AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0052160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0052160 MtrunA17_Chr1g0152841 97.474 475 7 2 1 475 1 470 0.0 955
Msa0052160 MtrunA17_Chr1g0207581 71.992 482 115 6 1 475 1 469 0.0 702
Msa0052160 MtrunA17_Chr3g0134521 71.429 448 85 4 1 444 1 409 0.0 617
Msa0052160 MtrunA17_Chr2g0309941 55.405 370 152 5 65 425 15 380 3.32e-146 423
Msa0052160 MtrunA17_Chr3g0112781 44.131 426 197 5 49 461 22 419 2.70e-125 372
Msa0052160 MtrunA17_Chr1g0176101 48.066 362 167 5 67 425 4 347 4.99e-113 337
Msa0052160 MtrunA17_Chr5g0436191 43.112 392 197 7 92 469 40 419 1.32e-108 328
Msa0052160 MtrunA17_Chr1g0154851 45.272 349 175 7 82 426 30 366 1.22e-102 311
Msa0052160 MtrunA17_Chr5g0403841 44.745 333 174 4 93 425 53 375 5.02e-98 300
Msa0052160 MtrunA17_Chr3g0141481 42.473 372 201 5 62 424 6 373 2.80e-97 298
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0052160 AT3G19540.1 66.531 493 139 7 1 475 1 485 0.0 633
Msa0052160 AT1G49840.1 62.008 508 146 9 1 475 1 494 0.0 600
Msa0052160 AT1G27690.1 65.410 451 124 9 1 444 1 426 0.0 572
Msa0052160 AT1G79420.1 50.777 386 165 8 63 425 16 399 2.73e-132 389
Msa0052160 AT5G05840.1 53.560 323 137 4 116 426 66 387 2.00e-123 367
Msa0052160 AT5G06610.1 47.721 373 165 9 64 427 1 352 1.57e-110 332
Msa0052160 AT5G66740.1 45.559 349 177 5 82 427 30 368 1.94e-101 308
Msa0052160 AT3G55720.1 43.646 362 182 7 84 425 31 390 3.20e-96 297
Msa0052160 AT1G75160.1 45.833 312 153 6 123 425 87 391 1.93e-92 286

Find 169 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTACTACTTCGTCTTTA+AGG 0.085357 1_2:-6349667 None:intergenic
AATTGTTGTAGCTTTATTTA+AGG 0.136676 1_2:+6352567 Msa0052160:three_prime_UTR
GAGATTGCTTCTTGGTGTTT+TGG 0.193845 1_2:+6349997 Msa0052160:CDS
ATGGAGGCGATGCAGTTTAT+TGG 0.240082 1_2:+6352152 Msa0052160:CDS
GTTGTTGTTGTTAGTTTGTT+TGG 0.253761 1_2:-6349483 None:intergenic
GCCTCTTCGACGCGCGCTTC+AGG 0.284085 1_2:+6351606 Msa0052160:CDS
GCAATACGAATAACATTAAC+TGG 0.307266 1_2:+6352503 Msa0052160:CDS
GTAACAGAGGTGAAGGAAAA+TGG 0.320652 1_2:+6349885 Msa0052160:CDS
TGGTTTCAAGGCACTAATAT+TGG 0.321801 1_2:+6352931 Msa0052160:three_prime_UTR
TCTGATCTGAGATTGCTTCT+TGG 0.323802 1_2:+6349989 Msa0052160:CDS
TCCACCAGACTCTGCAGCTT+TGG 0.331778 1_2:-6351440 None:intergenic
TAAATAAAGCTACAACAATT+AGG 0.332430 1_2:-6352564 None:intergenic
TGTTGTGTTGAAACGGAAAT+TGG 0.334303 1_2:-6349547 None:intergenic
GGTTTGGTGATGGTAATTTC+AGG 0.334470 1_2:+6352952 Msa0052160:three_prime_UTR
CAGCAATACATTGCCTCTTC+GGG 0.342499 1_2:+6351307 Msa0052160:CDS
ATTGTTGTAGCTTTATTTAA+GGG 0.345216 1_2:+6352568 Msa0052160:three_prime_UTR
GCAGCAATACATTGCCTCTT+CGG 0.348152 1_2:+6351306 Msa0052160:CDS
CTGCAGCTTTGGAGGAATTC+CGG 0.351722 1_2:-6351429 None:intergenic
TGTTCTGAATGCGGGTCAAA+TGG 0.358520 1_2:-6352129 None:intergenic
AACAGGACTTCTTGTCCATT+TGG 0.358795 1_2:+6352099 Msa0052160:CDS
ACAGTGGCAAAGTTGTAAAA+TGG 0.359953 1_2:+6349619 Msa0052160:exon
TGGAGGCGATGCAGTTTATT+GGG 0.360194 1_2:+6352153 Msa0052160:CDS
TCTTACTACTTCGTCTTTAA+GGG 0.360832 1_2:-6349666 None:intergenic
AGCTTTATTTAAGGGCCATT+TGG 0.361123 1_2:+6352576 Msa0052160:three_prime_UTR
CTCTGCTGGACCTTCGCTCC+TGG 0.365481 1_2:-6352038 None:intergenic
AACATGCTAGCAGTAGTTCT+TGG 0.366168 1_2:-6351926 None:intergenic
CGTCCATGCTTCTTCCATCC+TGG 0.367626 1_2:-6352299 None:intergenic
TCCTACTTACTCTGGCTACT+TGG 0.372013 1_2:-6353052 None:intergenic
TTGTTGTTGTTAGTTTGTTT+GGG 0.385072 1_2:-6349482 None:intergenic
GATTCCCAATTTCACACTAT+AGG 0.398978 1_2:-6352776 None:intergenic
TCCTCCAAAGCTGCAGAGTC+TGG 0.404172 1_2:+6351436 Msa0052160:CDS
GTGAAGGAAAATGGGGTCAT+TGG 0.407465 1_2:+6349894 Msa0052160:CDS
CTTTGGAGGAATTCCGGCTA+CGG 0.421308 1_2:-6351423 None:intergenic
TCAAGGCACTAATATTGGTT+TGG 0.421768 1_2:+6352936 Msa0052160:three_prime_UTR
TGCGGCTACTGTTGCATACC+AGG 0.425323 1_2:+6352447 Msa0052160:CDS
TTATCAATGCAAGATGCATT+GGG 0.427914 1_2:+6351948 Msa0052160:CDS
ATTCATTTCTTGACGACTAC+AGG 0.428100 1_2:+6352188 Msa0052160:CDS
TGTCTTGTGGCAGATGAATC+CGG 0.434759 1_2:+6351465 Msa0052160:CDS
ACCAGACTCTGCAGCTTTGG+AGG 0.442826 1_2:-6351437 None:intergenic
CTTGGTGCACATGCTGCAAA+AGG 0.443126 1_2:+6351574 Msa0052160:CDS
TGGAGGAATGAAACAGTCTA+TGG 0.445554 1_2:-6352356 None:intergenic
AAGGTCCAGCAGAGATCATA+AGG 0.446893 1_2:+6352047 Msa0052160:CDS
TTTATCAATGCAAGATGCAT+TGG 0.453729 1_2:+6351947 Msa0052160:CDS
TAACAGAGGTGAAGGAAAAT+GGG 0.455369 1_2:+6349886 Msa0052160:CDS
CTTAAAGACGAAGTAGTAAG+AGG 0.465018 1_2:+6349668 Msa0052160:CDS
AGGGATTATGATTGCTCACT+CGG 0.466646 1_2:+6352219 Msa0052160:CDS
GACGACTACAGGCCTGTTGA+AGG 0.466767 1_2:+6352199 Msa0052160:CDS
GCCACTGTGAAGAGAGAGAA+AGG 0.468810 1_2:-6349604 None:intergenic
ACGTGCCTTATGATCTCTGC+TGG 0.469337 1_2:-6352052 None:intergenic
GAGTTGTTTATGACGAGATC+GGG 0.469641 1_2:+6349791 Msa0052160:CDS
AGAAGAACTCGAAGAAGAAA+CGG 0.472026 1_2:-6349945 None:intergenic
ACAAATTACTGCAGGTAAAA+CGG 0.472385 1_2:+6352610 Msa0052160:three_prime_UTR
GGATACTTTAGTCAGAAAAC+AGG 0.478492 1_2:+6352082 Msa0052160:CDS
TCAGTAGTACAAACATGAAC+AGG 0.483324 1_2:-6350034 None:intergenic
TTAAGGGCCATTTGGTTCAC+GGG 0.483782 1_2:+6352584 Msa0052160:three_prime_UTR
AAAGTTCATGCTGGTTGCAA+TGG 0.484470 1_2:+6351523 Msa0052160:CDS
AAAATGATTTCTATTACTCT+AGG 0.486131 1_2:+6352701 Msa0052160:three_prime_UTR
TTGATGCTGAGATGAGGAAA+AGG 0.486272 1_2:-6350058 None:intergenic
TTTAAGGGCCATTTGGTTCA+CGG 0.487658 1_2:+6352583 Msa0052160:three_prime_UTR
TGGTATGTGGAGCTTGCTCT+TGG 0.487663 1_2:+6351493 Msa0052160:CDS
AAAACGGTAAAGATTGCAGC+AGG 0.491939 1_2:+6352626 Msa0052160:three_prime_UTR
GCTTTATCACCGTTGAAAGA+AGG 0.492252 1_2:+6349833 Msa0052160:CDS
GCAATCATAATCCCTTCAAC+AGG 0.492671 1_2:-6352211 None:intergenic
GCCTCCATTGTTCTGAATGC+GGG 0.493956 1_2:-6352137 None:intergenic
TAGTCCACAGTTAACCTGTC+TGG 0.497605 1_2:+6349442 Msa0052160:five_prime_UTR
GAAATGTATTGCCGCCAGAC+AGG 0.497936 1_2:-6349456 None:intergenic
ATTAACAATGCTTATGCCAT+GGG 0.499132 1_2:+6351352 Msa0052160:CDS
AATTAACAATGCTTATGCCA+TGG 0.501037 1_2:+6351351 Msa0052160:CDS
AGCTCCACATACCACATATC+CGG 0.501178 1_2:-6351484 None:intergenic
TATGTGGAGCTTGCTCTTGG+TGG 0.503264 1_2:+6351496 Msa0052160:CDS
AGAAGTGCTTCTCCTATGTC+AGG 0.505134 1_2:+6349728 Msa0052160:CDS
GAAGCAAATCGTAGCTCTGA+TGG 0.505604 1_2:-6352376 None:intergenic
TCTTCACCGTCGGTTCCATC+AGG 0.505819 1_2:-6349857 None:intergenic
ATTAGGCTAATTCAGAAACT+TGG 0.507896 1_2:-6352547 None:intergenic
AAGTTCATGCTGGTTGCAAT+GGG 0.508862 1_2:+6351524 Msa0052160:CDS
GGAACTGCGCAACTTTGGCC+TGG 0.509019 1_2:-6352465 None:intergenic
TCAAATGGGAATCTTCCAAA+TGG 0.509295 1_2:-6352114 None:intergenic
TTTGGAGGAATTCCGGCTAC+GGG 0.510925 1_2:-6351422 None:intergenic
CACTAATATTGGTTTGGTGA+TGG 0.515225 1_2:+6352942 Msa0052160:three_prime_UTR
GAGGTTGCGTTCAATGTCCC+TGG 0.515312 1_2:+6352328 Msa0052160:CDS
GTTCTGAATGCGGGTCAAAT+GGG 0.515684 1_2:-6352128 None:intergenic
TGGCGCCACACACCTTGGCT+TGG 0.515830 1_2:+6351556 Msa0052160:CDS
ATCCGTCGACATTAAAAGCC+AGG 0.517562 1_2:+6352020 Msa0052160:CDS
CGCCTCCATTGTTCTGAATG+CGG 0.518551 1_2:-6352138 None:intergenic
AATTTAGCTCCTACTTACTC+TGG 0.519632 1_2:-6353060 None:intergenic
AAACAGTCTATGGAAAGGCC+AGG 0.521856 1_2:-6352346 None:intergenic
GGAGTTGTTTATGACGAGAT+CGG 0.522536 1_2:+6349790 Msa0052160:CDS
CCATCAGGACCTTCTTTCAA+CGG 0.524176 1_2:-6349842 None:intergenic
AAAATGGGGTCATTGGATGA+AGG 0.524835 1_2:+6349901 Msa0052160:CDS
GAGGTCACGTGCAAAATCTC+CGG 0.526889 1_2:+6349703 Msa0052160:CDS
CTGAGCTTCCTCATGGTCAG+AGG 0.527585 1_2:+6352413 Msa0052160:CDS
TTGTCATCCCGTGAACCAAA+TGG 0.529126 1_2:-6352591 None:intergenic
TTGCTGTTGTTGTGTTGAAA+CGG 0.532958 1_2:-6349554 None:intergenic
ACAACTCCGGCGGAATACCT+TGG 0.535390 1_2:-6349775 None:intergenic
TGTCAGGACTTCTCCGTCGC+CGG 0.539180 1_2:+6349744 Msa0052160:CDS
CAATACATTGCCTCTTCGGG+TGG 0.539607 1_2:+6351310 Msa0052160:CDS
AACGGTGATAAAGCTTCTAC+CGG 0.541189 1_2:-6349824 None:intergenic
TGTAAAATGGAGCGAAAACA+AGG 0.541632 1_2:+6349632 Msa0052160:exon
GCGCGTCGAAGAGGCCTCAC+CGG 0.547654 1_2:-6351598 None:intergenic
ACGACTACAGGCCTGTTGAA+GGG 0.551805 1_2:+6352200 Msa0052160:CDS
CTAGTGATCTTGAAACATCA+TGG 0.556936 1_2:-6352867 None:intergenic
GGAAGAAGCATGGACGATTG+AGG 0.557617 1_2:+6352306 Msa0052160:CDS
GATGTTGGTAACAGAGGTGA+AGG 0.558467 1_2:+6349878 Msa0052160:CDS
TCCAAAGCTGCAGAGTCTGG+TGG 0.559419 1_2:+6351439 Msa0052160:CDS
ACCTGAAGCGCGCGTCGAAG+AGG 0.560247 1_2:-6351607 None:intergenic
AGTCTGGTGGATTTGTCTTG+TGG 0.566455 1_2:+6351452 Msa0052160:CDS
GTGGACGATTATGTACATCA+AGG 0.571251 1_2:+6352730 Msa0052160:three_prime_UTR
AATCTTCAAACCACCCGAAG+AGG 0.574587 1_2:-6351320 None:intergenic
GCAGCATGTGCACCAAGCCA+AGG 0.575022 1_2:-6351568 None:intergenic
CTAACAAAGTCACCCGTAGC+CGG 0.577034 1_2:+6351410 Msa0052160:CDS
ACATTAAAAGCCAGGAGCGA+AGG 0.577670 1_2:+6352028 Msa0052160:CDS
GTTGCAATGGGAAGCTCGTG+TGG 0.578665 1_2:+6351536 Msa0052160:CDS
CCGTTGAAAGAAGGTCCTGA+TGG 0.579878 1_2:+6349842 Msa0052160:CDS
CCCTTTCTCTCTCTTCACAG+TGG 0.580573 1_2:+6349603 Msa0052160:five_prime_UTR
CAATGCTTATGCCATGGGAA+AGG 0.581877 1_2:+6351357 Msa0052160:CDS
GGAGAAGAAGATAAATGAAG+AGG 0.582179 1_2:+6351970 Msa0052160:CDS
ACGGATCTGCACAAAGCTTG+AGG 0.586516 1_2:-6352003 None:intergenic
GGTGGTAGTAAAGTTCATGC+TGG 0.588736 1_2:+6351514 Msa0052160:CDS
TGCACATGCTGCAAAAGGGC+CGG 0.591594 1_2:+6351579 Msa0052160:CDS
TTGACCCGCATTCAGAACAA+TGG 0.592514 1_2:+6352133 Msa0052160:CDS
ATGCTGCAAAAGGGCCGGTG+AGG 0.593168 1_2:+6351584 Msa0052160:CDS
GAAGCTTCTGAGCTTCCTCA+TGG 0.594259 1_2:+6352406 Msa0052160:CDS
GGGATTATGATTGCTCACTC+GGG 0.594647 1_2:+6352220 Msa0052160:CDS
GTTACCAACATCTTCACCGT+CGG 0.597204 1_2:-6349867 None:intergenic
CCACTGTGAAGAGAGAGAAA+GGG 0.600459 1_2:-6349603 None:intergenic
ATAGGAGAAGCACTTCTCGC+CGG 0.601989 1_2:-6349722 None:intergenic
CAAACATGAACAGGTGCAAG+AGG 0.602523 1_2:-6350025 None:intergenic
CGACGGAGAAGTCCTGACAT+AGG 0.603265 1_2:-6349740 None:intergenic
ACGGGATGACAAATTACTGC+AGG 0.605013 1_2:+6352602 Msa0052160:three_prime_UTR
TCGTGTGGCGCCACACACCT+TGG 0.605281 1_2:+6351551 Msa0052160:CDS
TGAGCTTCCTCATGGTCAGA+GGG 0.606171 1_2:+6352414 Msa0052160:CDS
TTGGTGCACATGCTGCAAAA+GGG 0.607369 1_2:+6351575 Msa0052160:CDS
GAGCCATACTAAAACCAGGA+TGG 0.613270 1_2:+6352285 Msa0052160:CDS
TTTGTTAGCAGTCTCAAACT+CGG 0.615182 1_2:-6351395 None:intergenic
ACCAAGTAGCCAGAGTAAGT+AGG 0.615354 1_2:+6353051 Msa0052160:three_prime_UTR
AAACCAGGATGGAAGAAGCA+TGG 0.615435 1_2:+6352296 Msa0052160:CDS
AAATGGGGTCATTGGATGAA+GGG 0.616766 1_2:+6349902 Msa0052160:CDS
GTGCACCAAGCCAAGGTGTG+TGG 0.620387 1_2:-6351561 None:intergenic
CTCTTTACCCTCTGACCATG+AGG 0.622184 1_2:-6352421 None:intergenic
TATCATCCTCACCTTTCCCA+TGG 0.623660 1_2:-6351368 None:intergenic
GAAGGTCCTGATGGAACCGA+CGG 0.626057 1_2:+6349851 Msa0052160:CDS
ACCCGCATTCAGAACAATGG+AGG 0.627450 1_2:+6352136 Msa0052160:CDS
AACAGTCTATGGAAAGGCCA+GGG 0.628998 1_2:-6352345 None:intergenic
GGCAGATGAATCCGGATATG+TGG 0.630821 1_2:+6351473 Msa0052160:CDS
CAATGAGCCATACTAAAACC+AGG 0.631927 1_2:+6352281 Msa0052160:CDS
GAATGAAACAGTCTATGGAA+AGG 0.638202 1_2:-6352351 None:intergenic
GAATCCGGATATGTGGTATG+TGG 0.641508 1_2:+6351480 Msa0052160:CDS
TCACACTATAGGAAAAGATG+TGG 0.643030 1_2:-6352765 None:intergenic
GGTGAAGATGTTGGTAACAG+AGG 0.650817 1_2:+6349872 Msa0052160:CDS
TATCAATGCAAGATGCATTG+GGG 0.653185 1_2:+6351949 Msa0052160:CDS
GTCAAGAAATGAATTTATCG+TGG 0.654911 1_2:-6352179 None:intergenic
AGTAGTAAGAGGACTTTCAC+CGG 0.655141 1_2:+6349679 Msa0052160:CDS
GAGATCGGGAAGTTTAAGAC+CGG 0.655639 1_2:+6349805 Msa0052160:CDS
AGAAGCATGGACGATTGAGG+AGG 0.662743 1_2:+6352309 Msa0052160:CDS
GATCTCGTCATAAACAACTC+CGG 0.670627 1_2:-6349788 None:intergenic
ATGTCTTTGATGCTGAGATG+AGG 0.670912 1_2:-6350064 None:intergenic
AACAGAGGTGAAGGAAAATG+GGG 0.671749 1_2:+6349887 Msa0052160:CDS
TCCACAGTTAACCTGTCTGG+CGG 0.672871 1_2:+6349445 Msa0052160:five_prime_UTR
TAAGAGGACTTTCACCGGCG+AGG 0.673982 1_2:+6349684 Msa0052160:CDS
GAACTCGAAGAAGAAACGGA+AGG 0.676634 1_2:-6349941 None:intergenic
GAATAACATTAACTGGACAG+TGG 0.679369 1_2:+6352510 Msa0052160:CDS
GCAAATCGTAGCTCTGATGG+AGG 0.679907 1_2:-6352373 None:intergenic
GGAACCGACGGTGAAGATGT+TGG 0.691934 1_2:+6349863 Msa0052160:CDS
GTTAGCAGTCTCAAACTCGG+AGG 0.710125 1_2:-6351392 None:intergenic
GCCGCCAGACAGGTTAACTG+TGG 0.712330 1_2:-6349446 None:intergenic
CTCGTCATAAACAACTCCGG+CGG 0.713466 1_2:-6349785 None:intergenic
AAACGGTAAAGATTGCAGCA+GGG 0.753590 1_2:+6352627 Msa0052160:three_prime_UTR
TCAGAGGGTAAAGAGCGCTG+CGG 0.765849 1_2:+6352429 Msa0052160:CDS
CTTATGCCATGGGAAAGGTG+AGG 0.780728 1_2:+6351362 Msa0052160:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAATTAATTTTAACATGTTT+GGG - chr1_2:6350895-6350914 None:intergenic 15.0%
!!! ACAATTAATTTTAACATGTT+TGG - chr1_2:6350896-6350915 None:intergenic 15.0%
!! GTTATGTTTGAAAATCTAAT+AGG + chr1_2:6350450-6350469 Msa0052160:intron 20.0%
!! AGAACAAAAAAAACAGAAAA+AGG - chr1_2:6350517-6350536 None:intergenic 20.0%
!! AAACTAACTTATGAATGATA+AGG - chr1_2:6351719-6351738 None:intergenic 20.0%
!!! ATTTCTGTTATAGTTTGTTA+AGG + chr1_2:6351740-6351759 Msa0052160:intron 20.0%
!!! TTTCTGTTATAGTTTGTTAA+GGG + chr1_2:6351741-6351760 Msa0052160:intron 20.0%
!! TAAATAAAGCTACAACAATT+AGG - chr1_2:6352567-6352586 None:intergenic 20.0%
!!! AATTGTTGTAGCTTTATTTA+AGG + chr1_2:6352567-6352586 Msa0052160:three_prime_UTR 20.0%
!!! ATTGTTGTAGCTTTATTTAA+GGG + chr1_2:6352568-6352587 Msa0052160:three_prime_UTR 20.0%
!! AAAATGATTTCTATTACTCT+AGG + chr1_2:6352701-6352720 Msa0052160:three_prime_UTR 20.0%
!!! TTGTTGTTGTTAGTTTGTTT+GGG - chr1_2:6349485-6349504 None:intergenic 25.0%
! GAGATAGAAAAACTAACAAT+GGG - chr1_2:6350091-6350110 None:intergenic 25.0%
! AGAGATAGAAAAACTAACAA+TGG - chr1_2:6350092-6350111 None:intergenic 25.0%
! GAAAATCTAATAGGCTAATT+AGG + chr1_2:6350459-6350478 Msa0052160:intron 25.0%
!!! TTTTTGTTCTGTGTTTTGAT+TGG + chr1_2:6350527-6350546 Msa0052160:intron 25.0%
! GATGTGATTTATGTTTAGAA+AGG + chr1_2:6350746-6350765 Msa0052160:intron 25.0%
! TTGTATTCGTGTTTAATACA+TGG + chr1_2:6350912-6350931 Msa0052160:intron 25.0%
!!! AGTTACTTTTGATGCTATAA+TGG + chr1_2:6351185-6351204 Msa0052160:intron 25.0%
!! AGAGGCATATATGTTAATTT+AGG - chr1_2:6351657-6351676 None:intergenic 25.0%
! ACTACTTATCTAATAACAAG+AGG - chr1_2:6351675-6351694 None:intergenic 25.0%
! TTATGAATGATAAGGAGAAA+AGG - chr1_2:6351711-6351730 None:intergenic 25.0%
!!! TATAGTTTGTTAAGGGATAT+TGG + chr1_2:6351748-6351767 Msa0052160:intron 25.0%
!!! ATAGTTTGTTAAGGGATATT+GGG + chr1_2:6351749-6351768 Msa0052160:intron 25.0%
! CAAGTCTAAATTGATAAACA+TGG - chr1_2:6351863-6351882 None:intergenic 25.0%
!!! TTAGACTTGTTTCTATGTAT+AGG + chr1_2:6351895-6351914 Msa0052160:intron 25.0%
!!! TAGACTTGTTTCTATGTATA+GGG + chr1_2:6351896-6351915 Msa0052160:intron 25.0%
!! TTTCTATTACTCTAGGTTTT+TGG + chr1_2:6352708-6352727 Msa0052160:three_prime_UTR 25.0%
!! TTTTCCTATAGTGTGAAATT+GGG + chr1_2:6352772-6352791 Msa0052160:three_prime_UTR 25.0%
!!! TTCAACAGTTTTATCAAAGA+TGG - chr1_2:6352986-6353005 None:intergenic 25.0%
!! GTTGTTGTTGTTAGTTTGTT+TGG - chr1_2:6349486-6349505 None:intergenic 30.0%
TCTTACTACTTCGTCTTTAA+GGG - chr1_2:6349669-6349688 None:intergenic 30.0%
!!! CAATCTCAGATCAGATTTTT+TGG - chr1_2:6349984-6350003 None:intergenic 30.0%
!!! TTTTTTTCCTGTTAATCCTC+CGG + chr1_2:6350123-6350142 Msa0052160:intron 30.0%
! TTGTTTATATTTGAGACCAG+AGG + chr1_2:6350270-6350289 Msa0052160:intron 30.0%
! TGTTTATATTTGAGACCAGA+GGG + chr1_2:6350271-6350290 Msa0052160:intron 30.0%
ATCAATTGATTGAGCTTAAG+TGG - chr1_2:6350391-6350410 None:intergenic 30.0%
CTAATTAGGTGAAACATCAT+AGG + chr1_2:6350473-6350492 Msa0052160:intron 30.0%
!!! GTTTTGACTTTTGAGTAACT+TGG + chr1_2:6350569-6350588 Msa0052160:intron 30.0%
TTGAGTGTGAAAATCATGTT+TGG + chr1_2:6350798-6350817 Msa0052160:intron 30.0%
GTTAATTCTAACTTGAAGCT+AGG - chr1_2:6350840-6350859 None:intergenic 30.0%
CAAGTTAGAATTAACTCTGT+AGG + chr1_2:6350845-6350864 Msa0052160:intron 30.0%
ATGGTCTATTGGATGATATT+CGG + chr1_2:6351105-6351124 Msa0052160:intron 30.0%
! GGTTTCTCTTTTTCTACATT+TGG + chr1_2:6351206-6351225 Msa0052160:intron 30.0%
!! ATATAATTTGCTGTTGTTGC+AGG + chr1_2:6351258-6351277 Msa0052160:intron 30.0%
AATTAACAATGCTTATGCCA+TGG + chr1_2:6351351-6351370 Msa0052160:CDS 30.0%
ATTAACAATGCTTATGCCAT+GGG + chr1_2:6351352-6351371 Msa0052160:CDS 30.0%
TTTATCAATGCAAGATGCAT+TGG + chr1_2:6351947-6351966 Msa0052160:CDS 30.0%
TTATCAATGCAAGATGCATT+GGG + chr1_2:6351948-6351967 Msa0052160:CDS 30.0%
GTCAAGAAATGAATTTATCG+TGG - chr1_2:6352182-6352201 None:intergenic 30.0%
! TATTGCTTTCGTGTGATTTT+TGG - chr1_2:6352489-6352508 None:intergenic 30.0%
GCAATACGAATAACATTAAC+TGG + chr1_2:6352503-6352522 Msa0052160:CDS 30.0%
ATTAGGCTAATTCAGAAACT+TGG - chr1_2:6352550-6352569 None:intergenic 30.0%
ACAAATTACTGCAGGTAAAA+CGG + chr1_2:6352610-6352629 Msa0052160:three_prime_UTR 30.0%
! CTTTTCCTATAGTGTGAAAT+TGG + chr1_2:6352771-6352790 Msa0052160:three_prime_UTR 30.0%
! TTTTCGTTGCTGGAAAATTT+TGG + chr1_2:6352905-6352924 Msa0052160:three_prime_UTR 30.0%
!!! AAATTTTGGCTTTGGTTTCA+AGG + chr1_2:6352919-6352938 Msa0052160:three_prime_UTR 30.0%
TGTTGTGTTGAAACGGAAAT+TGG - chr1_2:6349550-6349569 None:intergenic 35.0%
! TTGCTGTTGTTGTGTTGAAA+CGG - chr1_2:6349557-6349576 None:intergenic 35.0%
ACAGTGGCAAAGTTGTAAAA+TGG + chr1_2:6349619-6349638 Msa0052160:exon 35.0%
TGTAAAATGGAGCGAAAACA+AGG + chr1_2:6349632-6349651 Msa0052160:exon 35.0%
CTCTTACTACTTCGTCTTTA+AGG - chr1_2:6349670-6349689 None:intergenic 35.0%
CTTAAAGACGAAGTAGTAAG+AGG + chr1_2:6349668-6349687 Msa0052160:CDS 35.0%
!!! GAATACCTTGGTTTTTTCTC+CGG - chr1_2:6349766-6349785 None:intergenic 35.0%
TAACAGAGGTGAAGGAAAAT+GGG + chr1_2:6349886-6349905 Msa0052160:CDS 35.0%
AGAAGAACTCGAAGAAGAAA+CGG - chr1_2:6349948-6349967 None:intergenic 35.0%
!!! AGATTGCTTCTTGGTGTTTT+GGG + chr1_2:6349998-6350017 Msa0052160:CDS 35.0%
TCAGTAGTACAAACATGAAC+AGG - chr1_2:6350037-6350056 None:intergenic 35.0%
ATAACAGATTCCCTGATAAC+CGG - chr1_2:6350145-6350164 None:intergenic 35.0%
TCAACACATTAATCGAACTC+AGG + chr1_2:6350321-6350340 Msa0052160:intron 35.0%
ATTAATCGAACTCAGGTTCT+CGG + chr1_2:6350328-6350347 Msa0052160:intron 35.0%
! ATTGGTAGCTAGGAAATTGA+TGG + chr1_2:6350545-6350564 Msa0052160:intron 35.0%
! TTGGTAGCTAGGAAATTGAT+GGG + chr1_2:6350546-6350565 Msa0052160:intron 35.0%
TGCTATACTATGTGTGTGTT+TGG + chr1_2:6350651-6350670 Msa0052160:intron 35.0%
TGAAGCTAGGATTATAGCTT+TGG - chr1_2:6350827-6350846 None:intergenic 35.0%
CGTGTTTAATACATGGTTTG+TGG + chr1_2:6350919-6350938 Msa0052160:intron 35.0%
TTAGATTAATCCAACAACCG+AGG - chr1_2:6350984-6351003 None:intergenic 35.0%
TGGTCTATTGGATGATATTC+GGG + chr1_2:6351106-6351125 Msa0052160:intron 35.0%
AGTAATGCAATGTAGTGTTG+TGG + chr1_2:6351233-6351252 Msa0052160:intron 35.0%
TTTGTTAGCAGTCTCAAACT+CGG - chr1_2:6351398-6351417 None:intergenic 35.0%
TATCAATGCAAGATGCATTG+GGG + chr1_2:6351949-6351968 Msa0052160:CDS 35.0%
GGAGAAGAAGATAAATGAAG+AGG + chr1_2:6351970-6351989 Msa0052160:CDS 35.0%
!! ATCATAAGGCACGTTTTGTT+CGG + chr1_2:6352061-6352080 Msa0052160:CDS 35.0%
GGATACTTTAGTCAGAAAAC+AGG + chr1_2:6352082-6352101 Msa0052160:CDS 35.0%
TCAAATGGGAATCTTCCAAA+TGG - chr1_2:6352117-6352136 None:intergenic 35.0%
ATTCATTTCTTGACGACTAC+AGG + chr1_2:6352188-6352207 Msa0052160:CDS 35.0%
GAATGAAACAGTCTATGGAA+AGG - chr1_2:6352354-6352373 None:intergenic 35.0%
GAATAACATTAACTGGACAG+TGG + chr1_2:6352510-6352529 Msa0052160:CDS 35.0%
!! AGCTTTATTTAAGGGCCATT+TGG + chr1_2:6352576-6352595 Msa0052160:three_prime_UTR 35.0%
!! CTATTACTCTAGGTTTTTGG+TGG + chr1_2:6352711-6352730 Msa0052160:three_prime_UTR 35.0%
TCACACTATAGGAAAAGATG+TGG - chr1_2:6352768-6352787 None:intergenic 35.0%
GATTCCCAATTTCACACTAT+AGG - chr1_2:6352779-6352798 None:intergenic 35.0%
CTAGTGATCTTGAAACATCA+TGG - chr1_2:6352870-6352889 None:intergenic 35.0%
!! TATAACCTAGTTTTCGTTGC+TGG + chr1_2:6352895-6352914 Msa0052160:three_prime_UTR 35.0%
! ATTTTCCAGCAACGAAAACT+AGG - chr1_2:6352903-6352922 None:intergenic 35.0%
!!! TTGCTGGAAAATTTTGGCTT+TGG + chr1_2:6352911-6352930 Msa0052160:three_prime_UTR 35.0%
! TGGTTTCAAGGCACTAATAT+TGG + chr1_2:6352931-6352950 Msa0052160:three_prime_UTR 35.0%
! TCAAGGCACTAATATTGGTT+TGG + chr1_2:6352936-6352955 Msa0052160:three_prime_UTR 35.0%
!! CACTAATATTGGTTTGGTGA+TGG + chr1_2:6352942-6352961 Msa0052160:three_prime_UTR 35.0%
! AATTTAGCTCCTACTTACTC+TGG - chr1_2:6353063-6353082 None:intergenic 35.0%
AGTAGTAAGAGGACTTTCAC+CGG + chr1_2:6349679-6349698 Msa0052160:CDS 40.0%
! AAAAAACCAAGGTATTCCGC+CGG + chr1_2:6349769-6349788 Msa0052160:CDS 40.0%
GATCTCGTCATAAACAACTC+CGG - chr1_2:6349791-6349810 None:intergenic 40.0%
GGAGTTGTTTATGACGAGAT+CGG + chr1_2:6349790-6349809 Msa0052160:CDS 40.0%
GAGTTGTTTATGACGAGATC+GGG + chr1_2:6349791-6349810 Msa0052160:CDS 40.0%
AACGGTGATAAAGCTTCTAC+CGG - chr1_2:6349827-6349846 None:intergenic 40.0%
GCTTTATCACCGTTGAAAGA+AGG + chr1_2:6349833-6349852 Msa0052160:CDS 40.0%
GTAACAGAGGTGAAGGAAAA+TGG + chr1_2:6349885-6349904 Msa0052160:CDS 40.0%
AACAGAGGTGAAGGAAAATG+GGG + chr1_2:6349887-6349906 Msa0052160:CDS 40.0%
AAAATGGGGTCATTGGATGA+AGG + chr1_2:6349901-6349920 Msa0052160:CDS 40.0%
AAATGGGGTCATTGGATGAA+GGG + chr1_2:6349902-6349921 Msa0052160:CDS 40.0%
! TCTGATCTGAGATTGCTTCT+TGG + chr1_2:6349989-6350008 Msa0052160:CDS 40.0%
!!! GAGATTGCTTCTTGGTGTTT+TGG + chr1_2:6349997-6350016 Msa0052160:CDS 40.0%
TTGATGCTGAGATGAGGAAA+AGG - chr1_2:6350061-6350080 None:intergenic 40.0%
ATGTCTTTGATGCTGAGATG+AGG - chr1_2:6350067-6350086 None:intergenic 40.0%
TGTTAATCCTCCGGTTATCA+GGG + chr1_2:6350132-6350151 Msa0052160:intron 40.0%
TCAGGGAATCTGTTATTCTC+TGG + chr1_2:6350149-6350168 Msa0052160:intron 40.0%
CAAACTTTCATAACTCCCTC+TGG - chr1_2:6350289-6350308 None:intergenic 40.0%
TTAATCGAACTCAGGTTCTC+GGG + chr1_2:6350329-6350348 Msa0052160:intron 40.0%
TCTCGAATGATTCGTGCTAA+GGG + chr1_2:6350355-6350374 Msa0052160:intron 40.0%
!!! CTGTGTTTTGATTGGTAGCT+AGG + chr1_2:6350535-6350554 Msa0052160:intron 40.0%
TGGTAGCTAGGAAATTGATG+GGG + chr1_2:6350547-6350566 Msa0052160:intron 40.0%
TTGAGTAACTTGGCAAGACT+AGG + chr1_2:6350579-6350598 Msa0052160:intron 40.0%
! ACTATGTGTGTGTTTGGTTC+TGG + chr1_2:6350657-6350676 Msa0052160:intron 40.0%
TTAATCCAACAACCGAGGTT+TGG - chr1_2:6350979-6350998 None:intergenic 40.0%
AACAGCCAAGATATACACGT+TGG + chr1_2:6351002-6351021 Msa0052160:intron 40.0%
ACAGCCAAGATATACACGTT+GGG + chr1_2:6351003-6351022 Msa0052160:intron 40.0%
CAGTATCTCCAGCCAAATTT+CGG - chr1_2:6351055-6351074 None:intergenic 40.0%
ATACTGCAAAGGATCCAAGT+TGG + chr1_2:6351069-6351088 Msa0052160:intron 40.0%
TACTGCAAAGGATCCAAGTT+GGG + chr1_2:6351070-6351089 Msa0052160:intron 40.0%
TTTGTGCTCTCATGGTCTAT+TGG + chr1_2:6351094-6351113 Msa0052160:intron 40.0%
! AAAGTTCATGCTGGTTGCAA+TGG + chr1_2:6351523-6351542 Msa0052160:CDS 40.0%
! AAGTTCATGCTGGTTGCAAT+GGG + chr1_2:6351524-6351543 Msa0052160:CDS 40.0%
ACATGGTAGCAGTTGTTCTT+GGG - chr1_2:6351846-6351865 None:intergenic 40.0%
AACATGGTAGCAGTTGTTCT+TGG - chr1_2:6351847-6351866 None:intergenic 40.0%
AACATGCTAGCAGTAGTTCT+TGG - chr1_2:6351929-6351948 None:intergenic 40.0%
AACAGGACTTCTTGTCCATT+TGG + chr1_2:6352099-6352118 Msa0052160:CDS 40.0%
GCAATCATAATCCCTTCAAC+AGG - chr1_2:6352214-6352233 None:intergenic 40.0%
AGGGATTATGATTGCTCACT+CGG + chr1_2:6352219-6352238 Msa0052160:CDS 40.0%
! GATCTGTAGTGACACTTTTC+AGG + chr1_2:6352245-6352264 Msa0052160:CDS 40.0%
!!! GTAGTGACACTTTTCAGGTT+TGG + chr1_2:6352250-6352269 Msa0052160:CDS 40.0%
CAATGAGCCATACTAAAACC+AGG + chr1_2:6352281-6352300 Msa0052160:CDS 40.0%
!!! CTTCCATCCTGGTTTTAGTA+TGG - chr1_2:6352291-6352310 None:intergenic 40.0%
TGGAGGAATGAAACAGTCTA+TGG - chr1_2:6352359-6352378 None:intergenic 40.0%
!!! TTTTTGGAACTGCGCAACTT+TGG - chr1_2:6352473-6352492 None:intergenic 40.0%
! TTTAAGGGCCATTTGGTTCA+CGG + chr1_2:6352583-6352602 Msa0052160:three_prime_UTR 40.0%
AAAACGGTAAAGATTGCAGC+AGG + chr1_2:6352626-6352645 Msa0052160:three_prime_UTR 40.0%
AAACGGTAAAGATTGCAGCA+GGG + chr1_2:6352627-6352646 Msa0052160:three_prime_UTR 40.0%
GTGGACGATTATGTACATCA+AGG + chr1_2:6352730-6352749 Msa0052160:three_prime_UTR 40.0%
!! GGTTTGGTGATGGTAATTTC+AGG + chr1_2:6352952-6352971 Msa0052160:three_prime_UTR 40.0%
TAGTCCACAGTTAACCTGTC+TGG + chr1_2:6349442-6349461 Msa0052160:five_prime_UTR 45.0%
CCACTGTGAAGAGAGAGAAA+GGG - chr1_2:6349606-6349625 None:intergenic 45.0%
!! AGAAGTGCTTCTCCTATGTC+AGG + chr1_2:6349728-6349747 Msa0052160:CDS 45.0%
! GAGATCGGGAAGTTTAAGAC+CGG + chr1_2:6349805-6349824 Msa0052160:CDS 45.0%
CCATCAGGACCTTCTTTCAA+CGG - chr1_2:6349845-6349864 None:intergenic 45.0%
GTTACCAACATCTTCACCGT+CGG - chr1_2:6349870-6349889 None:intergenic 45.0%
!! GGTGAAGATGTTGGTAACAG+AGG + chr1_2:6349872-6349891 Msa0052160:CDS 45.0%
!! GATGTTGGTAACAGAGGTGA+AGG + chr1_2:6349878-6349897 Msa0052160:CDS 45.0%
GTGAAGGAAAATGGGGTCAT+TGG + chr1_2:6349894-6349913 Msa0052160:CDS 45.0%
GAACTCGAAGAAGAAACGGA+AGG - chr1_2:6349944-6349963 None:intergenic 45.0%
CAAACATGAACAGGTGCAAG+AGG - chr1_2:6350028-6350047 None:intergenic 45.0%
CTGATAACCGGAGGATTAAC+AGG - chr1_2:6350133-6350152 None:intergenic 45.0%
CTGTTAATCCTCCGGTTATC+AGG + chr1_2:6350131-6350150 Msa0052160:intron 45.0%
GTCTCGAATGATTCGTGCTA+AGG + chr1_2:6350354-6350373 Msa0052160:intron 45.0%
GTATCTTGTCAGCCAAACCT+CGG + chr1_2:6350964-6350983 Msa0052160:intron 45.0%
ACGACCCAACGTGTATATCT+TGG - chr1_2:6351010-6351029 None:intergenic 45.0%
! CAAATTTCGGTATCGGGAGT+TGG - chr1_2:6351042-6351061 None:intergenic 45.0%
CAACTCCCGATACCGAAATT+TGG + chr1_2:6351040-6351059 Msa0052160:intron 45.0%
TCCAGCCAAATTTCGGTATC+GGG - chr1_2:6351048-6351067 None:intergenic 45.0%
CTCCAGCCAAATTTCGGTAT+CGG - chr1_2:6351049-6351068 None:intergenic 45.0%
TTTGGCTGGAGATACTGCAA+AGG + chr1_2:6351058-6351077 Msa0052160:intron 45.0%
! TGAGAGCACAAAACCCAACT+TGG - chr1_2:6351086-6351105 None:intergenic 45.0%
!! AGTTGGGTTTTGTGCTCTCA+TGG + chr1_2:6351086-6351105 Msa0052160:intron 45.0%
TGTGCAGGAGAGATAGAACT+GGG + chr1_2:6351131-6351150 Msa0052160:intron 45.0%
GCAGCAATACATTGCCTCTT+CGG + chr1_2:6351306-6351325 Msa0052160:CDS 45.0%
CAGCAATACATTGCCTCTTC+GGG + chr1_2:6351307-6351326 Msa0052160:CDS 45.0%
AATCTTCAAACCACCCGAAG+AGG - chr1_2:6351323-6351342 None:intergenic 45.0%
CAATGCTTATGCCATGGGAA+AGG + chr1_2:6351357-6351376 Msa0052160:CDS 45.0%
TATCATCCTCACCTTTCCCA+TGG - chr1_2:6351371-6351390 None:intergenic 45.0%
!! AGTCTGGTGGATTTGTCTTG+TGG + chr1_2:6351452-6351471 Msa0052160:CDS 45.0%
TGTCTTGTGGCAGATGAATC+CGG + chr1_2:6351465-6351484 Msa0052160:CDS 45.0%
GAATCCGGATATGTGGTATG+TGG + chr1_2:6351480-6351499 Msa0052160:CDS 45.0%
AGCTCCACATACCACATATC+CGG - chr1_2:6351487-6351506 None:intergenic 45.0%
GGTGGTAGTAAAGTTCATGC+TGG + chr1_2:6351514-6351533 Msa0052160:CDS 45.0%
TTGGTGCACATGCTGCAAAA+GGG + chr1_2:6351575-6351594 Msa0052160:CDS 45.0%
ATCCGTCGACATTAAAAGCC+AGG + chr1_2:6352020-6352039 Msa0052160:CDS 45.0%
!! CTCCTGGCTTTTAATGTCGA+CGG - chr1_2:6352025-6352044 None:intergenic 45.0%
ACATTAAAAGCCAGGAGCGA+AGG + chr1_2:6352028-6352047 Msa0052160:CDS 45.0%
AAGGTCCAGCAGAGATCATA+AGG + chr1_2:6352047-6352066 Msa0052160:CDS 45.0%
! GTTCTGAATGCGGGTCAAAT+GGG - chr1_2:6352131-6352150 None:intergenic 45.0%
! TGTTCTGAATGCGGGTCAAA+TGG - chr1_2:6352132-6352151 None:intergenic 45.0%
TTGACCCGCATTCAGAACAA+TGG + chr1_2:6352133-6352152 Msa0052160:CDS 45.0%
ATGGAGGCGATGCAGTTTAT+TGG + chr1_2:6352152-6352171 Msa0052160:CDS 45.0%
TGGAGGCGATGCAGTTTATT+GGG + chr1_2:6352153-6352172 Msa0052160:CDS 45.0%
GGGATTATGATTGCTCACTC+GGG + chr1_2:6352220-6352239 Msa0052160:CDS 45.0%
GAGCCATACTAAAACCAGGA+TGG + chr1_2:6352285-6352304 Msa0052160:CDS 45.0%
AAACCAGGATGGAAGAAGCA+TGG + chr1_2:6352296-6352315 Msa0052160:CDS 45.0%
AACAGTCTATGGAAAGGCCA+GGG - chr1_2:6352348-6352367 None:intergenic 45.0%
AAACAGTCTATGGAAAGGCC+AGG - chr1_2:6352349-6352368 None:intergenic 45.0%
!! GAAGCAAATCGTAGCTCTGA+TGG - chr1_2:6352379-6352398 None:intergenic 45.0%
! TTAAGGGCCATTTGGTTCAC+GGG + chr1_2:6352584-6352603 Msa0052160:three_prime_UTR 45.0%
TTGTCATCCCGTGAACCAAA+TGG - chr1_2:6352594-6352613 None:intergenic 45.0%
ACGGGATGACAAATTACTGC+AGG + chr1_2:6352602-6352621 Msa0052160:three_prime_UTR 45.0%
ACCAAGTAGCCAGAGTAAGT+AGG + chr1_2:6353051-6353070 Msa0052160:three_prime_UTR 45.0%
TCCTACTTACTCTGGCTACT+TGG - chr1_2:6353055-6353074 None:intergenic 45.0%
TCCACAGTTAACCTGTCTGG+CGG + chr1_2:6349445-6349464 Msa0052160:five_prime_UTR 50.0%
GAAATGTATTGCCGCCAGAC+AGG - chr1_2:6349459-6349478 None:intergenic 50.0%
CCCTTTCTCTCTCTTCACAG+TGG + chr1_2:6349603-6349622 Msa0052160:five_prime_UTR 50.0%
GCCACTGTGAAGAGAGAGAA+AGG - chr1_2:6349607-6349626 None:intergenic 50.0%
GAGGTCACGTGCAAAATCTC+CGG + chr1_2:6349703-6349722 Msa0052160:CDS 50.0%
!! ATAGGAGAAGCACTTCTCGC+CGG - chr1_2:6349725-6349744 None:intergenic 50.0%
!!! CTTGGTTTTTTCTCCGGCGA+CGG - chr1_2:6349760-6349779 None:intergenic 50.0%
CTCGTCATAAACAACTCCGG+CGG - chr1_2:6349788-6349807 None:intergenic 50.0%
CCGTTGAAAGAAGGTCCTGA+TGG + chr1_2:6349842-6349861 Msa0052160:CDS 50.0%
ACAGATTCCCTGATAACCGG+AGG - chr1_2:6350142-6350161 None:intergenic 50.0%
TCCCGATACCGAAATTTGGC+TGG + chr1_2:6351044-6351063 Msa0052160:intron 50.0%
GATGATATTCGGGTGTGTGC+AGG + chr1_2:6351116-6351135 Msa0052160:intron 50.0%
GTGTGCAGGAGAGATAGAAC+TGG + chr1_2:6351130-6351149 Msa0052160:intron 50.0%
GTGCAGGAGAGATAGAACTG+GGG + chr1_2:6351132-6351151 Msa0052160:intron 50.0%
AGGAGAGATAGAACTGGGGA+GGG + chr1_2:6351136-6351155 Msa0052160:intron 50.0%
GGAGGGGAAAGAGGGATATT+GGG + chr1_2:6351153-6351172 Msa0052160:intron 50.0%
CAATACATTGCCTCTTCGGG+TGG + chr1_2:6351310-6351329 Msa0052160:CDS 50.0%
CTTATGCCATGGGAAAGGTG+AGG + chr1_2:6351362-6351381 Msa0052160:CDS 50.0%
GTTAGCAGTCTCAAACTCGG+AGG - chr1_2:6351395-6351414 None:intergenic 50.0%
CTAACAAAGTCACCCGTAGC+CGG + chr1_2:6351410-6351429 Msa0052160:CDS 50.0%
TTTGGAGGAATTCCGGCTAC+GGG - chr1_2:6351425-6351444 None:intergenic 50.0%
! CTTTGGAGGAATTCCGGCTA+CGG - chr1_2:6351426-6351445 None:intergenic 50.0%
!! CTGCAGCTTTGGAGGAATTC+CGG - chr1_2:6351432-6351451 None:intergenic 50.0%
GGCAGATGAATCCGGATATG+TGG + chr1_2:6351473-6351492 Msa0052160:CDS 50.0%
! TGGTATGTGGAGCTTGCTCT+TGG + chr1_2:6351493-6351512 Msa0052160:CDS 50.0%
! TATGTGGAGCTTGCTCTTGG+TGG + chr1_2:6351496-6351515 Msa0052160:CDS 50.0%
! CTTGGTGCACATGCTGCAAA+AGG + chr1_2:6351574-6351593 Msa0052160:CDS 50.0%
ACGGATCTGCACAAAGCTTG+AGG - chr1_2:6352006-6352025 None:intergenic 50.0%
ACGTGCCTTATGATCTCTGC+TGG - chr1_2:6352055-6352074 None:intergenic 50.0%
ACCCGCATTCAGAACAATGG+AGG + chr1_2:6352136-6352155 Msa0052160:CDS 50.0%
! GCCTCCATTGTTCTGAATGC+GGG - chr1_2:6352140-6352159 None:intergenic 50.0%
! CGCCTCCATTGTTCTGAATG+CGG - chr1_2:6352141-6352160 None:intergenic 50.0%
ACGACTACAGGCCTGTTGAA+GGG + chr1_2:6352200-6352219 Msa0052160:CDS 50.0%
! GGAAGAAGCATGGACGATTG+AGG + chr1_2:6352306-6352325 Msa0052160:CDS 50.0%
! AGAAGCATGGACGATTGAGG+AGG + chr1_2:6352309-6352328 Msa0052160:CDS 50.0%
!! GCAAATCGTAGCTCTGATGG+AGG - chr1_2:6352376-6352395 None:intergenic 50.0%
GAAGCTTCTGAGCTTCCTCA+TGG + chr1_2:6352406-6352425 Msa0052160:CDS 50.0%
TGAGCTTCCTCATGGTCAGA+GGG + chr1_2:6352414-6352433 Msa0052160:CDS 50.0%
CTCTTTACCCTCTGACCATG+AGG - chr1_2:6352424-6352443 None:intergenic 50.0%
TAAGAGGACTTTCACCGGCG+AGG + chr1_2:6349684-6349703 Msa0052160:CDS 55.0%
! GATTTTGCACGTGACCTCGC+CGG - chr1_2:6349701-6349720 None:intergenic 55.0%
CGACGGAGAAGTCCTGACAT+AGG - chr1_2:6349743-6349762 None:intergenic 55.0%
CGTCGCCGGAGAAAAAACCA+AGG + chr1_2:6349758-6349777 Msa0052160:CDS 55.0%
ACAACTCCGGCGGAATACCT+TGG - chr1_2:6349778-6349797 None:intergenic 55.0%
GAAGGTCCTGATGGAACCGA+CGG + chr1_2:6349851-6349870 Msa0052160:CDS 55.0%
!! TCTTCACCGTCGGTTCCATC+AGG - chr1_2:6349860-6349879 None:intergenic 55.0%
GGAACCGACGGTGAAGATGT+TGG + chr1_2:6349863-6349882 Msa0052160:CDS 55.0%
GTCAGCCAAACCTCGGTTGT+TGG + chr1_2:6350971-6350990 Msa0052160:intron 55.0%
CAGGAGAGATAGAACTGGGG+AGG + chr1_2:6351135-6351154 Msa0052160:intron 55.0%
GGAGAGATAGAACTGGGGAG+GGG + chr1_2:6351137-6351156 Msa0052160:intron 55.0%
TAGAACTGGGGAGGGGAAAG+AGG + chr1_2:6351144-6351163 Msa0052160:intron 55.0%
AGAACTGGGGAGGGGAAAGA+GGG + chr1_2:6351145-6351164 Msa0052160:intron 55.0%
GGGAGGGGAAAGAGGGATAT+TGG + chr1_2:6351152-6351171 Msa0052160:intron 55.0%
TCCTCCAAAGCTGCAGAGTC+TGG + chr1_2:6351436-6351455 Msa0052160:CDS 55.0%
! ACCAGACTCTGCAGCTTTGG+AGG - chr1_2:6351440-6351459 None:intergenic 55.0%
TCCAAAGCTGCAGAGTCTGG+TGG + chr1_2:6351439-6351458 Msa0052160:CDS 55.0%
TCCACCAGACTCTGCAGCTT+TGG - chr1_2:6351443-6351462 None:intergenic 55.0%
GTTGCAATGGGAAGCTCGTG+TGG + chr1_2:6351536-6351555 Msa0052160:CDS 55.0%
TGCACATGCTGCAAAAGGGC+CGG + chr1_2:6351579-6351598 Msa0052160:CDS 55.0%
GACGACTACAGGCCTGTTGA+AGG + chr1_2:6352199-6352218 Msa0052160:CDS 55.0%
CGTCCATGCTTCTTCCATCC+TGG - chr1_2:6352302-6352321 None:intergenic 55.0%
GAGGTTGCGTTCAATGTCCC+TGG + chr1_2:6352328-6352347 Msa0052160:CDS 55.0%
CTGAGCTTCCTCATGGTCAG+AGG + chr1_2:6352413-6352432 Msa0052160:CDS 55.0%
!! TCAGAGGGTAAAGAGCGCTG+CGG + chr1_2:6352429-6352448 Msa0052160:CDS 55.0%
TGCGGCTACTGTTGCATACC+AGG + chr1_2:6352447-6352466 Msa0052160:CDS 55.0%
GCCGCCAGACAGGTTAACTG+TGG - chr1_2:6349449-6349468 None:intergenic 60.0%
TGTCAGGACTTCTCCGTCGC+CGG + chr1_2:6349744-6349763 Msa0052160:CDS 60.0%
GTGCACCAAGCCAAGGTGTG+TGG - chr1_2:6351564-6351583 None:intergenic 60.0%
GCAGCATGTGCACCAAGCCA+AGG - chr1_2:6351571-6351590 None:intergenic 60.0%
ATGCTGCAAAAGGGCCGGTG+AGG + chr1_2:6351584-6351603 Msa0052160:CDS 60.0%
GGAACTGCGCAACTTTGGCC+TGG - chr1_2:6352468-6352487 None:intergenic 60.0%
TCGTGTGGCGCCACACACCT+TGG + chr1_2:6351551-6351570 Msa0052160:CDS 65.0%
TGGCGCCACACACCTTGGCT+TGG + chr1_2:6351556-6351575 Msa0052160:CDS 65.0%
ACCTGAAGCGCGCGTCGAAG+AGG - chr1_2:6351610-6351629 None:intergenic 65.0%
CTCTGCTGGACCTTCGCTCC+TGG - chr1_2:6352041-6352060 None:intergenic 65.0%
GCGCGTCGAAGAGGCCTCAC+CGG - chr1_2:6351601-6351620 None:intergenic 70.0%
GCCTCTTCGACGCGCGCTTC+AGG + chr1_2:6351606-6351625 Msa0052160:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 6349425 6353086 6349425 ID=Msa0052160;Name=Msa0052160
chr1_2 mRNA 6349425 6353086 6349425 ID=Msa0052160-mRNA-1;Parent=Msa0052160;Name=Msa0052160-mRNA-1;_AED=0.02;_eAED=0.02;_QI=213|1|1|1|1|1|3|546|475
chr1_2 exon 6349425 6350093 6349425 ID=Msa0052160-mRNA-1:exon:2006;Parent=Msa0052160-mRNA-1
chr1_2 exon 6351280 6351627 6351280 ID=Msa0052160-mRNA-1:exon:2007;Parent=Msa0052160-mRNA-1
chr1_2 exon 6351917 6353086 6351917 ID=Msa0052160-mRNA-1:exon:2008;Parent=Msa0052160-mRNA-1
chr1_2 five_prime_UTR 6349425 6349637 6349425 ID=Msa0052160-mRNA-1:five_prime_utr;Parent=Msa0052160-mRNA-1
chr1_2 CDS 6349638 6350093 6349638 ID=Msa0052160-mRNA-1:cds;Parent=Msa0052160-mRNA-1
chr1_2 CDS 6351280 6351627 6351280 ID=Msa0052160-mRNA-1:cds;Parent=Msa0052160-mRNA-1
chr1_2 CDS 6351917 6352540 6351917 ID=Msa0052160-mRNA-1:cds;Parent=Msa0052160-mRNA-1
chr1_2 three_prime_UTR 6352541 6353086 6352541 ID=Msa0052160-mRNA-1:three_prime_utr;Parent=Msa0052160-mRNA-1
Gene Sequence

>Msa0052160

ATGGAGCGAAAACAAGGCTTCTTTTCATCCCTTAAAGACGAAGTAGTAAGAGGACTTTCACCGGCGAGGTCACGTGCAAAATCTCCGGCGAGAAGTGCTTCTCCTATGTCAGGACTTCTCCGTCGCCGGAGAAAAAACCAAGGTATTCCGCCGGAGTTGTTTATGACGAGATCGGGAAGTTTAAGACCGGTAGAAGCTTTATCACCGTTGAAAGAAGGTCCTGATGGAACCGACGGTGAAGATGTTGGTAACAGAGGTGAAGGAAAATGGGGTCATTGGATGAAGGGTCAATTAGCTAGAGCACCTTCCGTTTCTTCTTCGAGTTCTTCTTCTTCTTCAGCATCCAAAAAATCTGATCTGAGATTGCTTCTTGGTGTTTTGGGTGCTCCTCTTGCACCTGTTCATGTTTGTACTACTGATCCTTTTCCTCATCTCAGCATCAAAGACATTCCCATTGAAACTTCTTCTGCTCAGTACATATTGCAGCAATACATTGCCTCTTCGGGTGGTTTGAAGATTCAAAATTCAATTAACAATGCTTATGCCATGGGAAAGGTGAGGATGATAGCCTCCGAGTTTGAGACTGCTAACAAAGTCACCCGTAGCCGGAATTCCTCCAAAGCTGCAGAGTCTGGTGGATTTGTCTTGTGGCAGATGAATCCGGATATGTGGTATGTGGAGCTTGCTCTTGGTGGTAGTAAAGTTCATGCTGGTTGCAATGGGAAGCTCGTGTGGCGCCACACACCTTGGCTTGGTGCACATGCTGCAAAAGGGCCGGTGAGGCCTCTTCGACGCGCGCTTCAGGGTCTTGATCCAAGAACTACTGCTAGCATGTTTATCAATGCAAGATGCATTGGGGAGAAGAAGATAAATGAAGAGGATTGTTTCATCCTCAAGCTTTGTGCAGATCCGTCGACATTAAAAGCCAGGAGCGAAGGTCCAGCAGAGATCATAAGGCACGTTTTGTTCGGATACTTTAGTCAGAAAACAGGACTTCTTGTCCATTTGGAAGATTCCCATTTGACCCGCATTCAGAACAATGGAGGCGATGCAGTTTATTGGGAGACCACGATAAATTCATTTCTTGACGACTACAGGCCTGTTGAAGGGATTATGATTGCTCACTCGGGTCGATCTGTAGTGACACTTTTCAGGTTTGGAGAAACAGCAATGAGCCATACTAAAACCAGGATGGAAGAAGCATGGACGATTGAGGAGGTTGCGTTCAATGTCCCTGGCCTTTCCATAGACTGTTTCATTCCTCCATCAGAGCTACGATTTGCTTCTATAAGTGAAGCTTCTGAGCTTCCTCATGGTCAGAGGGTAAAGAGCGCTGCGGCTACTGTTGCATACCAGGCCAAAGTTGCGCAGTTCCAAAAATCACACGAAAGCAATACGAATAACATTAACTGGACAGTGGATGTTTAG
Protein sequence

>Msa0052160

MERKQGFFSSLKDEVVRGLSPARSRAKSPARSASPMSGLLRRRRKNQGIPPELFMTRSGSLRPVEALSPLKEGPDGTDGEDVGNRGEGKWGHWMKGQLARAPSVSSSSSSSSSASKKSDLRLLLGVLGAPLAPVHVCTTDPFPHLSIKDIPIETSSAQYILQQYIASSGGLKIQNSINNAYAMGKVRMIASEFETANKVTRSRNSSKAAESGGFVLWQMNPDMWYVELALGGSKVHAGCNGKLVWRHTPWLGAHAAKGPVRPLRRALQGLDPRTTASMFINARCIGEKKINEEDCFILKLCADPSTLKARSEGPAEIIRHVLFGYFSQKTGLLVHLEDSHLTRIQNNGGDAVYWETTINSFLDDYRPVEGIMIAHSGRSVVTLFRFGETAMSHTKTRMEEAWTIEEVAFNVPGLSIDCFIPPSELRFASISEASELPHGQRVKSAAATVAYQAKVAQFQKSHESNTNNINWTVDV*