AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0968100

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0968100 MtrunA17_Chr1g0152841 97.275 477 6 2 1 477 1 470 0.0 957
Msa0968100 MtrunA17_Chr1g0207581 71.694 484 115 6 1 477 1 469 0.0 702
Msa0968100 MtrunA17_Chr3g0134521 71.111 450 85 4 1 446 1 409 0.0 616
Msa0968100 MtrunA17_Chr2g0309941 55.795 371 151 5 65 427 15 380 2.16e-146 424
Msa0968100 MtrunA17_Chr3g0112781 43.925 428 197 5 49 463 22 419 1.12e-124 370
Msa0968100 MtrunA17_Chr1g0176101 47.802 364 167 5 67 427 4 347 8.86e-113 337
Msa0968100 MtrunA17_Chr5g0436191 43.799 379 195 6 107 471 45 419 4.37e-108 327
Msa0968100 MtrunA17_Chr1g0154851 45.014 351 175 7 82 428 30 366 2.32e-102 311
Msa0968100 MtrunA17_Chr5g0403841 44.478 335 174 4 93 427 53 375 5.29e-98 300
Msa0968100 MtrunA17_Chr3g0141481 42.513 374 200 6 62 426 6 373 1.29e-96 296
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0968100 AT3G19540.1 66.465 495 138 7 1 477 1 485 0.0 634
Msa0968100 AT1G49840.1 61.765 510 146 9 1 477 1 494 0.0 600
Msa0968100 AT1G27690.1 64.901 453 125 9 1 446 1 426 0.0 571
Msa0968100 AT1G79420.1 50.649 385 169 7 63 427 16 399 1.89e-131 387
Msa0968100 AT5G05840.1 53.560 323 137 4 118 428 66 387 1.58e-123 367
Msa0968100 AT5G06610.1 47.467 375 165 9 64 429 1 352 2.56e-110 331
Msa0968100 AT5G66740.1 45.299 351 177 5 82 429 30 368 1.93e-101 308
Msa0968100 AT3G55720.1 43.407 364 182 8 84 427 31 390 9.27e-95 293
Msa0968100 AT1G75160.1 44.543 339 171 7 99 427 60 391 1.71e-92 286

Find 169 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTACTACTTCGTCTTTA+AGG 0.085357 6_3:-98291240 None:intergenic
AATTGTTGTAGCTTTATTTA+AGG 0.136676 6_3:+98294147 Msa0968100:three_prime_UTR
GAGATTGCTTCTTGGTGTTT+TGG 0.193845 6_3:+98291576 Msa0968100:CDS
ATGGAGGCGATGCAGTTTAT+TGG 0.240082 6_3:+98293732 Msa0968100:CDS
GTTGTTGTTGTTAGTTTGTT+TGG 0.253761 6_3:-98291050 None:intergenic
GCCTCTTCGACGCGCGCTTC+AGG 0.284085 6_3:+98293186 Msa0968100:CDS
GCAATACGAATAACATTAAC+TGG 0.307266 6_3:+98294083 Msa0968100:CDS
GTAACAGAGGTGAAGGAAAA+TGG 0.320652 6_3:+98291458 Msa0968100:CDS
TGGTTTCAAGGCACTAATAT+TGG 0.321801 6_3:+98294511 Msa0968100:three_prime_UTR
TCTGATCTGAGATTGCTTCT+TGG 0.323802 6_3:+98291568 Msa0968100:CDS
TCCACCAGACTCTGCAGCTT+TGG 0.331778 6_3:-98293020 None:intergenic
TAAATAAAGCTACAACAATT+AGG 0.332430 6_3:-98294144 None:intergenic
TGTTGTGTTGAAACGGAAAT+TGG 0.334303 6_3:-98291120 None:intergenic
GGTTTGGTGATGGTAATTTC+AGG 0.334470 6_3:+98294532 Msa0968100:three_prime_UTR
CAGCAATACATTGCCTCTTC+GGG 0.342499 6_3:+98292887 Msa0968100:CDS
ATTGTTGTAGCTTTATTTAA+GGG 0.345216 6_3:+98294148 Msa0968100:three_prime_UTR
GCAGCAATACATTGCCTCTT+CGG 0.348152 6_3:+98292886 Msa0968100:CDS
CTGCAGCTTTGGAGGAATTC+CGG 0.351722 6_3:-98293009 None:intergenic
TGTTCTGAATGCGGGTCAAA+TGG 0.358520 6_3:-98293709 None:intergenic
AACAGGACTTCTTGTCCATT+TGG 0.358795 6_3:+98293679 Msa0968100:CDS
ACAGTGGCAAAGTTGTAAAA+TGG 0.359953 6_3:+98291192 Msa0968100:exon
TGGAGGCGATGCAGTTTATT+GGG 0.360194 6_3:+98293733 Msa0968100:CDS
TCTTACTACTTCGTCTTTAA+GGG 0.360832 6_3:-98291239 None:intergenic
AGCTTTATTTAAGGGCCATT+TGG 0.361123 6_3:+98294156 Msa0968100:three_prime_UTR
CTCTGCTGGACCTTCGCTCC+TGG 0.365481 6_3:-98293618 None:intergenic
AACATGCTAGCAGTAGTTCT+TGG 0.366168 6_3:-98293506 None:intergenic
CGTCCATGCTTCTTCCATCC+TGG 0.367626 6_3:-98293879 None:intergenic
TCCTACTTACTCTGGCTACT+TGG 0.372013 6_3:-98294632 None:intergenic
TTGTTGTTGTTAGTTTGTTT+GGG 0.385072 6_3:-98291049 None:intergenic
GATTCCCAATTTCACACTAT+AGG 0.398978 6_3:-98294356 None:intergenic
TCCTCCAAAGCTGCAGAGTC+TGG 0.404172 6_3:+98293016 Msa0968100:CDS
GTGAAGGAAAATGGGGTCAT+TGG 0.407465 6_3:+98291467 Msa0968100:CDS
TGCGGCTACTGCTGCATACC+AGG 0.410924 6_3:+98294027 Msa0968100:CDS
CTTTGGAGGAATTCCGGCTA+CGG 0.421308 6_3:-98293003 None:intergenic
TCAAGGCACTAATATTGGTT+TGG 0.421768 6_3:+98294516 Msa0968100:three_prime_UTR
TTATCAATGCAAGATGCATT+GGG 0.427914 6_3:+98293528 Msa0968100:CDS
ATTCATTTCTTGACGACTAC+AGG 0.428100 6_3:+98293768 Msa0968100:CDS
TGTCTTGTGGCAGATGAATC+CGG 0.434759 6_3:+98293045 Msa0968100:CDS
ACCAGACTCTGCAGCTTTGG+AGG 0.442826 6_3:-98293017 None:intergenic
CTTGGTGCACATGCTGCAAA+AGG 0.443126 6_3:+98293154 Msa0968100:CDS
TGGAGGAATGAAACAGTCTA+TGG 0.445554 6_3:-98293936 None:intergenic
AAGGTCCAGCAGAGATCATA+AGG 0.446893 6_3:+98293627 Msa0968100:CDS
TTTATCAATGCAAGATGCAT+TGG 0.453729 6_3:+98293527 Msa0968100:CDS
TAACAGAGGTGAAGGAAAAT+GGG 0.455369 6_3:+98291459 Msa0968100:CDS
CTTAAAGACGAAGTAGTAAG+AGG 0.465018 6_3:+98291241 Msa0968100:CDS
AGGGATTATGATTGCTCACT+CGG 0.466646 6_3:+98293799 Msa0968100:CDS
GACGACTACAGGCCTGTTGA+AGG 0.466767 6_3:+98293779 Msa0968100:CDS
GCCACTGTGAAGAGAGAGAA+AGG 0.468810 6_3:-98291177 None:intergenic
ACGTGCCTTATGATCTCTGC+TGG 0.469337 6_3:-98293632 None:intergenic
GAGTTGTTTATGACGAGATC+GGG 0.469641 6_3:+98291364 Msa0968100:CDS
AGAAGAACTCGAAGAAGAAA+CGG 0.472026 6_3:-98291518 None:intergenic
ACAAATTACTGCAGGTAAAA+CGG 0.472385 6_3:+98294190 Msa0968100:three_prime_UTR
GGATACTTTAGTCAGAAAAC+AGG 0.478492 6_3:+98293662 Msa0968100:CDS
TCAGTAGTACAAACATGAAC+AGG 0.483324 6_3:-98291613 None:intergenic
TTAAGGGCCATTTGGTTCAC+GGG 0.483782 6_3:+98294164 Msa0968100:three_prime_UTR
AAAGTTCATGCTGGTTGCAA+TGG 0.484470 6_3:+98293103 Msa0968100:CDS
AAAATGATTTCTATTACTCT+AGG 0.486131 6_3:+98294281 Msa0968100:three_prime_UTR
TTGATGCTGAGATGAGGAAA+AGG 0.486272 6_3:-98291637 None:intergenic
TTTAAGGGCCATTTGGTTCA+CGG 0.487658 6_3:+98294163 Msa0968100:three_prime_UTR
TGGTATGTGGAGCTTGCTCT+TGG 0.487663 6_3:+98293073 Msa0968100:CDS
AAAACGGTAAAGATTGCAGC+AGG 0.491939 6_3:+98294206 Msa0968100:three_prime_UTR
GCTTTATCACCGTTGAAAGA+AGG 0.492252 6_3:+98291406 Msa0968100:CDS
GCAATCATAATCCCTTCAAC+AGG 0.492671 6_3:-98293791 None:intergenic
GCCTCCATTGTTCTGAATGC+GGG 0.493956 6_3:-98293717 None:intergenic
TAGTCCACAGTTAACCTGTC+TGG 0.497605 6_3:+98291009 Msa0968100:five_prime_UTR
GAAATGTATTGCCGCCAGAC+AGG 0.497936 6_3:-98291023 None:intergenic
ATTAACAATGCTTATGCCAT+GGG 0.499132 6_3:+98292932 Msa0968100:CDS
AATTAACAATGCTTATGCCA+TGG 0.501037 6_3:+98292931 Msa0968100:CDS
AGCTCCACATACCACATATC+CGG 0.501178 6_3:-98293064 None:intergenic
TATGTGGAGCTTGCTCTTGG+TGG 0.503264 6_3:+98293076 Msa0968100:CDS
AGAAGTGCTTCTCCTATGTC+AGG 0.505134 6_3:+98291301 Msa0968100:CDS
GAAGCAAATCGTAGCTCTGA+TGG 0.505604 6_3:-98293956 None:intergenic
TCTTCACCGTCGGTTCCATC+AGG 0.505819 6_3:-98291430 None:intergenic
ATTAGGCTAATTCAGAAACT+TGG 0.507896 6_3:-98294127 None:intergenic
AAGTTCATGCTGGTTGCAAT+GGG 0.508862 6_3:+98293104 Msa0968100:CDS
GGAACTGCGCAACTTTGGCC+TGG 0.509019 6_3:-98294045 None:intergenic
TCAAATGGGAATCTTCCAAA+TGG 0.509295 6_3:-98293694 None:intergenic
TTTGGAGGAATTCCGGCTAC+GGG 0.510925 6_3:-98293002 None:intergenic
CACTAATATTGGTTTGGTGA+TGG 0.515225 6_3:+98294522 Msa0968100:three_prime_UTR
GAGGTTGCGTTCAATGTCCC+TGG 0.515312 6_3:+98293908 Msa0968100:CDS
GTTCTGAATGCGGGTCAAAT+GGG 0.515684 6_3:-98293708 None:intergenic
TGGCGCCACACACCTTGGCT+TGG 0.515830 6_3:+98293136 Msa0968100:CDS
ATCCGTCGACATTAAAAGCC+AGG 0.517562 6_3:+98293600 Msa0968100:CDS
CGCCTCCATTGTTCTGAATG+CGG 0.518551 6_3:-98293718 None:intergenic
AATTTAGCTCCTACTTACTC+TGG 0.519632 6_3:-98294640 None:intergenic
AAACAGTCTATGGAAAGGCC+AGG 0.521856 6_3:-98293926 None:intergenic
GGAGTTGTTTATGACGAGAT+CGG 0.522536 6_3:+98291363 Msa0968100:CDS
CCATCAGGACCTTCTTTCAA+CGG 0.524176 6_3:-98291415 None:intergenic
AAAATGGGGTCATTGGATGA+AGG 0.524835 6_3:+98291474 Msa0968100:CDS
GAGGTCACGTGCAAAATCTC+CGG 0.526889 6_3:+98291276 Msa0968100:CDS
CTGAGCTTCCTCATGGTCAG+AGG 0.527585 6_3:+98293993 Msa0968100:CDS
TTGTCATCCCGTGAACCAAA+TGG 0.529126 6_3:-98294171 None:intergenic
TTGCTGTTGTTGTGTTGAAA+CGG 0.532958 6_3:-98291127 None:intergenic
ACAACTCCGGCGGAATACCT+TGG 0.535390 6_3:-98291348 None:intergenic
TGTCAGGACTTCTCCGTCGC+CGG 0.539180 6_3:+98291317 Msa0968100:CDS
CAATACATTGCCTCTTCGGG+TGG 0.539607 6_3:+98292890 Msa0968100:CDS
AACGGTGATAAAGCTTCTAC+CGG 0.541189 6_3:-98291397 None:intergenic
TGTAAAATGGAGCGAAAACA+AGG 0.541632 6_3:+98291205 Msa0968100:exon
GCGCGTCGAAGAGGCCTCAC+CGG 0.547654 6_3:-98293178 None:intergenic
ACGACTACAGGCCTGTTGAA+GGG 0.551805 6_3:+98293780 Msa0968100:CDS
CTAGTGATCTTGAAACATCA+TGG 0.556936 6_3:-98294447 None:intergenic
GGAAGAAGCATGGACGATTG+AGG 0.557617 6_3:+98293886 Msa0968100:CDS
GATGTTGGTAACAGAGGTGA+AGG 0.558467 6_3:+98291451 Msa0968100:CDS
TCCAAAGCTGCAGAGTCTGG+TGG 0.559419 6_3:+98293019 Msa0968100:CDS
ACCTGAAGCGCGCGTCGAAG+AGG 0.560247 6_3:-98293187 None:intergenic
AGTCTGGTGGATTTGTCTTG+TGG 0.566455 6_3:+98293032 Msa0968100:CDS
GTGGACGATTATGTACATCA+AGG 0.571251 6_3:+98294310 Msa0968100:three_prime_UTR
AATCTTCAAACCACCCGAAG+AGG 0.574587 6_3:-98292900 None:intergenic
GCAGCATGTGCACCAAGCCA+AGG 0.575022 6_3:-98293148 None:intergenic
ACATTAAAAGCCAGGAGCGA+AGG 0.577670 6_3:+98293608 Msa0968100:CDS
GTTGCAATGGGAAGCTCGTG+TGG 0.578665 6_3:+98293116 Msa0968100:CDS
TTTGTTAGCTGTCTCAAACT+CGG 0.579074 6_3:-98292975 None:intergenic
CCGTTGAAAGAAGGTCCTGA+TGG 0.579878 6_3:+98291415 Msa0968100:CDS
CCCTTTCTCTCTCTTCACAG+TGG 0.580573 6_3:+98291176 Msa0968100:five_prime_UTR
CAATGCTTATGCCATGGGAA+AGG 0.581877 6_3:+98292937 Msa0968100:CDS
GGAGAAGAAGATAAATGAAG+AGG 0.582179 6_3:+98293550 Msa0968100:CDS
ACGGATCTGCACAAAGCTTG+AGG 0.586516 6_3:-98293583 None:intergenic
GGTGGTAGTAAAGTTCATGC+TGG 0.588736 6_3:+98293094 Msa0968100:CDS
CTAACAAAGTCACCCGTAGC+CGG 0.590301 6_3:+98292990 Msa0968100:CDS
TGCACATGCTGCAAAAGGGC+CGG 0.591594 6_3:+98293159 Msa0968100:CDS
TTGACCCGCATTCAGAACAA+TGG 0.592514 6_3:+98293713 Msa0968100:CDS
ATGCTGCAAAAGGGCCGGTG+AGG 0.593168 6_3:+98293164 Msa0968100:CDS
GAAGCTTCTGAGCTTCCTCA+TGG 0.594259 6_3:+98293986 Msa0968100:CDS
GGGATTATGATTGCTCACTC+GGG 0.594647 6_3:+98293800 Msa0968100:CDS
GTTACCAACATCTTCACCGT+CGG 0.597204 6_3:-98291440 None:intergenic
CCACTGTGAAGAGAGAGAAA+GGG 0.600459 6_3:-98291176 None:intergenic
ATAGGAGAAGCACTTCTCGC+CGG 0.601989 6_3:-98291295 None:intergenic
CAAACATGAACAGGTGCAAG+AGG 0.602523 6_3:-98291604 None:intergenic
CGACGGAGAAGTCCTGACAT+AGG 0.603265 6_3:-98291313 None:intergenic
ACGGGATGACAAATTACTGC+AGG 0.605013 6_3:+98294182 Msa0968100:three_prime_UTR
TCGTGTGGCGCCACACACCT+TGG 0.605281 6_3:+98293131 Msa0968100:CDS
TGAGCTTCCTCATGGTCAGA+GGG 0.606171 6_3:+98293994 Msa0968100:CDS
TTGGTGCACATGCTGCAAAA+GGG 0.607369 6_3:+98293155 Msa0968100:CDS
GAGCCATACTAAAACCAGGA+TGG 0.613270 6_3:+98293865 Msa0968100:CDS
ACCAAGTAGCCAGAGTAAGT+AGG 0.615354 6_3:+98294631 Msa0968100:three_prime_UTR
AAACCAGGATGGAAGAAGCA+TGG 0.615435 6_3:+98293876 Msa0968100:CDS
AAATGGGGTCATTGGATGAA+GGG 0.616766 6_3:+98291475 Msa0968100:CDS
GTGCACCAAGCCAAGGTGTG+TGG 0.620387 6_3:-98293141 None:intergenic
CTCTTTACCCTCTGACCATG+AGG 0.622184 6_3:-98294001 None:intergenic
TATCATCCTCACCTTTCCCA+TGG 0.623660 6_3:-98292948 None:intergenic
GAAGGTCCTGATGGAACCGA+CGG 0.626057 6_3:+98291424 Msa0968100:CDS
ACCCGCATTCAGAACAATGG+AGG 0.627450 6_3:+98293716 Msa0968100:CDS
AACAGTCTATGGAAAGGCCA+GGG 0.628998 6_3:-98293925 None:intergenic
GGCAGATGAATCCGGATATG+TGG 0.630821 6_3:+98293053 Msa0968100:CDS
CAATGAGCCATACTAAAACC+AGG 0.631927 6_3:+98293861 Msa0968100:CDS
GAATGAAACAGTCTATGGAA+AGG 0.638202 6_3:-98293931 None:intergenic
GAATCCGGATATGTGGTATG+TGG 0.641508 6_3:+98293060 Msa0968100:CDS
TCACACTATAGGAAAAGATG+TGG 0.643030 6_3:-98294345 None:intergenic
GGTGAAGATGTTGGTAACAG+AGG 0.650817 6_3:+98291445 Msa0968100:CDS
TATCAATGCAAGATGCATTG+GGG 0.653185 6_3:+98293529 Msa0968100:CDS
GTCAAGAAATGAATTTATCG+TGG 0.654911 6_3:-98293759 None:intergenic
AGTAGTAAGAGGACTTTCAC+CGG 0.655141 6_3:+98291252 Msa0968100:CDS
GAGATCGGGAAGTTTAAGAC+CGG 0.655639 6_3:+98291378 Msa0968100:CDS
AGAAGCATGGACGATTGAGG+AGG 0.662743 6_3:+98293889 Msa0968100:CDS
GATCTCGTCATAAACAACTC+CGG 0.670627 6_3:-98291361 None:intergenic
ATGTCTTTGATGCTGAGATG+AGG 0.670912 6_3:-98291643 None:intergenic
AACAGAGGTGAAGGAAAATG+GGG 0.671749 6_3:+98291460 Msa0968100:CDS
TCCACAGTTAACCTGTCTGG+CGG 0.672871 6_3:+98291012 Msa0968100:five_prime_UTR
TAAGAGGACTTTCACCGGCG+AGG 0.673982 6_3:+98291257 Msa0968100:CDS
GAACTCGAAGAAGAAACGGA+AGG 0.676634 6_3:-98291514 None:intergenic
GAATAACATTAACTGGACAG+TGG 0.679369 6_3:+98294090 Msa0968100:CDS
GCAAATCGTAGCTCTGATGG+AGG 0.679907 6_3:-98293953 None:intergenic
GGAACCGACGGTGAAGATGT+TGG 0.691934 6_3:+98291436 Msa0968100:CDS
GTTAGCTGTCTCAAACTCGG+AGG 0.708105 6_3:-98292972 None:intergenic
GCCGCCAGACAGGTTAACTG+TGG 0.712330 6_3:-98291013 None:intergenic
CTCGTCATAAACAACTCCGG+CGG 0.713466 6_3:-98291358 None:intergenic
AAACGGTAAAGATTGCAGCA+GGG 0.753590 6_3:+98294207 Msa0968100:three_prime_UTR
TCAGAGGGTAAAGAGCGCTG+CGG 0.765849 6_3:+98294009 Msa0968100:CDS
CTTATGCCATGGGAAAGGTG+AGG 0.780728 6_3:+98292942 Msa0968100:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAATTAATTTTAACATGTTT+GGG - chr6_3:98292475-98292494 None:intergenic 15.0%
!!! ACAATTAATTTTAACATGTT+TGG - chr6_3:98292476-98292495 None:intergenic 15.0%
!! GTTATGTTTGAAAATCTAAT+AGG + chr6_3:98292030-98292049 Msa0968100:intron 20.0%
!! AGAACAAAAAAAACAGAAAA+AGG - chr6_3:98292097-98292116 None:intergenic 20.0%
!! TTATGAATGATAAGAAGAAA+AGG - chr6_3:98293291-98293310 None:intergenic 20.0%
!!! ATTTCTGTTATAGTTTGTTA+AGG + chr6_3:98293320-98293339 Msa0968100:intron 20.0%
!!! TTTCTGTTATAGTTTGTTAA+GGG + chr6_3:98293321-98293340 Msa0968100:intron 20.0%
!! TAAATAAAGCTACAACAATT+AGG - chr6_3:98294147-98294166 None:intergenic 20.0%
!!! AATTGTTGTAGCTTTATTTA+AGG + chr6_3:98294147-98294166 Msa0968100:three_prime_UTR 20.0%
!!! ATTGTTGTAGCTTTATTTAA+GGG + chr6_3:98294148-98294167 Msa0968100:three_prime_UTR 20.0%
!! AAAATGATTTCTATTACTCT+AGG + chr6_3:98294281-98294300 Msa0968100:three_prime_UTR 20.0%
!!! TTGTTGTTGTTAGTTTGTTT+GGG - chr6_3:98291052-98291071 None:intergenic 25.0%
! GAGATAGAAAAACTAACAAT+GGG - chr6_3:98291670-98291689 None:intergenic 25.0%
! AGAGATAGAAAAACTAACAA+TGG - chr6_3:98291671-98291690 None:intergenic 25.0%
!! ATCAATTGATTTAGCTTAAG+TGG - chr6_3:98291971-98291990 None:intergenic 25.0%
! GAAAATCTAATAGGCTAATT+AGG + chr6_3:98292039-98292058 Msa0968100:intron 25.0%
!!! TTTTTGTTCTGTGTTTTGAT+TGG + chr6_3:98292107-98292126 Msa0968100:intron 25.0%
! GATGTGATTTATGTTTAGAA+AGG + chr6_3:98292326-98292345 Msa0968100:intron 25.0%
! TTGTATTCGTGTTTAATACA+TGG + chr6_3:98292492-98292511 Msa0968100:intron 25.0%
!!! AGTTACTTTTGATGCTATAA+TGG + chr6_3:98292765-98292784 Msa0968100:intron 25.0%
!! AGAGGCATATATGTTAATTT+AGG - chr6_3:98293237-98293256 None:intergenic 25.0%
! ACTACTTATCTAATAACAAG+AGG - chr6_3:98293255-98293274 None:intergenic 25.0%
!!! TATAGTTTGTTAAGGGATAT+TGG + chr6_3:98293328-98293347 Msa0968100:intron 25.0%
!!! ATAGTTTGTTAAGGGATATT+GGG + chr6_3:98293329-98293348 Msa0968100:intron 25.0%
! CAAGTCTAAATTGATAAACA+TGG - chr6_3:98293443-98293462 None:intergenic 25.0%
!!! TTAGACTTGTTTCTATGTAT+AGG + chr6_3:98293475-98293494 Msa0968100:intron 25.0%
!!! TAGACTTGTTTCTATGTATA+GGG + chr6_3:98293476-98293495 Msa0968100:intron 25.0%
!! TTTCTATTACTCTAGGTTTT+TGG + chr6_3:98294288-98294307 Msa0968100:three_prime_UTR 25.0%
!! TTTTCCTATAGTGTGAAATT+GGG + chr6_3:98294352-98294371 Msa0968100:three_prime_UTR 25.0%
!!! TTCAACAGTTTTATCAAAGA+TGG - chr6_3:98294566-98294585 None:intergenic 25.0%
!! GTTGTTGTTGTTAGTTTGTT+TGG - chr6_3:98291053-98291072 None:intergenic 30.0%
TCTTACTACTTCGTCTTTAA+GGG - chr6_3:98291242-98291261 None:intergenic 30.0%
!!! CAATCTCAGATCAGATTTTT+TGG - chr6_3:98291563-98291582 None:intergenic 30.0%
!!! TTTTTTTCCTGTTAATCCTC+CGG + chr6_3:98291702-98291721 Msa0968100:intron 30.0%
! TTGTTTATATTTGAGACCAG+AGG + chr6_3:98291850-98291869 Msa0968100:intron 30.0%
! TGTTTATATTTGAGACCAGA+GGG + chr6_3:98291851-98291870 Msa0968100:intron 30.0%
CTAATTAGGTGAAACATCAT+AGG + chr6_3:98292053-98292072 Msa0968100:intron 30.0%
!!! GTTTTGACTTTTGAGTAACT+TGG + chr6_3:98292149-98292168 Msa0968100:intron 30.0%
TTGAGTGTGAAAATCATGTT+TGG + chr6_3:98292378-98292397 Msa0968100:intron 30.0%
GTTAATTCTAACTTGAAGCT+AGG - chr6_3:98292420-98292439 None:intergenic 30.0%
CAAGTTAGAATTAACTCTGT+AGG + chr6_3:98292425-98292444 Msa0968100:intron 30.0%
ATGGTCTATTGGATGATATT+CGG + chr6_3:98292685-98292704 Msa0968100:intron 30.0%
! GGTTTCTCTTTTTCTACATT+TGG + chr6_3:98292786-98292805 Msa0968100:intron 30.0%
!! ATATAATTTGCTGTTGTTGC+AGG + chr6_3:98292838-98292857 Msa0968100:intron 30.0%
AATTAACAATGCTTATGCCA+TGG + chr6_3:98292931-98292950 Msa0968100:CDS 30.0%
ATTAACAATGCTTATGCCAT+GGG + chr6_3:98292932-98292951 Msa0968100:CDS 30.0%
TTTATCAATGCAAGATGCAT+TGG + chr6_3:98293527-98293546 Msa0968100:CDS 30.0%
TTATCAATGCAAGATGCATT+GGG + chr6_3:98293528-98293547 Msa0968100:CDS 30.0%
GTCAAGAAATGAATTTATCG+TGG - chr6_3:98293762-98293781 None:intergenic 30.0%
! TATTGCTTTCGTGTGATTTT+TGG - chr6_3:98294069-98294088 None:intergenic 30.0%
GCAATACGAATAACATTAAC+TGG + chr6_3:98294083-98294102 Msa0968100:CDS 30.0%
ATTAGGCTAATTCAGAAACT+TGG - chr6_3:98294130-98294149 None:intergenic 30.0%
ACAAATTACTGCAGGTAAAA+CGG + chr6_3:98294190-98294209 Msa0968100:three_prime_UTR 30.0%
! CTTTTCCTATAGTGTGAAAT+TGG + chr6_3:98294351-98294370 Msa0968100:three_prime_UTR 30.0%
! TTTTCGTTGCTGGAAAATTT+TGG + chr6_3:98294485-98294504 Msa0968100:three_prime_UTR 30.0%
!!! AAATTTTGGCTTTGGTTTCA+AGG + chr6_3:98294499-98294518 Msa0968100:three_prime_UTR 30.0%
TGTTGTGTTGAAACGGAAAT+TGG - chr6_3:98291123-98291142 None:intergenic 35.0%
! TTGCTGTTGTTGTGTTGAAA+CGG - chr6_3:98291130-98291149 None:intergenic 35.0%
ACAGTGGCAAAGTTGTAAAA+TGG + chr6_3:98291192-98291211 Msa0968100:exon 35.0%
TGTAAAATGGAGCGAAAACA+AGG + chr6_3:98291205-98291224 Msa0968100:exon 35.0%
CTCTTACTACTTCGTCTTTA+AGG - chr6_3:98291243-98291262 None:intergenic 35.0%
CTTAAAGACGAAGTAGTAAG+AGG + chr6_3:98291241-98291260 Msa0968100:CDS 35.0%
!!! GAATACCTTGGTTTTTTCTC+CGG - chr6_3:98291339-98291358 None:intergenic 35.0%
TAACAGAGGTGAAGGAAAAT+GGG + chr6_3:98291459-98291478 Msa0968100:CDS 35.0%
AGAAGAACTCGAAGAAGAAA+CGG - chr6_3:98291521-98291540 None:intergenic 35.0%
!!! AGATTGCTTCTTGGTGTTTT+GGG + chr6_3:98291577-98291596 Msa0968100:CDS 35.0%
TCAGTAGTACAAACATGAAC+AGG - chr6_3:98291616-98291635 None:intergenic 35.0%
ATAACAGATTCCCTGATAAC+CGG - chr6_3:98291724-98291743 None:intergenic 35.0%
TCAACACATTAATCGAACTC+AGG + chr6_3:98291901-98291920 Msa0968100:intron 35.0%
ATTAATCGAACTCAGGTTCT+CGG + chr6_3:98291908-98291927 Msa0968100:intron 35.0%
! ATTGGTAGCTAGGAAATTGA+TGG + chr6_3:98292125-98292144 Msa0968100:intron 35.0%
! TTGGTAGCTAGGAAATTGAT+GGG + chr6_3:98292126-98292145 Msa0968100:intron 35.0%
TGCTATACTATGTGTGTGTT+TGG + chr6_3:98292231-98292250 Msa0968100:intron 35.0%
TGAAGCTAGGATTATAGCTT+TGG - chr6_3:98292407-98292426 None:intergenic 35.0%
CGTGTTTAATACATGGTTTG+TGG + chr6_3:98292499-98292518 Msa0968100:intron 35.0%
TTAGATTAATCCAACAACCG+AGG - chr6_3:98292564-98292583 None:intergenic 35.0%
TGGTCTATTGGATGATATTC+GGG + chr6_3:98292686-98292705 Msa0968100:intron 35.0%
AGTAATGCAATGTAGTGTTG+TGG + chr6_3:98292813-98292832 Msa0968100:intron 35.0%
TTTGTTAGCTGTCTCAAACT+CGG - chr6_3:98292978-98292997 None:intergenic 35.0%
TATCAATGCAAGATGCATTG+GGG + chr6_3:98293529-98293548 Msa0968100:CDS 35.0%
GGAGAAGAAGATAAATGAAG+AGG + chr6_3:98293550-98293569 Msa0968100:CDS 35.0%
!! ATCATAAGGCACGTTTTGTT+CGG + chr6_3:98293641-98293660 Msa0968100:CDS 35.0%
GGATACTTTAGTCAGAAAAC+AGG + chr6_3:98293662-98293681 Msa0968100:CDS 35.0%
TCAAATGGGAATCTTCCAAA+TGG - chr6_3:98293697-98293716 None:intergenic 35.0%
ATTCATTTCTTGACGACTAC+AGG + chr6_3:98293768-98293787 Msa0968100:CDS 35.0%
GAATGAAACAGTCTATGGAA+AGG - chr6_3:98293934-98293953 None:intergenic 35.0%
GAATAACATTAACTGGACAG+TGG + chr6_3:98294090-98294109 Msa0968100:CDS 35.0%
!! AGCTTTATTTAAGGGCCATT+TGG + chr6_3:98294156-98294175 Msa0968100:three_prime_UTR 35.0%
!! CTATTACTCTAGGTTTTTGG+TGG + chr6_3:98294291-98294310 Msa0968100:three_prime_UTR 35.0%
TCACACTATAGGAAAAGATG+TGG - chr6_3:98294348-98294367 None:intergenic 35.0%
GATTCCCAATTTCACACTAT+AGG - chr6_3:98294359-98294378 None:intergenic 35.0%
CTAGTGATCTTGAAACATCA+TGG - chr6_3:98294450-98294469 None:intergenic 35.0%
!! TATAACCTAGTTTTCGTTGC+TGG + chr6_3:98294475-98294494 Msa0968100:three_prime_UTR 35.0%
! ATTTTCCAGCAACGAAAACT+AGG - chr6_3:98294483-98294502 None:intergenic 35.0%
!!! TTGCTGGAAAATTTTGGCTT+TGG + chr6_3:98294491-98294510 Msa0968100:three_prime_UTR 35.0%
! TGGTTTCAAGGCACTAATAT+TGG + chr6_3:98294511-98294530 Msa0968100:three_prime_UTR 35.0%
! TCAAGGCACTAATATTGGTT+TGG + chr6_3:98294516-98294535 Msa0968100:three_prime_UTR 35.0%
!! CACTAATATTGGTTTGGTGA+TGG + chr6_3:98294522-98294541 Msa0968100:three_prime_UTR 35.0%
! AATTTAGCTCCTACTTACTC+TGG - chr6_3:98294643-98294662 None:intergenic 35.0%
AGTAGTAAGAGGACTTTCAC+CGG + chr6_3:98291252-98291271 Msa0968100:CDS 40.0%
! AAAAAACCAAGGTATTCCGC+CGG + chr6_3:98291342-98291361 Msa0968100:CDS 40.0%
GATCTCGTCATAAACAACTC+CGG - chr6_3:98291364-98291383 None:intergenic 40.0%
GGAGTTGTTTATGACGAGAT+CGG + chr6_3:98291363-98291382 Msa0968100:CDS 40.0%
GAGTTGTTTATGACGAGATC+GGG + chr6_3:98291364-98291383 Msa0968100:CDS 40.0%
AACGGTGATAAAGCTTCTAC+CGG - chr6_3:98291400-98291419 None:intergenic 40.0%
GCTTTATCACCGTTGAAAGA+AGG + chr6_3:98291406-98291425 Msa0968100:CDS 40.0%
GTAACAGAGGTGAAGGAAAA+TGG + chr6_3:98291458-98291477 Msa0968100:CDS 40.0%
AACAGAGGTGAAGGAAAATG+GGG + chr6_3:98291460-98291479 Msa0968100:CDS 40.0%
AAAATGGGGTCATTGGATGA+AGG + chr6_3:98291474-98291493 Msa0968100:CDS 40.0%
AAATGGGGTCATTGGATGAA+GGG + chr6_3:98291475-98291494 Msa0968100:CDS 40.0%
! TCTGATCTGAGATTGCTTCT+TGG + chr6_3:98291568-98291587 Msa0968100:CDS 40.0%
!!! GAGATTGCTTCTTGGTGTTT+TGG + chr6_3:98291576-98291595 Msa0968100:CDS 40.0%
TTGATGCTGAGATGAGGAAA+AGG - chr6_3:98291640-98291659 None:intergenic 40.0%
ATGTCTTTGATGCTGAGATG+AGG - chr6_3:98291646-98291665 None:intergenic 40.0%
TGTTAATCCTCCGGTTATCA+GGG + chr6_3:98291711-98291730 Msa0968100:intron 40.0%
TCAGGGAATCTGTTATTCTC+TGG + chr6_3:98291728-98291747 Msa0968100:intron 40.0%
TTAATCGAACTCAGGTTCTC+GGG + chr6_3:98291909-98291928 Msa0968100:intron 40.0%
TCTCGAATGATTCGTGCTAA+GGG + chr6_3:98291935-98291954 Msa0968100:intron 40.0%
!!! CTGTGTTTTGATTGGTAGCT+AGG + chr6_3:98292115-98292134 Msa0968100:intron 40.0%
TGGTAGCTAGGAAATTGATG+GGG + chr6_3:98292127-98292146 Msa0968100:intron 40.0%
TTGAGTAACTTGGCAAGACT+AGG + chr6_3:98292159-98292178 Msa0968100:intron 40.0%
! ACTATGTGTGTGTTTGGTTC+TGG + chr6_3:98292237-98292256 Msa0968100:intron 40.0%
TTAATCCAACAACCGAGGTT+TGG - chr6_3:98292559-98292578 None:intergenic 40.0%
AACAGCCAAGATATACACGT+TGG + chr6_3:98292582-98292601 Msa0968100:intron 40.0%
ACAGCCAAGATATACACGTT+GGG + chr6_3:98292583-98292602 Msa0968100:intron 40.0%
CAGTATCTCCAGCCAAATTT+CGG - chr6_3:98292635-98292654 None:intergenic 40.0%
ATACTGCAAAGGATCCAAGT+TGG + chr6_3:98292649-98292668 Msa0968100:intron 40.0%
TACTGCAAAGGATCCAAGTT+GGG + chr6_3:98292650-98292669 Msa0968100:intron 40.0%
TTTGTGCTCTCATGGTCTAT+TGG + chr6_3:98292674-98292693 Msa0968100:intron 40.0%
! AAAGTTCATGCTGGTTGCAA+TGG + chr6_3:98293103-98293122 Msa0968100:CDS 40.0%
! AAGTTCATGCTGGTTGCAAT+GGG + chr6_3:98293104-98293123 Msa0968100:CDS 40.0%
ACATGGTAGCAGTTGTTCTT+GGG - chr6_3:98293426-98293445 None:intergenic 40.0%
AACATGGTAGCAGTTGTTCT+TGG - chr6_3:98293427-98293446 None:intergenic 40.0%
AACATGCTAGCAGTAGTTCT+TGG - chr6_3:98293509-98293528 None:intergenic 40.0%
AACAGGACTTCTTGTCCATT+TGG + chr6_3:98293679-98293698 Msa0968100:CDS 40.0%
GCAATCATAATCCCTTCAAC+AGG - chr6_3:98293794-98293813 None:intergenic 40.0%
AGGGATTATGATTGCTCACT+CGG + chr6_3:98293799-98293818 Msa0968100:CDS 40.0%
! GATCTGTAGTGACACTTTTC+AGG + chr6_3:98293825-98293844 Msa0968100:CDS 40.0%
!!! GTAGTGACACTTTTCAGGTT+TGG + chr6_3:98293830-98293849 Msa0968100:CDS 40.0%
CAATGAGCCATACTAAAACC+AGG + chr6_3:98293861-98293880 Msa0968100:CDS 40.0%
!!! CTTCCATCCTGGTTTTAGTA+TGG - chr6_3:98293871-98293890 None:intergenic 40.0%
TGGAGGAATGAAACAGTCTA+TGG - chr6_3:98293939-98293958 None:intergenic 40.0%
!!! TTTTTGGAACTGCGCAACTT+TGG - chr6_3:98294053-98294072 None:intergenic 40.0%
! TTTAAGGGCCATTTGGTTCA+CGG + chr6_3:98294163-98294182 Msa0968100:three_prime_UTR 40.0%
AAAACGGTAAAGATTGCAGC+AGG + chr6_3:98294206-98294225 Msa0968100:three_prime_UTR 40.0%
AAACGGTAAAGATTGCAGCA+GGG + chr6_3:98294207-98294226 Msa0968100:three_prime_UTR 40.0%
GTGGACGATTATGTACATCA+AGG + chr6_3:98294310-98294329 Msa0968100:three_prime_UTR 40.0%
!! GGTTTGGTGATGGTAATTTC+AGG + chr6_3:98294532-98294551 Msa0968100:three_prime_UTR 40.0%
TAGTCCACAGTTAACCTGTC+TGG + chr6_3:98291009-98291028 Msa0968100:five_prime_UTR 45.0%
CCACTGTGAAGAGAGAGAAA+GGG - chr6_3:98291179-98291198 None:intergenic 45.0%
!! AGAAGTGCTTCTCCTATGTC+AGG + chr6_3:98291301-98291320 Msa0968100:CDS 45.0%
! GAGATCGGGAAGTTTAAGAC+CGG + chr6_3:98291378-98291397 Msa0968100:CDS 45.0%
CCATCAGGACCTTCTTTCAA+CGG - chr6_3:98291418-98291437 None:intergenic 45.0%
GTTACCAACATCTTCACCGT+CGG - chr6_3:98291443-98291462 None:intergenic 45.0%
!! GGTGAAGATGTTGGTAACAG+AGG + chr6_3:98291445-98291464 Msa0968100:CDS 45.0%
!! GATGTTGGTAACAGAGGTGA+AGG + chr6_3:98291451-98291470 Msa0968100:CDS 45.0%
GTGAAGGAAAATGGGGTCAT+TGG + chr6_3:98291467-98291486 Msa0968100:CDS 45.0%
GAACTCGAAGAAGAAACGGA+AGG - chr6_3:98291517-98291536 None:intergenic 45.0%
CAAACATGAACAGGTGCAAG+AGG - chr6_3:98291607-98291626 None:intergenic 45.0%
CTGATAACCGGAGGATTAAC+AGG - chr6_3:98291712-98291731 None:intergenic 45.0%
CTGTTAATCCTCCGGTTATC+AGG + chr6_3:98291710-98291729 Msa0968100:intron 45.0%
CAAGCTTTCATAACTCCCTC+TGG - chr6_3:98291869-98291888 None:intergenic 45.0%
GTCTCGAATGATTCGTGCTA+AGG + chr6_3:98291934-98291953 Msa0968100:intron 45.0%
GTATCTTGTCAGCCAAACCT+CGG + chr6_3:98292544-98292563 Msa0968100:intron 45.0%
ACGACCCAACGTGTATATCT+TGG - chr6_3:98292590-98292609 None:intergenic 45.0%
! CAAATTTCGGTATCGGGAGT+TGG - chr6_3:98292622-98292641 None:intergenic 45.0%
CAACTCCCGATACCGAAATT+TGG + chr6_3:98292620-98292639 Msa0968100:intron 45.0%
TCCAGCCAAATTTCGGTATC+GGG - chr6_3:98292628-98292647 None:intergenic 45.0%
CTCCAGCCAAATTTCGGTAT+CGG - chr6_3:98292629-98292648 None:intergenic 45.0%
TTTGGCTGGAGATACTGCAA+AGG + chr6_3:98292638-98292657 Msa0968100:intron 45.0%
! TGAGAGCACAAAACCCAACT+TGG - chr6_3:98292666-98292685 None:intergenic 45.0%
!! AGTTGGGTTTTGTGCTCTCA+TGG + chr6_3:98292666-98292685 Msa0968100:intron 45.0%
TGTGCAGGAGAGATAGAACT+GGG + chr6_3:98292711-98292730 Msa0968100:intron 45.0%
GCAGCAATACATTGCCTCTT+CGG + chr6_3:98292886-98292905 Msa0968100:CDS 45.0%
CAGCAATACATTGCCTCTTC+GGG + chr6_3:98292887-98292906 Msa0968100:CDS 45.0%
AATCTTCAAACCACCCGAAG+AGG - chr6_3:98292903-98292922 None:intergenic 45.0%
CAATGCTTATGCCATGGGAA+AGG + chr6_3:98292937-98292956 Msa0968100:CDS 45.0%
TATCATCCTCACCTTTCCCA+TGG - chr6_3:98292951-98292970 None:intergenic 45.0%
!! AGTCTGGTGGATTTGTCTTG+TGG + chr6_3:98293032-98293051 Msa0968100:CDS 45.0%
TGTCTTGTGGCAGATGAATC+CGG + chr6_3:98293045-98293064 Msa0968100:CDS 45.0%
GAATCCGGATATGTGGTATG+TGG + chr6_3:98293060-98293079 Msa0968100:CDS 45.0%
AGCTCCACATACCACATATC+CGG - chr6_3:98293067-98293086 None:intergenic 45.0%
GGTGGTAGTAAAGTTCATGC+TGG + chr6_3:98293094-98293113 Msa0968100:CDS 45.0%
TTGGTGCACATGCTGCAAAA+GGG + chr6_3:98293155-98293174 Msa0968100:CDS 45.0%
ATCCGTCGACATTAAAAGCC+AGG + chr6_3:98293600-98293619 Msa0968100:CDS 45.0%
!! CTCCTGGCTTTTAATGTCGA+CGG - chr6_3:98293605-98293624 None:intergenic 45.0%
ACATTAAAAGCCAGGAGCGA+AGG + chr6_3:98293608-98293627 Msa0968100:CDS 45.0%
AAGGTCCAGCAGAGATCATA+AGG + chr6_3:98293627-98293646 Msa0968100:CDS 45.0%
! GTTCTGAATGCGGGTCAAAT+GGG - chr6_3:98293711-98293730 None:intergenic 45.0%
! TGTTCTGAATGCGGGTCAAA+TGG - chr6_3:98293712-98293731 None:intergenic 45.0%
TTGACCCGCATTCAGAACAA+TGG + chr6_3:98293713-98293732 Msa0968100:CDS 45.0%
ATGGAGGCGATGCAGTTTAT+TGG + chr6_3:98293732-98293751 Msa0968100:CDS 45.0%
TGGAGGCGATGCAGTTTATT+GGG + chr6_3:98293733-98293752 Msa0968100:CDS 45.0%
GGGATTATGATTGCTCACTC+GGG + chr6_3:98293800-98293819 Msa0968100:CDS 45.0%
GAGCCATACTAAAACCAGGA+TGG + chr6_3:98293865-98293884 Msa0968100:CDS 45.0%
AAACCAGGATGGAAGAAGCA+TGG + chr6_3:98293876-98293895 Msa0968100:CDS 45.0%
AACAGTCTATGGAAAGGCCA+GGG - chr6_3:98293928-98293947 None:intergenic 45.0%
AAACAGTCTATGGAAAGGCC+AGG - chr6_3:98293929-98293948 None:intergenic 45.0%
!! GAAGCAAATCGTAGCTCTGA+TGG - chr6_3:98293959-98293978 None:intergenic 45.0%
! TTAAGGGCCATTTGGTTCAC+GGG + chr6_3:98294164-98294183 Msa0968100:three_prime_UTR 45.0%
TTGTCATCCCGTGAACCAAA+TGG - chr6_3:98294174-98294193 None:intergenic 45.0%
ACGGGATGACAAATTACTGC+AGG + chr6_3:98294182-98294201 Msa0968100:three_prime_UTR 45.0%
ACCAAGTAGCCAGAGTAAGT+AGG + chr6_3:98294631-98294650 Msa0968100:three_prime_UTR 45.0%
TCCTACTTACTCTGGCTACT+TGG - chr6_3:98294635-98294654 None:intergenic 45.0%
TCCACAGTTAACCTGTCTGG+CGG + chr6_3:98291012-98291031 Msa0968100:five_prime_UTR 50.0%
GAAATGTATTGCCGCCAGAC+AGG - chr6_3:98291026-98291045 None:intergenic 50.0%
CCCTTTCTCTCTCTTCACAG+TGG + chr6_3:98291176-98291195 Msa0968100:five_prime_UTR 50.0%
GCCACTGTGAAGAGAGAGAA+AGG - chr6_3:98291180-98291199 None:intergenic 50.0%
GAGGTCACGTGCAAAATCTC+CGG + chr6_3:98291276-98291295 Msa0968100:CDS 50.0%
!! ATAGGAGAAGCACTTCTCGC+CGG - chr6_3:98291298-98291317 None:intergenic 50.0%
!!! CTTGGTTTTTTCTCCGGCGA+CGG - chr6_3:98291333-98291352 None:intergenic 50.0%
CTCGTCATAAACAACTCCGG+CGG - chr6_3:98291361-98291380 None:intergenic 50.0%
CCGTTGAAAGAAGGTCCTGA+TGG + chr6_3:98291415-98291434 Msa0968100:CDS 50.0%
ACAGATTCCCTGATAACCGG+AGG - chr6_3:98291721-98291740 None:intergenic 50.0%
TCCCGATACCGAAATTTGGC+TGG + chr6_3:98292624-98292643 Msa0968100:intron 50.0%
GATGATATTCGGGTGTGTGC+AGG + chr6_3:98292696-98292715 Msa0968100:intron 50.0%
GTGTGCAGGAGAGATAGAAC+TGG + chr6_3:98292710-98292729 Msa0968100:intron 50.0%
GTGCAGGAGAGATAGAACTG+GGG + chr6_3:98292712-98292731 Msa0968100:intron 50.0%
AGGAGAGATAGAACTGGGGA+GGG + chr6_3:98292716-98292735 Msa0968100:intron 50.0%
GGAGGGGAAAGAGGGATATT+GGG + chr6_3:98292733-98292752 Msa0968100:intron 50.0%
CAATACATTGCCTCTTCGGG+TGG + chr6_3:98292890-98292909 Msa0968100:CDS 50.0%
CTTATGCCATGGGAAAGGTG+AGG + chr6_3:98292942-98292961 Msa0968100:CDS 50.0%
GTTAGCTGTCTCAAACTCGG+AGG - chr6_3:98292975-98292994 None:intergenic 50.0%
CTAACAAAGTCACCCGTAGC+CGG + chr6_3:98292990-98293009 Msa0968100:CDS 50.0%
TTTGGAGGAATTCCGGCTAC+GGG - chr6_3:98293005-98293024 None:intergenic 50.0%
! CTTTGGAGGAATTCCGGCTA+CGG - chr6_3:98293006-98293025 None:intergenic 50.0%
!! CTGCAGCTTTGGAGGAATTC+CGG - chr6_3:98293012-98293031 None:intergenic 50.0%
GGCAGATGAATCCGGATATG+TGG + chr6_3:98293053-98293072 Msa0968100:CDS 50.0%
! TGGTATGTGGAGCTTGCTCT+TGG + chr6_3:98293073-98293092 Msa0968100:CDS 50.0%
! TATGTGGAGCTTGCTCTTGG+TGG + chr6_3:98293076-98293095 Msa0968100:CDS 50.0%
! CTTGGTGCACATGCTGCAAA+AGG + chr6_3:98293154-98293173 Msa0968100:CDS 50.0%
ACGGATCTGCACAAAGCTTG+AGG - chr6_3:98293586-98293605 None:intergenic 50.0%
ACGTGCCTTATGATCTCTGC+TGG - chr6_3:98293635-98293654 None:intergenic 50.0%
ACCCGCATTCAGAACAATGG+AGG + chr6_3:98293716-98293735 Msa0968100:CDS 50.0%
! GCCTCCATTGTTCTGAATGC+GGG - chr6_3:98293720-98293739 None:intergenic 50.0%
! CGCCTCCATTGTTCTGAATG+CGG - chr6_3:98293721-98293740 None:intergenic 50.0%
ACGACTACAGGCCTGTTGAA+GGG + chr6_3:98293780-98293799 Msa0968100:CDS 50.0%
! GGAAGAAGCATGGACGATTG+AGG + chr6_3:98293886-98293905 Msa0968100:CDS 50.0%
! AGAAGCATGGACGATTGAGG+AGG + chr6_3:98293889-98293908 Msa0968100:CDS 50.0%
!! GCAAATCGTAGCTCTGATGG+AGG - chr6_3:98293956-98293975 None:intergenic 50.0%
GAAGCTTCTGAGCTTCCTCA+TGG + chr6_3:98293986-98294005 Msa0968100:CDS 50.0%
TGAGCTTCCTCATGGTCAGA+GGG + chr6_3:98293994-98294013 Msa0968100:CDS 50.0%
CTCTTTACCCTCTGACCATG+AGG - chr6_3:98294004-98294023 None:intergenic 50.0%
TAAGAGGACTTTCACCGGCG+AGG + chr6_3:98291257-98291276 Msa0968100:CDS 55.0%
! GATTTTGCACGTGACCTCGC+CGG - chr6_3:98291274-98291293 None:intergenic 55.0%
CGACGGAGAAGTCCTGACAT+AGG - chr6_3:98291316-98291335 None:intergenic 55.0%
CGTCGCCGGAGAAAAAACCA+AGG + chr6_3:98291331-98291350 Msa0968100:CDS 55.0%
ACAACTCCGGCGGAATACCT+TGG - chr6_3:98291351-98291370 None:intergenic 55.0%
GAAGGTCCTGATGGAACCGA+CGG + chr6_3:98291424-98291443 Msa0968100:CDS 55.0%
!! TCTTCACCGTCGGTTCCATC+AGG - chr6_3:98291433-98291452 None:intergenic 55.0%
GGAACCGACGGTGAAGATGT+TGG + chr6_3:98291436-98291455 Msa0968100:CDS 55.0%
GTCAGCCAAACCTCGGTTGT+TGG + chr6_3:98292551-98292570 Msa0968100:intron 55.0%
CAGGAGAGATAGAACTGGGG+AGG + chr6_3:98292715-98292734 Msa0968100:intron 55.0%
GGAGAGATAGAACTGGGGAG+GGG + chr6_3:98292717-98292736 Msa0968100:intron 55.0%
TAGAACTGGGGAGGGGAAAG+AGG + chr6_3:98292724-98292743 Msa0968100:intron 55.0%
AGAACTGGGGAGGGGAAAGA+GGG + chr6_3:98292725-98292744 Msa0968100:intron 55.0%
GGGAGGGGAAAGAGGGATAT+TGG + chr6_3:98292732-98292751 Msa0968100:intron 55.0%
TCCTCCAAAGCTGCAGAGTC+TGG + chr6_3:98293016-98293035 Msa0968100:CDS 55.0%
! ACCAGACTCTGCAGCTTTGG+AGG - chr6_3:98293020-98293039 None:intergenic 55.0%
TCCAAAGCTGCAGAGTCTGG+TGG + chr6_3:98293019-98293038 Msa0968100:CDS 55.0%
TCCACCAGACTCTGCAGCTT+TGG - chr6_3:98293023-98293042 None:intergenic 55.0%
GTTGCAATGGGAAGCTCGTG+TGG + chr6_3:98293116-98293135 Msa0968100:CDS 55.0%
TGCACATGCTGCAAAAGGGC+CGG + chr6_3:98293159-98293178 Msa0968100:CDS 55.0%
GACGACTACAGGCCTGTTGA+AGG + chr6_3:98293779-98293798 Msa0968100:CDS 55.0%
CGTCCATGCTTCTTCCATCC+TGG - chr6_3:98293882-98293901 None:intergenic 55.0%
GAGGTTGCGTTCAATGTCCC+TGG + chr6_3:98293908-98293927 Msa0968100:CDS 55.0%
CTGAGCTTCCTCATGGTCAG+AGG + chr6_3:98293993-98294012 Msa0968100:CDS 55.0%
!! TCAGAGGGTAAAGAGCGCTG+CGG + chr6_3:98294009-98294028 Msa0968100:CDS 55.0%
GCCGCCAGACAGGTTAACTG+TGG - chr6_3:98291016-98291035 None:intergenic 60.0%
TGTCAGGACTTCTCCGTCGC+CGG + chr6_3:98291317-98291336 Msa0968100:CDS 60.0%
GTGCACCAAGCCAAGGTGTG+TGG - chr6_3:98293144-98293163 None:intergenic 60.0%
GCAGCATGTGCACCAAGCCA+AGG - chr6_3:98293151-98293170 None:intergenic 60.0%
ATGCTGCAAAAGGGCCGGTG+AGG + chr6_3:98293164-98293183 Msa0968100:CDS 60.0%
TGCGGCTACTGCTGCATACC+AGG + chr6_3:98294027-98294046 Msa0968100:CDS 60.0%
GGAACTGCGCAACTTTGGCC+TGG - chr6_3:98294048-98294067 None:intergenic 60.0%
TCGTGTGGCGCCACACACCT+TGG + chr6_3:98293131-98293150 Msa0968100:CDS 65.0%
TGGCGCCACACACCTTGGCT+TGG + chr6_3:98293136-98293155 Msa0968100:CDS 65.0%
ACCTGAAGCGCGCGTCGAAG+AGG - chr6_3:98293190-98293209 None:intergenic 65.0%
CTCTGCTGGACCTTCGCTCC+TGG - chr6_3:98293621-98293640 None:intergenic 65.0%
GCGCGTCGAAGAGGCCTCAC+CGG - chr6_3:98293181-98293200 None:intergenic 70.0%
GCCTCTTCGACGCGCGCTTC+AGG + chr6_3:98293186-98293205 Msa0968100:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 98290992 98294666 98290992 ID=Msa0968100;Name=Msa0968100
chr6_3 mRNA 98290992 98294666 98290992 ID=Msa0968100-mRNA-1;Parent=Msa0968100;Name=Msa0968100-mRNA-1;_AED=0.02;_eAED=0.02;_QI=219|1|1|1|1|1|3|546|477
chr6_3 exon 98290992 98291672 98290992 ID=Msa0968100-mRNA-1:exon:18431;Parent=Msa0968100-mRNA-1
chr6_3 exon 98292860 98293207 98292860 ID=Msa0968100-mRNA-1:exon:18432;Parent=Msa0968100-mRNA-1
chr6_3 exon 98293497 98294666 98293497 ID=Msa0968100-mRNA-1:exon:18433;Parent=Msa0968100-mRNA-1
chr6_3 five_prime_UTR 98290992 98291210 98290992 ID=Msa0968100-mRNA-1:five_prime_utr;Parent=Msa0968100-mRNA-1
chr6_3 CDS 98291211 98291672 98291211 ID=Msa0968100-mRNA-1:cds;Parent=Msa0968100-mRNA-1
chr6_3 CDS 98292860 98293207 98292860 ID=Msa0968100-mRNA-1:cds;Parent=Msa0968100-mRNA-1
chr6_3 CDS 98293497 98294120 98293497 ID=Msa0968100-mRNA-1:cds;Parent=Msa0968100-mRNA-1
chr6_3 three_prime_UTR 98294121 98294666 98294121 ID=Msa0968100-mRNA-1:three_prime_utr;Parent=Msa0968100-mRNA-1
Gene Sequence

>Msa0968100

ATGGAGCGAAAACAAGGCTTCTTTTCATCCCTTAAAGACGAAGTAGTAAGAGGACTTTCACCGGCGAGGTCACGTGCAAAATCTCCGGCGAGAAGTGCTTCTCCTATGTCAGGACTTCTCCGTCGCCGGAGAAAAAACCAAGGTATTCCGCCGGAGTTGTTTATGACGAGATCGGGAAGTTTAAGACCGGTAGAAGCTTTATCACCGTTGAAAGAAGGTCCTGATGGAACCGACGGTGAAGATGTTGGTAACAGAGGTGAAGGAAAATGGGGTCATTGGATGAAGGGTCAATTAGCTAGAGCACCTTCCGTTTCTTCTTCGAGTTCTTCTTCTTCTTCTTCTTCAGCATCCAAAAAATCTGATCTGAGATTGCTTCTTGGTGTTTTGGGTGCTCCTCTTGCACCTGTTCATGTTTGTACTACTGATCCTTTTCCTCATCTCAGCATCAAAGACATTCCCATTGAAACTTCTTCTGCTCAGTACATATTGCAGCAATACATTGCCTCTTCGGGTGGTTTGAAGATTCAAAATTCAATTAACAATGCTTATGCCATGGGAAAGGTGAGGATGATAGCCTCCGAGTTTGAGACAGCTAACAAAGTCACCCGTAGCCGGAATTCCTCCAAAGCTGCAGAGTCTGGTGGATTTGTCTTGTGGCAGATGAATCCGGATATGTGGTATGTGGAGCTTGCTCTTGGTGGTAGTAAAGTTCATGCTGGTTGCAATGGGAAGCTCGTGTGGCGCCACACACCTTGGCTTGGTGCACATGCTGCAAAAGGGCCGGTGAGGCCTCTTCGACGCGCGCTTCAGGGTCTTGATCCAAGAACTACTGCTAGCATGTTTATCAATGCAAGATGCATTGGGGAGAAGAAGATAAATGAAGAGGATTGTTTCATCCTCAAGCTTTGTGCAGATCCGTCGACATTAAAAGCCAGGAGCGAAGGTCCAGCAGAGATCATAAGGCACGTTTTGTTCGGATACTTTAGTCAGAAAACAGGACTTCTTGTCCATTTGGAAGATTCCCATTTGACCCGCATTCAGAACAATGGAGGCGATGCAGTTTATTGGGAGACCACGATAAATTCATTTCTTGACGACTACAGGCCTGTTGAAGGGATTATGATTGCTCACTCGGGTCGATCTGTAGTGACACTTTTCAGGTTTGGAGAAACAGCAATGAGCCATACTAAAACCAGGATGGAAGAAGCATGGACGATTGAGGAGGTTGCGTTCAATGTCCCTGGCCTTTCCATAGACTGTTTCATTCCTCCATCAGAGCTACGATTTGCTTCTATAAGTGAAGCTTCTGAGCTTCCTCATGGTCAGAGGGTAAAGAGCGCTGCGGCTACTGCTGCATACCAGGCCAAAGTTGCGCAGTTCCAAAAATCACACGAAAGCAATACGAATAACATTAACTGGACAGTGGATGTTTAG
Protein sequence

>Msa0968100

MERKQGFFSSLKDEVVRGLSPARSRAKSPARSASPMSGLLRRRRKNQGIPPELFMTRSGSLRPVEALSPLKEGPDGTDGEDVGNRGEGKWGHWMKGQLARAPSVSSSSSSSSSSSASKKSDLRLLLGVLGAPLAPVHVCTTDPFPHLSIKDIPIETSSAQYILQQYIASSGGLKIQNSINNAYAMGKVRMIASEFETANKVTRSRNSSKAAESGGFVLWQMNPDMWYVELALGGSKVHAGCNGKLVWRHTPWLGAHAAKGPVRPLRRALQGLDPRTTASMFINARCIGEKKINEEDCFILKLCADPSTLKARSEGPAEIIRHVLFGYFSQKTGLLVHLEDSHLTRIQNNGGDAVYWETTINSFLDDYRPVEGIMIAHSGRSVVTLFRFGETAMSHTKTRMEEAWTIEEVAFNVPGLSIDCFIPPSELRFASISEASELPHGQRVKSAAATAAYQAKVAQFQKSHESNTNNINWTVDV*