AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0018290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0018290 MtrunA17_Chr1g0152841 97.684 475 6 2 1 475 1 470 0.0 957
Msa0018290 MtrunA17_Chr1g0207581 71.992 482 115 6 1 475 1 469 0.0 703
Msa0018290 MtrunA17_Chr3g0134521 71.429 448 85 4 1 444 1 409 0.0 617
Msa0018290 MtrunA17_Chr2g0309941 55.405 370 152 5 65 425 15 380 3.08e-146 423
Msa0018290 MtrunA17_Chr3g0112781 44.131 426 197 5 49 461 22 419 7.24e-125 370
Msa0018290 MtrunA17_Chr1g0176101 48.066 362 167 5 67 425 4 347 3.97e-113 338
Msa0018290 MtrunA17_Chr5g0436191 43.112 392 197 7 92 469 40 419 4.66e-108 327
Msa0018290 MtrunA17_Chr1g0154851 45.272 349 175 7 82 426 30 366 1.03e-102 311
Msa0018290 MtrunA17_Chr5g0403841 44.745 333 174 4 93 425 53 375 5.02e-98 300
Msa0018290 MtrunA17_Chr3g0141481 43.052 367 196 5 67 424 11 373 2.96e-97 298
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0018290 AT3G19540.1 66.734 493 138 7 1 475 1 485 0.0 634
Msa0018290 AT1G49840.1 62.008 508 146 9 1 475 1 494 0.0 600
Msa0018290 AT1G27690.1 65.410 451 124 9 1 444 1 426 0.0 572
Msa0018290 AT1G79420.1 50.777 386 165 8 63 425 16 399 2.32e-132 389
Msa0018290 AT5G05840.1 53.560 323 137 4 116 426 66 387 1.87e-123 367
Msa0018290 AT5G06610.1 47.721 373 165 9 64 427 1 352 1.20e-110 332
Msa0018290 AT5G66740.1 45.559 349 177 5 82 427 30 368 1.60e-101 308
Msa0018290 AT3G55720.1 43.646 362 182 7 84 425 31 390 2.87e-96 297
Msa0018290 AT1G75160.1 45.833 312 153 6 123 425 87 391 1.73e-92 286

Find 169 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTACTACTTCGTCTTTA+AGG 0.085357 1_1:-30552351 None:intergenic
AATTGTTGTAGCTTTATTTA+AGG 0.136676 1_1:+30555252 Msa0018290:three_prime_UTR
GAGATTGCTTCTTGGTGTTT+TGG 0.193845 1_1:+30552681 Msa0018290:CDS
ATGGAGGCGATGCAGTTTAT+TGG 0.240082 1_1:+30554837 Msa0018290:CDS
GTTGTTGTTGTTAGTTTGTT+TGG 0.253761 1_1:-30552167 None:intergenic
GCCTCTTCGACGCGCGCTTC+AGG 0.284085 1_1:+30554291 Msa0018290:CDS
GCAATACGAATAACATTAAC+TGG 0.307266 1_1:+30555188 Msa0018290:CDS
GTAACAGAGGTGAAGGAAAA+TGG 0.320652 1_1:+30552569 Msa0018290:CDS
TGGTTTCAAGGCACTAATAT+TGG 0.321801 1_1:+30555616 Msa0018290:three_prime_UTR
TCTGATCTGAGATTGCTTCT+TGG 0.323802 1_1:+30552673 Msa0018290:CDS
TCCACCAGACTCTGCAGCTT+TGG 0.331778 1_1:-30554125 None:intergenic
TAAATAAAGCTACAACAATT+AGG 0.332430 1_1:-30555249 None:intergenic
TGTTGTGTTGAAACGGAAAT+TGG 0.334303 1_1:-30552231 None:intergenic
GGTTTGGTGATGGTAATTTC+AGG 0.334470 1_1:+30555637 Msa0018290:three_prime_UTR
CAGCAATACATTGCCTCTTC+GGG 0.342499 1_1:+30553992 Msa0018290:CDS
ATTGTTGTAGCTTTATTTAA+GGG 0.345216 1_1:+30555253 Msa0018290:three_prime_UTR
GCAGCAATACATTGCCTCTT+CGG 0.348152 1_1:+30553991 Msa0018290:CDS
CTGCAGCTTTGGAGGAATTC+CGG 0.351722 1_1:-30554114 None:intergenic
TGTTCTGAATGCGGGTCAAA+TGG 0.358520 1_1:-30554814 None:intergenic
AACAGGACTTCTTGTCCATT+TGG 0.358795 1_1:+30554784 Msa0018290:CDS
ACAGTGGCAAAGTTGTAAAA+TGG 0.359953 1_1:+30552303 Msa0018290:exon
TGGAGGCGATGCAGTTTATT+GGG 0.360194 1_1:+30554838 Msa0018290:CDS
TCTTACTACTTCGTCTTTAA+GGG 0.360832 1_1:-30552350 None:intergenic
AGCTTTATTTAAGGGCCATT+TGG 0.361123 1_1:+30555261 Msa0018290:three_prime_UTR
CTCTGCTGGACCTTCGCTCC+TGG 0.365481 1_1:-30554723 None:intergenic
AACATGCTAGCAGTAGTTCT+TGG 0.366168 1_1:-30554611 None:intergenic
CGTCCATGCTTCTTCCATCC+TGG 0.367626 1_1:-30554984 None:intergenic
TCCTACTTACTCTGGCTACT+TGG 0.372013 1_1:-30555737 None:intergenic
TTGTTGTTGTTAGTTTGTTT+GGG 0.385072 1_1:-30552166 None:intergenic
GATTCCCAATTTCACACTAT+AGG 0.398978 1_1:-30555461 None:intergenic
TCCTCCAAAGCTGCAGAGTC+TGG 0.404172 1_1:+30554121 Msa0018290:CDS
GTGAAGGAAAATGGGGTCAT+TGG 0.407465 1_1:+30552578 Msa0018290:CDS
TGCGGCTACTGCTGCATACC+AGG 0.410924 1_1:+30555132 Msa0018290:CDS
CTTTGGAGGAATTCCGGCTA+CGG 0.421308 1_1:-30554108 None:intergenic
TCAAGGCACTAATATTGGTT+TGG 0.421768 1_1:+30555621 Msa0018290:three_prime_UTR
TTATCAATGCAAGATGCATT+GGG 0.427914 1_1:+30554633 Msa0018290:CDS
ATTCATTTCTTGACGACTAC+AGG 0.428100 1_1:+30554873 Msa0018290:CDS
TGTCTTGTGGCAGATGAATC+CGG 0.434759 1_1:+30554150 Msa0018290:CDS
ACCAGACTCTGCAGCTTTGG+AGG 0.442826 1_1:-30554122 None:intergenic
CTTGGTGCACATGCTGCAAA+AGG 0.443126 1_1:+30554259 Msa0018290:CDS
TGGAGGAATGAAACAGTCTA+TGG 0.445554 1_1:-30555041 None:intergenic
AAGGTCCAGCAGAGATCATA+AGG 0.446893 1_1:+30554732 Msa0018290:CDS
TTTATCAATGCAAGATGCAT+TGG 0.453729 1_1:+30554632 Msa0018290:CDS
TAACAGAGGTGAAGGAAAAT+GGG 0.455369 1_1:+30552570 Msa0018290:CDS
CTTAAAGACGAAGTAGTAAG+AGG 0.465018 1_1:+30552352 Msa0018290:CDS
AGGGATTATGATTGCTCACT+CGG 0.466646 1_1:+30554904 Msa0018290:CDS
GACGACTACAGGCCTGTTGA+AGG 0.466767 1_1:+30554884 Msa0018290:CDS
GCCACTGTGAAGAGAGAGAA+AGG 0.468810 1_1:-30552288 None:intergenic
ACGTGCCTTATGATCTCTGC+TGG 0.469337 1_1:-30554737 None:intergenic
GAGTTGTTTATGACGAGATC+GGG 0.469641 1_1:+30552475 Msa0018290:CDS
AGAAGAACTCGAAGAAGAAA+CGG 0.472026 1_1:-30552629 None:intergenic
ACAAATTACTGCAGGTAAAA+CGG 0.472385 1_1:+30555295 Msa0018290:three_prime_UTR
GGATACTTTAGTCAGAAAAC+AGG 0.478492 1_1:+30554767 Msa0018290:CDS
TCAGTAGTACAAACATGAAC+AGG 0.483324 1_1:-30552718 None:intergenic
TTAAGGGCCATTTGGTTCAC+GGG 0.483782 1_1:+30555269 Msa0018290:three_prime_UTR
AAAGTTCATGCTGGTTGCAA+TGG 0.484470 1_1:+30554208 Msa0018290:CDS
AAAATGATTTCTATTACTCT+AGG 0.486131 1_1:+30555386 Msa0018290:three_prime_UTR
TTGATGCTGAGATGAGGAAA+AGG 0.486272 1_1:-30552742 None:intergenic
TTTAAGGGCCATTTGGTTCA+CGG 0.487658 1_1:+30555268 Msa0018290:three_prime_UTR
TGGTATGTGGAGCTTGCTCT+TGG 0.487663 1_1:+30554178 Msa0018290:CDS
AAAACGGTAAAGATTGCAGC+AGG 0.491939 1_1:+30555311 Msa0018290:three_prime_UTR
GCTTTATCACCGTTGAAAGA+AGG 0.492252 1_1:+30552517 Msa0018290:CDS
GCAATCATAATCCCTTCAAC+AGG 0.492671 1_1:-30554896 None:intergenic
GCCTCCATTGTTCTGAATGC+GGG 0.493956 1_1:-30554822 None:intergenic
TAGTCCACAGTTAACCTGTC+TGG 0.497605 1_1:+30552126 Msa0018290:five_prime_UTR
GAAATGTATTGCCGCCAGAC+AGG 0.497936 1_1:-30552140 None:intergenic
ATTAACAATGCTTATGCCAT+GGG 0.499132 1_1:+30554037 Msa0018290:CDS
AATTAACAATGCTTATGCCA+TGG 0.501037 1_1:+30554036 Msa0018290:CDS
AGCTCCACATACCACATATC+CGG 0.501178 1_1:-30554169 None:intergenic
TATGTGGAGCTTGCTCTTGG+TGG 0.503264 1_1:+30554181 Msa0018290:CDS
AGAAGTGCTTCTCCTATGTC+AGG 0.505134 1_1:+30552412 Msa0018290:CDS
GAAGCAAATCGTAGCTCTGA+TGG 0.505604 1_1:-30555061 None:intergenic
TCTTCACCGTCGGTTCCATC+AGG 0.505819 1_1:-30552541 None:intergenic
ATTAGGCTAATTCAGAAACT+TGG 0.507896 1_1:-30555232 None:intergenic
AAGTTCATGCTGGTTGCAAT+GGG 0.508862 1_1:+30554209 Msa0018290:CDS
GGAACTGCGCAACTTTGGCC+TGG 0.509019 1_1:-30555150 None:intergenic
TCAAATGGGAATCTTCCAAA+TGG 0.509295 1_1:-30554799 None:intergenic
TTTGGAGGAATTCCGGCTAC+GGG 0.510925 1_1:-30554107 None:intergenic
CACTAATATTGGTTTGGTGA+TGG 0.515225 1_1:+30555627 Msa0018290:three_prime_UTR
GAGGTTGCGTTCAATGTCCC+TGG 0.515312 1_1:+30555013 Msa0018290:CDS
GTTCTGAATGCGGGTCAAAT+GGG 0.515684 1_1:-30554813 None:intergenic
TGGCGCCACACACCTTGGCT+TGG 0.515830 1_1:+30554241 Msa0018290:CDS
ATCCGTCGACATTAAAAGCC+AGG 0.517562 1_1:+30554705 Msa0018290:CDS
CGCCTCCATTGTTCTGAATG+CGG 0.518551 1_1:-30554823 None:intergenic
AATTTAGCTCCTACTTACTC+TGG 0.519632 1_1:-30555745 None:intergenic
AAACAGTCTATGGAAAGGCC+AGG 0.521856 1_1:-30555031 None:intergenic
GGAGTTGTTTATGACGAGAT+CGG 0.522536 1_1:+30552474 Msa0018290:CDS
CCATCAGGACCTTCTTTCAA+CGG 0.524176 1_1:-30552526 None:intergenic
AAAATGGGGTCATTGGATGA+AGG 0.524835 1_1:+30552585 Msa0018290:CDS
GAGGTCACGTGCAAAATCTC+CGG 0.526889 1_1:+30552387 Msa0018290:CDS
CTGAGCTTCCTCATGGTCAG+AGG 0.527585 1_1:+30555098 Msa0018290:CDS
TTGTCATCCCGTGAACCAAA+TGG 0.529126 1_1:-30555276 None:intergenic
TTGCTGTTGTTGTGTTGAAA+CGG 0.532958 1_1:-30552238 None:intergenic
ACAACTCCGGCGGAATACCT+TGG 0.535390 1_1:-30552459 None:intergenic
TGTCAGGACTTCTCCGTCGC+CGG 0.539180 1_1:+30552428 Msa0018290:CDS
CAATACATTGCCTCTTCGGG+TGG 0.539607 1_1:+30553995 Msa0018290:CDS
AACGGTGATAAAGCTTCTAC+CGG 0.541189 1_1:-30552508 None:intergenic
TGTAAAATGGAGCGAAAACA+AGG 0.541632 1_1:+30552316 Msa0018290:exon
GCGCGTCGAAGAGGCCTCAC+CGG 0.547654 1_1:-30554283 None:intergenic
ACGACTACAGGCCTGTTGAA+GGG 0.551805 1_1:+30554885 Msa0018290:CDS
CTAGTGATCTTGAAACATCA+TGG 0.556936 1_1:-30555552 None:intergenic
GGAAGAAGCATGGACGATTG+AGG 0.557617 1_1:+30554991 Msa0018290:CDS
GATGTTGGTAACAGAGGTGA+AGG 0.558467 1_1:+30552562 Msa0018290:CDS
TCCAAAGCTGCAGAGTCTGG+TGG 0.559419 1_1:+30554124 Msa0018290:CDS
ACCTGAAGCGCGCGTCGAAG+AGG 0.560247 1_1:-30554292 None:intergenic
AGTCTGGTGGATTTGTCTTG+TGG 0.566455 1_1:+30554137 Msa0018290:CDS
GTGGACGATTATGTACATCA+AGG 0.571251 1_1:+30555415 Msa0018290:three_prime_UTR
AATCTTCAAACCACCCGAAG+AGG 0.574587 1_1:-30554005 None:intergenic
GCAGCATGTGCACCAAGCCA+AGG 0.575022 1_1:-30554253 None:intergenic
CTAACAAAGTCACCCGTAGC+CGG 0.577034 1_1:+30554095 Msa0018290:CDS
ACATTAAAAGCCAGGAGCGA+AGG 0.577670 1_1:+30554713 Msa0018290:CDS
GTTGCAATGGGAAGCTCGTG+TGG 0.578665 1_1:+30554221 Msa0018290:CDS
CCGTTGAAAGAAGGTCCTGA+TGG 0.579878 1_1:+30552526 Msa0018290:CDS
CCCTTTCTCTCTCTTCACAG+TGG 0.580573 1_1:+30552287 Msa0018290:five_prime_UTR
CAATGCTTATGCCATGGGAA+AGG 0.581877 1_1:+30554042 Msa0018290:CDS
GGAGAAGAAGATAAATGAAG+AGG 0.582179 1_1:+30554655 Msa0018290:CDS
ACGGATCTGCACAAAGCTTG+AGG 0.586516 1_1:-30554688 None:intergenic
GGTGGTAGTAAAGTTCATGC+TGG 0.588736 1_1:+30554199 Msa0018290:CDS
TGCACATGCTGCAAAAGGGC+CGG 0.591594 1_1:+30554264 Msa0018290:CDS
TTGACCCGCATTCAGAACAA+TGG 0.592514 1_1:+30554818 Msa0018290:CDS
ATGCTGCAAAAGGGCCGGTG+AGG 0.593168 1_1:+30554269 Msa0018290:CDS
GAAGCTTCTGAGCTTCCTCA+TGG 0.594259 1_1:+30555091 Msa0018290:CDS
GGGATTATGATTGCTCACTC+GGG 0.594647 1_1:+30554905 Msa0018290:CDS
GTTACCAACATCTTCACCGT+CGG 0.597204 1_1:-30552551 None:intergenic
CCACTGTGAAGAGAGAGAAA+GGG 0.600459 1_1:-30552287 None:intergenic
ATAGGAGAAGCACTTCTCGC+CGG 0.601989 1_1:-30552406 None:intergenic
CAAACATGAACAGGTGCAAG+AGG 0.602523 1_1:-30552709 None:intergenic
CGACGGAGAAGTCCTGACAT+AGG 0.603265 1_1:-30552424 None:intergenic
ACGGGATGACAAATTACTGC+AGG 0.605013 1_1:+30555287 Msa0018290:three_prime_UTR
TCGTGTGGCGCCACACACCT+TGG 0.605281 1_1:+30554236 Msa0018290:CDS
TGAGCTTCCTCATGGTCAGA+GGG 0.606171 1_1:+30555099 Msa0018290:CDS
TTGGTGCACATGCTGCAAAA+GGG 0.607369 1_1:+30554260 Msa0018290:CDS
GAGCCATACTAAAACCAGGA+TGG 0.613270 1_1:+30554970 Msa0018290:CDS
TTTGTTAGCAGTCTCAAACT+CGG 0.615182 1_1:-30554080 None:intergenic
ACCAAGTAGCCAGAGTAAGT+AGG 0.615354 1_1:+30555736 Msa0018290:three_prime_UTR
AAACCAGGATGGAAGAAGCA+TGG 0.615435 1_1:+30554981 Msa0018290:CDS
AAATGGGGTCATTGGATGAA+GGG 0.616766 1_1:+30552586 Msa0018290:CDS
GTGCACCAAGCCAAGGTGTG+TGG 0.620387 1_1:-30554246 None:intergenic
CTCTTTACCCTCTGACCATG+AGG 0.622184 1_1:-30555106 None:intergenic
TATCATCCTCACCTTTCCCA+TGG 0.623660 1_1:-30554053 None:intergenic
GAAGGTCCTGATGGAACCGA+CGG 0.626057 1_1:+30552535 Msa0018290:CDS
ACCCGCATTCAGAACAATGG+AGG 0.627450 1_1:+30554821 Msa0018290:CDS
AACAGTCTATGGAAAGGCCA+GGG 0.628998 1_1:-30555030 None:intergenic
GGCAGATGAATCCGGATATG+TGG 0.630821 1_1:+30554158 Msa0018290:CDS
CAATGAGCCATACTAAAACC+AGG 0.631927 1_1:+30554966 Msa0018290:CDS
GAATGAAACAGTCTATGGAA+AGG 0.638202 1_1:-30555036 None:intergenic
GAATCCGGATATGTGGTATG+TGG 0.641508 1_1:+30554165 Msa0018290:CDS
TCACACTATAGGAAAAGATG+TGG 0.643030 1_1:-30555450 None:intergenic
GGTGAAGATGTTGGTAACAG+AGG 0.650817 1_1:+30552556 Msa0018290:CDS
TATCAATGCAAGATGCATTG+GGG 0.653185 1_1:+30554634 Msa0018290:CDS
GTCAAGAAATGAATTTATCG+TGG 0.654911 1_1:-30554864 None:intergenic
AGTAGTAAGAGGACTTTCAC+CGG 0.655141 1_1:+30552363 Msa0018290:CDS
GAGATCGGGAAGTTTAAGAC+CGG 0.655639 1_1:+30552489 Msa0018290:CDS
AGAAGCATGGACGATTGAGG+AGG 0.662743 1_1:+30554994 Msa0018290:CDS
GATCTCGTCATAAACAACTC+CGG 0.670627 1_1:-30552472 None:intergenic
ATGTCTTTGATGCTGAGATG+AGG 0.670912 1_1:-30552748 None:intergenic
AACAGAGGTGAAGGAAAATG+GGG 0.671749 1_1:+30552571 Msa0018290:CDS
TCCACAGTTAACCTGTCTGG+CGG 0.672871 1_1:+30552129 Msa0018290:five_prime_UTR
TAAGAGGACTTTCACCGGCG+AGG 0.673982 1_1:+30552368 Msa0018290:CDS
GAACTCGAAGAAGAAACGGA+AGG 0.676634 1_1:-30552625 None:intergenic
GAATAACATTAACTGGACAG+TGG 0.679369 1_1:+30555195 Msa0018290:CDS
GCAAATCGTAGCTCTGATGG+AGG 0.679907 1_1:-30555058 None:intergenic
GGAACCGACGGTGAAGATGT+TGG 0.691934 1_1:+30552547 Msa0018290:CDS
GTTAGCAGTCTCAAACTCGG+AGG 0.710125 1_1:-30554077 None:intergenic
GCCGCCAGACAGGTTAACTG+TGG 0.712330 1_1:-30552130 None:intergenic
CTCGTCATAAACAACTCCGG+CGG 0.713466 1_1:-30552469 None:intergenic
AAACGGTAAAGATTGCAGCA+GGG 0.753590 1_1:+30555312 Msa0018290:three_prime_UTR
TCAGAGGGTAAAGAGCGCTG+CGG 0.765849 1_1:+30555114 Msa0018290:CDS
CTTATGCCATGGGAAAGGTG+AGG 0.780728 1_1:+30554047 Msa0018290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAATTAATTTTAACATGTTT+GGG - chr1_1:30553580-30553599 None:intergenic 15.0%
!!! ACAATTAATTTTAACATGTT+TGG - chr1_1:30553581-30553600 None:intergenic 15.0%
!! GTTATGTTTGAAAATCTAAT+AGG + chr1_1:30553135-30553154 Msa0018290:intron 20.0%
!! AGAACAAAAAAAACAGAAAA+AGG - chr1_1:30553202-30553221 None:intergenic 20.0%
!! AAACTAACTTATGAATGATA+AGG - chr1_1:30554404-30554423 None:intergenic 20.0%
!!! ATTTCTGTTATAGTTTGTTA+AGG + chr1_1:30554425-30554444 Msa0018290:intron 20.0%
!!! TTTCTGTTATAGTTTGTTAA+GGG + chr1_1:30554426-30554445 Msa0018290:intron 20.0%
!! TAAATAAAGCTACAACAATT+AGG - chr1_1:30555252-30555271 None:intergenic 20.0%
!!! AATTGTTGTAGCTTTATTTA+AGG + chr1_1:30555252-30555271 Msa0018290:three_prime_UTR 20.0%
!!! ATTGTTGTAGCTTTATTTAA+GGG + chr1_1:30555253-30555272 Msa0018290:three_prime_UTR 20.0%
!! AAAATGATTTCTATTACTCT+AGG + chr1_1:30555386-30555405 Msa0018290:three_prime_UTR 20.0%
!!! TTGTTGTTGTTAGTTTGTTT+GGG - chr1_1:30552169-30552188 None:intergenic 25.0%
! GAGATAGAAAAACTAACAAT+GGG - chr1_1:30552775-30552794 None:intergenic 25.0%
! AGAGATAGAAAAACTAACAA+TGG - chr1_1:30552776-30552795 None:intergenic 25.0%
! GAAAATCTAATAGGCTAATT+AGG + chr1_1:30553144-30553163 Msa0018290:intron 25.0%
!!! TTTTTGTTCTGTGTTTTGAT+TGG + chr1_1:30553212-30553231 Msa0018290:intron 25.0%
! GATGTGATTTATGTTTAGAA+AGG + chr1_1:30553431-30553450 Msa0018290:intron 25.0%
! TTGTATTCGTGTTTAATACA+TGG + chr1_1:30553597-30553616 Msa0018290:intron 25.0%
!!! AGTTACTTTTGATGCTATAA+TGG + chr1_1:30553870-30553889 Msa0018290:intron 25.0%
!! AGAGGCATATATGTTAATTT+AGG - chr1_1:30554342-30554361 None:intergenic 25.0%
! ACTACTTATCTAATAACAAG+AGG - chr1_1:30554360-30554379 None:intergenic 25.0%
! TTATGAATGATAAGGAGAAA+AGG - chr1_1:30554396-30554415 None:intergenic 25.0%
!!! TATAGTTTGTTAAGGGATAT+TGG + chr1_1:30554433-30554452 Msa0018290:intron 25.0%
!!! ATAGTTTGTTAAGGGATATT+GGG + chr1_1:30554434-30554453 Msa0018290:intron 25.0%
! CAAGTCTAAATTGATAAACA+TGG - chr1_1:30554548-30554567 None:intergenic 25.0%
!!! TTAGACTTGTTTCTATGTAT+AGG + chr1_1:30554580-30554599 Msa0018290:intron 25.0%
!!! TAGACTTGTTTCTATGTATA+GGG + chr1_1:30554581-30554600 Msa0018290:intron 25.0%
!! TTTCTATTACTCTAGGTTTT+TGG + chr1_1:30555393-30555412 Msa0018290:three_prime_UTR 25.0%
!! TTTTCCTATAGTGTGAAATT+GGG + chr1_1:30555457-30555476 Msa0018290:three_prime_UTR 25.0%
!!! TTCAACAGTTTTATCAAAGA+TGG - chr1_1:30555671-30555690 None:intergenic 25.0%
!! GTTGTTGTTGTTAGTTTGTT+TGG - chr1_1:30552170-30552189 None:intergenic 30.0%
TCTTACTACTTCGTCTTTAA+GGG - chr1_1:30552353-30552372 None:intergenic 30.0%
!!! CAATCTCAGATCAGATTTTT+TGG - chr1_1:30552668-30552687 None:intergenic 30.0%
!!! TTTTTTTCCTGTTAATCCTC+CGG + chr1_1:30552807-30552826 Msa0018290:intron 30.0%
! TTGTTTATATTTGAGACCAG+AGG + chr1_1:30552955-30552974 Msa0018290:intron 30.0%
! TGTTTATATTTGAGACCAGA+GGG + chr1_1:30552956-30552975 Msa0018290:intron 30.0%
ATCAATTGATTGAGCTTAAG+TGG - chr1_1:30553076-30553095 None:intergenic 30.0%
CTAATTAGGTGAAACATCAT+AGG + chr1_1:30553158-30553177 Msa0018290:intron 30.0%
!!! GTTTTGACTTTTGAGTAACT+TGG + chr1_1:30553254-30553273 Msa0018290:intron 30.0%
TTGAGTGTGAAAATCATGTT+TGG + chr1_1:30553483-30553502 Msa0018290:intron 30.0%
GTTAATTCTAACTTGAAGCT+AGG - chr1_1:30553525-30553544 None:intergenic 30.0%
CAAGTTAGAATTAACTCTGT+AGG + chr1_1:30553530-30553549 Msa0018290:intron 30.0%
ATGGTCTATTGGATGATATT+CGG + chr1_1:30553790-30553809 Msa0018290:intron 30.0%
! GGTTTCTCTTTTTCTACATT+TGG + chr1_1:30553891-30553910 Msa0018290:intron 30.0%
!! ATATAATTTGCTGTTGTTGC+AGG + chr1_1:30553943-30553962 Msa0018290:intron 30.0%
AATTAACAATGCTTATGCCA+TGG + chr1_1:30554036-30554055 Msa0018290:CDS 30.0%
ATTAACAATGCTTATGCCAT+GGG + chr1_1:30554037-30554056 Msa0018290:CDS 30.0%
TTTATCAATGCAAGATGCAT+TGG + chr1_1:30554632-30554651 Msa0018290:CDS 30.0%
TTATCAATGCAAGATGCATT+GGG + chr1_1:30554633-30554652 Msa0018290:CDS 30.0%
GTCAAGAAATGAATTTATCG+TGG - chr1_1:30554867-30554886 None:intergenic 30.0%
! TATTGCTTTCGTGTGATTTT+TGG - chr1_1:30555174-30555193 None:intergenic 30.0%
GCAATACGAATAACATTAAC+TGG + chr1_1:30555188-30555207 Msa0018290:CDS 30.0%
ATTAGGCTAATTCAGAAACT+TGG - chr1_1:30555235-30555254 None:intergenic 30.0%
ACAAATTACTGCAGGTAAAA+CGG + chr1_1:30555295-30555314 Msa0018290:three_prime_UTR 30.0%
! CTTTTCCTATAGTGTGAAAT+TGG + chr1_1:30555456-30555475 Msa0018290:three_prime_UTR 30.0%
! TTTTCGTTGCTGGAAAATTT+TGG + chr1_1:30555590-30555609 Msa0018290:three_prime_UTR 30.0%
!!! AAATTTTGGCTTTGGTTTCA+AGG + chr1_1:30555604-30555623 Msa0018290:three_prime_UTR 30.0%
TGTTGTGTTGAAACGGAAAT+TGG - chr1_1:30552234-30552253 None:intergenic 35.0%
! TTGCTGTTGTTGTGTTGAAA+CGG - chr1_1:30552241-30552260 None:intergenic 35.0%
ACAGTGGCAAAGTTGTAAAA+TGG + chr1_1:30552303-30552322 Msa0018290:exon 35.0%
TGTAAAATGGAGCGAAAACA+AGG + chr1_1:30552316-30552335 Msa0018290:exon 35.0%
CTCTTACTACTTCGTCTTTA+AGG - chr1_1:30552354-30552373 None:intergenic 35.0%
CTTAAAGACGAAGTAGTAAG+AGG + chr1_1:30552352-30552371 Msa0018290:CDS 35.0%
!!! GAATACCTTGGTTTTTTCTC+CGG - chr1_1:30552450-30552469 None:intergenic 35.0%
TAACAGAGGTGAAGGAAAAT+GGG + chr1_1:30552570-30552589 Msa0018290:CDS 35.0%
AGAAGAACTCGAAGAAGAAA+CGG - chr1_1:30552632-30552651 None:intergenic 35.0%
!!! AGATTGCTTCTTGGTGTTTT+GGG + chr1_1:30552682-30552701 Msa0018290:CDS 35.0%
TCAGTAGTACAAACATGAAC+AGG - chr1_1:30552721-30552740 None:intergenic 35.0%
ATAACAGATTCCCTGATAAC+CGG - chr1_1:30552829-30552848 None:intergenic 35.0%
TCAACACATTAATCGAACTC+AGG + chr1_1:30553006-30553025 Msa0018290:intron 35.0%
ATTAATCGAACTCAGGTTCT+CGG + chr1_1:30553013-30553032 Msa0018290:intron 35.0%
! ATTGGTAGCTAGGAAATTGA+TGG + chr1_1:30553230-30553249 Msa0018290:intron 35.0%
! TTGGTAGCTAGGAAATTGAT+GGG + chr1_1:30553231-30553250 Msa0018290:intron 35.0%
TGCTATACTATGTGTGTGTT+TGG + chr1_1:30553336-30553355 Msa0018290:intron 35.0%
TGAAGCTAGGATTATAGCTT+TGG - chr1_1:30553512-30553531 None:intergenic 35.0%
CGTGTTTAATACATGGTTTG+TGG + chr1_1:30553604-30553623 Msa0018290:intron 35.0%
TTAGATTAATCCAACAACCG+AGG - chr1_1:30553669-30553688 None:intergenic 35.0%
TGGTCTATTGGATGATATTC+GGG + chr1_1:30553791-30553810 Msa0018290:intron 35.0%
AGTAATGCAATGTAGTGTTG+TGG + chr1_1:30553918-30553937 Msa0018290:intron 35.0%
TTTGTTAGCAGTCTCAAACT+CGG - chr1_1:30554083-30554102 None:intergenic 35.0%
TATCAATGCAAGATGCATTG+GGG + chr1_1:30554634-30554653 Msa0018290:CDS 35.0%
GGAGAAGAAGATAAATGAAG+AGG + chr1_1:30554655-30554674 Msa0018290:CDS 35.0%
!! ATCATAAGGCACGTTTTGTT+CGG + chr1_1:30554746-30554765 Msa0018290:CDS 35.0%
GGATACTTTAGTCAGAAAAC+AGG + chr1_1:30554767-30554786 Msa0018290:CDS 35.0%
TCAAATGGGAATCTTCCAAA+TGG - chr1_1:30554802-30554821 None:intergenic 35.0%
ATTCATTTCTTGACGACTAC+AGG + chr1_1:30554873-30554892 Msa0018290:CDS 35.0%
GAATGAAACAGTCTATGGAA+AGG - chr1_1:30555039-30555058 None:intergenic 35.0%
GAATAACATTAACTGGACAG+TGG + chr1_1:30555195-30555214 Msa0018290:CDS 35.0%
!! AGCTTTATTTAAGGGCCATT+TGG + chr1_1:30555261-30555280 Msa0018290:three_prime_UTR 35.0%
!! CTATTACTCTAGGTTTTTGG+TGG + chr1_1:30555396-30555415 Msa0018290:three_prime_UTR 35.0%
TCACACTATAGGAAAAGATG+TGG - chr1_1:30555453-30555472 None:intergenic 35.0%
GATTCCCAATTTCACACTAT+AGG - chr1_1:30555464-30555483 None:intergenic 35.0%
CTAGTGATCTTGAAACATCA+TGG - chr1_1:30555555-30555574 None:intergenic 35.0%
!! TATAACCTAGTTTTCGTTGC+TGG + chr1_1:30555580-30555599 Msa0018290:three_prime_UTR 35.0%
! ATTTTCCAGCAACGAAAACT+AGG - chr1_1:30555588-30555607 None:intergenic 35.0%
!!! TTGCTGGAAAATTTTGGCTT+TGG + chr1_1:30555596-30555615 Msa0018290:three_prime_UTR 35.0%
! TGGTTTCAAGGCACTAATAT+TGG + chr1_1:30555616-30555635 Msa0018290:three_prime_UTR 35.0%
! TCAAGGCACTAATATTGGTT+TGG + chr1_1:30555621-30555640 Msa0018290:three_prime_UTR 35.0%
!! CACTAATATTGGTTTGGTGA+TGG + chr1_1:30555627-30555646 Msa0018290:three_prime_UTR 35.0%
! AATTTAGCTCCTACTTACTC+TGG - chr1_1:30555748-30555767 None:intergenic 35.0%
AGTAGTAAGAGGACTTTCAC+CGG + chr1_1:30552363-30552382 Msa0018290:CDS 40.0%
! AAAAAACCAAGGTATTCCGC+CGG + chr1_1:30552453-30552472 Msa0018290:CDS 40.0%
GATCTCGTCATAAACAACTC+CGG - chr1_1:30552475-30552494 None:intergenic 40.0%
GGAGTTGTTTATGACGAGAT+CGG + chr1_1:30552474-30552493 Msa0018290:CDS 40.0%
GAGTTGTTTATGACGAGATC+GGG + chr1_1:30552475-30552494 Msa0018290:CDS 40.0%
AACGGTGATAAAGCTTCTAC+CGG - chr1_1:30552511-30552530 None:intergenic 40.0%
GCTTTATCACCGTTGAAAGA+AGG + chr1_1:30552517-30552536 Msa0018290:CDS 40.0%
GTAACAGAGGTGAAGGAAAA+TGG + chr1_1:30552569-30552588 Msa0018290:CDS 40.0%
AACAGAGGTGAAGGAAAATG+GGG + chr1_1:30552571-30552590 Msa0018290:CDS 40.0%
AAAATGGGGTCATTGGATGA+AGG + chr1_1:30552585-30552604 Msa0018290:CDS 40.0%
AAATGGGGTCATTGGATGAA+GGG + chr1_1:30552586-30552605 Msa0018290:CDS 40.0%
! TCTGATCTGAGATTGCTTCT+TGG + chr1_1:30552673-30552692 Msa0018290:CDS 40.0%
!!! GAGATTGCTTCTTGGTGTTT+TGG + chr1_1:30552681-30552700 Msa0018290:CDS 40.0%
TTGATGCTGAGATGAGGAAA+AGG - chr1_1:30552745-30552764 None:intergenic 40.0%
ATGTCTTTGATGCTGAGATG+AGG - chr1_1:30552751-30552770 None:intergenic 40.0%
TGTTAATCCTCCGGTTATCA+GGG + chr1_1:30552816-30552835 Msa0018290:intron 40.0%
TCAGGGAATCTGTTATTCTC+TGG + chr1_1:30552833-30552852 Msa0018290:intron 40.0%
TTAATCGAACTCAGGTTCTC+GGG + chr1_1:30553014-30553033 Msa0018290:intron 40.0%
TCTCGAATGATTCGTGCTAA+GGG + chr1_1:30553040-30553059 Msa0018290:intron 40.0%
!!! CTGTGTTTTGATTGGTAGCT+AGG + chr1_1:30553220-30553239 Msa0018290:intron 40.0%
TGGTAGCTAGGAAATTGATG+GGG + chr1_1:30553232-30553251 Msa0018290:intron 40.0%
TTGAGTAACTTGGCAAGACT+AGG + chr1_1:30553264-30553283 Msa0018290:intron 40.0%
! ACTATGTGTGTGTTTGGTTC+TGG + chr1_1:30553342-30553361 Msa0018290:intron 40.0%
TTAATCCAACAACCGAGGTT+TGG - chr1_1:30553664-30553683 None:intergenic 40.0%
AACAGCCAAGATATACACGT+TGG + chr1_1:30553687-30553706 Msa0018290:intron 40.0%
ACAGCCAAGATATACACGTT+GGG + chr1_1:30553688-30553707 Msa0018290:intron 40.0%
CAGTATCTCCAGCCAAATTT+CGG - chr1_1:30553740-30553759 None:intergenic 40.0%
ATACTGCAAAGGATCCAAGT+TGG + chr1_1:30553754-30553773 Msa0018290:intron 40.0%
TACTGCAAAGGATCCAAGTT+GGG + chr1_1:30553755-30553774 Msa0018290:intron 40.0%
TTTGTGCTCTCATGGTCTAT+TGG + chr1_1:30553779-30553798 Msa0018290:intron 40.0%
! AAAGTTCATGCTGGTTGCAA+TGG + chr1_1:30554208-30554227 Msa0018290:CDS 40.0%
! AAGTTCATGCTGGTTGCAAT+GGG + chr1_1:30554209-30554228 Msa0018290:CDS 40.0%
ACATGGTAGCAGTTGTTCTT+GGG - chr1_1:30554531-30554550 None:intergenic 40.0%
AACATGGTAGCAGTTGTTCT+TGG - chr1_1:30554532-30554551 None:intergenic 40.0%
AACATGCTAGCAGTAGTTCT+TGG - chr1_1:30554614-30554633 None:intergenic 40.0%
AACAGGACTTCTTGTCCATT+TGG + chr1_1:30554784-30554803 Msa0018290:CDS 40.0%
GCAATCATAATCCCTTCAAC+AGG - chr1_1:30554899-30554918 None:intergenic 40.0%
AGGGATTATGATTGCTCACT+CGG + chr1_1:30554904-30554923 Msa0018290:CDS 40.0%
! GATCTGTAGTGACACTTTTC+AGG + chr1_1:30554930-30554949 Msa0018290:CDS 40.0%
!!! GTAGTGACACTTTTCAGGTT+TGG + chr1_1:30554935-30554954 Msa0018290:CDS 40.0%
CAATGAGCCATACTAAAACC+AGG + chr1_1:30554966-30554985 Msa0018290:CDS 40.0%
!!! CTTCCATCCTGGTTTTAGTA+TGG - chr1_1:30554976-30554995 None:intergenic 40.0%
TGGAGGAATGAAACAGTCTA+TGG - chr1_1:30555044-30555063 None:intergenic 40.0%
!!! TTTTTGGAACTGCGCAACTT+TGG - chr1_1:30555158-30555177 None:intergenic 40.0%
! TTTAAGGGCCATTTGGTTCA+CGG + chr1_1:30555268-30555287 Msa0018290:three_prime_UTR 40.0%
AAAACGGTAAAGATTGCAGC+AGG + chr1_1:30555311-30555330 Msa0018290:three_prime_UTR 40.0%
AAACGGTAAAGATTGCAGCA+GGG + chr1_1:30555312-30555331 Msa0018290:three_prime_UTR 40.0%
GTGGACGATTATGTACATCA+AGG + chr1_1:30555415-30555434 Msa0018290:three_prime_UTR 40.0%
!! GGTTTGGTGATGGTAATTTC+AGG + chr1_1:30555637-30555656 Msa0018290:three_prime_UTR 40.0%
TAGTCCACAGTTAACCTGTC+TGG + chr1_1:30552126-30552145 Msa0018290:five_prime_UTR 45.0%
CCACTGTGAAGAGAGAGAAA+GGG - chr1_1:30552290-30552309 None:intergenic 45.0%
!! AGAAGTGCTTCTCCTATGTC+AGG + chr1_1:30552412-30552431 Msa0018290:CDS 45.0%
! GAGATCGGGAAGTTTAAGAC+CGG + chr1_1:30552489-30552508 Msa0018290:CDS 45.0%
CCATCAGGACCTTCTTTCAA+CGG - chr1_1:30552529-30552548 None:intergenic 45.0%
GTTACCAACATCTTCACCGT+CGG - chr1_1:30552554-30552573 None:intergenic 45.0%
!! GGTGAAGATGTTGGTAACAG+AGG + chr1_1:30552556-30552575 Msa0018290:CDS 45.0%
!! GATGTTGGTAACAGAGGTGA+AGG + chr1_1:30552562-30552581 Msa0018290:CDS 45.0%
GTGAAGGAAAATGGGGTCAT+TGG + chr1_1:30552578-30552597 Msa0018290:CDS 45.0%
GAACTCGAAGAAGAAACGGA+AGG - chr1_1:30552628-30552647 None:intergenic 45.0%
CAAACATGAACAGGTGCAAG+AGG - chr1_1:30552712-30552731 None:intergenic 45.0%
CTGATAACCGGAGGATTAAC+AGG - chr1_1:30552817-30552836 None:intergenic 45.0%
CTGTTAATCCTCCGGTTATC+AGG + chr1_1:30552815-30552834 Msa0018290:intron 45.0%
CAAGCTTTCATAACTCCCTC+TGG - chr1_1:30552974-30552993 None:intergenic 45.0%
GTCTCGAATGATTCGTGCTA+AGG + chr1_1:30553039-30553058 Msa0018290:intron 45.0%
GTATCTTGTCAGCCAAACCT+CGG + chr1_1:30553649-30553668 Msa0018290:intron 45.0%
ACGACCCAACGTGTATATCT+TGG - chr1_1:30553695-30553714 None:intergenic 45.0%
! CAAATTTCGGTATCGGGAGT+TGG - chr1_1:30553727-30553746 None:intergenic 45.0%
CAACTCCCGATACCGAAATT+TGG + chr1_1:30553725-30553744 Msa0018290:intron 45.0%
TCCAGCCAAATTTCGGTATC+GGG - chr1_1:30553733-30553752 None:intergenic 45.0%
CTCCAGCCAAATTTCGGTAT+CGG - chr1_1:30553734-30553753 None:intergenic 45.0%
TTTGGCTGGAGATACTGCAA+AGG + chr1_1:30553743-30553762 Msa0018290:intron 45.0%
! TGAGAGCACAAAACCCAACT+TGG - chr1_1:30553771-30553790 None:intergenic 45.0%
!! AGTTGGGTTTTGTGCTCTCA+TGG + chr1_1:30553771-30553790 Msa0018290:intron 45.0%
TGTGCAGGAGAGATAGAACT+GGG + chr1_1:30553816-30553835 Msa0018290:intron 45.0%
GCAGCAATACATTGCCTCTT+CGG + chr1_1:30553991-30554010 Msa0018290:CDS 45.0%
CAGCAATACATTGCCTCTTC+GGG + chr1_1:30553992-30554011 Msa0018290:CDS 45.0%
AATCTTCAAACCACCCGAAG+AGG - chr1_1:30554008-30554027 None:intergenic 45.0%
CAATGCTTATGCCATGGGAA+AGG + chr1_1:30554042-30554061 Msa0018290:CDS 45.0%
TATCATCCTCACCTTTCCCA+TGG - chr1_1:30554056-30554075 None:intergenic 45.0%
!! AGTCTGGTGGATTTGTCTTG+TGG + chr1_1:30554137-30554156 Msa0018290:CDS 45.0%
TGTCTTGTGGCAGATGAATC+CGG + chr1_1:30554150-30554169 Msa0018290:CDS 45.0%
GAATCCGGATATGTGGTATG+TGG + chr1_1:30554165-30554184 Msa0018290:CDS 45.0%
AGCTCCACATACCACATATC+CGG - chr1_1:30554172-30554191 None:intergenic 45.0%
GGTGGTAGTAAAGTTCATGC+TGG + chr1_1:30554199-30554218 Msa0018290:CDS 45.0%
TTGGTGCACATGCTGCAAAA+GGG + chr1_1:30554260-30554279 Msa0018290:CDS 45.0%
ATCCGTCGACATTAAAAGCC+AGG + chr1_1:30554705-30554724 Msa0018290:CDS 45.0%
!! CTCCTGGCTTTTAATGTCGA+CGG - chr1_1:30554710-30554729 None:intergenic 45.0%
ACATTAAAAGCCAGGAGCGA+AGG + chr1_1:30554713-30554732 Msa0018290:CDS 45.0%
AAGGTCCAGCAGAGATCATA+AGG + chr1_1:30554732-30554751 Msa0018290:CDS 45.0%
! GTTCTGAATGCGGGTCAAAT+GGG - chr1_1:30554816-30554835 None:intergenic 45.0%
! TGTTCTGAATGCGGGTCAAA+TGG - chr1_1:30554817-30554836 None:intergenic 45.0%
TTGACCCGCATTCAGAACAA+TGG + chr1_1:30554818-30554837 Msa0018290:CDS 45.0%
ATGGAGGCGATGCAGTTTAT+TGG + chr1_1:30554837-30554856 Msa0018290:CDS 45.0%
TGGAGGCGATGCAGTTTATT+GGG + chr1_1:30554838-30554857 Msa0018290:CDS 45.0%
GGGATTATGATTGCTCACTC+GGG + chr1_1:30554905-30554924 Msa0018290:CDS 45.0%
GAGCCATACTAAAACCAGGA+TGG + chr1_1:30554970-30554989 Msa0018290:CDS 45.0%
AAACCAGGATGGAAGAAGCA+TGG + chr1_1:30554981-30555000 Msa0018290:CDS 45.0%
AACAGTCTATGGAAAGGCCA+GGG - chr1_1:30555033-30555052 None:intergenic 45.0%
AAACAGTCTATGGAAAGGCC+AGG - chr1_1:30555034-30555053 None:intergenic 45.0%
!! GAAGCAAATCGTAGCTCTGA+TGG - chr1_1:30555064-30555083 None:intergenic 45.0%
! TTAAGGGCCATTTGGTTCAC+GGG + chr1_1:30555269-30555288 Msa0018290:three_prime_UTR 45.0%
TTGTCATCCCGTGAACCAAA+TGG - chr1_1:30555279-30555298 None:intergenic 45.0%
ACGGGATGACAAATTACTGC+AGG + chr1_1:30555287-30555306 Msa0018290:three_prime_UTR 45.0%
ACCAAGTAGCCAGAGTAAGT+AGG + chr1_1:30555736-30555755 Msa0018290:three_prime_UTR 45.0%
TCCTACTTACTCTGGCTACT+TGG - chr1_1:30555740-30555759 None:intergenic 45.0%
TCCACAGTTAACCTGTCTGG+CGG + chr1_1:30552129-30552148 Msa0018290:five_prime_UTR 50.0%
GAAATGTATTGCCGCCAGAC+AGG - chr1_1:30552143-30552162 None:intergenic 50.0%
CCCTTTCTCTCTCTTCACAG+TGG + chr1_1:30552287-30552306 Msa0018290:five_prime_UTR 50.0%
GCCACTGTGAAGAGAGAGAA+AGG - chr1_1:30552291-30552310 None:intergenic 50.0%
GAGGTCACGTGCAAAATCTC+CGG + chr1_1:30552387-30552406 Msa0018290:CDS 50.0%
!! ATAGGAGAAGCACTTCTCGC+CGG - chr1_1:30552409-30552428 None:intergenic 50.0%
!!! CTTGGTTTTTTCTCCGGCGA+CGG - chr1_1:30552444-30552463 None:intergenic 50.0%
CTCGTCATAAACAACTCCGG+CGG - chr1_1:30552472-30552491 None:intergenic 50.0%
CCGTTGAAAGAAGGTCCTGA+TGG + chr1_1:30552526-30552545 Msa0018290:CDS 50.0%
ACAGATTCCCTGATAACCGG+AGG - chr1_1:30552826-30552845 None:intergenic 50.0%
TCCCGATACCGAAATTTGGC+TGG + chr1_1:30553729-30553748 Msa0018290:intron 50.0%
GATGATATTCGGGTGTGTGC+AGG + chr1_1:30553801-30553820 Msa0018290:intron 50.0%
GTGTGCAGGAGAGATAGAAC+TGG + chr1_1:30553815-30553834 Msa0018290:intron 50.0%
GTGCAGGAGAGATAGAACTG+GGG + chr1_1:30553817-30553836 Msa0018290:intron 50.0%
AGGAGAGATAGAACTGGGGA+GGG + chr1_1:30553821-30553840 Msa0018290:intron 50.0%
GGAGGGGAAAGAGGGATATT+GGG + chr1_1:30553838-30553857 Msa0018290:intron 50.0%
CAATACATTGCCTCTTCGGG+TGG + chr1_1:30553995-30554014 Msa0018290:CDS 50.0%
CTTATGCCATGGGAAAGGTG+AGG + chr1_1:30554047-30554066 Msa0018290:CDS 50.0%
GTTAGCAGTCTCAAACTCGG+AGG - chr1_1:30554080-30554099 None:intergenic 50.0%
CTAACAAAGTCACCCGTAGC+CGG + chr1_1:30554095-30554114 Msa0018290:CDS 50.0%
TTTGGAGGAATTCCGGCTAC+GGG - chr1_1:30554110-30554129 None:intergenic 50.0%
! CTTTGGAGGAATTCCGGCTA+CGG - chr1_1:30554111-30554130 None:intergenic 50.0%
!! CTGCAGCTTTGGAGGAATTC+CGG - chr1_1:30554117-30554136 None:intergenic 50.0%
GGCAGATGAATCCGGATATG+TGG + chr1_1:30554158-30554177 Msa0018290:CDS 50.0%
! TGGTATGTGGAGCTTGCTCT+TGG + chr1_1:30554178-30554197 Msa0018290:CDS 50.0%
! TATGTGGAGCTTGCTCTTGG+TGG + chr1_1:30554181-30554200 Msa0018290:CDS 50.0%
! CTTGGTGCACATGCTGCAAA+AGG + chr1_1:30554259-30554278 Msa0018290:CDS 50.0%
ACGGATCTGCACAAAGCTTG+AGG - chr1_1:30554691-30554710 None:intergenic 50.0%
ACGTGCCTTATGATCTCTGC+TGG - chr1_1:30554740-30554759 None:intergenic 50.0%
ACCCGCATTCAGAACAATGG+AGG + chr1_1:30554821-30554840 Msa0018290:CDS 50.0%
! GCCTCCATTGTTCTGAATGC+GGG - chr1_1:30554825-30554844 None:intergenic 50.0%
! CGCCTCCATTGTTCTGAATG+CGG - chr1_1:30554826-30554845 None:intergenic 50.0%
ACGACTACAGGCCTGTTGAA+GGG + chr1_1:30554885-30554904 Msa0018290:CDS 50.0%
! GGAAGAAGCATGGACGATTG+AGG + chr1_1:30554991-30555010 Msa0018290:CDS 50.0%
! AGAAGCATGGACGATTGAGG+AGG + chr1_1:30554994-30555013 Msa0018290:CDS 50.0%
!! GCAAATCGTAGCTCTGATGG+AGG - chr1_1:30555061-30555080 None:intergenic 50.0%
GAAGCTTCTGAGCTTCCTCA+TGG + chr1_1:30555091-30555110 Msa0018290:CDS 50.0%
TGAGCTTCCTCATGGTCAGA+GGG + chr1_1:30555099-30555118 Msa0018290:CDS 50.0%
CTCTTTACCCTCTGACCATG+AGG - chr1_1:30555109-30555128 None:intergenic 50.0%
TAAGAGGACTTTCACCGGCG+AGG + chr1_1:30552368-30552387 Msa0018290:CDS 55.0%
! GATTTTGCACGTGACCTCGC+CGG - chr1_1:30552385-30552404 None:intergenic 55.0%
CGACGGAGAAGTCCTGACAT+AGG - chr1_1:30552427-30552446 None:intergenic 55.0%
CGTCGCCGGAGAAAAAACCA+AGG + chr1_1:30552442-30552461 Msa0018290:CDS 55.0%
ACAACTCCGGCGGAATACCT+TGG - chr1_1:30552462-30552481 None:intergenic 55.0%
GAAGGTCCTGATGGAACCGA+CGG + chr1_1:30552535-30552554 Msa0018290:CDS 55.0%
!! TCTTCACCGTCGGTTCCATC+AGG - chr1_1:30552544-30552563 None:intergenic 55.0%
GGAACCGACGGTGAAGATGT+TGG + chr1_1:30552547-30552566 Msa0018290:CDS 55.0%
GTCAGCCAAACCTCGGTTGT+TGG + chr1_1:30553656-30553675 Msa0018290:intron 55.0%
CAGGAGAGATAGAACTGGGG+AGG + chr1_1:30553820-30553839 Msa0018290:intron 55.0%
GGAGAGATAGAACTGGGGAG+GGG + chr1_1:30553822-30553841 Msa0018290:intron 55.0%
TAGAACTGGGGAGGGGAAAG+AGG + chr1_1:30553829-30553848 Msa0018290:intron 55.0%
AGAACTGGGGAGGGGAAAGA+GGG + chr1_1:30553830-30553849 Msa0018290:intron 55.0%
GGGAGGGGAAAGAGGGATAT+TGG + chr1_1:30553837-30553856 Msa0018290:intron 55.0%
TCCTCCAAAGCTGCAGAGTC+TGG + chr1_1:30554121-30554140 Msa0018290:CDS 55.0%
! ACCAGACTCTGCAGCTTTGG+AGG - chr1_1:30554125-30554144 None:intergenic 55.0%
TCCAAAGCTGCAGAGTCTGG+TGG + chr1_1:30554124-30554143 Msa0018290:CDS 55.0%
TCCACCAGACTCTGCAGCTT+TGG - chr1_1:30554128-30554147 None:intergenic 55.0%
GTTGCAATGGGAAGCTCGTG+TGG + chr1_1:30554221-30554240 Msa0018290:CDS 55.0%
TGCACATGCTGCAAAAGGGC+CGG + chr1_1:30554264-30554283 Msa0018290:CDS 55.0%
GACGACTACAGGCCTGTTGA+AGG + chr1_1:30554884-30554903 Msa0018290:CDS 55.0%
CGTCCATGCTTCTTCCATCC+TGG - chr1_1:30554987-30555006 None:intergenic 55.0%
GAGGTTGCGTTCAATGTCCC+TGG + chr1_1:30555013-30555032 Msa0018290:CDS 55.0%
CTGAGCTTCCTCATGGTCAG+AGG + chr1_1:30555098-30555117 Msa0018290:CDS 55.0%
!! TCAGAGGGTAAAGAGCGCTG+CGG + chr1_1:30555114-30555133 Msa0018290:CDS 55.0%
GCCGCCAGACAGGTTAACTG+TGG - chr1_1:30552133-30552152 None:intergenic 60.0%
TGTCAGGACTTCTCCGTCGC+CGG + chr1_1:30552428-30552447 Msa0018290:CDS 60.0%
GTGCACCAAGCCAAGGTGTG+TGG - chr1_1:30554249-30554268 None:intergenic 60.0%
GCAGCATGTGCACCAAGCCA+AGG - chr1_1:30554256-30554275 None:intergenic 60.0%
ATGCTGCAAAAGGGCCGGTG+AGG + chr1_1:30554269-30554288 Msa0018290:CDS 60.0%
TGCGGCTACTGCTGCATACC+AGG + chr1_1:30555132-30555151 Msa0018290:CDS 60.0%
GGAACTGCGCAACTTTGGCC+TGG - chr1_1:30555153-30555172 None:intergenic 60.0%
TCGTGTGGCGCCACACACCT+TGG + chr1_1:30554236-30554255 Msa0018290:CDS 65.0%
TGGCGCCACACACCTTGGCT+TGG + chr1_1:30554241-30554260 Msa0018290:CDS 65.0%
ACCTGAAGCGCGCGTCGAAG+AGG - chr1_1:30554295-30554314 None:intergenic 65.0%
CTCTGCTGGACCTTCGCTCC+TGG - chr1_1:30554726-30554745 None:intergenic 65.0%
GCGCGTCGAAGAGGCCTCAC+CGG - chr1_1:30554286-30554305 None:intergenic 70.0%
GCCTCTTCGACGCGCGCTTC+AGG + chr1_1:30554291-30554310 Msa0018290:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 30552109 30555771 30552109 ID=Msa0018290;Name=Msa0018290
chr1_1 mRNA 30552109 30555771 30552109 ID=Msa0018290-mRNA-1;Parent=Msa0018290;Name=Msa0018290-mRNA-1;_AED=0.02;_eAED=0.02;_QI=213|1|1|1|1|1|3|546|475
chr1_1 exon 30552109 30552777 30552109 ID=Msa0018290-mRNA-1:exon:10177;Parent=Msa0018290-mRNA-1
chr1_1 exon 30553965 30554312 30553965 ID=Msa0018290-mRNA-1:exon:10178;Parent=Msa0018290-mRNA-1
chr1_1 exon 30554602 30555771 30554602 ID=Msa0018290-mRNA-1:exon:10179;Parent=Msa0018290-mRNA-1
chr1_1 five_prime_UTR 30552109 30552321 30552109 ID=Msa0018290-mRNA-1:five_prime_utr;Parent=Msa0018290-mRNA-1
chr1_1 CDS 30552322 30552777 30552322 ID=Msa0018290-mRNA-1:cds;Parent=Msa0018290-mRNA-1
chr1_1 CDS 30553965 30554312 30553965 ID=Msa0018290-mRNA-1:cds;Parent=Msa0018290-mRNA-1
chr1_1 CDS 30554602 30555225 30554602 ID=Msa0018290-mRNA-1:cds;Parent=Msa0018290-mRNA-1
chr1_1 three_prime_UTR 30555226 30555771 30555226 ID=Msa0018290-mRNA-1:three_prime_utr;Parent=Msa0018290-mRNA-1
Gene Sequence

>Msa0018290

ATGGAGCGAAAACAAGGCTTCTTTTCATCCCTTAAAGACGAAGTAGTAAGAGGACTTTCACCGGCGAGGTCACGTGCAAAATCTCCGGCGAGAAGTGCTTCTCCTATGTCAGGACTTCTCCGTCGCCGGAGAAAAAACCAAGGTATTCCGCCGGAGTTGTTTATGACGAGATCGGGAAGTTTAAGACCGGTAGAAGCTTTATCACCGTTGAAAGAAGGTCCTGATGGAACCGACGGTGAAGATGTTGGTAACAGAGGTGAAGGAAAATGGGGTCATTGGATGAAGGGTCAATTAGCTAGAGCACCTTCCGTTTCTTCTTCGAGTTCTTCTTCTTCTTCAGCATCCAAAAAATCTGATCTGAGATTGCTTCTTGGTGTTTTGGGTGCTCCTCTTGCACCTGTTCATGTTTGTACTACTGATCCTTTTCCTCATCTCAGCATCAAAGACATTCCCATTGAAACTTCTTCTGCTCAGTACATATTGCAGCAATACATTGCCTCTTCGGGTGGTTTGAAGATTCAAAATTCAATTAACAATGCTTATGCCATGGGAAAGGTGAGGATGATAGCCTCCGAGTTTGAGACTGCTAACAAAGTCACCCGTAGCCGGAATTCCTCCAAAGCTGCAGAGTCTGGTGGATTTGTCTTGTGGCAGATGAATCCGGATATGTGGTATGTGGAGCTTGCTCTTGGTGGTAGTAAAGTTCATGCTGGTTGCAATGGGAAGCTCGTGTGGCGCCACACACCTTGGCTTGGTGCACATGCTGCAAAAGGGCCGGTGAGGCCTCTTCGACGCGCGCTTCAGGGTCTTGATCCAAGAACTACTGCTAGCATGTTTATCAATGCAAGATGCATTGGGGAGAAGAAGATAAATGAAGAGGATTGTTTCATCCTCAAGCTTTGTGCAGATCCGTCGACATTAAAAGCCAGGAGCGAAGGTCCAGCAGAGATCATAAGGCACGTTTTGTTCGGATACTTTAGTCAGAAAACAGGACTTCTTGTCCATTTGGAAGATTCCCATTTGACCCGCATTCAGAACAATGGAGGCGATGCAGTTTATTGGGAGACCACGATAAATTCATTTCTTGACGACTACAGGCCTGTTGAAGGGATTATGATTGCTCACTCGGGTCGATCTGTAGTGACACTTTTCAGGTTTGGAGAAACAGCAATGAGCCATACTAAAACCAGGATGGAAGAAGCATGGACGATTGAGGAGGTTGCGTTCAATGTCCCTGGCCTTTCCATAGACTGTTTCATTCCTCCATCAGAGCTACGATTTGCTTCTATAAGTGAAGCTTCTGAGCTTCCTCATGGTCAGAGGGTAAAGAGCGCTGCGGCTACTGCTGCATACCAGGCCAAAGTTGCGCAGTTCCAAAAATCACACGAAAGCAATACGAATAACATTAACTGGACAGTGGATGTTTAG
Protein sequence

>Msa0018290

MERKQGFFSSLKDEVVRGLSPARSRAKSPARSASPMSGLLRRRRKNQGIPPELFMTRSGSLRPVEALSPLKEGPDGTDGEDVGNRGEGKWGHWMKGQLARAPSVSSSSSSSSSASKKSDLRLLLGVLGAPLAPVHVCTTDPFPHLSIKDIPIETSSAQYILQQYIASSGGLKIQNSINNAYAMGKVRMIASEFETANKVTRSRNSSKAAESGGFVLWQMNPDMWYVELALGGSKVHAGCNGKLVWRHTPWLGAHAAKGPVRPLRRALQGLDPRTTASMFINARCIGEKKINEEDCFILKLCADPSTLKARSEGPAEIIRHVLFGYFSQKTGLLVHLEDSHLTRIQNNGGDAVYWETTINSFLDDYRPVEGIMIAHSGRSVVTLFRFGETAMSHTKTRMEEAWTIEEVAFNVPGLSIDCFIPPSELRFASISEASELPHGQRVKSAAATAAYQAKVAQFQKSHESNTNNINWTVDV*