AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0097190

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0097190 MtrunA17_Chr1g0152841 97.071 478 6 2 1 478 1 470 0.0 956
Msa0097190 MtrunA17_Chr1g0207581 71.546 485 115 6 1 478 1 469 0.0 702
Msa0097190 MtrunA17_Chr3g0134521 70.953 451 85 4 1 447 1 409 0.0 616
Msa0097190 MtrunA17_Chr2g0309941 55.914 372 150 6 65 428 15 380 3.88e-145 420
Msa0097190 MtrunA17_Chr3g0112781 44.181 421 213 4 64 464 1 419 1.34e-125 372
Msa0097190 MtrunA17_Chr1g0176101 47.671 365 167 5 67 428 4 347 1.12e-112 337
Msa0097190 MtrunA17_Chr5g0436191 43.799 379 195 6 108 472 45 419 4.76e-108 327
Msa0097190 MtrunA17_Chr1g0154851 45.272 349 178 6 82 429 30 366 5.57e-103 312
Msa0097190 MtrunA17_Chr5g0403841 44.345 336 174 4 93 428 53 375 8.67e-98 299
Msa0097190 MtrunA17_Chr3g0141481 42.400 375 200 6 62 427 6 373 1.82e-96 296
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0097190 AT3G19540.1 66.331 496 138 7 1 478 1 485 0.0 634
Msa0097190 AT1G49840.1 61.644 511 146 9 1 478 1 494 0.0 600
Msa0097190 AT1G27690.1 64.758 454 125 9 1 447 1 426 0.0 572
Msa0097190 AT1G79420.1 50.649 385 170 7 63 428 16 399 1.02e-131 387
Msa0097190 AT5G05840.1 53.560 323 137 4 119 429 66 387 1.88e-123 367
Msa0097190 AT5G06610.1 47.340 376 165 9 64 430 1 352 3.11e-110 331
Msa0097190 AT5G66740.1 45.170 352 177 5 82 430 30 368 2.88e-101 308
Msa0097190 AT3G55720.1 43.288 365 182 8 84 428 31 390 1.29e-94 293
Msa0097190 AT1G75160.1 43.953 339 174 6 99 428 60 391 4.39e-93 288

Find 169 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTACTACTTCGTCTTTA+AGG 0.085357 1_3:-2998596 None:intergenic
AATTGTTGTAGCTTTATTTA+AGG 0.136676 1_3:+3001505 Msa0097190:three_prime_UTR
GAGATTGCTTCTTGGTGTTT+TGG 0.193845 1_3:+2998935 Msa0097190:CDS
ATGGAGGCGATGCAGTTTAT+TGG 0.240082 1_3:+3001090 Msa0097190:CDS
GCCTCTTCGACGCGCGCTTC+AGG 0.284085 1_3:+3000545 Msa0097190:CDS
GCAATACGAATAACATTAAC+TGG 0.307266 1_3:+3001441 Msa0097190:CDS
GTAACAGAGGTGAAGGAAAA+TGG 0.320652 1_3:+2998814 Msa0097190:CDS
TGGTTTCAAGGCACTAATAT+TGG 0.321801 1_3:+3001869 Msa0097190:three_prime_UTR
TCTGATCTGAGATTGCTTCT+TGG 0.323802 1_3:+2998927 Msa0097190:CDS
TGAGTTGTTGTTAGTTTGTT+CGG 0.327811 1_3:-2998415 None:intergenic
TCCACCAGACTCTGCAGCTT+TGG 0.331778 1_3:-3000379 None:intergenic
TAAATAAAGCTACAACAATT+AGG 0.332430 1_3:-3001502 None:intergenic
TGTTGTGTTGAAACGGAAAT+TGG 0.334303 1_3:-2998476 None:intergenic
GGTTTGGTGATGGTAATTTC+AGG 0.334470 1_3:+3001890 Msa0097190:three_prime_UTR
CAGCAATACATTGCCTCTTC+GGG 0.342499 1_3:+3000246 Msa0097190:CDS
ATTGTTGTAGCTTTATTTAA+GGG 0.345216 1_3:+3001506 Msa0097190:three_prime_UTR
GCAGCAATACATTGCCTCTT+CGG 0.348152 1_3:+3000245 Msa0097190:CDS
CTGCAGCTTTGGAGGAATTC+CGG 0.351722 1_3:-3000368 None:intergenic
TGTTCTGAATGCGGGTCAAA+TGG 0.358520 1_3:-3001067 None:intergenic
AACAGGACTTCTTGTCCATT+TGG 0.358795 1_3:+3001037 Msa0097190:CDS
ACAGTGGCAAAGTTGTAAAA+TGG 0.359953 1_3:+2998548 Msa0097190:exon
TGGAGGCGATGCAGTTTATT+GGG 0.360194 1_3:+3001091 Msa0097190:CDS
TCTTACTACTTCGTCTTTAA+GGG 0.360832 1_3:-2998595 None:intergenic
AGCTTTATTTAAGGGCCATT+TGG 0.361123 1_3:+3001514 Msa0097190:three_prime_UTR
CTCTGCTGGACCTTCGCTCC+TGG 0.365481 1_3:-3000976 None:intergenic
GAGTTGTTGTTAGTTTGTTC+GGG 0.365785 1_3:-2998414 None:intergenic
AACATGCTAGCAGTAGTTCT+TGG 0.366168 1_3:-3000864 None:intergenic
CGTCCATGCTTCTTCCATCC+TGG 0.367626 1_3:-3001237 None:intergenic
TCCTACTTACTCTGGCTACT+TGG 0.372013 1_3:-3001990 None:intergenic
GATTCCCAATTTCACACTAT+AGG 0.398978 1_3:-3001714 None:intergenic
TCCTCCAAAGCTGCAGAGTC+TGG 0.404172 1_3:+3000375 Msa0097190:CDS
GTGAAGGAAAATGGGGTCAT+TGG 0.407465 1_3:+2998823 Msa0097190:CDS
TGCGGCTACTGCTGCATACC+AGG 0.410924 1_3:+3001385 Msa0097190:CDS
CTTTGGAGGAATTCCGGCTA+CGG 0.421308 1_3:-3000362 None:intergenic
TCAAGGCACTAATATTGGTT+TGG 0.421768 1_3:+3001874 Msa0097190:three_prime_UTR
TTATCAATGCAAGATGCATT+GGG 0.427914 1_3:+3000886 Msa0097190:CDS
ATTCATTTCTTGACGACTAC+AGG 0.428100 1_3:+3001126 Msa0097190:CDS
TGTCTTGTGGCAGATGAATC+CGG 0.434759 1_3:+3000404 Msa0097190:CDS
ACCAGACTCTGCAGCTTTGG+AGG 0.442826 1_3:-3000376 None:intergenic
CTTGGTGCACATGCTGCAAA+AGG 0.443126 1_3:+3000513 Msa0097190:CDS
TGGAGGAATGAAACAGTCTA+TGG 0.445554 1_3:-3001294 None:intergenic
AAGGTCCAGCAGAGATCATA+AGG 0.446893 1_3:+3000985 Msa0097190:CDS
TTTATCAATGCAAGATGCAT+TGG 0.453729 1_3:+3000885 Msa0097190:CDS
TAACAGAGGTGAAGGAAAAT+GGG 0.455369 1_3:+2998815 Msa0097190:CDS
CTTAAAGACGAAGTAGTAAG+AGG 0.465018 1_3:+2998597 Msa0097190:CDS
AGGGATTATGATTGCTCACT+CGG 0.466646 1_3:+3001157 Msa0097190:CDS
GACGACTACAGGCCTGTTGA+AGG 0.466767 1_3:+3001137 Msa0097190:CDS
GCCACTGTGAAGAGAGAGAA+AGG 0.468810 1_3:-2998533 None:intergenic
ACGTGCCTTATGATCTCTGC+TGG 0.469337 1_3:-3000990 None:intergenic
GAGTTGTTTATGACGAGATC+GGG 0.469641 1_3:+2998720 Msa0097190:CDS
AGAAGAACTCGAAGAAGAAA+CGG 0.472026 1_3:-2998874 None:intergenic
ACAAATTACTGCAGGTAAAA+CGG 0.472385 1_3:+3001548 Msa0097190:three_prime_UTR
GGATACTTTAGTCAGAAAAC+AGG 0.478492 1_3:+3001020 Msa0097190:CDS
TCAGTAGTACAAACATGAAC+AGG 0.483324 1_3:-2998972 None:intergenic
TTAAGGGCCATTTGGTTCAC+GGG 0.483782 1_3:+3001522 Msa0097190:three_prime_UTR
AAAGTTCATGCTGGTTGCAA+TGG 0.484470 1_3:+3000462 Msa0097190:CDS
AAAATGATTTCTATTACTCT+AGG 0.486131 1_3:+3001639 Msa0097190:three_prime_UTR
TTGATGCTGAGATGAGGAAA+AGG 0.486272 1_3:-2998996 None:intergenic
TTTAAGGGCCATTTGGTTCA+CGG 0.487658 1_3:+3001521 Msa0097190:three_prime_UTR
TGGTATGTGGAGCTTGCTCT+TGG 0.487663 1_3:+3000432 Msa0097190:CDS
AAAACGGTAAAGATTGCAGC+AGG 0.491939 1_3:+3001564 Msa0097190:three_prime_UTR
GCTTTATCACCGTTGAAAGA+AGG 0.492252 1_3:+2998762 Msa0097190:CDS
GCAATCATAATCCCTTCAAC+AGG 0.492671 1_3:-3001149 None:intergenic
GCCTCCATTGTTCTGAATGC+GGG 0.493956 1_3:-3001075 None:intergenic
TAGTCCACAGTTAACCTGTC+TGG 0.497605 1_3:+2998374 Msa0097190:five_prime_UTR
GAAATGTATTGCCGCCAGAC+AGG 0.497936 1_3:-2998388 None:intergenic
ATTAACAATGCTTATGCCAT+GGG 0.499132 1_3:+3000291 Msa0097190:CDS
AATTAACAATGCTTATGCCA+TGG 0.501037 1_3:+3000290 Msa0097190:CDS
AGCTCCACATACCACATATC+CGG 0.501178 1_3:-3000423 None:intergenic
TATGTGGAGCTTGCTCTTGG+TGG 0.503264 1_3:+3000435 Msa0097190:CDS
AGAAGTGCTTCTCCTATGTC+AGG 0.505134 1_3:+2998657 Msa0097190:CDS
GAAGCAAATCGTAGCTCTGA+TGG 0.505604 1_3:-3001314 None:intergenic
TCTTCACCGTCGGTTCCATC+AGG 0.505819 1_3:-2998786 None:intergenic
ATTAGGCTAATTCAGAAACT+TGG 0.507896 1_3:-3001485 None:intergenic
AAGTTCATGCTGGTTGCAAT+GGG 0.508862 1_3:+3000463 Msa0097190:CDS
GGAACTGCGCAACTTTGGCC+TGG 0.509019 1_3:-3001403 None:intergenic
TCAAATGGGAATCTTCCAAA+TGG 0.509295 1_3:-3001052 None:intergenic
TTTGGAGGAATTCCGGCTAC+GGG 0.510925 1_3:-3000361 None:intergenic
CACTAATATTGGTTTGGTGA+TGG 0.515225 1_3:+3001880 Msa0097190:three_prime_UTR
GAGGTTGCGTTCAATGTCCC+TGG 0.515312 1_3:+3001266 Msa0097190:CDS
GTTCTGAATGCGGGTCAAAT+GGG 0.515684 1_3:-3001066 None:intergenic
TGGCGCCACACACCTTGGCT+TGG 0.515830 1_3:+3000495 Msa0097190:CDS
ATCCGTCGACATTAAAAGCC+AGG 0.517562 1_3:+3000958 Msa0097190:CDS
CGCCTCCATTGTTCTGAATG+CGG 0.518551 1_3:-3001076 None:intergenic
AATTTAGCTCCTACTTACTC+TGG 0.519632 1_3:-3001998 None:intergenic
AAACAGTCTATGGAAAGGCC+AGG 0.521856 1_3:-3001284 None:intergenic
GGAGTTGTTTATGACGAGAT+CGG 0.522536 1_3:+2998719 Msa0097190:CDS
CCATCAGGACCTTCTTTCAA+CGG 0.524176 1_3:-2998771 None:intergenic
AAAATGGGGTCATTGGATGA+AGG 0.524835 1_3:+2998830 Msa0097190:CDS
GAGGTCACGTGCAAAATCTC+CGG 0.526889 1_3:+2998632 Msa0097190:CDS
CTGAGCTTCCTCATGGTCAG+AGG 0.527585 1_3:+3001351 Msa0097190:CDS
TTGTCATCCCGTGAACCAAA+TGG 0.529126 1_3:-3001529 None:intergenic
TTGCTGTTGTTGTGTTGAAA+CGG 0.532958 1_3:-2998483 None:intergenic
ACAACTCCGGCGGAATACCT+TGG 0.535390 1_3:-2998704 None:intergenic
TGTCAGGACTTCTCCGTCGC+CGG 0.539180 1_3:+2998673 Msa0097190:CDS
CAATACATTGCCTCTTCGGG+TGG 0.539607 1_3:+3000249 Msa0097190:CDS
AACGGTGATAAAGCTTCTAC+CGG 0.541189 1_3:-2998753 None:intergenic
TGTAAAATGGAGCGAAAACA+AGG 0.541632 1_3:+2998561 Msa0097190:exon
GCGCGTCGAAGAGGCCTCAC+CGG 0.547654 1_3:-3000537 None:intergenic
ACGACTACAGGCCTGTTGAA+GGG 0.551805 1_3:+3001138 Msa0097190:CDS
CTAGTGATCTTGAAACATCA+TGG 0.556936 1_3:-3001805 None:intergenic
GGAAGAAGCATGGACGATTG+AGG 0.557617 1_3:+3001244 Msa0097190:CDS
GATGTTGGTAACAGAGGTGA+AGG 0.558467 1_3:+2998807 Msa0097190:CDS
TCCAAAGCTGCAGAGTCTGG+TGG 0.559419 1_3:+3000378 Msa0097190:CDS
ACCTGAAGCGCGCGTCGAAG+AGG 0.560247 1_3:-3000546 None:intergenic
AGTCTGGTGGATTTGTCTTG+TGG 0.566455 1_3:+3000391 Msa0097190:CDS
GTGGACGATTATGTACATCA+AGG 0.571251 1_3:+3001668 Msa0097190:three_prime_UTR
AATCTTCAAACCACCCGAAG+AGG 0.574587 1_3:-3000259 None:intergenic
GCAGCATGTGCACCAAGCCA+AGG 0.575022 1_3:-3000507 None:intergenic
CTAACAAAGTCACCCGTAGC+CGG 0.577034 1_3:+3000349 Msa0097190:CDS
ACATTAAAAGCCAGGAGCGA+AGG 0.577670 1_3:+3000966 Msa0097190:CDS
GTTGCAATGGGAAGCTCGTG+TGG 0.578665 1_3:+3000475 Msa0097190:CDS
CCGTTGAAAGAAGGTCCTGA+TGG 0.579878 1_3:+2998771 Msa0097190:CDS
CCCTTTCTCTCTCTTCACAG+TGG 0.580573 1_3:+2998532 Msa0097190:five_prime_UTR
CAATGCTTATGCCATGGGAA+AGG 0.581877 1_3:+3000296 Msa0097190:CDS
GGAGAAGAAGATAAATGAAG+AGG 0.582179 1_3:+3000908 Msa0097190:CDS
ACGGATCTGCACAAAGCTTG+AGG 0.586516 1_3:-3000941 None:intergenic
GGTGGTAGTAAAGTTCATGC+TGG 0.588736 1_3:+3000453 Msa0097190:CDS
TGCACATGCTGCAAAAGGGC+CGG 0.591594 1_3:+3000518 Msa0097190:CDS
TTGACCCGCATTCAGAACAA+TGG 0.592514 1_3:+3001071 Msa0097190:CDS
ATGCTGCAAAAGGGCCGGTG+AGG 0.593168 1_3:+3000523 Msa0097190:CDS
GAAGCTTCTGAGCTTCCTCA+TGG 0.594259 1_3:+3001344 Msa0097190:CDS
GGGATTATGATTGCTCACTC+GGG 0.594647 1_3:+3001158 Msa0097190:CDS
GTTACCAACATCTTCACCGT+CGG 0.597204 1_3:-2998796 None:intergenic
CCACTGTGAAGAGAGAGAAA+GGG 0.600459 1_3:-2998532 None:intergenic
ATAGGAGAAGCACTTCTCGC+CGG 0.601989 1_3:-2998651 None:intergenic
CAAACATGAACAGGTGCAAG+AGG 0.602523 1_3:-2998963 None:intergenic
CGACGGAGAAGTCCTGACAT+AGG 0.603265 1_3:-2998669 None:intergenic
ACGGGATGACAAATTACTGC+AGG 0.605013 1_3:+3001540 Msa0097190:three_prime_UTR
TCGTGTGGCGCCACACACCT+TGG 0.605281 1_3:+3000490 Msa0097190:CDS
TGAGCTTCCTCATGGTCAGA+GGG 0.606171 1_3:+3001352 Msa0097190:CDS
TTGGTGCACATGCTGCAAAA+GGG 0.607369 1_3:+3000514 Msa0097190:CDS
GAGCCATACTAAAACCAGGA+TGG 0.613270 1_3:+3001223 Msa0097190:CDS
TTTGTTAGCAGTCTCAAACT+CGG 0.615182 1_3:-3000334 None:intergenic
ACCAAGTAGCCAGAGTAAGT+AGG 0.615354 1_3:+3001989 Msa0097190:three_prime_UTR
AAACCAGGATGGAAGAAGCA+TGG 0.615435 1_3:+3001234 Msa0097190:CDS
AAATGGGGTCATTGGATGAA+GGG 0.616766 1_3:+2998831 Msa0097190:CDS
GTGCACCAAGCCAAGGTGTG+TGG 0.620387 1_3:-3000500 None:intergenic
CTCTTTACCCTCTGACCATG+AGG 0.622184 1_3:-3001359 None:intergenic
TATCATCCTCACCTTTCCCA+TGG 0.623660 1_3:-3000307 None:intergenic
GAAGGTCCTGATGGAACCGA+CGG 0.626057 1_3:+2998780 Msa0097190:CDS
ACCCGCATTCAGAACAATGG+AGG 0.627450 1_3:+3001074 Msa0097190:CDS
AACAGTCTATGGAAAGGCCA+GGG 0.628998 1_3:-3001283 None:intergenic
GGCAGATGAATCCGGATATG+TGG 0.630821 1_3:+3000412 Msa0097190:CDS
CAATGAGCCATACTAAAACC+AGG 0.631927 1_3:+3001219 Msa0097190:CDS
GAATGAAACAGTCTATGGAA+AGG 0.638202 1_3:-3001289 None:intergenic
GAATCCGGATATGTGGTATG+TGG 0.641508 1_3:+3000419 Msa0097190:CDS
TCACACTATAGGAAAAGATG+TGG 0.643030 1_3:-3001703 None:intergenic
GGTGAAGATGTTGGTAACAG+AGG 0.650817 1_3:+2998801 Msa0097190:CDS
TATCAATGCAAGATGCATTG+GGG 0.653185 1_3:+3000887 Msa0097190:CDS
GTCAAGAAATGAATTTATCG+TGG 0.654911 1_3:-3001117 None:intergenic
AGTAGTAAGAGGACTTTCAC+CGG 0.655141 1_3:+2998608 Msa0097190:CDS
GAGATCGGGAAGTTTAAGAC+CGG 0.655639 1_3:+2998734 Msa0097190:CDS
AGAAGCATGGACGATTGAGG+AGG 0.662743 1_3:+3001247 Msa0097190:CDS
GATCTCGTCATAAACAACTC+CGG 0.670627 1_3:-2998717 None:intergenic
ATGTCTTTGATGCTGAGATG+AGG 0.670912 1_3:-2999002 None:intergenic
AACAGAGGTGAAGGAAAATG+GGG 0.671749 1_3:+2998816 Msa0097190:CDS
TCCACAGTTAACCTGTCTGG+CGG 0.672871 1_3:+2998377 Msa0097190:five_prime_UTR
TAAGAGGACTTTCACCGGCG+AGG 0.673982 1_3:+2998613 Msa0097190:CDS
GAACTCGAAGAAGAAACGGA+AGG 0.676634 1_3:-2998870 None:intergenic
GAATAACATTAACTGGACAG+TGG 0.679369 1_3:+3001448 Msa0097190:CDS
GCAAATCGTAGCTCTGATGG+AGG 0.679907 1_3:-3001311 None:intergenic
GGAACCGACGGTGAAGATGT+TGG 0.691934 1_3:+2998792 Msa0097190:CDS
GTTAGCAGTCTCAAACTCGG+AGG 0.710125 1_3:-3000331 None:intergenic
GCCGCCAGACAGGTTAACTG+TGG 0.712330 1_3:-2998378 None:intergenic
CTCGTCATAAACAACTCCGG+CGG 0.713466 1_3:-2998714 None:intergenic
AAACGGTAAAGATTGCAGCA+GGG 0.753590 1_3:+3001565 Msa0097190:three_prime_UTR
TCAGAGGGTAAAGAGCGCTG+CGG 0.765849 1_3:+3001367 Msa0097190:CDS
CTTATGCCATGGGAAAGGTG+AGG 0.780728 1_3:+3000301 Msa0097190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAATTAATTTTAACATGTTT+GGG - chr1_3:2999834-2999853 None:intergenic 15.0%
!!! ACAATTAATTTTAACATGTT+TGG - chr1_3:2999835-2999854 None:intergenic 15.0%
!! GTTATGTTTGAAAATCTAAT+AGG + chr1_3:2999389-2999408 Msa0097190:intron 20.0%
!! AGAACAAAAAAAACAGAAAA+AGG - chr1_3:2999456-2999475 None:intergenic 20.0%
!! AAACTAACTTATGAATGATA+AGG - chr1_3:3000658-3000677 None:intergenic 20.0%
!!! ATTTCTGTTATAGTTTGTTA+AGG + chr1_3:3000679-3000698 Msa0097190:intron 20.0%
!!! TTTCTGTTATAGTTTGTTAA+GGG + chr1_3:3000680-3000699 Msa0097190:intron 20.0%
!! TAAATAAAGCTACAACAATT+AGG - chr1_3:3001505-3001524 None:intergenic 20.0%
!!! AATTGTTGTAGCTTTATTTA+AGG + chr1_3:3001505-3001524 Msa0097190:three_prime_UTR 20.0%
!!! ATTGTTGTAGCTTTATTTAA+GGG + chr1_3:3001506-3001525 Msa0097190:three_prime_UTR 20.0%
!! AAAATGATTTCTATTACTCT+AGG + chr1_3:3001639-3001658 Msa0097190:three_prime_UTR 20.0%
! GAGATAGAAAAACTAACAAT+GGG - chr1_3:2999029-2999048 None:intergenic 25.0%
! AGAGATAGAAAAACTAACAA+TGG - chr1_3:2999030-2999049 None:intergenic 25.0%
! GAAAATCTAATAGGCTAATT+AGG + chr1_3:2999398-2999417 Msa0097190:intron 25.0%
!!! TTTTTGTTCTGTGTTTTGAT+TGG + chr1_3:2999466-2999485 Msa0097190:intron 25.0%
! GATGTGATTTATGTTTAGAA+AGG + chr1_3:2999685-2999704 Msa0097190:intron 25.0%
! TTGTATTCGTGTTTAATACA+TGG + chr1_3:2999851-2999870 Msa0097190:intron 25.0%
!!! AGTTACTTTTGATGCTATAA+TGG + chr1_3:3000124-3000143 Msa0097190:intron 25.0%
!! AGAGGCATATATGTTAATTT+AGG - chr1_3:3000596-3000615 None:intergenic 25.0%
! ACTACTTATCTAATAACAAG+AGG - chr1_3:3000614-3000633 None:intergenic 25.0%
! TTATGAATGATAAGGAGAAA+AGG - chr1_3:3000650-3000669 None:intergenic 25.0%
!!! TATAGTTTGTTAAGGGATAT+TGG + chr1_3:3000687-3000706 Msa0097190:intron 25.0%
!!! ATAGTTTGTTAAGGGATATT+GGG + chr1_3:3000688-3000707 Msa0097190:intron 25.0%
! CAAGTCTAAATTGATAAACA+TGG - chr1_3:3000801-3000820 None:intergenic 25.0%
!!! TTAGACTTGTTTCTATGTAT+AGG + chr1_3:3000833-3000852 Msa0097190:intron 25.0%
!!! TAGACTTGTTTCTATGTATA+GGG + chr1_3:3000834-3000853 Msa0097190:intron 25.0%
!! TTTCTATTACTCTAGGTTTT+TGG + chr1_3:3001646-3001665 Msa0097190:three_prime_UTR 25.0%
!! TTTTCCTATAGTGTGAAATT+GGG + chr1_3:3001710-3001729 Msa0097190:three_prime_UTR 25.0%
!!! TTCAACAGTTTTATCAAAGA+TGG - chr1_3:3001924-3001943 None:intergenic 25.0%
!! TGAGTTGTTGTTAGTTTGTT+CGG - chr1_3:2998418-2998437 None:intergenic 30.0%
TCTTACTACTTCGTCTTTAA+GGG - chr1_3:2998598-2998617 None:intergenic 30.0%
!!! CAATCTCAGATCAGATTTTT+TGG - chr1_3:2998922-2998941 None:intergenic 30.0%
!!! TTTTTTTCCTGTTAATCCTC+CGG + chr1_3:2999061-2999080 Msa0097190:intron 30.0%
! TTGTTTATATTTGAGACCAG+AGG + chr1_3:2999209-2999228 Msa0097190:intron 30.0%
! TGTTTATATTTGAGACCAGA+GGG + chr1_3:2999210-2999229 Msa0097190:intron 30.0%
ATCAATTGATTGAGCTTAAG+TGG - chr1_3:2999330-2999349 None:intergenic 30.0%
CTAATTAGGTGAAACATCAT+AGG + chr1_3:2999412-2999431 Msa0097190:intron 30.0%
!!! GTTTTGACTTTTGAGTAACT+TGG + chr1_3:2999508-2999527 Msa0097190:intron 30.0%
TTGAGTGTGAAAATCATGTT+TGG + chr1_3:2999737-2999756 Msa0097190:intron 30.0%
GTTAATTCTAACTTGAAGCT+AGG - chr1_3:2999779-2999798 None:intergenic 30.0%
CAAGTTAGAATTAACTCTGT+AGG + chr1_3:2999784-2999803 Msa0097190:intron 30.0%
ATGGTCTATTGGATGATATT+CGG + chr1_3:3000044-3000063 Msa0097190:intron 30.0%
! GGTTTCTCTTTTTCTACATT+TGG + chr1_3:3000145-3000164 Msa0097190:intron 30.0%
!! ATATAATTTGCTGTTGTTGC+AGG + chr1_3:3000197-3000216 Msa0097190:intron 30.0%
AATTAACAATGCTTATGCCA+TGG + chr1_3:3000290-3000309 Msa0097190:CDS 30.0%
ATTAACAATGCTTATGCCAT+GGG + chr1_3:3000291-3000310 Msa0097190:CDS 30.0%
TTTATCAATGCAAGATGCAT+TGG + chr1_3:3000885-3000904 Msa0097190:CDS 30.0%
TTATCAATGCAAGATGCATT+GGG + chr1_3:3000886-3000905 Msa0097190:CDS 30.0%
GTCAAGAAATGAATTTATCG+TGG - chr1_3:3001120-3001139 None:intergenic 30.0%
! TATTGCTTTCGTGTGATTTT+TGG - chr1_3:3001427-3001446 None:intergenic 30.0%
GCAATACGAATAACATTAAC+TGG + chr1_3:3001441-3001460 Msa0097190:CDS 30.0%
ATTAGGCTAATTCAGAAACT+TGG - chr1_3:3001488-3001507 None:intergenic 30.0%
ACAAATTACTGCAGGTAAAA+CGG + chr1_3:3001548-3001567 Msa0097190:three_prime_UTR 30.0%
! CTTTTCCTATAGTGTGAAAT+TGG + chr1_3:3001709-3001728 Msa0097190:three_prime_UTR 30.0%
! TTTTCGTTGCTGGAAAATTT+TGG + chr1_3:3001843-3001862 Msa0097190:three_prime_UTR 30.0%
!!! AAATTTTGGCTTTGGTTTCA+AGG + chr1_3:3001857-3001876 Msa0097190:three_prime_UTR 30.0%
!! GAGTTGTTGTTAGTTTGTTC+GGG - chr1_3:2998417-2998436 None:intergenic 35.0%
TGTTGTGTTGAAACGGAAAT+TGG - chr1_3:2998479-2998498 None:intergenic 35.0%
! TTGCTGTTGTTGTGTTGAAA+CGG - chr1_3:2998486-2998505 None:intergenic 35.0%
ACAGTGGCAAAGTTGTAAAA+TGG + chr1_3:2998548-2998567 Msa0097190:exon 35.0%
TGTAAAATGGAGCGAAAACA+AGG + chr1_3:2998561-2998580 Msa0097190:exon 35.0%
CTCTTACTACTTCGTCTTTA+AGG - chr1_3:2998599-2998618 None:intergenic 35.0%
CTTAAAGACGAAGTAGTAAG+AGG + chr1_3:2998597-2998616 Msa0097190:CDS 35.0%
!!! GAATACCTTGGTTTTTTCTC+CGG - chr1_3:2998695-2998714 None:intergenic 35.0%
TAACAGAGGTGAAGGAAAAT+GGG + chr1_3:2998815-2998834 Msa0097190:CDS 35.0%
AGAAGAACTCGAAGAAGAAA+CGG - chr1_3:2998877-2998896 None:intergenic 35.0%
!!! AGATTGCTTCTTGGTGTTTT+GGG + chr1_3:2998936-2998955 Msa0097190:CDS 35.0%
TCAGTAGTACAAACATGAAC+AGG - chr1_3:2998975-2998994 None:intergenic 35.0%
ATAACAGATTCCCTGATAAC+CGG - chr1_3:2999083-2999102 None:intergenic 35.0%
TCAACACATTAATCGAACTC+AGG + chr1_3:2999260-2999279 Msa0097190:intron 35.0%
ATTAATCGAACTCAGGTTCT+CGG + chr1_3:2999267-2999286 Msa0097190:intron 35.0%
! ATTGGTAGCTAGGAAATTGA+TGG + chr1_3:2999484-2999503 Msa0097190:intron 35.0%
! TTGGTAGCTAGGAAATTGAT+GGG + chr1_3:2999485-2999504 Msa0097190:intron 35.0%
TGCTATACTATGTGTGTGTT+TGG + chr1_3:2999590-2999609 Msa0097190:intron 35.0%
TGAAGCTAGGATTATAGCTT+TGG - chr1_3:2999766-2999785 None:intergenic 35.0%
CGTGTTTAATACATGGTTTG+TGG + chr1_3:2999858-2999877 Msa0097190:intron 35.0%
TTAGATTAATCCAACAACCG+AGG - chr1_3:2999923-2999942 None:intergenic 35.0%
TGGTCTATTGGATGATATTC+GGG + chr1_3:3000045-3000064 Msa0097190:intron 35.0%
AGTAATGCAATGTAGTGTTG+TGG + chr1_3:3000172-3000191 Msa0097190:intron 35.0%
TTTGTTAGCAGTCTCAAACT+CGG - chr1_3:3000337-3000356 None:intergenic 35.0%
TATCAATGCAAGATGCATTG+GGG + chr1_3:3000887-3000906 Msa0097190:CDS 35.0%
GGAGAAGAAGATAAATGAAG+AGG + chr1_3:3000908-3000927 Msa0097190:CDS 35.0%
!! ATCATAAGGCACGTTTTGTT+CGG + chr1_3:3000999-3001018 Msa0097190:CDS 35.0%
GGATACTTTAGTCAGAAAAC+AGG + chr1_3:3001020-3001039 Msa0097190:CDS 35.0%
TCAAATGGGAATCTTCCAAA+TGG - chr1_3:3001055-3001074 None:intergenic 35.0%
ATTCATTTCTTGACGACTAC+AGG + chr1_3:3001126-3001145 Msa0097190:CDS 35.0%
GAATGAAACAGTCTATGGAA+AGG - chr1_3:3001292-3001311 None:intergenic 35.0%
GAATAACATTAACTGGACAG+TGG + chr1_3:3001448-3001467 Msa0097190:CDS 35.0%
!! AGCTTTATTTAAGGGCCATT+TGG + chr1_3:3001514-3001533 Msa0097190:three_prime_UTR 35.0%
!! CTATTACTCTAGGTTTTTGG+TGG + chr1_3:3001649-3001668 Msa0097190:three_prime_UTR 35.0%
TCACACTATAGGAAAAGATG+TGG - chr1_3:3001706-3001725 None:intergenic 35.0%
GATTCCCAATTTCACACTAT+AGG - chr1_3:3001717-3001736 None:intergenic 35.0%
CTAGTGATCTTGAAACATCA+TGG - chr1_3:3001808-3001827 None:intergenic 35.0%
!! TATAACCTAGTTTTCGTTGC+TGG + chr1_3:3001833-3001852 Msa0097190:three_prime_UTR 35.0%
! ATTTTCCAGCAACGAAAACT+AGG - chr1_3:3001841-3001860 None:intergenic 35.0%
!!! TTGCTGGAAAATTTTGGCTT+TGG + chr1_3:3001849-3001868 Msa0097190:three_prime_UTR 35.0%
! TGGTTTCAAGGCACTAATAT+TGG + chr1_3:3001869-3001888 Msa0097190:three_prime_UTR 35.0%
! TCAAGGCACTAATATTGGTT+TGG + chr1_3:3001874-3001893 Msa0097190:three_prime_UTR 35.0%
!! CACTAATATTGGTTTGGTGA+TGG + chr1_3:3001880-3001899 Msa0097190:three_prime_UTR 35.0%
! AATTTAGCTCCTACTTACTC+TGG - chr1_3:3002001-3002020 None:intergenic 35.0%
AGTAGTAAGAGGACTTTCAC+CGG + chr1_3:2998608-2998627 Msa0097190:CDS 40.0%
! AAAAAACCAAGGTATTCCGC+CGG + chr1_3:2998698-2998717 Msa0097190:CDS 40.0%
GATCTCGTCATAAACAACTC+CGG - chr1_3:2998720-2998739 None:intergenic 40.0%
GGAGTTGTTTATGACGAGAT+CGG + chr1_3:2998719-2998738 Msa0097190:CDS 40.0%
GAGTTGTTTATGACGAGATC+GGG + chr1_3:2998720-2998739 Msa0097190:CDS 40.0%
AACGGTGATAAAGCTTCTAC+CGG - chr1_3:2998756-2998775 None:intergenic 40.0%
GCTTTATCACCGTTGAAAGA+AGG + chr1_3:2998762-2998781 Msa0097190:CDS 40.0%
GTAACAGAGGTGAAGGAAAA+TGG + chr1_3:2998814-2998833 Msa0097190:CDS 40.0%
AACAGAGGTGAAGGAAAATG+GGG + chr1_3:2998816-2998835 Msa0097190:CDS 40.0%
AAAATGGGGTCATTGGATGA+AGG + chr1_3:2998830-2998849 Msa0097190:CDS 40.0%
AAATGGGGTCATTGGATGAA+GGG + chr1_3:2998831-2998850 Msa0097190:CDS 40.0%
! TCTGATCTGAGATTGCTTCT+TGG + chr1_3:2998927-2998946 Msa0097190:CDS 40.0%
!!! GAGATTGCTTCTTGGTGTTT+TGG + chr1_3:2998935-2998954 Msa0097190:CDS 40.0%
TTGATGCTGAGATGAGGAAA+AGG - chr1_3:2998999-2999018 None:intergenic 40.0%
ATGTCTTTGATGCTGAGATG+AGG - chr1_3:2999005-2999024 None:intergenic 40.0%
TGTTAATCCTCCGGTTATCA+GGG + chr1_3:2999070-2999089 Msa0097190:intron 40.0%
TCAGGGAATCTGTTATTCTC+TGG + chr1_3:2999087-2999106 Msa0097190:intron 40.0%
TTAATCGAACTCAGGTTCTC+GGG + chr1_3:2999268-2999287 Msa0097190:intron 40.0%
TCTCGAATGATTCGTGCTAA+GGG + chr1_3:2999294-2999313 Msa0097190:intron 40.0%
!!! CTGTGTTTTGATTGGTAGCT+AGG + chr1_3:2999474-2999493 Msa0097190:intron 40.0%
TGGTAGCTAGGAAATTGATG+GGG + chr1_3:2999486-2999505 Msa0097190:intron 40.0%
TTGAGTAACTTGGCAAGACT+AGG + chr1_3:2999518-2999537 Msa0097190:intron 40.0%
! ACTATGTGTGTGTTTGGTTC+TGG + chr1_3:2999596-2999615 Msa0097190:intron 40.0%
TTAATCCAACAACCGAGGTT+TGG - chr1_3:2999918-2999937 None:intergenic 40.0%
AACAGCCAAGATATACACGT+TGG + chr1_3:2999941-2999960 Msa0097190:intron 40.0%
ACAGCCAAGATATACACGTT+GGG + chr1_3:2999942-2999961 Msa0097190:intron 40.0%
CAGTATCTCCAGCCAAATTT+CGG - chr1_3:2999994-3000013 None:intergenic 40.0%
ATACTGCAAAGGATCCAAGT+TGG + chr1_3:3000008-3000027 Msa0097190:intron 40.0%
TACTGCAAAGGATCCAAGTT+GGG + chr1_3:3000009-3000028 Msa0097190:intron 40.0%
TTTGTGCTCTCATGGTCTAT+TGG + chr1_3:3000033-3000052 Msa0097190:intron 40.0%
! AAAGTTCATGCTGGTTGCAA+TGG + chr1_3:3000462-3000481 Msa0097190:CDS 40.0%
! AAGTTCATGCTGGTTGCAAT+GGG + chr1_3:3000463-3000482 Msa0097190:CDS 40.0%
ACATGGTAGCAGTTGTTCTT+GGG - chr1_3:3000784-3000803 None:intergenic 40.0%
AACATGGTAGCAGTTGTTCT+TGG - chr1_3:3000785-3000804 None:intergenic 40.0%
AACATGCTAGCAGTAGTTCT+TGG - chr1_3:3000867-3000886 None:intergenic 40.0%
AACAGGACTTCTTGTCCATT+TGG + chr1_3:3001037-3001056 Msa0097190:CDS 40.0%
GCAATCATAATCCCTTCAAC+AGG - chr1_3:3001152-3001171 None:intergenic 40.0%
AGGGATTATGATTGCTCACT+CGG + chr1_3:3001157-3001176 Msa0097190:CDS 40.0%
! GATCTGTAGTGACACTTTTC+AGG + chr1_3:3001183-3001202 Msa0097190:CDS 40.0%
!!! GTAGTGACACTTTTCAGGTT+TGG + chr1_3:3001188-3001207 Msa0097190:CDS 40.0%
CAATGAGCCATACTAAAACC+AGG + chr1_3:3001219-3001238 Msa0097190:CDS 40.0%
!!! CTTCCATCCTGGTTTTAGTA+TGG - chr1_3:3001229-3001248 None:intergenic 40.0%
TGGAGGAATGAAACAGTCTA+TGG - chr1_3:3001297-3001316 None:intergenic 40.0%
!!! TTTTTGGAACTGCGCAACTT+TGG - chr1_3:3001411-3001430 None:intergenic 40.0%
! TTTAAGGGCCATTTGGTTCA+CGG + chr1_3:3001521-3001540 Msa0097190:three_prime_UTR 40.0%
AAAACGGTAAAGATTGCAGC+AGG + chr1_3:3001564-3001583 Msa0097190:three_prime_UTR 40.0%
AAACGGTAAAGATTGCAGCA+GGG + chr1_3:3001565-3001584 Msa0097190:three_prime_UTR 40.0%
GTGGACGATTATGTACATCA+AGG + chr1_3:3001668-3001687 Msa0097190:three_prime_UTR 40.0%
!! GGTTTGGTGATGGTAATTTC+AGG + chr1_3:3001890-3001909 Msa0097190:three_prime_UTR 40.0%
TAGTCCACAGTTAACCTGTC+TGG + chr1_3:2998374-2998393 Msa0097190:five_prime_UTR 45.0%
CCACTGTGAAGAGAGAGAAA+GGG - chr1_3:2998535-2998554 None:intergenic 45.0%
!! AGAAGTGCTTCTCCTATGTC+AGG + chr1_3:2998657-2998676 Msa0097190:CDS 45.0%
! GAGATCGGGAAGTTTAAGAC+CGG + chr1_3:2998734-2998753 Msa0097190:CDS 45.0%
CCATCAGGACCTTCTTTCAA+CGG - chr1_3:2998774-2998793 None:intergenic 45.0%
GTTACCAACATCTTCACCGT+CGG - chr1_3:2998799-2998818 None:intergenic 45.0%
!! GGTGAAGATGTTGGTAACAG+AGG + chr1_3:2998801-2998820 Msa0097190:CDS 45.0%
!! GATGTTGGTAACAGAGGTGA+AGG + chr1_3:2998807-2998826 Msa0097190:CDS 45.0%
GTGAAGGAAAATGGGGTCAT+TGG + chr1_3:2998823-2998842 Msa0097190:CDS 45.0%
GAACTCGAAGAAGAAACGGA+AGG - chr1_3:2998873-2998892 None:intergenic 45.0%
CAAACATGAACAGGTGCAAG+AGG - chr1_3:2998966-2998985 None:intergenic 45.0%
CTGATAACCGGAGGATTAAC+AGG - chr1_3:2999071-2999090 None:intergenic 45.0%
CTGTTAATCCTCCGGTTATC+AGG + chr1_3:2999069-2999088 Msa0097190:intron 45.0%
CAAGCTTTCATAACTCCCTC+TGG - chr1_3:2999228-2999247 None:intergenic 45.0%
GTCTCGAATGATTCGTGCTA+AGG + chr1_3:2999293-2999312 Msa0097190:intron 45.0%
GTATCTTGTCAGCCAAACCT+CGG + chr1_3:2999903-2999922 Msa0097190:intron 45.0%
ACGACCCAACGTGTATATCT+TGG - chr1_3:2999949-2999968 None:intergenic 45.0%
! CAAATTTCGGTATCGGGAGT+TGG - chr1_3:2999981-3000000 None:intergenic 45.0%
CAACTCCCGATACCGAAATT+TGG + chr1_3:2999979-2999998 Msa0097190:intron 45.0%
TCCAGCCAAATTTCGGTATC+GGG - chr1_3:2999987-3000006 None:intergenic 45.0%
CTCCAGCCAAATTTCGGTAT+CGG - chr1_3:2999988-3000007 None:intergenic 45.0%
TTTGGCTGGAGATACTGCAA+AGG + chr1_3:2999997-3000016 Msa0097190:intron 45.0%
! TGAGAGCACAAAACCCAACT+TGG - chr1_3:3000025-3000044 None:intergenic 45.0%
!! AGTTGGGTTTTGTGCTCTCA+TGG + chr1_3:3000025-3000044 Msa0097190:intron 45.0%
TGTGCAGGAGAGATAGAACT+GGG + chr1_3:3000070-3000089 Msa0097190:intron 45.0%
GCAGCAATACATTGCCTCTT+CGG + chr1_3:3000245-3000264 Msa0097190:CDS 45.0%
CAGCAATACATTGCCTCTTC+GGG + chr1_3:3000246-3000265 Msa0097190:CDS 45.0%
AATCTTCAAACCACCCGAAG+AGG - chr1_3:3000262-3000281 None:intergenic 45.0%
CAATGCTTATGCCATGGGAA+AGG + chr1_3:3000296-3000315 Msa0097190:CDS 45.0%
TATCATCCTCACCTTTCCCA+TGG - chr1_3:3000310-3000329 None:intergenic 45.0%
!! AGTCTGGTGGATTTGTCTTG+TGG + chr1_3:3000391-3000410 Msa0097190:CDS 45.0%
TGTCTTGTGGCAGATGAATC+CGG + chr1_3:3000404-3000423 Msa0097190:CDS 45.0%
GAATCCGGATATGTGGTATG+TGG + chr1_3:3000419-3000438 Msa0097190:CDS 45.0%
AGCTCCACATACCACATATC+CGG - chr1_3:3000426-3000445 None:intergenic 45.0%
GGTGGTAGTAAAGTTCATGC+TGG + chr1_3:3000453-3000472 Msa0097190:CDS 45.0%
TTGGTGCACATGCTGCAAAA+GGG + chr1_3:3000514-3000533 Msa0097190:CDS 45.0%
ATCCGTCGACATTAAAAGCC+AGG + chr1_3:3000958-3000977 Msa0097190:CDS 45.0%
!! CTCCTGGCTTTTAATGTCGA+CGG - chr1_3:3000963-3000982 None:intergenic 45.0%
ACATTAAAAGCCAGGAGCGA+AGG + chr1_3:3000966-3000985 Msa0097190:CDS 45.0%
AAGGTCCAGCAGAGATCATA+AGG + chr1_3:3000985-3001004 Msa0097190:CDS 45.0%
! GTTCTGAATGCGGGTCAAAT+GGG - chr1_3:3001069-3001088 None:intergenic 45.0%
! TGTTCTGAATGCGGGTCAAA+TGG - chr1_3:3001070-3001089 None:intergenic 45.0%
TTGACCCGCATTCAGAACAA+TGG + chr1_3:3001071-3001090 Msa0097190:CDS 45.0%
ATGGAGGCGATGCAGTTTAT+TGG + chr1_3:3001090-3001109 Msa0097190:CDS 45.0%
TGGAGGCGATGCAGTTTATT+GGG + chr1_3:3001091-3001110 Msa0097190:CDS 45.0%
GGGATTATGATTGCTCACTC+GGG + chr1_3:3001158-3001177 Msa0097190:CDS 45.0%
GAGCCATACTAAAACCAGGA+TGG + chr1_3:3001223-3001242 Msa0097190:CDS 45.0%
AAACCAGGATGGAAGAAGCA+TGG + chr1_3:3001234-3001253 Msa0097190:CDS 45.0%
AACAGTCTATGGAAAGGCCA+GGG - chr1_3:3001286-3001305 None:intergenic 45.0%
AAACAGTCTATGGAAAGGCC+AGG - chr1_3:3001287-3001306 None:intergenic 45.0%
!! GAAGCAAATCGTAGCTCTGA+TGG - chr1_3:3001317-3001336 None:intergenic 45.0%
! TTAAGGGCCATTTGGTTCAC+GGG + chr1_3:3001522-3001541 Msa0097190:three_prime_UTR 45.0%
TTGTCATCCCGTGAACCAAA+TGG - chr1_3:3001532-3001551 None:intergenic 45.0%
ACGGGATGACAAATTACTGC+AGG + chr1_3:3001540-3001559 Msa0097190:three_prime_UTR 45.0%
ACCAAGTAGCCAGAGTAAGT+AGG + chr1_3:3001989-3002008 Msa0097190:three_prime_UTR 45.0%
TCCTACTTACTCTGGCTACT+TGG - chr1_3:3001993-3002012 None:intergenic 45.0%
TCCACAGTTAACCTGTCTGG+CGG + chr1_3:2998377-2998396 Msa0097190:five_prime_UTR 50.0%
GAAATGTATTGCCGCCAGAC+AGG - chr1_3:2998391-2998410 None:intergenic 50.0%
CCCTTTCTCTCTCTTCACAG+TGG + chr1_3:2998532-2998551 Msa0097190:five_prime_UTR 50.0%
GCCACTGTGAAGAGAGAGAA+AGG - chr1_3:2998536-2998555 None:intergenic 50.0%
GAGGTCACGTGCAAAATCTC+CGG + chr1_3:2998632-2998651 Msa0097190:CDS 50.0%
!! ATAGGAGAAGCACTTCTCGC+CGG - chr1_3:2998654-2998673 None:intergenic 50.0%
!!! CTTGGTTTTTTCTCCGGCGA+CGG - chr1_3:2998689-2998708 None:intergenic 50.0%
CTCGTCATAAACAACTCCGG+CGG - chr1_3:2998717-2998736 None:intergenic 50.0%
CCGTTGAAAGAAGGTCCTGA+TGG + chr1_3:2998771-2998790 Msa0097190:CDS 50.0%
ACAGATTCCCTGATAACCGG+AGG - chr1_3:2999080-2999099 None:intergenic 50.0%
TCCCGATACCGAAATTTGGC+TGG + chr1_3:2999983-3000002 Msa0097190:intron 50.0%
GATGATATTCGGGTGTGTGC+AGG + chr1_3:3000055-3000074 Msa0097190:intron 50.0%
GTGTGCAGGAGAGATAGAAC+TGG + chr1_3:3000069-3000088 Msa0097190:intron 50.0%
GTGCAGGAGAGATAGAACTG+GGG + chr1_3:3000071-3000090 Msa0097190:intron 50.0%
AGGAGAGATAGAACTGGGGA+GGG + chr1_3:3000075-3000094 Msa0097190:intron 50.0%
GGAGGGGAAAGAGGGATATT+GGG + chr1_3:3000092-3000111 Msa0097190:intron 50.0%
CAATACATTGCCTCTTCGGG+TGG + chr1_3:3000249-3000268 Msa0097190:CDS 50.0%
CTTATGCCATGGGAAAGGTG+AGG + chr1_3:3000301-3000320 Msa0097190:CDS 50.0%
GTTAGCAGTCTCAAACTCGG+AGG - chr1_3:3000334-3000353 None:intergenic 50.0%
CTAACAAAGTCACCCGTAGC+CGG + chr1_3:3000349-3000368 Msa0097190:CDS 50.0%
TTTGGAGGAATTCCGGCTAC+GGG - chr1_3:3000364-3000383 None:intergenic 50.0%
! CTTTGGAGGAATTCCGGCTA+CGG - chr1_3:3000365-3000384 None:intergenic 50.0%
!! CTGCAGCTTTGGAGGAATTC+CGG - chr1_3:3000371-3000390 None:intergenic 50.0%
GGCAGATGAATCCGGATATG+TGG + chr1_3:3000412-3000431 Msa0097190:CDS 50.0%
! TGGTATGTGGAGCTTGCTCT+TGG + chr1_3:3000432-3000451 Msa0097190:CDS 50.0%
! TATGTGGAGCTTGCTCTTGG+TGG + chr1_3:3000435-3000454 Msa0097190:CDS 50.0%
! CTTGGTGCACATGCTGCAAA+AGG + chr1_3:3000513-3000532 Msa0097190:CDS 50.0%
ACGGATCTGCACAAAGCTTG+AGG - chr1_3:3000944-3000963 None:intergenic 50.0%
ACGTGCCTTATGATCTCTGC+TGG - chr1_3:3000993-3001012 None:intergenic 50.0%
ACCCGCATTCAGAACAATGG+AGG + chr1_3:3001074-3001093 Msa0097190:CDS 50.0%
! GCCTCCATTGTTCTGAATGC+GGG - chr1_3:3001078-3001097 None:intergenic 50.0%
! CGCCTCCATTGTTCTGAATG+CGG - chr1_3:3001079-3001098 None:intergenic 50.0%
ACGACTACAGGCCTGTTGAA+GGG + chr1_3:3001138-3001157 Msa0097190:CDS 50.0%
! GGAAGAAGCATGGACGATTG+AGG + chr1_3:3001244-3001263 Msa0097190:CDS 50.0%
! AGAAGCATGGACGATTGAGG+AGG + chr1_3:3001247-3001266 Msa0097190:CDS 50.0%
!! GCAAATCGTAGCTCTGATGG+AGG - chr1_3:3001314-3001333 None:intergenic 50.0%
GAAGCTTCTGAGCTTCCTCA+TGG + chr1_3:3001344-3001363 Msa0097190:CDS 50.0%
TGAGCTTCCTCATGGTCAGA+GGG + chr1_3:3001352-3001371 Msa0097190:CDS 50.0%
CTCTTTACCCTCTGACCATG+AGG - chr1_3:3001362-3001381 None:intergenic 50.0%
TAAGAGGACTTTCACCGGCG+AGG + chr1_3:2998613-2998632 Msa0097190:CDS 55.0%
! GATTTTGCACGTGACCTCGC+CGG - chr1_3:2998630-2998649 None:intergenic 55.0%
CGACGGAGAAGTCCTGACAT+AGG - chr1_3:2998672-2998691 None:intergenic 55.0%
CGTCGCCGGAGAAAAAACCA+AGG + chr1_3:2998687-2998706 Msa0097190:CDS 55.0%
ACAACTCCGGCGGAATACCT+TGG - chr1_3:2998707-2998726 None:intergenic 55.0%
GAAGGTCCTGATGGAACCGA+CGG + chr1_3:2998780-2998799 Msa0097190:CDS 55.0%
!! TCTTCACCGTCGGTTCCATC+AGG - chr1_3:2998789-2998808 None:intergenic 55.0%
GGAACCGACGGTGAAGATGT+TGG + chr1_3:2998792-2998811 Msa0097190:CDS 55.0%
GTCAGCCAAACCTCGGTTGT+TGG + chr1_3:2999910-2999929 Msa0097190:intron 55.0%
CAGGAGAGATAGAACTGGGG+AGG + chr1_3:3000074-3000093 Msa0097190:intron 55.0%
GGAGAGATAGAACTGGGGAG+GGG + chr1_3:3000076-3000095 Msa0097190:intron 55.0%
TAGAACTGGGGAGGGGAAAG+AGG + chr1_3:3000083-3000102 Msa0097190:intron 55.0%
AGAACTGGGGAGGGGAAAGA+GGG + chr1_3:3000084-3000103 Msa0097190:intron 55.0%
GGGAGGGGAAAGAGGGATAT+TGG + chr1_3:3000091-3000110 Msa0097190:intron 55.0%
TCCTCCAAAGCTGCAGAGTC+TGG + chr1_3:3000375-3000394 Msa0097190:CDS 55.0%
! ACCAGACTCTGCAGCTTTGG+AGG - chr1_3:3000379-3000398 None:intergenic 55.0%
TCCAAAGCTGCAGAGTCTGG+TGG + chr1_3:3000378-3000397 Msa0097190:CDS 55.0%
TCCACCAGACTCTGCAGCTT+TGG - chr1_3:3000382-3000401 None:intergenic 55.0%
GTTGCAATGGGAAGCTCGTG+TGG + chr1_3:3000475-3000494 Msa0097190:CDS 55.0%
TGCACATGCTGCAAAAGGGC+CGG + chr1_3:3000518-3000537 Msa0097190:CDS 55.0%
GACGACTACAGGCCTGTTGA+AGG + chr1_3:3001137-3001156 Msa0097190:CDS 55.0%
CGTCCATGCTTCTTCCATCC+TGG - chr1_3:3001240-3001259 None:intergenic 55.0%
GAGGTTGCGTTCAATGTCCC+TGG + chr1_3:3001266-3001285 Msa0097190:CDS 55.0%
CTGAGCTTCCTCATGGTCAG+AGG + chr1_3:3001351-3001370 Msa0097190:CDS 55.0%
!! TCAGAGGGTAAAGAGCGCTG+CGG + chr1_3:3001367-3001386 Msa0097190:CDS 55.0%
GCCGCCAGACAGGTTAACTG+TGG - chr1_3:2998381-2998400 None:intergenic 60.0%
TGTCAGGACTTCTCCGTCGC+CGG + chr1_3:2998673-2998692 Msa0097190:CDS 60.0%
GTGCACCAAGCCAAGGTGTG+TGG - chr1_3:3000503-3000522 None:intergenic 60.0%
GCAGCATGTGCACCAAGCCA+AGG - chr1_3:3000510-3000529 None:intergenic 60.0%
ATGCTGCAAAAGGGCCGGTG+AGG + chr1_3:3000523-3000542 Msa0097190:CDS 60.0%
TGCGGCTACTGCTGCATACC+AGG + chr1_3:3001385-3001404 Msa0097190:CDS 60.0%
GGAACTGCGCAACTTTGGCC+TGG - chr1_3:3001406-3001425 None:intergenic 60.0%
TCGTGTGGCGCCACACACCT+TGG + chr1_3:3000490-3000509 Msa0097190:CDS 65.0%
TGGCGCCACACACCTTGGCT+TGG + chr1_3:3000495-3000514 Msa0097190:CDS 65.0%
ACCTGAAGCGCGCGTCGAAG+AGG - chr1_3:3000549-3000568 None:intergenic 65.0%
CTCTGCTGGACCTTCGCTCC+TGG - chr1_3:3000979-3000998 None:intergenic 65.0%
GCGCGTCGAAGAGGCCTCAC+CGG - chr1_3:3000540-3000559 None:intergenic 70.0%
GCCTCTTCGACGCGCGCTTC+AGG + chr1_3:3000545-3000564 Msa0097190:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 2998357 3002024 2998357 ID=Msa0097190;Name=Msa0097190
chr1_3 mRNA 2998357 3002024 2998357 ID=Msa0097190-mRNA-1;Parent=Msa0097190;Name=Msa0097190-mRNA-1;_AED=0.02;_eAED=0.02;_QI=210|1|1|1|1|1|3|546|478
chr1_3 exon 2998357 2999031 2998357 ID=Msa0097190-mRNA-1:exon:837;Parent=Msa0097190-mRNA-1
chr1_3 exon 3000219 3000566 3000219 ID=Msa0097190-mRNA-1:exon:838;Parent=Msa0097190-mRNA-1
chr1_3 exon 3000855 3002024 3000855 ID=Msa0097190-mRNA-1:exon:839;Parent=Msa0097190-mRNA-1
chr1_3 five_prime_UTR 2998357 2998566 2998357 ID=Msa0097190-mRNA-1:five_prime_utr;Parent=Msa0097190-mRNA-1
chr1_3 CDS 2998567 2999031 2998567 ID=Msa0097190-mRNA-1:cds;Parent=Msa0097190-mRNA-1
chr1_3 CDS 3000219 3000566 3000219 ID=Msa0097190-mRNA-1:cds;Parent=Msa0097190-mRNA-1
chr1_3 CDS 3000855 3001478 3000855 ID=Msa0097190-mRNA-1:cds;Parent=Msa0097190-mRNA-1
chr1_3 three_prime_UTR 3001479 3002024 3001479 ID=Msa0097190-mRNA-1:three_prime_utr;Parent=Msa0097190-mRNA-1
Gene Sequence

>Msa0097190

ATGGAGCGAAAACAAGGCTTCTTTTCATCCCTTAAAGACGAAGTAGTAAGAGGACTTTCACCGGCGAGGTCACGTGCAAAATCTCCGGCGAGAAGTGCTTCTCCTATGTCAGGACTTCTCCGTCGCCGGAGAAAAAACCAAGGTATTCCGCCGGAGTTGTTTATGACGAGATCGGGAAGTTTAAGACCGGTAGAAGCTTTATCACCGTTGAAAGAAGGTCCTGATGGAACCGACGGTGAAGATGTTGGTAACAGAGGTGAAGGAAAATGGGGTCATTGGATGAAGGGTCAATTAGCTAGAGCACCTTCCGTTTCTTCTTCGAGTTCTTCTTCTTCTTCTTCTTCTTCAGCATCCAAAAAATCTGATCTGAGATTGCTTCTTGGTGTTTTGGGTGCTCCTCTTGCACCTGTTCATGTTTGTACTACTGATCCTTTTCCTCATCTCAGCATCAAAGACATTCCCATTGAAACTTCTTCTGCTCAGTACATATTGCAGCAATACATTGCCTCTTCGGGTGGTTTGAAGATTCAAAATTCAATTAACAATGCTTATGCCATGGGAAAGGTGAGGATGATAGCCTCCGAGTTTGAGACTGCTAACAAAGTCACCCGTAGCCGGAATTCCTCCAAAGCTGCAGAGTCTGGTGGATTTGTCTTGTGGCAGATGAATCCGGATATGTGGTATGTGGAGCTTGCTCTTGGTGGTAGTAAAGTTCATGCTGGTTGCAATGGGAAGCTCGTGTGGCGCCACACACCTTGGCTTGGTGCACATGCTGCAAAAGGGCCGGTGAGGCCTCTTCGACGCGCGCTTCAGGGTCTTGATCCAAGAACTACTGCTAGCATGTTTATCAATGCAAGATGCATTGGGGAGAAGAAGATAAATGAAGAGGATTGTTTCATCCTCAAGCTTTGTGCAGATCCGTCGACATTAAAAGCCAGGAGCGAAGGTCCAGCAGAGATCATAAGGCACGTTTTGTTCGGATACTTTAGTCAGAAAACAGGACTTCTTGTCCATTTGGAAGATTCCCATTTGACCCGCATTCAGAACAATGGAGGCGATGCAGTTTATTGGGAGACCACGATAAATTCATTTCTTGACGACTACAGGCCTGTTGAAGGGATTATGATTGCTCACTCGGGTCGATCTGTAGTGACACTTTTCAGGTTTGGAGAAACAGCAATGAGCCATACTAAAACCAGGATGGAAGAAGCATGGACGATTGAGGAGGTTGCGTTCAATGTCCCTGGCCTTTCCATAGACTGTTTCATTCCTCCATCAGAGCTACGATTTGCTTCTATAAGTGAAGCTTCTGAGCTTCCTCATGGTCAGAGGGTAAAGAGCGCTGCGGCTACTGCTGCATACCAGGCCAAAGTTGCGCAGTTCCAAAAATCACACGAAAGCAATACGAATAACATTAACTGGACAGTGGATGTTTAG
Protein sequence

>Msa0097190

MERKQGFFSSLKDEVVRGLSPARSRAKSPARSASPMSGLLRRRRKNQGIPPELFMTRSGSLRPVEALSPLKEGPDGTDGEDVGNRGEGKWGHWMKGQLARAPSVSSSSSSSSSSSSASKKSDLRLLLGVLGAPLAPVHVCTTDPFPHLSIKDIPIETSSAQYILQQYIASSGGLKIQNSINNAYAMGKVRMIASEFETANKVTRSRNSSKAAESGGFVLWQMNPDMWYVELALGGSKVHAGCNGKLVWRHTPWLGAHAAKGPVRPLRRALQGLDPRTTASMFINARCIGEKKINEEDCFILKLCADPSTLKARSEGPAEIIRHVLFGYFSQKTGLLVHLEDSHLTRIQNNGGDAVYWETTINSFLDDYRPVEGIMIAHSGRSVVTLFRFGETAMSHTKTRMEEAWTIEEVAFNVPGLSIDCFIPPSELRFASISEASELPHGQRVKSAAATAAYQAKVAQFQKSHESNTNNINWTVDV*