Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0052190 | A0A072VDY9 | 95.938 | 320 | 13 | 0 | 1 | 320 | 1 | 320 | 0.0 | 640 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0018120 | Msa0052190 | 0.894766 | 1.810460e-75 | -8.615850e-47 |
| Msa0052190 | Msa0097230 | 0.902178 | 1.264070e-78 | -8.615850e-47 |
| Msa0052190 | Msa0097320 | 0.820162 | 7.934108e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0052190 | MtrunA17_Chr1g0152781 | 95.950 | 321 | 13 | 0 | 1 | 321 | 1 | 321 | 0.0 | 610 |
| Msa0052190 | MtrunA17_Chr3g0134601 | 59.118 | 340 | 114 | 6 | 1 | 324 | 1 | 331 | 2.60e-129 | 374 |
| Msa0052190 | MtrunA17_Chr4g0072471 | 57.971 | 138 | 56 | 2 | 1 | 137 | 3 | 139 | 2.91e-40 | 145 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0052190 | AT1G27700.1 | 43.614 | 321 | 154 | 4 | 1 | 321 | 1 | 294 | 4.81e-87 | 265 |
| Msa0052190 | AT2G18860.3 | 50.360 | 139 | 58 | 3 | 1 | 137 | 3 | 132 | 6.78e-35 | 129 |
| Msa0052190 | AT2G18860.1 | 50.360 | 139 | 58 | 3 | 1 | 137 | 3 | 132 | 1.77e-34 | 129 |
| Msa0052190 | AT4G30240.1 | 46.914 | 162 | 84 | 2 | 1 | 160 | 3 | 164 | 6.35e-34 | 127 |
| Msa0052190 | AT2G18860.2 | 49.123 | 114 | 47 | 3 | 26 | 137 | 9 | 113 | 4.95e-24 | 100 |
Find 98 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAAAATTGATGAAAATT+TGG | 0.141221 | 1_2:+6378598 | None:intergenic |
| CTTGACGCCATGAATTAAAA+TGG | 0.192881 | 1_2:+6378563 | None:intergenic |
| TCACGGAAGGATTTCAATAT+TGG | 0.201564 | 1_2:+6374347 | None:intergenic |
| GAGCTTGCTTTGTTTCTTTC+GGG | 0.219757 | 1_2:-6377779 | Msa0052190:CDS |
| CGAGCTTGCTTTGTTTCTTT+CGG | 0.245739 | 1_2:-6377780 | Msa0052190:CDS |
| AAATCTCTTCTAAGTTCATT+AGG | 0.250806 | 1_2:+6378131 | None:intergenic |
| CATAAGGTGTCAAGTTTATC+AGG | 0.260959 | 1_2:-6377551 | Msa0052190:CDS |
| GAGAATGAAGCGGGTATAAT+AGG | 0.277243 | 1_2:+6378806 | None:intergenic |
| ATTTACTGCTTCAGTTGTTT+TGG | 0.278796 | 1_2:-6374617 | Msa0052190:intron |
| ATCTCAGACATGGGTGGTTT+TGG | 0.291220 | 1_2:-6377819 | Msa0052190:CDS |
| CTACCCTTGGCACTGCTAAA+TGG | 0.295554 | 1_2:-6378103 | Msa0052190:CDS |
| GACACCTTATGCATTGGATT+TGG | 0.299515 | 1_2:+6377563 | None:intergenic |
| CTGTCCTCCTCAACCTAATA+AGG | 0.302107 | 1_2:-6374403 | Msa0052190:CDS |
| CACGGAAGGATTTCAATATT+GGG | 0.315267 | 1_2:+6374348 | None:intergenic |
| TGCTATGACAAGCATCTCTA+TGG | 0.338103 | 1_2:-6377227 | Msa0052190:CDS |
| AGTTCCTCCAGCGGTTCTTC+TGG | 0.341641 | 1_2:-6377587 | Msa0052190:CDS |
| AATCTCTTCTAAGTTCATTA+GGG | 0.345075 | 1_2:+6378132 | None:intergenic |
| ATTCAGTTGCATCTGGTGTT+GGG | 0.352535 | 1_2:-6377712 | Msa0052190:CDS |
| TAATGCTGCCGAAGAAGTTC+AGG | 0.352747 | 1_2:-6378510 | Msa0052190:CDS |
| GTGGATTGGAGATCCTTATT+AGG | 0.363498 | 1_2:+6374390 | None:intergenic |
| AAGAGTTCTGGTTAGTTTGT+TGG | 0.366295 | 1_2:+6378779 | None:intergenic |
| TTCCAATGGCTGAATTGAAC+AGG | 0.368336 | 1_2:-6377424 | Msa0052190:CDS |
| AGGAATTTGAACGCGAAGTT+AGG | 0.368679 | 1_2:-6377970 | Msa0052190:CDS |
| AAGCGGGTATAATAGGATTA+AGG | 0.371922 | 1_2:+6378813 | None:intergenic |
| CAGGCCGACCGTATTGCATT+TGG | 0.404990 | 1_2:+6377162 | None:intergenic |
| GGGTTGTTGCTTTCAGCTGC+CGG | 0.409203 | 1_2:+6377752 | None:intergenic |
| TTCATTAGGGTTCCACATGC+TGG | 0.412123 | 1_2:+6378145 | None:intergenic |
| GTCTGAGATGCCTTTCTACC+TGG | 0.425960 | 1_2:+6377833 | None:intergenic |
| AAAATTGAATAACATTAAGT+TGG | 0.426618 | 1_2:+6378698 | None:intergenic |
| TAGATCCGAGAGAAGAGTTC+TGG | 0.426631 | 1_2:+6378767 | None:intergenic |
| ATTGAAACAATTATTCGAAC+AGG | 0.428378 | 1_2:+6377143 | None:intergenic |
| GCTAGCGCTAGTGCTGATAT+TGG | 0.431805 | 1_2:-6377650 | Msa0052190:CDS |
| TGGAGATCCTTATTAGGTTG+AGG | 0.434955 | 1_2:+6374396 | None:intergenic |
| TGCAGATTCCTGAACTTCTT+CGG | 0.440150 | 1_2:+6378502 | None:intergenic |
| AAACTTGACACCTTATGCAT+TGG | 0.445466 | 1_2:+6377557 | None:intergenic |
| AATTCAGTTGCATCTGGTGT+TGG | 0.446579 | 1_2:-6377713 | Msa0052190:CDS |
| ATCTGGTGTTGGGGAAGAAA+AGG | 0.470868 | 1_2:-6377702 | Msa0052190:CDS |
| GGCTATAGTGCTGAGGGTGC+AGG | 0.475463 | 1_2:-6374568 | Msa0052190:CDS |
| ATTGAATAACATTAAGTTGG+TGG | 0.479527 | 1_2:+6378701 | None:intergenic |
| AGGTATCACGTGGGCATCGT+AGG | 0.488724 | 1_2:-6377676 | Msa0052190:CDS |
| GAAGGATGGAATCTACATAT+AGG | 0.489714 | 1_2:-6378196 | Msa0052190:intron |
| ACCCTGTTCAATTCAGCCAT+TGG | 0.493805 | 1_2:+6377422 | None:intergenic |
| TTTGTTTCTTTCGGGAATGC+CGG | 0.494226 | 1_2:-6377771 | Msa0052190:CDS |
| TTGAATAACATTAAGTTGGT+GGG | 0.502002 | 1_2:+6378702 | None:intergenic |
| AGAGATTTACTTACTACCCT+TGG | 0.502779 | 1_2:-6378116 | Msa0052190:CDS |
| TGGTCCAAATCCAATGCATA+AGG | 0.505191 | 1_2:-6377567 | Msa0052190:CDS |
| CAATTTCGAAATTGATTCCA+CGG | 0.510644 | 1_2:+6377517 | None:intergenic |
| AACGAACCCTCCAGGTAGAA+AGG | 0.511463 | 1_2:-6377843 | Msa0052190:CDS |
| AGTGCTGAGGGTGCAGGAAG+AGG | 0.514309 | 1_2:-6374562 | Msa0052190:intron |
| GTTAAGTTATAACAGAGACT+TGG | 0.526567 | 1_2:-6377948 | Msa0052190:CDS |
| AAGTTCAGGAATCTGCAGAT+AGG | 0.528981 | 1_2:-6378496 | Msa0052190:intron |
| TTGACGCCATGAATTAAAAT+GGG | 0.533105 | 1_2:+6378564 | None:intergenic |
| TAGAAAGGCATCTCAGACAT+GGG | 0.536615 | 1_2:-6377828 | Msa0052190:CDS |
| GGCGTCAAGTCTTGATCGGT+GGG | 0.538666 | 1_2:-6378549 | Msa0052190:CDS |
| TTCAGTTGCATCTGGTGTTG+GGG | 0.546134 | 1_2:-6377711 | Msa0052190:CDS |
| ATCAGGATTTCTTAGTTCCG+TGG | 0.546937 | 1_2:-6377534 | Msa0052190:CDS |
| CAATCCACCACAGCTAAAAG+TGG | 0.547338 | 1_2:-6374375 | Msa0052190:CDS |
| TTTCGAAATTGAAGTGGCCG+AGG | 0.547944 | 1_2:-6377505 | Msa0052190:CDS |
| TTAGATGAAACGAACCCTCC+AGG | 0.548770 | 1_2:-6377851 | Msa0052190:CDS |
| TGGGCGATGATGCAAGAACT+AGG | 0.548917 | 1_2:-6377928 | Msa0052190:CDS |
| AAATTGAAGTGGCCGAGGAA+TGG | 0.551739 | 1_2:-6377500 | Msa0052190:CDS |
| CCTTGGCACTGCTAAATGGC+AGG | 0.552190 | 1_2:-6378099 | Msa0052190:intron |
| TCTCAATACCAAATGCAATA+CGG | 0.553537 | 1_2:-6377170 | Msa0052190:CDS |
| TTAAGTTATAACAGAGACTT+GGG | 0.559421 | 1_2:-6377947 | Msa0052190:CDS |
| ATTTGGACCAGAAGAACCGC+TGG | 0.562407 | 1_2:+6377580 | None:intergenic |
| GAGATGCCTTTCTACCTGGA+GGG | 0.562553 | 1_2:+6377837 | None:intergenic |
| GGTATCACGTGGGCATCGTA+GGG | 0.569652 | 1_2:-6377675 | Msa0052190:CDS |
| CTGCCATTTAGCAGTGCCAA+GGG | 0.578353 | 1_2:+6378100 | None:intergenic |
| TGAGATGCCTTTCTACCTGG+AGG | 0.581106 | 1_2:+6377836 | None:intergenic |
| GTTGAGGAGGACAGTGCTGA+TGG | 0.584018 | 1_2:+6374412 | None:intergenic |
| GTAGAAAGGCATCTCAGACA+TGG | 0.584968 | 1_2:-6377829 | Msa0052190:CDS |
| ACTAACCAGAACTCTTCTCT+CGG | 0.593288 | 1_2:-6378772 | Msa0052190:five_prime_UTR |
| CCTGCCATTTAGCAGTGCCA+AGG | 0.595735 | 1_2:+6378099 | None:intergenic |
| AATCAATTTCGAAATTGAAG+TGG | 0.596466 | 1_2:-6377511 | Msa0052190:CDS |
| TGGCGTCAAGTCTTGATCGG+TGG | 0.597897 | 1_2:-6378550 | Msa0052190:CDS |
| AGATCCTTATTAGGTTGAGG+AGG | 0.599142 | 1_2:+6374399 | None:intergenic |
| TCATGGCGTCAAGTCTTGAT+CGG | 0.599437 | 1_2:-6378553 | Msa0052190:CDS |
| TGGTGTTGGGGAAGAAAAGG+AGG | 0.605467 | 1_2:-6377699 | Msa0052190:CDS |
| GATCATCATAAAGAAACTGA+TGG | 0.606309 | 1_2:-6377455 | Msa0052190:CDS |
| TTGAATGGCTATAGTGCTGA+GGG | 0.623017 | 1_2:-6374574 | Msa0052190:CDS |
| CCACAATCTCTCATCACGGA+AGG | 0.627674 | 1_2:+6374334 | None:intergenic |
| TGGAATCTACATATAGGACA+TGG | 0.629104 | 1_2:-6378190 | Msa0052190:CDS |
| ATGACAAGCATCTCTATGGA+TGG | 0.634464 | 1_2:-6377223 | Msa0052190:CDS |
| TTTGAATGGCTATAGTGCTG+AGG | 0.640185 | 1_2:-6374575 | Msa0052190:CDS |
| TGATGGTGCACTAATTCCAA+TGG | 0.646457 | 1_2:-6377438 | Msa0052190:CDS |
| AAGCATCTCTATGGATGGTG+TGG | 0.646497 | 1_2:-6377218 | Msa0052190:CDS |
| CCGACTTACCAATCAAGCAA+AGG | 0.648466 | 1_2:+6377111 | None:intergenic |
| TGTTGGGGAAGAAAAGGAGG+AGG | 0.649476 | 1_2:-6377696 | Msa0052190:CDS |
| AATACCAAATGCAATACGGT+CGG | 0.650211 | 1_2:-6377166 | Msa0052190:CDS |
| TCCAATGGCTGAATTGAACA+GGG | 0.653838 | 1_2:-6377423 | Msa0052190:intron |
| AGCATTCATCAGAACTATCG+AGG | 0.656054 | 1_2:+6377246 | None:intergenic |
| CAGCAGTCTAGTTCCTCCAG+CGG | 0.660392 | 1_2:-6377596 | Msa0052190:CDS |
| GAAAAGGAGGAGGTATCACG+TGG | 0.667131 | 1_2:-6377686 | Msa0052190:CDS |
| CTGGAGGAACTAGACTGCTG+CGG | 0.671536 | 1_2:+6377599 | None:intergenic |
| TGGACCAGAAGAACCGCTGG+AGG | 0.681587 | 1_2:+6377583 | None:intergenic |
| TTATAGAAAACTGAAAACAG+TGG | 0.699925 | 1_2:-6377477 | Msa0052190:CDS |
| AAAGGCATCTCAGACATGGG+TGG | 0.701972 | 1_2:-6377825 | Msa0052190:CDS |
| AAAAGGAGGAGGTATCACGT+GGG | 0.768512 | 1_2:-6377685 | Msa0052190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGAAAACAAAAATAAAA+TGG | + | chr1_2:6374467-6374486 | None:intergenic | 10.0% |
| !!! | TTTATATTTTTTTACTTTGT+TGG | - | chr1_2:6374848-6374867 | Msa0052190:intron | 10.0% |
| !!! | AATTTTTATTATATAATCGT+GGG | + | chr1_2:6375465-6375484 | None:intergenic | 10.0% |
| !! | AAAATTGAATAACATTAAGT+TGG | + | chr1_2:6374499-6374518 | None:intergenic | 15.0% |
| !!! | TATTCAATTTTATCATTCAT+TGG | - | chr1_2:6374508-6374527 | Msa0052190:intron | 15.0% |
| !! | TTTGAAAATTGATGAAAATT+TGG | + | chr1_2:6374599-6374618 | None:intergenic | 15.0% |
| !! | CTAATAATAAGAATGAAAAT+TGG | + | chr1_2:6374726-6374745 | None:intergenic | 15.0% |
| !!! | TGATATAGAAATTGAATTTT+TGG | - | chr1_2:6374812-6374831 | Msa0052190:intron | 15.0% |
| !!! | GAATTTTTATTATATAATCG+TGG | + | chr1_2:6375466-6375485 | None:intergenic | 15.0% |
| !!! | ATTTTTAGTTCTTAGAATTA+TGG | - | chr1_2:6377139-6377158 | Msa0052190:CDS | 15.0% |
| !!! | TTTAGTTTTAAAAAGAAAGT+TGG | + | chr1_2:6377831-6377850 | None:intergenic | 15.0% |
| !!! | TATTTAATACTTTTTTCAGA+TGG | + | chr1_2:6378130-6378149 | None:intergenic | 15.0% |
| !! | ATTAATTATTCCTTCTATAA+TGG | - | chr1_2:6378339-6378358 | Msa0052190:intron | 15.0% |
| !! | AAAAGTGAATGAATTAAATT+TGG | + | chr1_2:6378428-6378447 | None:intergenic | 15.0% |
| !! | AAATCAATAGTTAGATAAAT+TGG | - | chr1_2:6378457-6378476 | Msa0052190:intron | 15.0% |
| !!! | ATATGGTTTGATTGTTTTTT+TGG | - | chr1_2:6375185-6375204 | Msa0052190:intron | 20.0% |
| !! | AAAAAATGATGTGATAAAAG+AGG | - | chr1_2:6376934-6376953 | Msa0052190:intron | 20.0% |
| !! | AAAAATGATGTGATAAAAGA+GGG | - | chr1_2:6376935-6376954 | Msa0052190:intron | 20.0% |
| !! | ATACCAAATAACTAATAGAA+GGG | - | chr1_2:6377078-6377097 | Msa0052190:intron | 20.0% |
| !!! | AATTCTGTTTTTGAAATTGT+TGG | - | chr1_2:6377109-6377128 | Msa0052190:intron | 20.0% |
| !!! | ATTCTGTTTTTGAAATTGTT+GGG | - | chr1_2:6377110-6377129 | Msa0052190:intron | 20.0% |
| !! | CTAACATAGTTGAAATAAAT+TGG | + | chr1_2:6377882-6377901 | None:intergenic | 20.0% |
| !!! | ATTATTTTATTTTCCTCTTG+TGG | + | chr1_2:6378526-6378545 | None:intergenic | 20.0% |
| !!! | TTGAATAACATTAAGTTGGT+GGG | + | chr1_2:6374495-6374514 | None:intergenic | 25.0% |
| !!! | ATTGAATAACATTAAGTTGG+TGG | + | chr1_2:6374496-6374515 | None:intergenic | 25.0% |
| !! | AACAGAGATTTTCTCAATTA+GGG | - | chr1_2:6374538-6374557 | Msa0052190:intron | 25.0% |
| ! | TTGAATTCATGAAAATCTTG+AGG | - | chr1_2:6374874-6374893 | Msa0052190:intron | 25.0% |
| ! | TCACTAATGCTTGAAATTTA+TGG | - | chr1_2:6374945-6374964 | Msa0052190:intron | 25.0% |
| ! | TGTGTTTATTGTATTGTTGA+AGG | - | chr1_2:6374980-6374999 | Msa0052190:intron | 25.0% |
| ! | TTTATTGTATTGTTGAAGGA+TGG | - | chr1_2:6374984-6375003 | Msa0052190:intron | 25.0% |
| ! | AATCTCTTCTAAGTTCATTA+GGG | + | chr1_2:6375065-6375084 | None:intergenic | 25.0% |
| ! | AAATCTCTTCTAAGTTCATT+AGG | + | chr1_2:6375066-6375085 | None:intergenic | 25.0% |
| ! | AACTACATACATATTTAGCA+AGG | + | chr1_2:6375144-6375163 | None:intergenic | 25.0% |
| !! | TTTGTTTGAGATATTTGATG+AGG | - | chr1_2:6375162-6375181 | Msa0052190:intron | 25.0% |
| ! | TTAAGTTATAACAGAGACTT+GGG | - | chr1_2:6375247-6375266 | Msa0052190:intron | 25.0% |
| ! | AATAAAAATTCAGTTGCATC+TGG | - | chr1_2:6375475-6375494 | Msa0052190:intron | 25.0% |
| ! | AATCAATTTCGAAATTGAAG+TGG | - | chr1_2:6375683-6375702 | Msa0052190:intron | 25.0% |
| ! | TTATAGAAAACTGAAAACAG+TGG | - | chr1_2:6375717-6375736 | Msa0052190:intron | 25.0% |
| ! | AAAACAACAAAAGCAGAATA+AGG | + | chr1_2:6375802-6375821 | None:intergenic | 25.0% |
| ! | ATTGAAACAATTATTCGAAC+AGG | + | chr1_2:6376054-6376073 | None:intergenic | 25.0% |
| !! | ACTTACTACTTTAGAAATTG+AGG | - | chr1_2:6376175-6376194 | Msa0052190:intron | 25.0% |
| !! | CTTACTACTTTAGAAATTGA+GGG | - | chr1_2:6376176-6376195 | Msa0052190:intron | 25.0% |
| ! | AGTTATGAAGTACAAAAACT+TGG | + | chr1_2:6376304-6376323 | None:intergenic | 25.0% |
| !! | TATTCAAGTTCATAAAACCT+AGG | - | chr1_2:6376491-6376510 | Msa0052190:intron | 25.0% |
| ! | TATCACATAGGTTAAGAAAT+AGG | + | chr1_2:6376524-6376543 | None:intergenic | 25.0% |
| ! | GAAAAATTGAGGAAATTCTA+TGG | + | chr1_2:6376562-6376581 | None:intergenic | 25.0% |
| ! | CATACCAAATAACTAATAGA+AGG | - | chr1_2:6377077-6377096 | Msa0052190:intron | 25.0% |
| ! | ATTCCCTTCTATTAGTTATT+TGG | + | chr1_2:6377084-6377103 | None:intergenic | 25.0% |
| ! | GTTGAAATTAAAGTCAACTA+AGG | + | chr1_2:6377298-6377317 | None:intergenic | 25.0% |
| !!! | CTTGATCGATTTATTTTCAA+AGG | - | chr1_2:6377522-6377541 | Msa0052190:CDS | 25.0% |
| !! | AACTACTTTAAGAACTCAAA+TGG | + | chr1_2:6377604-6377623 | None:intergenic | 25.0% |
| ! | ATTATGATCTACTGAAAATG+AGG | - | chr1_2:6377671-6377690 | Msa0052190:CDS | 25.0% |
| !!! | TCCAATGTCAATTTTAACAT+TGG | - | chr1_2:6377700-6377719 | Msa0052190:CDS | 25.0% |
| !!! | CCAATGTCAATTTTAACATT+GGG | - | chr1_2:6377701-6377720 | Msa0052190:CDS | 25.0% |
| !!! | CTAAAATATTGATTTACTCC+TGG | - | chr1_2:6377744-6377763 | Msa0052190:CDS | 25.0% |
| ! | AGTCTAATCTAAGTATATCT+TGG | - | chr1_2:6378201-6378220 | Msa0052190:intron | 25.0% |
| ! | AAAGTCAAATGCATAATCAA+TGG | - | chr1_2:6378239-6378258 | Msa0052190:intron | 25.0% |
| ! | ATAATCAATGGCTCAATAAA+AGG | - | chr1_2:6378251-6378270 | Msa0052190:intron | 25.0% |
| ! | GGCAAACAAATGAAAATTAA+GGG | + | chr1_2:6378282-6378301 | None:intergenic | 25.0% |
| ! | TGGCAAACAAATGAAAATTA+AGG | + | chr1_2:6378283-6378302 | None:intergenic | 25.0% |
| ! | GTTAAATGATATAGCAAAAC+TGG | + | chr1_2:6378303-6378322 | None:intergenic | 25.0% |
| !!! | ATTCATTCACTTTTCATTCA+AGG | - | chr1_2:6378434-6378453 | Msa0052190:intron | 25.0% |
| ! | AATAGTTAGATAAATTGGAG+TGG | - | chr1_2:6378462-6378481 | Msa0052190:intron | 25.0% |
| ! | CAACAGAGATTTTCTCAATT+AGG | - | chr1_2:6374537-6374556 | Msa0052190:intron | 30.0% |
| TTGACGCCATGAATTAAAAT+GGG | + | chr1_2:6374633-6374652 | None:intergenic | 30.0% | |
| TGAGATATTTGATGAGGATA+TGG | - | chr1_2:6375168-6375187 | Msa0052190:intron | 30.0% | |
| !!! | TGGTTTGATTGTTTTTTTGG+TGG | - | chr1_2:6375188-6375207 | Msa0052190:intron | 30.0% |
| !!! | GGTTTGATTGTTTTTTTGGT+GGG | - | chr1_2:6375189-6375208 | Msa0052190:intron | 30.0% |
| GTTAAGTTATAACAGAGACT+TGG | - | chr1_2:6375246-6375265 | Msa0052190:intron | 30.0% | |
| ! | AGATTTTATCACTGCTATTG+AGG | - | chr1_2:6375294-6375313 | Msa0052190:intron | 30.0% |
| ! | CAATTTCGAAATTGATTCCA+CGG | + | chr1_2:6375680-6375699 | None:intergenic | 30.0% |
| ! | AGTTTTCTATAACCATTCCT+CGG | + | chr1_2:6375709-6375728 | None:intergenic | 30.0% |
| GATCATCATAAAGAAACTGA+TGG | - | chr1_2:6375739-6375758 | Msa0052190:intron | 30.0% | |
| TCTCAATACCAAATGCAATA+CGG | - | chr1_2:6376024-6376043 | Msa0052190:intron | 30.0% | |
| !! | AAACAAGACCTTTGAGATAA+CGG | + | chr1_2:6376230-6376249 | None:intergenic | 30.0% |
| ACAAAAACTTGGAAAAAGCA+TGG | + | chr1_2:6376293-6376312 | None:intergenic | 30.0% | |
| AACTTTGCAGTAATGTATTG+TGG | - | chr1_2:6376320-6376339 | Msa0052190:intron | 30.0% | |
| GTATTGTGGCTTATACTTAT+TGG | - | chr1_2:6376334-6376353 | Msa0052190:intron | 30.0% | |
| ACTTTCTATGGTTATCACAT+AGG | + | chr1_2:6376536-6376555 | None:intergenic | 30.0% | |
| ATTCTATGGTACACTTTCTA+TGG | + | chr1_2:6376548-6376567 | None:intergenic | 30.0% | |
| TAGCAAACAACGAAAAATTG+AGG | + | chr1_2:6376573-6376592 | None:intergenic | 30.0% | |
| ! | CTTTGTTGTACTACATAGTA+AGG | - | chr1_2:6376613-6376632 | Msa0052190:intron | 30.0% |
| !! | TAGTAAGGTGAAGTTGATAA+AGG | - | chr1_2:6376628-6376647 | Msa0052190:intron | 30.0% |
| !! | AGTAAGGTGAAGTTGATAAA+GGG | - | chr1_2:6376629-6376648 | Msa0052190:intron | 30.0% |
| !! | TAAACTAACAGCTTTGGAAT+CGG | + | chr1_2:6376729-6376748 | None:intergenic | 30.0% |
| TTATGCAAGATGAACACTAA+TGG | - | chr1_2:6376812-6376831 | Msa0052190:intron | 30.0% | |
| TATGCAAGATGAACACTAAT+GGG | - | chr1_2:6376813-6376832 | Msa0052190:intron | 30.0% | |
| TCTACCATCTAATCAACTTA+TGG | - | chr1_2:6376848-6376867 | Msa0052190:intron | 30.0% | |
| !! | TCTGACACCTTATCATTTTT+GGG | + | chr1_2:6376887-6376906 | None:intergenic | 30.0% |
| ! | TTCTGACACCTTATCATTTT+TGG | + | chr1_2:6376888-6376907 | None:intergenic | 30.0% |
| TAAAAGAGGGATAAAGAGAA+AGG | - | chr1_2:6376948-6376967 | Msa0052190:intron | 30.0% | |
| ATTATGTTATGTGCTCTTGT+AGG | + | chr1_2:6377052-6377071 | None:intergenic | 30.0% | |
| ! | TCTCGTTACTCTTTTTGAAT+AGG | + | chr1_2:6377237-6377256 | None:intergenic | 30.0% |
| CAAATATGTGTAGAAGAAAG+AGG | - | chr1_2:6377368-6377387 | Msa0052190:intron | 30.0% | |
| CTCCTATCACACTAATTTAT+CGG | - | chr1_2:6377458-6377477 | Msa0052190:CDS | 30.0% | |
| CCCAATGTTAAAATTGACAT+TGG | + | chr1_2:6377704-6377723 | None:intergenic | 30.0% | |
| ! | TTGTGATGATGTATCATGTA+TGG | + | chr1_2:6377778-6377797 | None:intergenic | 30.0% |
| !!! | GGTATTTTGACCATTATAGA+AGG | + | chr1_2:6378352-6378371 | None:intergenic | 30.0% |
| CTATAATGGTCAAAATACCA+TGG | - | chr1_2:6378353-6378372 | Msa0052190:intron | 30.0% | |
| TTAGATAAATTGGAGTGGTT+TGG | - | chr1_2:6378467-6378486 | Msa0052190:intron | 30.0% | |
| !!! | TTTTATTTTCCTCTTGTGGA+TGG | + | chr1_2:6378522-6378541 | None:intergenic | 30.0% |
| ! | ATTTACTGCTTCAGTTGTTT+TGG | - | chr1_2:6378577-6378596 | Msa0052190:five_prime_UTR | 30.0% |
| !!! | CTTTTGGGATTCATAAACAT+TGG | + | chr1_2:6378679-6378698 | None:intergenic | 30.0% |
| CAATGTTTATGAATCCCAAA+AGG | - | chr1_2:6378677-6378696 | Msa0052190:five_prime_UTR | 30.0% | |
| AAGCGGGTATAATAGGATTA+AGG | + | chr1_2:6374384-6374403 | None:intergenic | 35.0% | |
| !!! | TGTTGGTTTTGAGAATGAAG+CGG | + | chr1_2:6374401-6374420 | None:intergenic | 35.0% |
| !! | AAGAGTTCTGGTTAGTTTGT+TGG | + | chr1_2:6374418-6374437 | None:intergenic | 35.0% |
| !!! | AAGCGACCCATTTTAATTCA+TGG | - | chr1_2:6374624-6374643 | Msa0052190:intron | 35.0% |
| CTTGACGCCATGAATTAAAA+TGG | + | chr1_2:6374634-6374653 | None:intergenic | 35.0% | |
| TCTTCGGCAGCATTAAAAAA+TGG | + | chr1_2:6374679-6374698 | None:intergenic | 35.0% | |
| GAAGGATGGAATCTACATAT+AGG | - | chr1_2:6374998-6375017 | Msa0052190:intron | 35.0% | |
| TGGAATCTACATATAGGACA+TGG | - | chr1_2:6375004-6375023 | Msa0052190:intron | 35.0% | |
| AGAGATTTACTTACTACCCT+TGG | - | chr1_2:6375078-6375097 | Msa0052190:intron | 35.0% | |
| !!! | CTAGTGCTGATATTGGTTTT+TGG | - | chr1_2:6375551-6375570 | Msa0052190:intron | 35.0% |
| AAACTTGACACCTTATGCAT+TGG | + | chr1_2:6375640-6375659 | None:intergenic | 35.0% | |
| ! | CATAAGGTGTCAAGTTTATC+AGG | - | chr1_2:6375643-6375662 | Msa0052190:intron | 35.0% |
| AATACCAAATGCAATACGGT+CGG | - | chr1_2:6376028-6376047 | Msa0052190:intron | 35.0% | |
| ! | GTTTTTCTCCTTTGCTTGAT+TGG | - | chr1_2:6376075-6376094 | Msa0052190:intron | 35.0% |
| !! | TTTTAATTACACGTCACACG+AGG | - | chr1_2:6376368-6376387 | Msa0052190:intron | 35.0% |
| AAGAAATAGGACACTAACCT+AGG | + | chr1_2:6376511-6376530 | None:intergenic | 35.0% | |
| !! | GTAAGGTGAAGTTGATAAAG+GGG | - | chr1_2:6376630-6376649 | Msa0052190:intron | 35.0% |
| ACATGCTAAACTAACAGCTT+TGG | + | chr1_2:6376735-6376754 | None:intergenic | 35.0% | |
| TTCTGCTCAGCTCTTATTAA+CGG | - | chr1_2:6376784-6376803 | Msa0052190:intron | 35.0% | |
| ATGCAAGATGAACACTAATG+GGG | - | chr1_2:6376814-6376833 | Msa0052190:intron | 35.0% | |
| !! | GTGTCCATAAGTTGATTAGA+TGG | + | chr1_2:6376855-6376874 | None:intergenic | 35.0% |
| TAACTCGCCCAAAAATGATA+AGG | - | chr1_2:6376877-6376896 | Msa0052190:intron | 35.0% | |
| ACTCTTACACTGTTACACAT+TGG | - | chr1_2:6377336-6377355 | Msa0052190:intron | 35.0% | |
| TAAGAACTCATAAACCTGAG+AGG | + | chr1_2:6377438-6377457 | None:intergenic | 35.0% | |
| CTCCGATAAATTAGTGTGAT+AGG | + | chr1_2:6377463-6377482 | None:intergenic | 35.0% | |
| CTATCACACTAATTTATCGG+AGG | - | chr1_2:6377461-6377480 | Msa0052190:CDS | 35.0% | |
| GGTAGTTATGATGAAAGTAG+AGG | + | chr1_2:6378008-6378027 | None:intergenic | 35.0% | |
| CAGATGGAAAGATAATGTGA+AGG | + | chr1_2:6378114-6378133 | None:intergenic | 35.0% | |
| GTAAGTACATTAACACACTC+AGG | - | chr1_2:6378158-6378177 | Msa0052190:CDS | 35.0% | |
| ACAAAATAAGGTAACCGTGT+GGG | + | chr1_2:6378381-6378400 | None:intergenic | 35.0% | |
| AACAAAATAAGGTAACCGTG+TGG | + | chr1_2:6378382-6378401 | None:intergenic | 35.0% | |
| !!! | TGGATGGATATTGTTTTGGA+TGG | + | chr1_2:6378506-6378525 | None:intergenic | 35.0% |
| ! | CTTGTGGATGGATATTGTTT+TGG | + | chr1_2:6378510-6378529 | None:intergenic | 35.0% |
| AAACAATATCCATCCACAAG+AGG | - | chr1_2:6378510-6378529 | Msa0052190:CDS | 35.0% | |
| !!! | TGTTTTGGTTCTTCTTGTTG+TGG | - | chr1_2:6378592-6378611 | Msa0052190:five_prime_UTR | 35.0% |
| !!! | GTTTTGGTTCTTCTTGTTGT+GGG | - | chr1_2:6378593-6378612 | Msa0052190:five_prime_UTR | 35.0% |
| !!! | TTTTGGTTCTTCTTGTTGTG+GGG | - | chr1_2:6378594-6378613 | Msa0052190:five_prime_UTR | 35.0% |
| CACGGAAGGATTTCAATATT+GGG | + | chr1_2:6378849-6378868 | None:intergenic | 35.0% | |
| TCACGGAAGGATTTCAATAT+TGG | + | chr1_2:6378850-6378869 | None:intergenic | 35.0% | |
| GAGAATGAAGCGGGTATAAT+AGG | + | chr1_2:6374391-6374410 | None:intergenic | 40.0% | |
| !!! | GTTGGTTTTGAGAATGAAGC+GGG | + | chr1_2:6374400-6374419 | None:intergenic | 40.0% |
| ACTAACCAGAACTCTTCTCT+CGG | - | chr1_2:6374422-6374441 | Msa0052190:intron | 40.0% | |
| TGCAGATTCCTGAACTTCTT+CGG | + | chr1_2:6374695-6374714 | None:intergenic | 40.0% | |
| AAGTTCAGGAATCTGCAGAT+AGG | - | chr1_2:6374698-6374717 | Msa0052190:intron | 40.0% | |
| !!! | CATGCTGGAAGTATTTTTGG+TGG | + | chr1_2:6375037-6375056 | None:intergenic | 40.0% |
| !!! | CCACATGCTGGAAGTATTTT+TGG | + | chr1_2:6375040-6375059 | None:intergenic | 40.0% |
| CCAAAAATACTTCCAGCATG+TGG | - | chr1_2:6375037-6375056 | Msa0052190:intron | 40.0% | |
| AGGAATTTGAACGCGAAGTT+AGG | - | chr1_2:6375224-6375243 | Msa0052190:intron | 40.0% | |
| !! | TAGAAAGGCATCTCAGACAT+GGG | - | chr1_2:6375366-6375385 | Msa0052190:intron | 40.0% |
| !! | CGAGCTTGCTTTGTTTCTTT+CGG | - | chr1_2:6375414-6375433 | Msa0052190:intron | 40.0% |
| !! | GAGCTTGCTTTGTTTCTTTC+GGG | - | chr1_2:6375415-6375434 | Msa0052190:intron | 40.0% |
| ! | TTTGTTTCTTTCGGGAATGC+CGG | - | chr1_2:6375423-6375442 | Msa0052190:intron | 40.0% |
| AATTCAGTTGCATCTGGTGT+TGG | - | chr1_2:6375481-6375500 | Msa0052190:intron | 40.0% | |
| ATTCAGTTGCATCTGGTGTT+GGG | - | chr1_2:6375482-6375501 | Msa0052190:intron | 40.0% | |
| TGGTCCAAATCCAATGCATA+AGG | - | chr1_2:6375627-6375646 | Msa0052190:intron | 40.0% | |
| GACACCTTATGCATTGGATT+TGG | + | chr1_2:6375634-6375653 | None:intergenic | 40.0% | |
| ATCAGGATTTCTTAGTTCCG+TGG | - | chr1_2:6375660-6375679 | Msa0052190:intron | 40.0% | |
| ! | TGATGGTGCACTAATTCCAA+TGG | - | chr1_2:6375756-6375775 | Msa0052190:intron | 40.0% |
| TTCCAATGGCTGAATTGAAC+AGG | - | chr1_2:6375770-6375789 | Msa0052190:intron | 40.0% | |
| TCCAATGGCTGAATTGAACA+GGG | - | chr1_2:6375771-6375790 | Msa0052190:intron | 40.0% | |
| ATCGTTGAAACTTCGTTGTG+TGG | - | chr1_2:6375826-6375845 | Msa0052190:intron | 40.0% | |
| AGCATTCATCAGAACTATCG+AGG | + | chr1_2:6375951-6375970 | None:intergenic | 40.0% | |
| TGCTATGACAAGCATCTCTA+TGG | - | chr1_2:6375967-6375986 | Msa0052190:intron | 40.0% | |
| ATGACAAGCATCTCTATGGA+TGG | - | chr1_2:6375971-6375990 | Msa0052190:intron | 40.0% | |
| CCTTTGCTTGATTGGTAAGT+CGG | - | chr1_2:6376083-6376102 | Msa0052190:intron | 40.0% | |
| GCAAGTAAATGCAAGTGTGT+CGG | + | chr1_2:6376131-6376150 | None:intergenic | 40.0% | |
| GCGACACTGCTAATGTAATA+AGG | + | chr1_2:6376208-6376227 | None:intergenic | 40.0% | |
| AGCATGGATGAATAGTGAGT+GGG | + | chr1_2:6376277-6376296 | None:intergenic | 40.0% | |
| AAGCATGGATGAATAGTGAG+TGG | + | chr1_2:6376278-6376297 | None:intergenic | 40.0% | |
| CAGAGAAGAGAAGACAGAAA+CGG | - | chr1_2:6377019-6377038 | Msa0052190:intron | 40.0% | |
| ! | CTTTTGAGCAACTTGAGAGA+CGG | + | chr1_2:6377415-6377434 | None:intergenic | 40.0% |
| CCGATCTAAAAACAACGATC+GGG | + | chr1_2:6377493-6377512 | None:intergenic | 40.0% | |
| !!! | CCCGATCGTTGTTTTTAGAT+CGG | - | chr1_2:6377490-6377509 | Msa0052190:CDS | 40.0% |
| CCCGATCTAAAAACAACGAT+CGG | + | chr1_2:6377494-6377513 | None:intergenic | 40.0% | |
| !!! | CCGATCGTTGTTTTTAGATC+GGG | - | chr1_2:6377491-6377510 | Msa0052190:CDS | 40.0% |
| TCAAAGGCTTAGTAACTTCG+AGG | - | chr1_2:6377538-6377557 | Msa0052190:CDS | 40.0% | |
| CAAAGGCTTAGTAACTTCGA+GGG | - | chr1_2:6377539-6377558 | Msa0052190:CDS | 40.0% | |
| CACAATTCGCAGTAGTGATA+TGG | - | chr1_2:6377645-6377664 | Msa0052190:CDS | 40.0% | |
| !! | TGGGATGCTCTAAGATTTCA+AGG | - | chr1_2:6377720-6377739 | Msa0052190:CDS | 40.0% |
| AACATGGGTTCTTGGAACTT+AGG | + | chr1_2:6377955-6377974 | None:intergenic | 40.0% | |
| TGAACAGAACCAAGGAACAT+GGG | + | chr1_2:6377970-6377989 | None:intergenic | 40.0% | |
| ATGAACAGAACCAAGGAACA+TGG | + | chr1_2:6377971-6377990 | None:intergenic | 40.0% | |
| GGATAGTATGAACAGAACCA+AGG | + | chr1_2:6377978-6377997 | None:intergenic | 40.0% | |
| ! | TGTTAGCAACTGGTTAGTTG+TGG | + | chr1_2:6378029-6378048 | None:intergenic | 40.0% |
| AGCTTGAAGATGTTAGCAAC+TGG | + | chr1_2:6378039-6378058 | None:intergenic | 40.0% | |
| GCTAACATCTTCAAGCTTAG+TGG | - | chr1_2:6378042-6378061 | Msa0052190:intron | 40.0% | |
| AAAATACCATGGTTCCCACA+CGG | - | chr1_2:6378364-6378383 | Msa0052190:intron | 40.0% | |
| !! | CTTGTTGTGGGGATTTTGAA+TGG | - | chr1_2:6378605-6378624 | Msa0052190:five_prime_UTR | 40.0% |
| TTTGAATGGCTATAGTGCTG+AGG | - | chr1_2:6378619-6378638 | Msa0052190:five_prime_UTR | 40.0% | |
| ! | TTGAATGGCTATAGTGCTGA+GGG | - | chr1_2:6378620-6378639 | Msa0052190:five_prime_UTR | 40.0% |
| !! | AGATCCTTATTAGGTTGAGG+AGG | + | chr1_2:6378798-6378817 | None:intergenic | 40.0% |
| ! | TGGAGATCCTTATTAGGTTG+AGG | + | chr1_2:6378801-6378820 | None:intergenic | 40.0% |
| !! | GTGGATTGGAGATCCTTATT+AGG | + | chr1_2:6378807-6378826 | None:intergenic | 40.0% |
| !! | ATTACCACTTTTAGCTGTGG+TGG | + | chr1_2:6378826-6378845 | None:intergenic | 40.0% |
| TAGATCCGAGAGAAGAGTTC+TGG | + | chr1_2:6374430-6374449 | None:intergenic | 45.0% | |
| TCATGGCGTCAAGTCTTGAT+CGG | - | chr1_2:6374641-6374660 | Msa0052190:intron | 45.0% | |
| TAATGCTGCCGAAGAAGTTC+AGG | - | chr1_2:6374684-6374703 | Msa0052190:intron | 45.0% | |
| TTCATTAGGGTTCCACATGC+TGG | + | chr1_2:6375052-6375071 | None:intergenic | 45.0% | |
| TTGGTGGGATATGCAGTTAG+AGG | - | chr1_2:6375204-6375223 | Msa0052190:intron | 45.0% | |
| TTAGATGAAACGAACCCTCC+AGG | - | chr1_2:6375343-6375362 | Msa0052190:intron | 45.0% | |
| !! | GTAGAAAGGCATCTCAGACA+TGG | - | chr1_2:6375365-6375384 | Msa0052190:intron | 45.0% |
| ! | ATCTCAGACATGGGTGGTTT+TGG | - | chr1_2:6375375-6375394 | Msa0052190:intron | 45.0% |
| ! | TTCAGTTGCATCTGGTGTTG+GGG | - | chr1_2:6375483-6375502 | Msa0052190:intron | 45.0% |
| ! | ATCTGGTGTTGGGGAAGAAA+AGG | - | chr1_2:6375492-6375511 | Msa0052190:intron | 45.0% |
| !! | AAAAGGAGGAGGTATCACGT+GGG | - | chr1_2:6375509-6375528 | Msa0052190:intron | 45.0% |
| TTTCGAAATTGAAGTGGCCG+AGG | - | chr1_2:6375689-6375708 | Msa0052190:intron | 45.0% | |
| AAATTGAAGTGGCCGAGGAA+TGG | - | chr1_2:6375694-6375713 | Msa0052190:intron | 45.0% | |
| ACCCTGTTCAATTCAGCCAT+TGG | + | chr1_2:6375775-6375794 | None:intergenic | 45.0% | |
| AAGCATCTCTATGGATGGTG+TGG | - | chr1_2:6375976-6375995 | Msa0052190:intron | 45.0% | |
| CCGACTTACCAATCAAGCAA+AGG | + | chr1_2:6376086-6376105 | None:intergenic | 45.0% | |
| !! | TTGTAGCTTGCTGCAGCATT+AGG | - | chr1_2:6376431-6376450 | Msa0052190:intron | 45.0% |
| AAGTTGCTCAAAAGCCTCTC+AGG | - | chr1_2:6377421-6377440 | Msa0052190:intron | 45.0% | |
| GAGGGCGGAAAATATGAAGT+GGG | - | chr1_2:6377557-6377576 | Msa0052190:CDS | 45.0% | |
| TCATGTATGGACTCTGAACC+AGG | + | chr1_2:6377765-6377784 | None:intergenic | 45.0% | |
| TTCCAAGAACCCATGTTCCT+TGG | - | chr1_2:6377958-6377977 | Msa0052190:CDS | 45.0% | |
| AACCAAGGAACATGGGTTCT+TGG | + | chr1_2:6377963-6377982 | None:intergenic | 45.0% | |
| GATGAAAGTAGAGGTCATGC+TGG | + | chr1_2:6377999-6378018 | None:intergenic | 45.0% | |
| GAAGGATAAGAGTGACGTGT+GGG | + | chr1_2:6378096-6378115 | None:intergenic | 45.0% | |
| TGAAGGATAAGAGTGACGTG+TGG | + | chr1_2:6378097-6378116 | None:intergenic | 45.0% | |
| ! | TTTTGCCACAACGAACAACC+TGG | + | chr1_2:6378723-6378742 | None:intergenic | 45.0% |
| CTGTCCTCCTCAACCTAATA+AGG | - | chr1_2:6378791-6378810 | Msa0052190:five_prime_UTR | 45.0% | |
| !!! | CACTTTTAGCTGTGGTGGAT+TGG | + | chr1_2:6378821-6378840 | None:intergenic | 45.0% |
| CAATCCACCACAGCTAAAAG+TGG | - | chr1_2:6378819-6378838 | Msa0052190:five_prime_UTR | 45.0% | |
| !! | GGGATTACCACTTTTAGCTG+TGG | + | chr1_2:6378829-6378848 | None:intergenic | 45.0% |
| !!! | TTTTATTTTTTATTGAAAAA+AGG | - | chr1_2:6375891-6375910 | Msa0052190:intron | 5.0% |
| !!! | TTTATTTTTTATTGAAAAAA+GGG | - | chr1_2:6375892-6375911 | Msa0052190:intron | 5.0% |
| !!! | AAAATATTTTTAACAAAATA+AGG | + | chr1_2:6378393-6378412 | None:intergenic | 5.0% |
| CTACCCTTGGCACTGCTAAA+TGG | - | chr1_2:6375091-6375110 | Msa0052190:intron | 50.0% | |
| ! | CTGCCATTTAGCAGTGCCAA+GGG | + | chr1_2:6375097-6375116 | None:intergenic | 50.0% |
| TGGGCGATGATGCAAGAACT+AGG | - | chr1_2:6375266-6375285 | Msa0052190:intron | 50.0% | |
| AACGAACCCTCCAGGTAGAA+AGG | - | chr1_2:6375351-6375370 | Msa0052190:intron | 50.0% | |
| GAGATGCCTTTCTACCTGGA+GGG | + | chr1_2:6375360-6375379 | None:intergenic | 50.0% | |
| TGAGATGCCTTTCTACCTGG+AGG | + | chr1_2:6375361-6375380 | None:intergenic | 50.0% | |
| ! | GTCTGAGATGCCTTTCTACC+TGG | + | chr1_2:6375364-6375383 | None:intergenic | 50.0% |
| !! | AAAGGCATCTCAGACATGGG+TGG | - | chr1_2:6375369-6375388 | Msa0052190:intron | 50.0% |
| !!! | ACATGGGTGGTTTTGGACGA+AGG | - | chr1_2:6375382-6375401 | Msa0052190:intron | 50.0% |
| ! | TGGTGTTGGGGAAGAAAAGG+AGG | - | chr1_2:6375495-6375514 | Msa0052190:intron | 50.0% |
| TGTTGGGGAAGAAAAGGAGG+AGG | - | chr1_2:6375498-6375517 | Msa0052190:intron | 50.0% | |
| !! | GAAAAGGAGGAGGTATCACG+TGG | - | chr1_2:6375508-6375527 | Msa0052190:intron | 50.0% |
| !! | GCTAGCGCTAGTGCTGATAT+TGG | - | chr1_2:6375544-6375563 | Msa0052190:intron | 50.0% |
| ATTTGGACCAGAAGAACCGC+TGG | + | chr1_2:6375617-6375636 | None:intergenic | 50.0% | |
| CAGTGTCGCCGTTATCTCAA+AGG | - | chr1_2:6376219-6376238 | Msa0052190:intron | 50.0% | |
| TACACGTCACACGAGGTAGA+AGG | - | chr1_2:6376375-6376394 | Msa0052190:intron | 50.0% | |
| AGGCTTAGTAACTTCGAGGG+CGG | - | chr1_2:6377542-6377561 | Msa0052190:CDS | 50.0% | |
| CGAGGGCGGAAAATATGAAG+TGG | - | chr1_2:6377556-6377575 | Msa0052190:CDS | 50.0% | |
| CACAACGAACAACCTGGCAT+CGG | + | chr1_2:6378717-6378736 | None:intergenic | 50.0% | |
| TTTCCTGACGATTGTCCTCC+AGG | - | chr1_2:6378756-6378775 | Msa0052190:five_prime_UTR | 50.0% | |
| TGGCGTCAAGTCTTGATCGG+TGG | - | chr1_2:6374644-6374663 | Msa0052190:intron | 55.0% | |
| GGCGTCAAGTCTTGATCGGT+GGG | - | chr1_2:6374645-6374664 | Msa0052190:intron | 55.0% | |
| ! | CCTGCCATTTAGCAGTGCCA+AGG | + | chr1_2:6375098-6375117 | None:intergenic | 55.0% |
| CCTTGGCACTGCTAAATGGC+AGG | - | chr1_2:6375095-6375114 | Msa0052190:intron | 55.0% | |
| !! | GGGTTGTTGCTTTCAGCTGC+CGG | + | chr1_2:6375445-6375464 | None:intergenic | 55.0% |
| ! | AGGTATCACGTGGGCATCGT+AGG | - | chr1_2:6375518-6375537 | Msa0052190:intron | 55.0% |
| ! | GGTATCACGTGGGCATCGTA+GGG | - | chr1_2:6375519-6375538 | Msa0052190:intron | 55.0% |
| CTGGAGGAACTAGACTGCTG+CGG | + | chr1_2:6375598-6375617 | None:intergenic | 55.0% | |
| ! | CAGCAGTCTAGTTCCTCCAG+CGG | - | chr1_2:6375598-6375617 | Msa0052190:intron | 55.0% |
| AGTTCCTCCAGCGGTTCTTC+TGG | - | chr1_2:6375607-6375626 | Msa0052190:intron | 55.0% | |
| CAGGCCGACCGTATTGCATT+TGG | + | chr1_2:6376035-6376054 | None:intergenic | 55.0% | |
| AGGTAACCGTGTGGGAACCA+TGG | + | chr1_2:6378373-6378392 | None:intergenic | 55.0% | |
| ! | AACGAACAACCTGGCATCGG+CGG | + | chr1_2:6378714-6378733 | None:intergenic | 55.0% |
| CGATGCCAGGTTGTTCGTTG+TGG | - | chr1_2:6378715-6378734 | Msa0052190:five_prime_UTR | 55.0% | |
| TAGCCTGGAGGACAATCGTC+AGG | + | chr1_2:6378762-6378781 | None:intergenic | 55.0% | |
| ! | GTTGAGGAGGACAGTGCTGA+TGG | + | chr1_2:6378785-6378804 | None:intergenic | 55.0% |
| TGGACCAGAAGAACCGCTGG+AGG | + | chr1_2:6375614-6375633 | None:intergenic | 60.0% | |
| ! | GGCTATAGTGCTGAGGGTGC+AGG | - | chr1_2:6378626-6378645 | Msa0052190:five_prime_UTR | 60.0% |
| ! | AGTGCTGAGGGTGCAGGAAG+AGG | - | chr1_2:6378632-6378651 | Msa0052190:five_prime_UTR | 60.0% |
| ! | CGGCGGCGAGAACACCTTTT+GGG | + | chr1_2:6378694-6378713 | None:intergenic | 60.0% |
| !! | CAGTGCTGATGGTAGCCTGG+AGG | + | chr1_2:6378774-6378793 | None:intergenic | 60.0% |
| !! | GGACAGTGCTGATGGTAGCC+TGG | + | chr1_2:6378777-6378796 | None:intergenic | 60.0% |
| ! | GCGGCGGCGAGAACACCTTT+TGG | + | chr1_2:6378695-6378714 | None:intergenic | 65.0% |
| !! | GAACAACCTGGCATCGGCGG+CGG | + | chr1_2:6378711-6378730 | None:intergenic | 65.0% |
| TTCTCGCCGCCGCCGATGCC+AGG | - | chr1_2:6378702-6378721 | Msa0052190:five_prime_UTR | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 6374347 | 6378869 | 6374347 | ID=Msa0052190;Name=Msa0052190 |
| chr1_2 | mRNA | 6374347 | 6378869 | 6374347 | ID=Msa0052190-mRNA-1;Parent=Msa0052190;Name=Msa0052190-mRNA-1;_AED=0.27;_eAED=0.27;_QI=296|0.6|0.66|1|1|1|6|0|367 |
| chr1_2 | exon | 6374347 | 6374438 | 6374347 | ID=Msa0052190-mRNA-1:exon:2071;Parent=Msa0052190-mRNA-1 |
| chr1_2 | exon | 6374563 | 6374625 | 6374563 | ID=Msa0052190-mRNA-1:exon:2070;Parent=Msa0052190-mRNA-1 |
| chr1_2 | exon | 6377120 | 6377303 | 6377120 | ID=Msa0052190-mRNA-1:exon:2069;Parent=Msa0052190-mRNA-1 |
| chr1_2 | exon | 6377424 | 6377996 | 6377424 | ID=Msa0052190-mRNA-1:exon:2068;Parent=Msa0052190-mRNA-1 |
| chr1_2 | exon | 6378100 | 6378214 | 6378100 | ID=Msa0052190-mRNA-1:exon:2067;Parent=Msa0052190-mRNA-1 |
| chr1_2 | exon | 6378497 | 6378869 | 6378497 | ID=Msa0052190-mRNA-1:exon:2066;Parent=Msa0052190-mRNA-1 |
| chr1_2 | five_prime_UTR | 6378574 | 6378869 | 6378574 | ID=Msa0052190-mRNA-1:five_prime_utr;Parent=Msa0052190-mRNA-1 |
| chr1_2 | CDS | 6378497 | 6378573 | 6378497 | ID=Msa0052190-mRNA-1:cds;Parent=Msa0052190-mRNA-1 |
| chr1_2 | CDS | 6378100 | 6378214 | 6378100 | ID=Msa0052190-mRNA-1:cds;Parent=Msa0052190-mRNA-1 |
| chr1_2 | CDS | 6377424 | 6377996 | 6377424 | ID=Msa0052190-mRNA-1:cds;Parent=Msa0052190-mRNA-1 |
| chr1_2 | CDS | 6377120 | 6377303 | 6377120 | ID=Msa0052190-mRNA-1:cds;Parent=Msa0052190-mRNA-1 |
| chr1_2 | CDS | 6374563 | 6374625 | 6374563 | ID=Msa0052190-mRNA-1:cds;Parent=Msa0052190-mRNA-1 |
| chr1_2 | CDS | 6374347 | 6374438 | 6374347 | ID=Msa0052190-mRNA-1:cds;Parent=Msa0052190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
