Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0018120 | Msa0052190 | 0.894766 | 1.810460e-75 | -8.615850e-47 |
| Msa0018120 | Msa0097230 | 0.990511 | 5.528921e-183 | -8.615850e-47 |
| Msa0018120 | Msa0097320 | 0.911504 | 5.641460e-83 | -8.615850e-47 |
| Msa0018120 | Msa0968150 | 0.868180 | 7.906345e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0018120 | MtrunA17_Chr1g0152781 | 96.573 | 321 | 11 | 0 | 1 | 321 | 1 | 321 | 0.0 | 647 |
| Msa0018120 | MtrunA17_Chr3g0134601 | 59.118 | 340 | 114 | 6 | 1 | 324 | 1 | 331 | 1.86e-127 | 370 |
| Msa0018120 | MtrunA17_Chr4g0072471 | 57.971 | 138 | 56 | 2 | 1 | 137 | 3 | 139 | 7.05e-40 | 145 |
| Msa0018120 | MtrunA17_Chr1g0152821 | 66.327 | 98 | 25 | 4 | 317 | 408 | 8 | 103 | 6.11e-31 | 114 |
| Msa0018120 | MtrunA17_Chr8g0340221 | 52.113 | 71 | 27 | 2 | 318 | 388 | 9 | 72 | 6.18e-15 | 71.2 |
| Msa0018120 | MtrunA17_Chr8g0376941 | 43.137 | 102 | 38 | 3 | 317 | 403 | 8 | 104 | 4.77e-13 | 65.1 |
| Msa0018120 | MtrunA17_Chr8g0340241 | 43.210 | 81 | 41 | 4 | 318 | 394 | 10 | 89 | 2.14e-11 | 60.1 |
| Msa0018120 | MtrunA17_Chr8g0339001 | 56.897 | 58 | 21 | 2 | 317 | 373 | 8 | 62 | 6.56e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0018120 | AT1G27700.1 | 44.237 | 321 | 152 | 4 | 1 | 321 | 1 | 294 | 7.75e-88 | 268 |
| Msa0018120 | AT2G18860.3 | 50.000 | 138 | 60 | 2 | 1 | 137 | 3 | 132 | 2.16e-34 | 129 |
| Msa0018120 | AT2G18860.1 | 50.000 | 138 | 60 | 2 | 1 | 137 | 3 | 132 | 4.84e-34 | 129 |
| Msa0018120 | AT4G30240.1 | 39.823 | 226 | 122 | 6 | 1 | 218 | 3 | 222 | 7.74e-34 | 128 |
| Msa0018120 | AT2G18860.2 | 48.673 | 113 | 49 | 2 | 26 | 137 | 9 | 113 | 8.63e-24 | 100 |
Find 110 sgRNAs with CRISPR-Local
Find 273 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAAAATTGATGAAAATT+TGG | 0.141221 | 1_1:+30230361 | None:intergenic |
| CTTGACGCCATGAATTAAAA+TGG | 0.192881 | 1_1:+30230326 | None:intergenic |
| TCACGGAAGGATTTCAATAT+TGG | 0.201564 | 1_1:+30226131 | None:intergenic |
| GAGCTTGCTTTGTTTCTTTC+GGG | 0.219757 | 1_1:-30229542 | Msa0018120:CDS |
| CGAGCTTGCTTTGTTTCTTT+CGG | 0.245739 | 1_1:-30229543 | Msa0018120:CDS |
| AAATCTCTTCTAAGTTCATT+AGG | 0.250806 | 1_1:+30229894 | None:intergenic |
| CATAAGGTGCCAAGTTTATC+AGG | 0.253350 | 1_1:-30229314 | Msa0018120:CDS |
| GAGAATGAAGCGGGTATAAT+AGG | 0.277243 | 1_1:+30230569 | None:intergenic |
| ATTTACTGCTTCAGTTGTTT+TGG | 0.278796 | 1_1:-30226400 | Msa0018120:intron |
| ATCTCAGACATGGGTGGTTT+TGG | 0.291220 | 1_1:-30229582 | Msa0018120:CDS |
| CTACCCTTGGCACTGCTAAA+TGG | 0.295554 | 1_1:-30229866 | Msa0018120:CDS |
| CTGTCCTCCTCAACCTAATA+AGG | 0.302107 | 1_1:-30226187 | Msa0018120:CDS |
| GGCACCTTATGCATTGGATT+TGG | 0.302310 | 1_1:+30229326 | None:intergenic |
| CACGGAAGGATTTCAATATT+GGG | 0.315267 | 1_1:+30226132 | None:intergenic |
| TGCTATGACAAGCATCTCTA+TGG | 0.338103 | 1_1:-30228990 | Msa0018120:CDS |
| AGTTCCTCCAGCGGTTCTTC+TGG | 0.341641 | 1_1:-30229350 | Msa0018120:CDS |
| AATCTCTTCTAAGTTCATTA+GGG | 0.345075 | 1_1:+30229895 | None:intergenic |
| ATTCAGTTGCATCTGGTGTT+GGG | 0.352535 | 1_1:-30229475 | Msa0018120:CDS |
| TAATGCTGCCGAAGAAGTTC+AGG | 0.352747 | 1_1:-30230273 | Msa0018120:CDS |
| GCGGCGGCGAGAACACCTTT+TGG | 0.356785 | 1_1:+30226286 | None:intergenic |
| GTGGATTGGAGATCCTTATT+AGG | 0.363498 | 1_1:+30226174 | None:intergenic |
| AAGAGTTCTGGTTAGTTTGT+TGG | 0.366295 | 1_1:+30230542 | None:intergenic |
| TTCCAATGGCTGAATTGAAC+AGG | 0.368336 | 1_1:-30229187 | Msa0018120:CDS |
| AGGAATTTGAACGCGAAGTT+AGG | 0.368679 | 1_1:-30229733 | Msa0018120:CDS |
| AAGCGGGTATAATAGGATTA+AGG | 0.371922 | 1_1:+30230576 | None:intergenic |
| TTCTCGCCGCCGCCGATGCC+AGG | 0.396969 | 1_1:-30226276 | Msa0018120:CDS |
| GGGTTGTTGCTTTCAGCTGC+CGG | 0.409203 | 1_1:+30229515 | None:intergenic |
| TTTCCTGACGATTGTCCTCC+AGG | 0.412015 | 1_1:-30226222 | Msa0018120:CDS |
| TTCATTAGGGTTCCACATGC+TGG | 0.412123 | 1_1:+30229908 | None:intergenic |
| GTCTGAGATGCCTTTCTACC+TGG | 0.425960 | 1_1:+30229596 | None:intergenic |
| AAAATTGAATAACATTAAGT+TGG | 0.426618 | 1_1:+30230461 | None:intergenic |
| TAGATCCGAGAGAAGAGTTC+TGG | 0.426631 | 1_1:+30230530 | None:intergenic |
| ATTGAAACAATTATTCGAAC+AGG | 0.428378 | 1_1:+30228906 | None:intergenic |
| GCTAGCGCTAGTGCTGATAT+TGG | 0.431805 | 1_1:-30229413 | Msa0018120:CDS |
| TGGAGATCCTTATTAGGTTG+AGG | 0.434955 | 1_1:+30226180 | None:intergenic |
| CAGGCCGACTGTATTGCATT+TGG | 0.439081 | 1_1:+30228925 | None:intergenic |
| TGCAGATTCCTGAACTTCTT+CGG | 0.440150 | 1_1:+30230265 | None:intergenic |
| AATTCAGTTGCATCTGGTGT+TGG | 0.446579 | 1_1:-30229476 | Msa0018120:CDS |
| AAACTTGGCACCTTATGCAT+TGG | 0.454157 | 1_1:+30229320 | None:intergenic |
| ATCTGGTGTTGGGGAAGAAA+AGG | 0.470868 | 1_1:-30229465 | Msa0018120:CDS |
| GGCTATAGTGCTGAGGGTGC+AGG | 0.475463 | 1_1:-30226351 | Msa0018120:CDS |
| ATTGAATAACATTAAGTTGG+TGG | 0.479527 | 1_1:+30230464 | None:intergenic |
| CTAAGAAATCCTGATAAACT+TGG | 0.485157 | 1_1:+30229305 | None:intergenic |
| AGGTATCACGTGGGCATCGT+AGG | 0.488724 | 1_1:-30229439 | Msa0018120:CDS |
| GAAGGATGGAATCTACATAT+AGG | 0.489714 | 1_1:-30229959 | Msa0018120:intron |
| ACCCTGTTCAATTCAGCCAT+TGG | 0.493805 | 1_1:+30229185 | None:intergenic |
| TTTGTTTCTTTCGGGAATGC+CGG | 0.494226 | 1_1:-30229534 | Msa0018120:CDS |
| TTGAATAACATTAAGTTGGT+GGG | 0.502002 | 1_1:+30230465 | None:intergenic |
| AGAGATTTACTTACTACCCT+TGG | 0.502779 | 1_1:-30229879 | Msa0018120:CDS |
| TGGTCCAAATCCAATGCATA+AGG | 0.505191 | 1_1:-30229330 | Msa0018120:CDS |
| CAATTTCGAAATTGATTCCA+CGG | 0.510644 | 1_1:+30229280 | None:intergenic |
| AACGAACCCTCCAGGTAGAA+AGG | 0.511463 | 1_1:-30229606 | Msa0018120:CDS |
| AGTGCTGAGGGTGCAGGAAG+AGG | 0.514309 | 1_1:-30226345 | Msa0018120:CDS |
| GAACAACCTGGCATCGGCGG+CGG | 0.521643 | 1_1:+30226270 | None:intergenic |
| GGACAGTGCTGATGGTAGCC+TGG | 0.521791 | 1_1:+30226204 | None:intergenic |
| AACGAACAACCTGGCATCGG+CGG | 0.525310 | 1_1:+30226267 | None:intergenic |
| GTTAAGTTATAACAGAGACT+TGG | 0.526567 | 1_1:-30229711 | Msa0018120:CDS |
| AAGTTCAGGAATCTGCAGAT+AGG | 0.528981 | 1_1:-30230259 | Msa0018120:intron |
| TTGACGCCATGAATTAAAAT+GGG | 0.533105 | 1_1:+30230327 | None:intergenic |
| TAGCCTGGAGGACAATCGTC+AGG | 0.534529 | 1_1:+30226219 | None:intergenic |
| TAGAAAGGCATCTCAGACAT+GGG | 0.536615 | 1_1:-30229591 | Msa0018120:CDS |
| GGCGTCAAGTCTTGATCGGT+GGG | 0.538666 | 1_1:-30230312 | Msa0018120:CDS |
| CCATGTTTATGAATCCCAAA+AGG | 0.538987 | 1_1:-30226301 | Msa0018120:CDS |
| CGATGCCAGGTTGTTCGTTG+TGG | 0.545533 | 1_1:-30226263 | Msa0018120:CDS |
| TTCAGTTGCATCTGGTGTTG+GGG | 0.546134 | 1_1:-30229474 | Msa0018120:CDS |
| ATCAGGATTTCTTAGTTCCG+TGG | 0.546937 | 1_1:-30229297 | Msa0018120:CDS |
| CAATCCACCACAGCTAAAAG+TGG | 0.547338 | 1_1:-30226159 | Msa0018120:CDS |
| TTTCGAAATTGAAGTGGCCG+AGG | 0.547944 | 1_1:-30229268 | Msa0018120:CDS |
| TTAGATGAAACGAACCCTCC+AGG | 0.548770 | 1_1:-30229614 | Msa0018120:CDS |
| TGGGCGATGATGCAAGAACT+AGG | 0.548917 | 1_1:-30229691 | Msa0018120:CDS |
| AAATTGAAGTGGCCGAGGAA+TGG | 0.551739 | 1_1:-30229263 | Msa0018120:CDS |
| CCTTGGCACTGCTAAATGGC+AGG | 0.552190 | 1_1:-30229862 | Msa0018120:intron |
| CACAACGAACAACCTGGCAT+CGG | 0.555866 | 1_1:+30226264 | None:intergenic |
| TTAAGTTATAACAGAGACTT+GGG | 0.559421 | 1_1:-30229710 | Msa0018120:CDS |
| ATTTGGACCAGAAGAACCGC+TGG | 0.562407 | 1_1:+30229343 | None:intergenic |
| GAGATGCCTTTCTACCTGGA+GGG | 0.562553 | 1_1:+30229600 | None:intergenic |
| GGTATCACGTGGGCATCGTA+GGG | 0.569652 | 1_1:-30229438 | Msa0018120:CDS |
| CTGCCATTTAGCAGTGCCAA+GGG | 0.578353 | 1_1:+30229863 | None:intergenic |
| TGAGATGCCTTTCTACCTGG+AGG | 0.581106 | 1_1:+30229599 | None:intergenic |
| GTTGAGGAGGACAGTGCTGA+TGG | 0.584018 | 1_1:+30226196 | None:intergenic |
| GTAGAAAGGCATCTCAGACA+TGG | 0.584968 | 1_1:-30229592 | Msa0018120:CDS |
| ACTAACCAGAACTCTTCTCT+CGG | 0.593288 | 1_1:-30230535 | Msa0018120:five_prime_UTR |
| CCTGCCATTTAGCAGTGCCA+AGG | 0.595735 | 1_1:+30229862 | None:intergenic |
| AATCAATTTCGAAATTGAAG+TGG | 0.596466 | 1_1:-30229274 | Msa0018120:CDS |
| TGGCGTCAAGTCTTGATCGG+TGG | 0.597897 | 1_1:-30230313 | Msa0018120:CDS |
| AGATCCTTATTAGGTTGAGG+AGG | 0.599142 | 1_1:+30226183 | None:intergenic |
| TCATGGCGTCAAGTCTTGAT+CGG | 0.599437 | 1_1:-30230316 | Msa0018120:CDS |
| TTACGCCACAACGAACAACC+TGG | 0.600737 | 1_1:+30226258 | None:intergenic |
| TGGTGTTGGGGAAGAAAAGG+AGG | 0.605467 | 1_1:-30229462 | Msa0018120:CDS |
| GATCATCATAAAGAAACTGA+TGG | 0.606309 | 1_1:-30229218 | Msa0018120:CDS |
| TTGAATGGCTATAGTGCTGA+GGG | 0.623017 | 1_1:-30226357 | Msa0018120:CDS |
| CCACAATCTCTCATCACGGA+AGG | 0.627674 | 1_1:+30226118 | None:intergenic |
| TGGAATCTACATATAGGACA+TGG | 0.629104 | 1_1:-30229953 | Msa0018120:CDS |
| ATGACAAGCATCTCTATGGA+TGG | 0.634464 | 1_1:-30228986 | Msa0018120:CDS |
| TGATGGTGCACTAATTCCAA+TGG | 0.646457 | 1_1:-30229201 | Msa0018120:CDS |
| AAGCATCTCTATGGATGGTG+TGG | 0.646497 | 1_1:-30228981 | Msa0018120:CDS |
| CCGACTTACCAATCAAGCAA+AGG | 0.648466 | 1_1:+30228874 | None:intergenic |
| TGTTGGGGAAGAAAAGGAGG+AGG | 0.649476 | 1_1:-30229459 | Msa0018120:CDS |
| AATACCAAATGCAATACAGT+CGG | 0.650211 | 1_1:-30228929 | Msa0018120:CDS |
| TCCAATGGCTGAATTGAACA+GGG | 0.653838 | 1_1:-30229186 | Msa0018120:intron |
| AGCATTCATCAGAACTATCG+AGG | 0.656054 | 1_1:+30229009 | None:intergenic |
| TTTGAATGGCTATAGTGCTG+AGG | 0.658441 | 1_1:-30226358 | Msa0018120:CDS |
| CAGCAGTCTAGTTCCTCCAG+CGG | 0.660392 | 1_1:-30229359 | Msa0018120:CDS |
| GAAAAGGAGGAGGTATCACG+TGG | 0.667131 | 1_1:-30229449 | Msa0018120:CDS |
| CTGGAGGAACTAGACTGCTG+CGG | 0.671536 | 1_1:+30229362 | None:intergenic |
| TGGACCAGAAGAACCGCTGG+AGG | 0.681587 | 1_1:+30229346 | None:intergenic |
| TTATAGAAAACTGAAAACAG+TGG | 0.699925 | 1_1:-30229240 | Msa0018120:CDS |
| AAAGGCATCTCAGACATGGG+TGG | 0.701972 | 1_1:-30229588 | Msa0018120:CDS |
| CAGTGCTGATGGTAGCCTGG+AGG | 0.733652 | 1_1:+30226207 | None:intergenic |
| AAAAGGAGGAGGTATCACGT+GGG | 0.768512 | 1_1:-30229448 | Msa0018120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGAAAACAAAAATAAAA+TGG | + | chr1_1:30226251-30226270 | None:intergenic | 10.0% |
| !!! | TTTATATTTTTTTACTTTGT+TGG | - | chr1_1:30226632-30226651 | Msa0018120:intron | 10.0% |
| !!! | AATTTTTATTATATAATCGT+GGG | + | chr1_1:30227249-30227268 | None:intergenic | 10.0% |
| !! | AAAATTGAATAACATTAAGT+TGG | + | chr1_1:30226283-30226302 | None:intergenic | 15.0% |
| !!! | TATTCAATTTTATCATTCAT+TGG | - | chr1_1:30226292-30226311 | Msa0018120:CDS | 15.0% |
| !! | TTTGAAAATTGATGAAAATT+TGG | + | chr1_1:30226383-30226402 | None:intergenic | 15.0% |
| !! | CTAATAATAAGAATGAAAAT+TGG | + | chr1_1:30226510-30226529 | None:intergenic | 15.0% |
| !!! | TGATATAGAAATTGAATTTT+TGG | - | chr1_1:30226596-30226615 | Msa0018120:intron | 15.0% |
| !!! | GAATTTTTATTATATAATCG+TGG | + | chr1_1:30227250-30227269 | None:intergenic | 15.0% |
| !!! | ATTTTTAGTTCTTAGAATTA+TGG | - | chr1_1:30228903-30228922 | Msa0018120:CDS | 15.0% |
| !!! | TTTAGTTTTAAAAAGAAAGT+TGG | + | chr1_1:30229595-30229614 | None:intergenic | 15.0% |
| !!! | TATTTAATACTTTTTTCAGA+TGG | + | chr1_1:30229894-30229913 | None:intergenic | 15.0% |
| !! | ATTAATTATTCCTTCTATAA+TGG | - | chr1_1:30230103-30230122 | Msa0018120:intron | 15.0% |
| !! | AAAAGTGAATGAATTAAATT+TGG | + | chr1_1:30230192-30230211 | None:intergenic | 15.0% |
| !! | AAATCAATAGTTAGATAAAT+TGG | - | chr1_1:30230221-30230240 | Msa0018120:intron | 15.0% |
| !!! | ATATGGTTTGATTGTTTTTT+TGG | - | chr1_1:30226969-30226988 | Msa0018120:intron | 20.0% |
| !! | AAAAAAACTTAGAAAAAGCA+TGG | + | chr1_1:30228077-30228096 | None:intergenic | 20.0% |
| !! | AAAAAATGATGTGATAAAAG+AGG | - | chr1_1:30228698-30228717 | Msa0018120:intron | 20.0% |
| !! | AAAAATGATGTGATAAAAGA+GGG | - | chr1_1:30228699-30228718 | Msa0018120:intron | 20.0% |
| !! | ATACCAAATAACTAATAGAA+GGG | - | chr1_1:30228842-30228861 | Msa0018120:intron | 20.0% |
| !!! | AATTCTGTTTTTGAAATTGT+TGG | - | chr1_1:30228873-30228892 | Msa0018120:intron | 20.0% |
| !!! | ATTCTGTTTTTGAAATTGTT+GGG | - | chr1_1:30228874-30228893 | Msa0018120:intron | 20.0% |
| !! | CTAACATAGTTGAAATAAAT+TGG | + | chr1_1:30229646-30229665 | None:intergenic | 20.0% |
| !!! | ATTCATTCACTTTTCATTTA+AGG | - | chr1_1:30230198-30230217 | Msa0018120:intron | 20.0% |
| !!! | TTGAATAACATTAAGTTGGT+GGG | + | chr1_1:30226279-30226298 | None:intergenic | 25.0% |
| !!! | ATTGAATAACATTAAGTTGG+TGG | + | chr1_1:30226280-30226299 | None:intergenic | 25.0% |
| !! | AACAGAGATTTTCTCAATTA+GGG | - | chr1_1:30226322-30226341 | Msa0018120:CDS | 25.0% |
| ! | TTGAATTCATGAAAATCTTG+AGG | - | chr1_1:30226658-30226677 | Msa0018120:intron | 25.0% |
| ! | TCACTAATGCTTGAAATTTA+TGG | - | chr1_1:30226729-30226748 | Msa0018120:intron | 25.0% |
| ! | TGTGTTTATTGTATTGTTGA+AGG | - | chr1_1:30226764-30226783 | Msa0018120:intron | 25.0% |
| ! | TTTATTGTATTGTTGAAGGA+TGG | - | chr1_1:30226768-30226787 | Msa0018120:intron | 25.0% |
| ! | AATCTCTTCTAAGTTCATTA+GGG | + | chr1_1:30226849-30226868 | None:intergenic | 25.0% |
| ! | AAATCTCTTCTAAGTTCATT+AGG | + | chr1_1:30226850-30226869 | None:intergenic | 25.0% |
| ! | AACTACATACATATTTAGCA+AGG | + | chr1_1:30226928-30226947 | None:intergenic | 25.0% |
| !! | TTTGTTTGAGATATTTGATG+AGG | - | chr1_1:30226946-30226965 | Msa0018120:intron | 25.0% |
| ! | TTAAGTTATAACAGAGACTT+GGG | - | chr1_1:30227031-30227050 | Msa0018120:intron | 25.0% |
| ! | AATAAAAATTCAGTTGCATC+TGG | - | chr1_1:30227259-30227278 | Msa0018120:intron | 25.0% |
| ! | AATCAATTTCGAAATTGAAG+TGG | - | chr1_1:30227467-30227486 | Msa0018120:intron | 25.0% |
| ! | TTATAGAAAACTGAAAACAG+TGG | - | chr1_1:30227501-30227520 | Msa0018120:intron | 25.0% |
| ! | AAAACAACAAAAGCAGAATA+AGG | + | chr1_1:30227586-30227605 | None:intergenic | 25.0% |
| ! | ATTGAAACAATTATTCGAAC+AGG | + | chr1_1:30227838-30227857 | None:intergenic | 25.0% |
| !! | ACTTACTACTTTAGAAATTG+AGG | - | chr1_1:30227959-30227978 | Msa0018120:intron | 25.0% |
| !! | CTTACTACTTTAGAAATTGA+GGG | - | chr1_1:30227960-30227979 | Msa0018120:intron | 25.0% |
| !! | TATTCAAGTTCATAAAACCT+AGG | - | chr1_1:30228253-30228272 | Msa0018120:intron | 25.0% |
| ! | TATCACATAGGTTAAGAAAT+AGG | + | chr1_1:30228286-30228305 | None:intergenic | 25.0% |
| ! | GAAAAATTGAGGAAATTCTA+TGG | + | chr1_1:30228324-30228343 | None:intergenic | 25.0% |
| ! | CATACCAAATAACTAATAGA+AGG | - | chr1_1:30228841-30228860 | Msa0018120:intron | 25.0% |
| ! | ATTCCCTTCTATTAGTTATT+TGG | + | chr1_1:30228848-30228867 | None:intergenic | 25.0% |
| ! | GTTGAAATTAAAGTCAACTA+AGG | + | chr1_1:30229062-30229081 | None:intergenic | 25.0% |
| !!! | CTTGATCGATTTATTTTCAA+AGG | - | chr1_1:30229286-30229305 | Msa0018120:CDS | 25.0% |
| !! | AACTACTTTAAGAACTCAAA+TGG | + | chr1_1:30229368-30229387 | None:intergenic | 25.0% |
| ! | ATTATGATCTACTGAAAATG+AGG | - | chr1_1:30229435-30229454 | Msa0018120:CDS | 25.0% |
| !!! | TCCAATGTCAATTTTAACAT+TGG | - | chr1_1:30229464-30229483 | Msa0018120:CDS | 25.0% |
| !!! | CCAATGTCAATTTTAACATT+GGG | - | chr1_1:30229465-30229484 | Msa0018120:CDS | 25.0% |
| !!! | CTAAAATATTGATTTACTCC+TGG | - | chr1_1:30229508-30229527 | Msa0018120:CDS | 25.0% |
| ! | AGTCTAATCTAAGTATATCT+TGG | - | chr1_1:30229965-30229984 | Msa0018120:intron | 25.0% |
| ! | AAAGTCAAATGCATAATCAA+TGG | - | chr1_1:30230003-30230022 | Msa0018120:intron | 25.0% |
| ! | ATAATCAATGGCTCAATAAA+AGG | - | chr1_1:30230015-30230034 | Msa0018120:intron | 25.0% |
| ! | GGCAAACAAATGAAAATTAA+GGG | + | chr1_1:30230046-30230065 | None:intergenic | 25.0% |
| ! | TGGCAAACAAATGAAAATTA+AGG | + | chr1_1:30230047-30230066 | None:intergenic | 25.0% |
| ! | GTTAAATGATATAGCAAAAC+TGG | + | chr1_1:30230067-30230086 | None:intergenic | 25.0% |
| ! | AATAGTTAGATAAATTGGAG+TGG | - | chr1_1:30230226-30230245 | Msa0018120:intron | 25.0% |
| ! | CAACAGAGATTTTCTCAATT+AGG | - | chr1_1:30226321-30226340 | Msa0018120:CDS | 30.0% |
| TTGACGCCATGAATTAAAAT+GGG | + | chr1_1:30226417-30226436 | None:intergenic | 30.0% | |
| TGAGATATTTGATGAGGATA+TGG | - | chr1_1:30226952-30226971 | Msa0018120:intron | 30.0% | |
| !!! | TGGTTTGATTGTTTTTTTGG+TGG | - | chr1_1:30226972-30226991 | Msa0018120:intron | 30.0% |
| !!! | GGTTTGATTGTTTTTTTGGT+GGG | - | chr1_1:30226973-30226992 | Msa0018120:intron | 30.0% |
| GTTAAGTTATAACAGAGACT+TGG | - | chr1_1:30227030-30227049 | Msa0018120:intron | 30.0% | |
| ! | AGATTTTATCACTGCTATTG+AGG | - | chr1_1:30227078-30227097 | Msa0018120:intron | 30.0% |
| CTAAGAAATCCTGATAAACT+TGG | + | chr1_1:30227439-30227458 | None:intergenic | 30.0% | |
| ! | CAATTTCGAAATTGATTCCA+CGG | + | chr1_1:30227464-30227483 | None:intergenic | 30.0% |
| ! | AGTTTTCTATAACCATTCCT+CGG | + | chr1_1:30227493-30227512 | None:intergenic | 30.0% |
| GATCATCATAAAGAAACTGA+TGG | - | chr1_1:30227523-30227542 | Msa0018120:intron | 30.0% | |
| AATACCAAATGCAATACAGT+CGG | - | chr1_1:30227812-30227831 | Msa0018120:intron | 30.0% | |
| !! | AAACAAGACCTTTGAGATAA+CGG | + | chr1_1:30228014-30228033 | None:intergenic | 30.0% |
| AACTTTGCAGTAATGTATTG+TGG | - | chr1_1:30228104-30228123 | Msa0018120:intron | 30.0% | |
| GTATTGTGGCTTATACTTAT+TGG | - | chr1_1:30228118-30228137 | Msa0018120:intron | 30.0% | |
| ACTTTCTATGGTTATCACAT+AGG | + | chr1_1:30228298-30228317 | None:intergenic | 30.0% | |
| ATTCTATGGTACACTTTCTA+TGG | + | chr1_1:30228310-30228329 | None:intergenic | 30.0% | |
| TAGCAAACAACGAAAAATTG+AGG | + | chr1_1:30228335-30228354 | None:intergenic | 30.0% | |
| ! | CTTTGTTGTACTACATAGTA+AGG | - | chr1_1:30228375-30228394 | Msa0018120:intron | 30.0% |
| !! | TAGTAAGGTGAAGTTGATAA+AGG | - | chr1_1:30228390-30228409 | Msa0018120:intron | 30.0% |
| !! | AGTAAGGTGAAGTTGATAAA+GGG | - | chr1_1:30228391-30228410 | Msa0018120:intron | 30.0% |
| !! | TAAACTAACAGCTTTGGAAT+CGG | + | chr1_1:30228491-30228510 | None:intergenic | 30.0% |
| TTATGCAAGATGAACACTAA+TGG | - | chr1_1:30228574-30228593 | Msa0018120:intron | 30.0% | |
| TATGCAAGATGAACACTAAT+GGG | - | chr1_1:30228575-30228594 | Msa0018120:intron | 30.0% | |
| TCTACCATCTAATCAACTTA+TGG | - | chr1_1:30228610-30228629 | Msa0018120:intron | 30.0% | |
| !! | TCTGACACCTTATCATTTTT+GGG | + | chr1_1:30228649-30228668 | None:intergenic | 30.0% |
| ! | TTCTGACACCTTATCATTTT+TGG | + | chr1_1:30228650-30228669 | None:intergenic | 30.0% |
| TAAAAGAGGGATAAAGAGAA+AGG | - | chr1_1:30228712-30228731 | Msa0018120:intron | 30.0% | |
| ATTATGTTATGTGCTCTTGT+AGG | + | chr1_1:30228816-30228835 | None:intergenic | 30.0% | |
| ! | TCTCGTTACTCTTTTTGAAT+AGG | + | chr1_1:30229001-30229020 | None:intergenic | 30.0% |
| CAAATATGTGTAGAAGAAAG+AGG | - | chr1_1:30229132-30229151 | Msa0018120:intron | 30.0% | |
| CTCCTATCACACTAATTTAT+CGG | - | chr1_1:30229222-30229241 | Msa0018120:CDS | 30.0% | |
| ! | TGTGATAAATTTTGCTGCAA+CGG | + | chr1_1:30229393-30229412 | None:intergenic | 30.0% |
| CCCAATGTTAAAATTGACAT+TGG | + | chr1_1:30229468-30229487 | None:intergenic | 30.0% | |
| ! | TTGTGATGATGTATCATGTA+TGG | + | chr1_1:30229542-30229561 | None:intergenic | 30.0% |
| !!! | GGTATTTTGACCATTATAGA+AGG | + | chr1_1:30230116-30230135 | None:intergenic | 30.0% |
| CTATAATGGTCAAAATACCA+TGG | - | chr1_1:30230117-30230136 | Msa0018120:intron | 30.0% | |
| TTAGATAAATTGGAGTGGTT+TGG | - | chr1_1:30230231-30230250 | Msa0018120:intron | 30.0% | |
| !!! | TTTTATTTTCCTCTTGTCGA+TGG | + | chr1_1:30230286-30230305 | None:intergenic | 30.0% |
| ! | ATTTACTGCTTCAGTTGTTT+TGG | - | chr1_1:30230341-30230360 | Msa0018120:five_prime_UTR | 30.0% |
| AAGCGGGTATAATAGGATTA+AGG | + | chr1_1:30226168-30226187 | None:intergenic | 35.0% | |
| !!! | TGTTGGTTTTGAGAATGAAG+CGG | + | chr1_1:30226185-30226204 | None:intergenic | 35.0% |
| !! | AAGAGTTCTGGTTAGTTTGT+TGG | + | chr1_1:30226202-30226221 | None:intergenic | 35.0% |
| !!! | AAGCGACCCATTTTAATTCA+TGG | - | chr1_1:30226408-30226427 | Msa0018120:intron | 35.0% |
| CTTGACGCCATGAATTAAAA+TGG | + | chr1_1:30226418-30226437 | None:intergenic | 35.0% | |
| TCTTCGGCAGCATTAAAAAA+TGG | + | chr1_1:30226463-30226482 | None:intergenic | 35.0% | |
| GAAGGATGGAATCTACATAT+AGG | - | chr1_1:30226782-30226801 | Msa0018120:intron | 35.0% | |
| TGGAATCTACATATAGGACA+TGG | - | chr1_1:30226788-30226807 | Msa0018120:intron | 35.0% | |
| AGAGATTTACTTACTACCCT+TGG | - | chr1_1:30226862-30226881 | Msa0018120:intron | 35.0% | |
| !!! | CTAGTGCTGATATTGGTTTT+TGG | - | chr1_1:30227335-30227354 | Msa0018120:intron | 35.0% |
| ! | GTTTTTCTCCTTTGCTTGAT+TGG | - | chr1_1:30227859-30227878 | Msa0018120:intron | 35.0% |
| !! | TTTTAATTACACGTCACACG+AGG | - | chr1_1:30228152-30228171 | Msa0018120:intron | 35.0% |
| AAGAAATAGGACACTAACCT+AGG | + | chr1_1:30228273-30228292 | None:intergenic | 35.0% | |
| !! | GTAAGGTGAAGTTGATAAAG+GGG | - | chr1_1:30228392-30228411 | Msa0018120:intron | 35.0% |
| ACATGCTAAACTAACAGCTT+TGG | + | chr1_1:30228497-30228516 | None:intergenic | 35.0% | |
| TTCTGCTCAGCTCTTATTAA+CGG | - | chr1_1:30228546-30228565 | Msa0018120:intron | 35.0% | |
| ATGCAAGATGAACACTAATG+GGG | - | chr1_1:30228576-30228595 | Msa0018120:intron | 35.0% | |
| !! | GTGTCCATAAGTTGATTAGA+TGG | + | chr1_1:30228617-30228636 | None:intergenic | 35.0% |
| TAACTCGCCCAAAAATGATA+AGG | - | chr1_1:30228639-30228658 | Msa0018120:intron | 35.0% | |
| ACTCTTACACTGTTACACAT+TGG | - | chr1_1:30229100-30229119 | Msa0018120:intron | 35.0% | |
| TAAGAACTCATAAACCTGAG+AGG | + | chr1_1:30229202-30229221 | None:intergenic | 35.0% | |
| CTCCGATAAATTAGTGTGAT+AGG | + | chr1_1:30229227-30229246 | None:intergenic | 35.0% | |
| CTATCACACTAATTTATCGG+AGG | - | chr1_1:30229225-30229244 | Msa0018120:CDS | 35.0% | |
| GGTAGTTATGATGAAAGTAG+AGG | + | chr1_1:30229772-30229791 | None:intergenic | 35.0% | |
| CAGATGGAAAGATAATGTGA+AGG | + | chr1_1:30229878-30229897 | None:intergenic | 35.0% | |
| GTAAGTACATTAACACACTC+AGG | - | chr1_1:30229922-30229941 | Msa0018120:CDS | 35.0% | |
| ACAAAATAAGGTAACCGTGT+GGG | + | chr1_1:30230145-30230164 | None:intergenic | 35.0% | |
| AACAAAATAAGGTAACCGTG+TGG | + | chr1_1:30230146-30230165 | None:intergenic | 35.0% | |
| !!! | TCGATGGATATTGTTTTGGA+TGG | + | chr1_1:30230270-30230289 | None:intergenic | 35.0% |
| ! | CTTGTCGATGGATATTGTTT+TGG | + | chr1_1:30230274-30230293 | None:intergenic | 35.0% |
| AAACAATATCCATCGACAAG+AGG | - | chr1_1:30230274-30230293 | Msa0018120:CDS | 35.0% | |
| !!! | TGTTTTGGTTCTTCTTGTTG+TGG | - | chr1_1:30230356-30230375 | Msa0018120:five_prime_UTR | 35.0% |
| !!! | CCTTTTGGGATTCATAAACA+TGG | + | chr1_1:30230443-30230462 | None:intergenic | 35.0% |
| CCATGTTTATGAATCCCAAA+AGG | - | chr1_1:30230440-30230459 | Msa0018120:five_prime_UTR | 35.0% | |
| CACGGAAGGATTTCAATATT+GGG | + | chr1_1:30230612-30230631 | None:intergenic | 35.0% | |
| TCACGGAAGGATTTCAATAT+TGG | + | chr1_1:30230613-30230632 | None:intergenic | 35.0% | |
| GAGAATGAAGCGGGTATAAT+AGG | + | chr1_1:30226175-30226194 | None:intergenic | 40.0% | |
| !!! | GTTGGTTTTGAGAATGAAGC+GGG | + | chr1_1:30226184-30226203 | None:intergenic | 40.0% |
| ACTAACCAGAACTCTTCTCT+CGG | - | chr1_1:30226206-30226225 | Msa0018120:CDS | 40.0% | |
| TGCAGATTCCTGAACTTCTT+CGG | + | chr1_1:30226479-30226498 | None:intergenic | 40.0% | |
| AAGTTCAGGAATCTGCAGAT+AGG | - | chr1_1:30226482-30226501 | Msa0018120:intron | 40.0% | |
| !!! | CATGCTGGAAGTATTTTTGG+TGG | + | chr1_1:30226821-30226840 | None:intergenic | 40.0% |
| !!! | CCACATGCTGGAAGTATTTT+TGG | + | chr1_1:30226824-30226843 | None:intergenic | 40.0% |
| CCAAAAATACTTCCAGCATG+TGG | - | chr1_1:30226821-30226840 | Msa0018120:intron | 40.0% | |
| AGGAATTTGAACGCGAAGTT+AGG | - | chr1_1:30227008-30227027 | Msa0018120:intron | 40.0% | |
| !! | TAGAAAGGCATCTCAGACAT+GGG | - | chr1_1:30227150-30227169 | Msa0018120:intron | 40.0% |
| !! | CGAGCTTGCTTTGTTTCTTT+CGG | - | chr1_1:30227198-30227217 | Msa0018120:intron | 40.0% |
| !! | GAGCTTGCTTTGTTTCTTTC+GGG | - | chr1_1:30227199-30227218 | Msa0018120:intron | 40.0% |
| ! | TTTGTTTCTTTCGGGAATGC+CGG | - | chr1_1:30227207-30227226 | Msa0018120:intron | 40.0% |
| AATTCAGTTGCATCTGGTGT+TGG | - | chr1_1:30227265-30227284 | Msa0018120:intron | 40.0% | |
| ATTCAGTTGCATCTGGTGTT+GGG | - | chr1_1:30227266-30227285 | Msa0018120:intron | 40.0% | |
| TGGTCCAAATCCAATGCATA+AGG | - | chr1_1:30227411-30227430 | Msa0018120:intron | 40.0% | |
| AAACTTGGCACCTTATGCAT+TGG | + | chr1_1:30227424-30227443 | None:intergenic | 40.0% | |
| ! | CATAAGGTGCCAAGTTTATC+AGG | - | chr1_1:30227427-30227446 | Msa0018120:intron | 40.0% |
| ATCAGGATTTCTTAGTTCCG+TGG | - | chr1_1:30227444-30227463 | Msa0018120:intron | 40.0% | |
| ! | TGATGGTGCACTAATTCCAA+TGG | - | chr1_1:30227540-30227559 | Msa0018120:intron | 40.0% |
| TTCCAATGGCTGAATTGAAC+AGG | - | chr1_1:30227554-30227573 | Msa0018120:intron | 40.0% | |
| TCCAATGGCTGAATTGAACA+GGG | - | chr1_1:30227555-30227574 | Msa0018120:intron | 40.0% | |
| ATCGTTGAAACTTCGTTGTG+TGG | - | chr1_1:30227610-30227629 | Msa0018120:intron | 40.0% | |
| AGCATTCATCAGAACTATCG+AGG | + | chr1_1:30227735-30227754 | None:intergenic | 40.0% | |
| TGCTATGACAAGCATCTCTA+TGG | - | chr1_1:30227751-30227770 | Msa0018120:intron | 40.0% | |
| ATGACAAGCATCTCTATGGA+TGG | - | chr1_1:30227755-30227774 | Msa0018120:intron | 40.0% | |
| CCTTTGCTTGATTGGTAAGT+CGG | - | chr1_1:30227867-30227886 | Msa0018120:intron | 40.0% | |
| GCAAGTAAATGCAAGTGTGT+CGG | + | chr1_1:30227915-30227934 | None:intergenic | 40.0% | |
| GCGACACTGCTAATGTAATA+AGG | + | chr1_1:30227992-30228011 | None:intergenic | 40.0% | |
| AGCATGGATGAATAGTGAGT+GGG | + | chr1_1:30228061-30228080 | None:intergenic | 40.0% | |
| AAGCATGGATGAATAGTGAG+TGG | + | chr1_1:30228062-30228081 | None:intergenic | 40.0% | |
| CAGAGAAGAGAAGACAGAAA+CGG | - | chr1_1:30228783-30228802 | Msa0018120:intron | 40.0% | |
| ! | CTTTTGAGCAACTTGAGAGA+CGG | + | chr1_1:30229179-30229198 | None:intergenic | 40.0% |
| CCGATCTAAAAACAACGATC+GGG | + | chr1_1:30229257-30229276 | None:intergenic | 40.0% | |
| !!! | CCCGATCGTTGTTTTTAGAT+CGG | - | chr1_1:30229254-30229273 | Msa0018120:CDS | 40.0% |
| CCCGATCTAAAAACAACGAT+CGG | + | chr1_1:30229258-30229277 | None:intergenic | 40.0% | |
| !!! | CCGATCGTTGTTTTTAGATC+GGG | - | chr1_1:30229255-30229274 | Msa0018120:CDS | 40.0% |
| TCAAAGGCTTAGTAACTTCG+AGG | - | chr1_1:30229302-30229321 | Msa0018120:CDS | 40.0% | |
| CAAAGGCTTAGTAACTTCGA+GGG | - | chr1_1:30229303-30229322 | Msa0018120:CDS | 40.0% | |
| CACAATTCGCAGTAGTGATA+TGG | - | chr1_1:30229409-30229428 | Msa0018120:CDS | 40.0% | |
| !! | TGGGATGCTCTAAGATTTCA+AGG | - | chr1_1:30229484-30229503 | Msa0018120:CDS | 40.0% |
| AACATGGGTTCTTGGAACTT+AGG | + | chr1_1:30229719-30229738 | None:intergenic | 40.0% | |
| TGAACAGAACCAAGGAACAT+GGG | + | chr1_1:30229734-30229753 | None:intergenic | 40.0% | |
| ATGAACAGAACCAAGGAACA+TGG | + | chr1_1:30229735-30229754 | None:intergenic | 40.0% | |
| GGATAGTATGAACAGAACCA+AGG | + | chr1_1:30229742-30229761 | None:intergenic | 40.0% | |
| ! | TGTTAGCAACTGGTTAGTTG+TGG | + | chr1_1:30229793-30229812 | None:intergenic | 40.0% |
| AGCTTGAAGATGTTAGCAAC+TGG | + | chr1_1:30229803-30229822 | None:intergenic | 40.0% | |
| GCTAACATCTTCAAGCTTAG+TGG | - | chr1_1:30229806-30229825 | Msa0018120:intron | 40.0% | |
| AAAATACCATGGTTCCCACA+CGG | - | chr1_1:30230128-30230147 | Msa0018120:intron | 40.0% | |
| !! | CTTGTTGTGGCGATTTTGAA+TGG | - | chr1_1:30230369-30230388 | Msa0018120:five_prime_UTR | 40.0% |
| TTTGAATGGCTATAGTGCTG+AGG | - | chr1_1:30230383-30230402 | Msa0018120:five_prime_UTR | 40.0% | |
| ! | TTGAATGGCTATAGTGCTGA+GGG | - | chr1_1:30230384-30230403 | Msa0018120:five_prime_UTR | 40.0% |
| !! | AGATCCTTATTAGGTTGAGG+AGG | + | chr1_1:30230561-30230580 | None:intergenic | 40.0% |
| ! | TGGAGATCCTTATTAGGTTG+AGG | + | chr1_1:30230564-30230583 | None:intergenic | 40.0% |
| !! | GTGGATTGGAGATCCTTATT+AGG | + | chr1_1:30230570-30230589 | None:intergenic | 40.0% |
| !! | ATTACCACTTTTAGCTGTGG+TGG | + | chr1_1:30230589-30230608 | None:intergenic | 40.0% |
| TAGATCCGAGAGAAGAGTTC+TGG | + | chr1_1:30226214-30226233 | None:intergenic | 45.0% | |
| TCATGGCGTCAAGTCTTGAT+CGG | - | chr1_1:30226425-30226444 | Msa0018120:intron | 45.0% | |
| TAATGCTGCCGAAGAAGTTC+AGG | - | chr1_1:30226468-30226487 | Msa0018120:intron | 45.0% | |
| TTCATTAGGGTTCCACATGC+TGG | + | chr1_1:30226836-30226855 | None:intergenic | 45.0% | |
| TTGGTGGGATATGCAGTTAG+AGG | - | chr1_1:30226988-30227007 | Msa0018120:intron | 45.0% | |
| TTAGATGAAACGAACCCTCC+AGG | - | chr1_1:30227127-30227146 | Msa0018120:intron | 45.0% | |
| !! | GTAGAAAGGCATCTCAGACA+TGG | - | chr1_1:30227149-30227168 | Msa0018120:intron | 45.0% |
| ! | ATCTCAGACATGGGTGGTTT+TGG | - | chr1_1:30227159-30227178 | Msa0018120:intron | 45.0% |
| ! | TTCAGTTGCATCTGGTGTTG+GGG | - | chr1_1:30227267-30227286 | Msa0018120:intron | 45.0% |
| ! | ATCTGGTGTTGGGGAAGAAA+AGG | - | chr1_1:30227276-30227295 | Msa0018120:intron | 45.0% |
| !! | AAAAGGAGGAGGTATCACGT+GGG | - | chr1_1:30227293-30227312 | Msa0018120:intron | 45.0% |
| GGCACCTTATGCATTGGATT+TGG | + | chr1_1:30227418-30227437 | None:intergenic | 45.0% | |
| TTTCGAAATTGAAGTGGCCG+AGG | - | chr1_1:30227473-30227492 | Msa0018120:intron | 45.0% | |
| AAATTGAAGTGGCCGAGGAA+TGG | - | chr1_1:30227478-30227497 | Msa0018120:intron | 45.0% | |
| ACCCTGTTCAATTCAGCCAT+TGG | + | chr1_1:30227559-30227578 | None:intergenic | 45.0% | |
| AAGCATCTCTATGGATGGTG+TGG | - | chr1_1:30227760-30227779 | Msa0018120:intron | 45.0% | |
| CCGACTTACCAATCAAGCAA+AGG | + | chr1_1:30227870-30227889 | None:intergenic | 45.0% | |
| !! | TTGTAGCTTGCTGCAGCATT+AGG | - | chr1_1:30228215-30228234 | Msa0018120:intron | 45.0% |
| AAGTTGCTCAAAAGCCTCTC+AGG | - | chr1_1:30229185-30229204 | Msa0018120:intron | 45.0% | |
| GAGGGCGGAAAATATGAAGT+GGG | - | chr1_1:30229321-30229340 | Msa0018120:CDS | 45.0% | |
| TCATGTATGGACTCTGAACC+AGG | + | chr1_1:30229529-30229548 | None:intergenic | 45.0% | |
| TTCCAAGAACCCATGTTCCT+TGG | - | chr1_1:30229722-30229741 | Msa0018120:CDS | 45.0% | |
| AACCAAGGAACATGGGTTCT+TGG | + | chr1_1:30229727-30229746 | None:intergenic | 45.0% | |
| GATGAAAGTAGAGGTCATGC+TGG | + | chr1_1:30229763-30229782 | None:intergenic | 45.0% | |
| GAAGGATAAGAGTGACGTGT+GGG | + | chr1_1:30229860-30229879 | None:intergenic | 45.0% | |
| TGAAGGATAAGAGTGACGTG+TGG | + | chr1_1:30229861-30229880 | None:intergenic | 45.0% | |
| CTGTCCTCCTCAACCTAATA+AGG | - | chr1_1:30230554-30230573 | Msa0018120:five_prime_UTR | 45.0% | |
| !!! | CACTTTTAGCTGTGGTGGAT+TGG | + | chr1_1:30230584-30230603 | None:intergenic | 45.0% |
| CAATCCACCACAGCTAAAAG+TGG | - | chr1_1:30230582-30230601 | Msa0018120:five_prime_UTR | 45.0% | |
| !! | GGGATTACCACTTTTAGCTG+TGG | + | chr1_1:30230592-30230611 | None:intergenic | 45.0% |
| !!! | TTTTATTTTTTATTGAAAAA+AGG | - | chr1_1:30227675-30227694 | Msa0018120:intron | 5.0% |
| !!! | TTTATTTTTTATTGAAAAAA+GGG | - | chr1_1:30227676-30227695 | Msa0018120:intron | 5.0% |
| !!! | AAAATATTTTTAACAAAATA+AGG | + | chr1_1:30230157-30230176 | None:intergenic | 5.0% |
| CTACCCTTGGCACTGCTAAA+TGG | - | chr1_1:30226875-30226894 | Msa0018120:intron | 50.0% | |
| ! | CTGCCATTTAGCAGTGCCAA+GGG | + | chr1_1:30226881-30226900 | None:intergenic | 50.0% |
| TGGGCGATGATGCAAGAACT+AGG | - | chr1_1:30227050-30227069 | Msa0018120:intron | 50.0% | |
| AACGAACCCTCCAGGTAGAA+AGG | - | chr1_1:30227135-30227154 | Msa0018120:intron | 50.0% | |
| GAGATGCCTTTCTACCTGGA+GGG | + | chr1_1:30227144-30227163 | None:intergenic | 50.0% | |
| TGAGATGCCTTTCTACCTGG+AGG | + | chr1_1:30227145-30227164 | None:intergenic | 50.0% | |
| ! | GTCTGAGATGCCTTTCTACC+TGG | + | chr1_1:30227148-30227167 | None:intergenic | 50.0% |
| !! | AAAGGCATCTCAGACATGGG+TGG | - | chr1_1:30227153-30227172 | Msa0018120:intron | 50.0% |
| !!! | ACATGGGTGGTTTTGGACGA+AGG | - | chr1_1:30227166-30227185 | Msa0018120:intron | 50.0% |
| ! | TGGTGTTGGGGAAGAAAAGG+AGG | - | chr1_1:30227279-30227298 | Msa0018120:intron | 50.0% |
| TGTTGGGGAAGAAAAGGAGG+AGG | - | chr1_1:30227282-30227301 | Msa0018120:intron | 50.0% | |
| !! | GAAAAGGAGGAGGTATCACG+TGG | - | chr1_1:30227292-30227311 | Msa0018120:intron | 50.0% |
| !! | GCTAGCGCTAGTGCTGATAT+TGG | - | chr1_1:30227328-30227347 | Msa0018120:intron | 50.0% |
| ATTTGGACCAGAAGAACCGC+TGG | + | chr1_1:30227401-30227420 | None:intergenic | 50.0% | |
| CAGGCCGACTGTATTGCATT+TGG | + | chr1_1:30227819-30227838 | None:intergenic | 50.0% | |
| CAGTGTCGCCGTTATCTCAA+AGG | - | chr1_1:30228003-30228022 | Msa0018120:intron | 50.0% | |
| TACACGTCACACGAGGTAGA+AGG | - | chr1_1:30228159-30228178 | Msa0018120:intron | 50.0% | |
| AGGCTTAGTAACTTCGAGGG+CGG | - | chr1_1:30229306-30229325 | Msa0018120:CDS | 50.0% | |
| CGAGGGCGGAAAATATGAAG+TGG | - | chr1_1:30229320-30229339 | Msa0018120:CDS | 50.0% | |
| CACAACGAACAACCTGGCAT+CGG | + | chr1_1:30230480-30230499 | None:intergenic | 50.0% | |
| TTACGCCACAACGAACAACC+TGG | + | chr1_1:30230486-30230505 | None:intergenic | 50.0% | |
| TTTCCTGACGATTGTCCTCC+AGG | - | chr1_1:30230519-30230538 | Msa0018120:five_prime_UTR | 50.0% | |
| TGGCGTCAAGTCTTGATCGG+TGG | - | chr1_1:30226428-30226447 | Msa0018120:intron | 55.0% | |
| GGCGTCAAGTCTTGATCGGT+GGG | - | chr1_1:30226429-30226448 | Msa0018120:intron | 55.0% | |
| ! | CCTGCCATTTAGCAGTGCCA+AGG | + | chr1_1:30226882-30226901 | None:intergenic | 55.0% |
| CCTTGGCACTGCTAAATGGC+AGG | - | chr1_1:30226879-30226898 | Msa0018120:intron | 55.0% | |
| !! | GGGTTGTTGCTTTCAGCTGC+CGG | + | chr1_1:30227229-30227248 | None:intergenic | 55.0% |
| ! | AGGTATCACGTGGGCATCGT+AGG | - | chr1_1:30227302-30227321 | Msa0018120:intron | 55.0% |
| ! | GGTATCACGTGGGCATCGTA+GGG | - | chr1_1:30227303-30227322 | Msa0018120:intron | 55.0% |
| CTGGAGGAACTAGACTGCTG+CGG | + | chr1_1:30227382-30227401 | None:intergenic | 55.0% | |
| ! | CAGCAGTCTAGTTCCTCCAG+CGG | - | chr1_1:30227382-30227401 | Msa0018120:intron | 55.0% |
| AGTTCCTCCAGCGGTTCTTC+TGG | - | chr1_1:30227391-30227410 | Msa0018120:intron | 55.0% | |
| AGGTAACCGTGTGGGAACCA+TGG | + | chr1_1:30230137-30230156 | None:intergenic | 55.0% | |
| ! | AACGAACAACCTGGCATCGG+CGG | + | chr1_1:30230477-30230496 | None:intergenic | 55.0% |
| CGATGCCAGGTTGTTCGTTG+TGG | - | chr1_1:30230478-30230497 | Msa0018120:five_prime_UTR | 55.0% | |
| TAGCCTGGAGGACAATCGTC+AGG | + | chr1_1:30230525-30230544 | None:intergenic | 55.0% | |
| ! | GTTGAGGAGGACAGTGCTGA+TGG | + | chr1_1:30230548-30230567 | None:intergenic | 55.0% |
| TGGACCAGAAGAACCGCTGG+AGG | + | chr1_1:30227398-30227417 | None:intergenic | 60.0% | |
| ! | GGCTATAGTGCTGAGGGTGC+AGG | - | chr1_1:30230390-30230409 | Msa0018120:five_prime_UTR | 60.0% |
| ! | AGTGCTGAGGGTGCAGGAAG+AGG | - | chr1_1:30230396-30230415 | Msa0018120:five_prime_UTR | 60.0% |
| ! | CGGCGGCGAGAACACCTTTT+GGG | + | chr1_1:30230457-30230476 | None:intergenic | 60.0% |
| !! | CAGTGCTGATGGTAGCCTGG+AGG | + | chr1_1:30230537-30230556 | None:intergenic | 60.0% |
| !! | GGACAGTGCTGATGGTAGCC+TGG | + | chr1_1:30230540-30230559 | None:intergenic | 60.0% |
| ! | GCGGCGGCGAGAACACCTTT+TGG | + | chr1_1:30230458-30230477 | None:intergenic | 65.0% |
| !! | GAACAACCTGGCATCGGCGG+CGG | + | chr1_1:30230474-30230493 | None:intergenic | 65.0% |
| TTCTCGCCGCCGCCGATGCC+AGG | - | chr1_1:30230465-30230484 | Msa0018120:five_prime_UTR | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 30226131 | 30230632 | 30226131 | ID=Msa0018120;Name=Msa0018120 |
| chr1_1 | mRNA | 30226131 | 30230632 | 30226131 | ID=Msa0018120-mRNA-1;Parent=Msa0018120;Name=Msa0018120-mRNA-1;_AED=0.22;_eAED=0.22;_QI=296|0.75|0.8|1|1|1|5|0|408 |
| chr1_1 | exon | 30226131 | 30226408 | 30226131 | ID=Msa0018120-mRNA-1:exon:10139;Parent=Msa0018120-mRNA-1 |
| chr1_1 | exon | 30228883 | 30229066 | 30228883 | ID=Msa0018120-mRNA-1:exon:10138;Parent=Msa0018120-mRNA-1 |
| chr1_1 | exon | 30229187 | 30229759 | 30229187 | ID=Msa0018120-mRNA-1:exon:10137;Parent=Msa0018120-mRNA-1 |
| chr1_1 | exon | 30229863 | 30229977 | 30229863 | ID=Msa0018120-mRNA-1:exon:10136;Parent=Msa0018120-mRNA-1 |
| chr1_1 | exon | 30230260 | 30230632 | 30230260 | ID=Msa0018120-mRNA-1:exon:10135;Parent=Msa0018120-mRNA-1 |
| chr1_1 | five_prime_UTR | 30230337 | 30230632 | 30230337 | ID=Msa0018120-mRNA-1:five_prime_utr;Parent=Msa0018120-mRNA-1 |
| chr1_1 | CDS | 30230260 | 30230336 | 30230260 | ID=Msa0018120-mRNA-1:cds;Parent=Msa0018120-mRNA-1 |
| chr1_1 | CDS | 30229863 | 30229977 | 30229863 | ID=Msa0018120-mRNA-1:cds;Parent=Msa0018120-mRNA-1 |
| chr1_1 | CDS | 30229187 | 30229759 | 30229187 | ID=Msa0018120-mRNA-1:cds;Parent=Msa0018120-mRNA-1 |
| chr1_1 | CDS | 30228883 | 30229066 | 30228883 | ID=Msa0018120-mRNA-1:cds;Parent=Msa0018120-mRNA-1 |
| chr1_1 | CDS | 30226131 | 30226408 | 30226131 | ID=Msa0018120-mRNA-1:cds;Parent=Msa0018120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
