCATTTTGAAA+AGG - tig0029200:18271-18290 Msa1441050:intron 30.0%
!!! TGGACATGTCATTTTGAAAA+GGG - tig0029200:18272-18291 Msa1441050:intron 30.0%
CTCAAATTTGACACTACATT+AGG - tig0029200:18330-18349 Msa1441050:CDS 30.0%
!! CATGAGTTGGTTGAATAAAT+TGG + tig0029200:16221-16240 Msa1441050:intergenic 30.0%
CAATTTATTCAACCAACTCA+TGG - tig0029200:16219-16238 Msa1441050:three_prime_UTR 30.0%
TTGAAAGATGATGAAGAAGA+TGG + tig0029200:16247-16266 Msa1441050:intergenic 30.0%
TAACTTTATCTTGCACCATT+AGG - tig0029200:16423-16442 Msa1441050:CDS 30.0%
AACTTTATCTTGCACCATTA+GGG - tig0029200:16424-16443 Msa1441050:CDS 30.0%
TAAGTGCATGTTTGATATCA+CGG + tig0029200:16504-16523 Msa1441050:intergenic 30.0%
! GTTCCATAATTTGTCTGAAA+AGG - tig0029200:16769-16788 Msa1441050:CDS 30.0%
! GAACCTTTTCAGACAAATTA+TGG + tig0029200:16775-16794 Msa1441050:intergenic 30.0%
TTTAATGAATGGAACAGAGA+AGG - tig0029200:16863-16882 Msa1441050:intron 30.0%
TACATCACCTTGTTAGAATT+TGG + tig0029200:16934-16953 Msa1441050:intergenic 30.0%
TAAAGCTTCAATGTTAGATG+AGG - tig0029200:17087-17106 Msa1441050:intron 30.0%
TTGACAATTTGACATGGTTA+AGG + tig0029200:17239-17258 Msa1441050:intergenic 30.0%
! AGTGTTGTTGATGAAACAAA+AGG - tig0029200:17258-17277 Msa1441050:intron 30.0%
TAAGCGTAAATAAGTCAATC+CGG + tig0029200:17295-17314 Msa1441050:intergenic 30.0%
! ATTAGTCCATGATGGAATAA+TGG + tig0029200:17730-17749 Msa1441050:intergenic 30.0%
AAGTAACAATTAGTCCATGA+TGG + tig0029200:17738-17757 Msa1441050:intergenic 30.0%
AAATATTCATTGTTAGCAGG+CGG + tig0029200:17926-17945 Msa1441050:intergenic 30.0%
CTAACAATGAATATTTCGCA+CGG - tig0029200:17930-17949 Msa1441050:intron 30.0%
TCAAACATGAACCTTAATAG+AGG + tig0029200:18059-18078 Msa1441050:intergenic 30.0%
!! AACTCTTATTTCTGATGTGA+AGG - tig0029200:18133-18152 Msa1441050:intron 30.0%
AACTGATTATGGATACAACA+AGG - tig0029200:18183-18202 Msa1441050:intron 30.0%
ATTATGGATACAACAAGGAT+TGG - tig0029200:18188-18207 Msa1441050:intron 30.0%
!!! ACCAGAGATAAAGGATTTTT+TGG - tig0029200:18252-18271 Msa1441050:intron 30.0%
TCCAAAAAATCCTTTATCTC+TGG + tig0029200:18256-18275 Msa1441050:intergenic 30.0%
!!! TTGGACATGTCATTTTGAAA+AGG - tig0029200:18271-18290 Msa1441050:intron 30.0%
!!! TGGACATGTCATTTTGAAAA+GGG - tig0029200:18272-18291 Msa1441050:intron 30.0%
CTCAAATTTGACACTACATT+AGG - tig0029200:18330-18349 Msa1441050:CDS 30.0%
TATTAGCAAACAAGCCCTAA+TGG + tig0029200:16441-16460 Msa1441050:intergenic 35.0%
! TTAGGGCTTGTTTGCTAATA+CGG - tig0029200:16441-16460 Msa1441050:CDS 35.0%
CAACACTTGACAATTTGACA+TGG + tig0029200:17245-17264 Msa1441050:intergenic 35.0%
! GTTGATGAAACAAAAGGCTA+AGG - tig0029200:17264-17283 Msa1441050:intron 35.0%
!!! CTTATTTTGGTAAGCTCTTC+AGG - tig0029200:17399-17418 Msa1441050:intron 35.0%
GATGATCCAAATTGAGTCAT+AGG + tig0029200:17583-17602 Msa1441050:intergenic 35.0%
! TAATGGACCTATAGTCACTT+TGG + tig0029200:17713-17732 Msa1441050:intergenic 35.0%
ATAGGTCCATTATTCCATCA+TGG - tig0029200:17721-17740 Msa1441050:intron 35.0%
CAGATGTTAATGGTGAGAAA+TGG - tig0029200:17779-17798 Msa1441050:intron 35.0%
TGAGTTGTTCAATCTTGATG+AGG - tig0029200:17862-17881 Msa1441050:CDS 35.0%
GAGTTGTTCAATCTTGATGA+GGG - tig0029200:17863-17882 Msa1441050:CDS 35.0%
AATCTTGATGAGGGTAATAG+TGG - tig0029200:17872-17891 Msa1441050:CDS 35.0%
AATATTCATTGTTAGCAGGC+GGG + tig0029200:17925-17944 Msa1441050:intergenic 35.0%
GCGAAATATTCATTGTTAGC+AGG + tig0029200:17929-17948 Msa1441050:intergenic 35.0%
TCAATCTGTAATCATACCCT+CGG - tig0029200:17991-18010 Msa1441050:intron 35.0%
AGAGGTTTGAAAACTTGATG+AGG + tig0029200:18041-18060 Msa1441050:intergenic 35.0%
GTTGTATCCATAATCAGTTG+TGG + tig0029200:18182-18201 Msa1441050:intergenic 35.0%
GTTTATGACACATCAGAAGA+AGG + tig0029200:18221-18240 Msa1441050:intergenic 35.0%
CTTGAATTCACCAGAGATAA+AGG - tig0029200:18243-18262 Msa1441050:intron 35.0%
! ACACTACATTAGGTTGTTTG+TGG - tig0029200:18340-18359 Msa1441050:CDS 35.0%
TTGTGGTACAATTAGCAACA+CGG - tig0029200:18357-18376 Msa1441050:CDS 35.0%
TATTAGCAAACAAGCCCTAA+TGG + tig0029200:16441-16460 Msa1441050:intergenic 35.0%
! TTAGGGCTTGTTTGCTAATA+CGG - tig0029200:16441-16460 Msa1441050:CDS 35.0%
CAACACTTGACAATTTGACA+TGG + tig0029200:17245-17264 Msa1441050:intergenic 35.0%
! GTTGATGAAACAAAAGGCTA+AGG - tig0029200:17264-17283 Msa1441050:intron 35.0%
!!! CTTATTTTGGTAAGCTCTTC+AGG - tig0029200:17399-17418 Msa1441050:intron 35.0%
GATGATCCAAATTGAGTCAT+AGG + tig0029200:17583-17602 Msa1441050:intergenic 35.0%
! TAATGGACCTATAGTCACTT+TGG + tig0029200:17713-17732 Msa1441050:intergenic 35.0%
ATAGGTCCATTATTCCATCA+TGG - tig0029200:17721-17740 Msa1441050:intron 35.0%
CAGATGTTAATGGTGAGAAA+TGG - tig0029200:17779-17798 Msa1441050:intron 35.0%
TGAGTTGTTCAATCTTGATG+AGG - tig0029200:17862-17881 Msa1441050:CDS 35.0%
GAGTTGTTCAATCTTGATGA+GGG - tig0029200:17863-17882 Msa1441050:CDS 35.0%
AATCTTGATGAGGGTAATAG+TGG - tig0029200:17872-17891 Msa1441050:CDS 35.0%
AATATTCATTGTTAGCAGGC+GGG + tig0029200:17925-17944 Msa1441050:intergenic 35.0%
GCGAAATATTCATTGTTAGC+AGG + tig0029200:17929-17948 Msa1441050:intergenic 35.0%
TCAATCTGTAATCATACCCT+CGG - tig0029200:17991-18010 Msa1441050:intron 35.0%
AGAGGTTTGAAAACTTGATG+AGG + tig0029200:18041-18060 Msa1441050:intergenic 35.0%
GTTGTATCCATAATCAGTTG+TGG + tig0029200:18182-18201 Msa1441050:intergenic 35.0%
GTTTATGACACATCAGAAGA+AGG + tig0029200:18221-18240 Msa1441050:intergenic 35.0%
CTTGAATTCACCAGAGATAA+AGG - tig0029200:18243-18262 Msa1441050:intron 35.0%
! ACACTACATTAGGTTGTTTG+TGG - tig0029200:18340-18359 Msa1441050:CDS 35.0%
TTGTGGTACAATTAGCAACA+CGG - tig0029200:18357-18376 Msa1441050:CDS 35.0%
AATCAGGAGGAACAAGTGAT+GGG + tig0029200:16186-16205 Msa0880070:intergenic 40.0%
TTGGAGAAGTCTTGAGAATC+AGG + tig0029200:16202-16221 Msa0880070:intergenic 40.0%
AAGAAGATGGATCCATGAGT+TGG + tig0029200:16234-16253 Msa1441050:intergenic 40.0%
!! TAAGAGATGGTGGAAGGATT+AGG + tig0029200:16289-16308 Msa1441050:intergenic 40.0%
AAGAAGAGAAATGAGGAGGA+GGG + tig0029200:16312-16331 Msa1441050:intergenic 40.0%
GAAGAGGAAGAAGAGAAATG+AGG + tig0029200:16319-16338 Msa1441050:intergenic 40.0%
GATATATACCTGAGCAGAAG+AGG + tig0029200:16335-16354 Msa1441050:intergenic 40.0%
TTCAGAGTTGCCATCATCAA+AGG - tig0029200:16700-16719 Msa1441050:CDS 40.0%
! CTTCTCTTTGAAGAAGAACG+TGG + tig0029200:16737-16756 Msa1441050:intergenic 40.0%
AATGAATGGAACAGAGAAGG+AGG - tig0029200:16866-16885 Msa1441050:intron 40.0%
ACAAAAGGCTAAGGTTTGTC+CGG - tig0029200:17273-17292 Msa1441050:intron 40.0%
ATTGAGTCATAGGTCGAGTT+TGG + tig0029200:17573-17592 Msa1441050:intergenic 40.0%
ACTCGACCTATGACTCAATT+TGG - tig0029200:17574-17593 Msa1441050:intron 40.0%
CTGAGCTTCACAATTAGCTA+AGG - tig0029200:17613-17632 Msa1441050:intron 40.0%
TTGCATCCAATGTCGTTATC+AGG - tig0029200:17809-17828 Msa1441050:intron 40.0%
AGATTGAACAACTCAGTCTG+AGG + tig0029200:17857-17876 Msa1441050:intergenic 40.0%
ATATTCATTGTTAGCAGGCG+GGG + tig0029200:17924-17943 Msa1441050:intergenic 40.0%
TTTGACATGCTGCATTGTTC+TGG + tig0029200:17971-17990 Msa1441050:intergenic 40.0%
CAACATGCCACAACTGATTA+TGG - tig0029200:18172-18191 Msa1441050:intron 40.0%
AATCAGGAGGAACAAGTGAT+GGG + tig0029200:16186-16205 Msa1441050:intergenic 40.0%
TTGGAGAAGTCTTGAGAATC+AGG + tig0029200:16202-16221 Msa1441050:intergenic 40.0%
AAGAAGATGGATCCATGAGT+TGG + tig0029200:16234-16253 Msa1441050:intergenic 40.0%
!! TAAGAGATGGTGGAAGGATT+AGG + tig0029200:16289-16308 Msa1441050:intergenic 40.0%
AAGAAGAGAAATGAGGAGGA+GGG + tig0029200:16312-16331 Msa1441050:intergenic 40.0%
GAAGAGGAAGAAGAGAAATG+AGG + tig0029200:16319-16338 Msa1441050:intergenic 40.0%
GATATATACCTGAGCAGAAG+AGG + tig0029200:16335-16354 Msa1441050:intergenic 40.0%
TTCAGAGTTGCCATCATCAA+AGG - tig0029200:16700-16719 Msa1441050:CDS 40.0%
! CTTCTCTTTGAAGAAGAACG+TGG + tig0029200:16737-16756 Msa1441050:intergenic 40.0%
AATGAATGGAACAGAGAAGG+AGG - tig0029200:16866-16885 Msa1441050:intron 40.0%
ACAAAAGGCTAAGGTTTGTC+CGG - tig0029200:17273-17292 Msa1441050:intron 40.0%
ATTGAGTCATAGGTCGAGTT+TGG + tig0029200:17573-17592 Msa1441050:intergenic 40.0%
ACTCGACCTATGACTCAATT+TGG - tig0029200:17574-17593 Msa1441050:intron 40.0%
CTGAGCTTCACAATTAGCTA+AGG - tig0029200:17613-17632 Msa1441050:intron 40.0%
TTGCATCCAATGTCGTTATC+AGG - tig0029200:17809-17828 Msa1441050:intron 40.0%
AGATTGAACAACTCAGTCTG+AGG + tig0029200:17857-17876 Msa1441050:intergenic 40.0%
ATATTCATTGTTAGCAGGCG+GGG + tig0029200:17924-17943 Msa1441050:intergenic 40.0%
TTTGACATGCTGCATTGTTC+TGG + tig0029200:17971-17990 Msa1441050:intergenic 40.0%
CAACATGCCACAACTGATTA+TGG - tig0029200:18172-18191 Msa1441050:intron 40.0%
!! GAACAAGTGATGGGTGTGTT+TGG + tig0029200:16177-16196 Msa0880070:intergenic 45.0%
GAATCAGGAGGAACAAGTGA+TGG + tig0029200:16187-16206 Msa0880070:intergenic 45.0%
GAGAAGTCTTGAGAATCAGG+AGG + tig0029200:16199-16218 Msa0880070:intergenic 45.0%
GTGGAAGGATTAGGAGGATA+GGG + tig0029200:16280-16299 Msa1441050:intergenic 45.0%
GAAGAAGAGAAATGAGGAGG+AGG + tig0029200:16313-16332 Msa1441050:intergenic 45.0%
GAGGAAGAAGAGAAATGAGG+AGG + tig0029200:16316-16335 Msa1441050:intergenic 45.0%
TTGAAGAAGAACGTGGTGGT+GGG + tig0029200:16730-16749 Msa1441050:intergenic 45.0%
TTTGAAGAAGAACGTGGTGG+TGG + tig0029200:16731-16750 Msa1441050:intergenic 45.0%
! CTCTTTGAAGAAGAACGTGG+TGG + tig0029200:16734-16753 Msa1441050:intergenic 45.0%
CATAGGTCGAGTTTGGACTT+CGG + tig0029200:17566-17585 Msa1441050:intergenic 45.0%
CATCCAATGTCGTTATCAGG+AGG - tig0029200:17812-17831 Msa1441050:intron 45.0%
! GATCCTCCTGATAACGACAT+TGG + tig0029200:17818-17837 Msa1441050:intergenic 45.0%
TCAGTCTGAGGAAACATCGT+AGG + tig0029200:17845-17864 Msa1441050:intergenic 45.0%
GAAGCTAAATTTGTCGCCGA+GGG + tig0029200:18010-18029 Msa1441050:intergenic 45.0%
TGAAGCTAAATTTGTCGCCG+AGG + tig0029200:18011-18030 Msa1441050:intergenic 45.0%
TCAGTTGTGGCATGTTGTTG+TGG + tig0029200:18169-18188 Msa1441050:intergenic 45.0%
!! GAACAAGTGATGGGTGTGTT+TGG + tig0029200:16177-16196 Msa1441050:intergenic 45.0%
GAATCAGGAGGAACAAGTGA+TGG + tig0029200:16187-16206 Msa1441050:intergenic 45.0%
GAGAAGTCTTGAGAATCAGG+AGG + tig0029200:16199-16218 Msa1441050:intergenic 45.0%
GTGGAAGGATTAGGAGGATA+GGG + tig0029200:16280-16299 Msa1441050:intergenic 45.0%
GAAGAAGAGAAATGAGGAGG+AGG + tig0029200:16313-16332 Msa1441050:intergenic 45.0%
GAGGAAGAAGAGAAATGAGG+AGG + tig0029200:16316-16335 Msa1441050:intergenic 45.0%
TTGAAGAAGAACGTGGTGGT+GGG + tig0029200:16730-16749 Msa1441050:intergenic 45.0%
TTTGAAGAAGAACGTGGTGG+TGG + tig0029200:16731-16750 Msa1441050:intergenic 45.0%
! CTCTTTGAAGAAGAACGTGG+TGG + tig0029200:16734-16753 Msa1441050:intergenic 45.0%
CATAGGTCGAGTTTGGACTT+CGG + tig0029200:17566-17585 Msa1441050:intergenic 45.0%
CATCCAATGTCGTTATCAGG+AGG - tig0029200:17812-17831 Msa1441050:intron 45.0%
! GATCCTCCTGATAACGACAT+TGG + tig0029200:17818-17837 Msa1441050:intergenic 45.0%
TCAGTCTGAGGAAACATCGT+AGG + tig0029200:17845-17864 Msa1441050:intergenic 45.0%
GAAGCTAAATTTGTCGCCGA+GGG + tig0029200:18010-18029 Msa1441050:intergenic 45.0%
TGAAGCTAAATTTGTCGCCG+AGG + tig0029200:18011-18030 Msa1441050:intergenic 45.0%
TCAGTTGTGGCATGTTGTTG+TGG + tig0029200:18169-18188 Msa1441050:intergenic 45.0%
GGTGGAAGGATTAGGAGGAT+AGG + tig0029200:16281-16300 Msa1441050:intergenic 50.0%
!! GAGATGGTGGAAGGATTAGG+AGG + tig0029200:16286-16305 Msa1441050:intergenic 50.0%
ATGAGGAGGAGGGTAAGAGA+TGG + tig0029200:16302-16321 Msa1441050:intergenic 50.0%
CTCTTCTTCCTCTTCTGCTC+AGG - tig0029200:16324-16343 Msa1441050:three_prime_UTR 50.0%
GCAGAAACAAGCTCGTGAGT+TGG + tig0029200:16476-16495 Msa1441050:intergenic 50.0%
! TGAAGAAGAACGTGGTGGTG+GGG + tig0029200:16729-16748 Msa1441050:intergenic 50.0%
TGTCGTTATCAGGAGGATCG+CGG - tig0029200:17819-17838 Msa1441050:intron 50.0%
GGTGGAAGGATTAGGAGGAT+AGG + tig0029200:16281-16300 Msa1441050:intergenic 50.0%
!! GAGATGGTGGAAGGATTAGG+AGG + tig0029200:16286-16305 Msa1441050:intergenic 50.0%
ATGAGGAGGAGGGTAAGAGA+TGG + tig0029200:16302-16321 Msa1441050:intergenic 50.0%
CTCTTCTTCCTCTTCTGCTC+AGG - tig0029200:16324-16343 Msa1441050:three_prime_UTR 50.0%
GCAGAAACAAGCTCGTGAGT+TGG + tig0029200:16476-16495 Msa1441050:intergenic 50.0%
! TGAAGAAGAACGTGGTGGTG+GGG + tig0029200:16729-16748 Msa1441050:intergenic 50.0%
TGTCGTTATCAGGAGGATCG+CGG - tig0029200:17819-17838 Msa1441050:intron 50.0%
!! GGAGGGTAAGAGATGGTGGA+AGG + tig0029200:16295-16314 Msa1441050:intergenic 55.0%
AGGAGGAGGGTAAGAGATGG+TGG + tig0029200:16299-16318 Msa1441050:intergenic 55.0%
!! GGAGGGTAAGAGATGGTGGA+AGG + tig0029200:16295-16314 Msa1441050:intergenic 55.0%
AGGAGGAGGGTAAGAGATGG+TGG + tig0029200:16299-16318 Msa1441050:intergenic 55.0%
GGTGGGGCAGCCTTTGATGA+TGG + tig0029200:16713-16732 Msa1441050:intergenic 60.0%
GGTGGGGCAGCCTTTGATGA+TGG + tig0029200:16713-16732 Msa1441050:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0029200 gene 16145 18474 16145 ID=Msa1441050;Name=Msa1441050
tig0029200 mRNA 16145 18474 16145 ID=Msa1441050-mRNA-1;Parent=Msa1441050;Name=Msa1441050-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.8|0.66|1|1|1|6|236|267
tig0029200 exon 16145 16464 16145 ID=Msa1441050-mRNA-1:exon:12611;Parent=Msa1441050-mRNA-1
tig0029200 exon 16553 16837 16553 ID=Msa1441050-mRNA-1:exon:12610;Parent=Msa1441050-mRNA-1
tig0029200 exon 17472 17537 17472 ID=Msa1441050-mRNA-1:exon:12609;Parent=Msa1441050-mRNA-1
tig0029200 exon 17674 17739 17674 ID=Msa1441050-mRNA-1:exon:12608;Parent=Msa1441050-mRNA-1
tig0029200 exon 17829 17930 17829 ID=Msa1441050-mRNA-1:exon:12607;Parent=Msa1441050-mRNA-1
tig0029200 exon 18274 18474 18274 ID=Msa1441050-mRNA-1:exon:12606;Parent=Msa1441050-mRNA-1
tig0029200 CDS 18274 18474 18274 ID=Msa1441050-mRNA-1:cds;Parent=Msa1441050-mRNA-1
tig0029200 CDS 17829 17930 17829 ID=Msa1441050-mRNA-1:cds;Parent=Msa1441050-mRNA-1
tig0029200 CDS 17674 17739 17674 ID=Msa1441050-mRNA-1:cds;Parent=Msa1441050-mRNA-1
tig0029200 CDS 17472 17537 17472 ID=Msa1441050-mRNA-1:cds;Parent=Msa1441050-mRNA-1
tig0029200 CDS 16553 16837 16553 ID=Msa1441050-mRNA-1:cds;Parent=Msa1441050-mRNA-1
tig0029200 CDS 16381 16464 16381 ID=Msa1441050-mRNA-1:cds;Parent=Msa1441050-mRNA-1
tig0029200 three_prime_UTR 16145 16380 16145 ID=Msa1441050-mRNA-1:three_prime_utr;Parent=Msa1441050-mRNA-1
Gene Sequence

>Msa1441050

ATGGCTGGTTCTTCTGATGATGATATACACCAAACACACCCATCACTTGTTCCTCCTGATTCTCAAGACTTCTCCAATTTATTCAACCAACTCATGGATCCATCTTCTTCATCATCTTTCAATTTTTCTGATCCCTATCCTCCTAATCCTTCCACCATCTCTTACCCTCCTCCTCATTTCTCTTCTTCCTCTTCTGCTCAGAATGATGAAGGTTCAGAGTTGCCATCATCAAAGGCTGCCCCACCACCACGTTCTTCTTCAAAGAGAAGCAGAGCTGCAGAGTTCCATAATTTGTCTGAAAAGAGAAGGAGGAGTAAGATTAATGAGAAATTGAAAGCTTTACAAAATTTAATTCCAAATTCTAACAAGACAGATAAAGCTTCAATGTTAGATGAGGCCATTGAATATTTAAAGCAGCTTCAGCTTCAAGTGCAAATGTTAATGGTGAGAAATGGTTATAGCTTGCATCCAATGTCGTTATCAGGAGGATCGCGGCCTACGATGTTTCCTCAGACTGAGTTGTTCAATCTTGATGAGGGTAATAGTGGATTTCACAATTCTAACAATGCAATTACCCCGCCTGCTAACAATGAATATTTCGCACGGCAAGCTTTTAGTTTTCCAGAACAATGCAGCATGTCAAATCAATCTGTAATCATACCCTCGGCGACAAATTTAGCTTCATTTGATACCTCATCAAGTTTTCAAACCTCTATTAAGGATGTTTTCAGCCACAACAACATGCCACAACTGATTATGGATACAACAAGGATTGGAAAAACTCCTTCTTCTGATGTGTCATAA
Protein sequence

>Msa1441050

MAGSSDDDIHQTHPSLVPPDSQDFSNLFNQLMDPSSSSSFNFSDPYPPNPSTISYPPPHFSSSSSAQNDEGSELPSSKAAPPPRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMVRNGYSLHPMSLSGGSRPTMFPQTELFNLDEGNSGFHNSNNAITPPANNEYFARQAFSFPEQCSMSNQSVIIPSATNLASFDTSSSFQTSIKDVFSHNNMPQLIMDTTRIGKTPSSDVS*