Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0097320 | Q2HRK3 | 97.170 | 318 | 9 | 0 | 1 | 318 | 1 | 318 | 0.0 | 647 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0018120 | Msa0097320 | 0.911504 | 5.641460e-83 | -8.615850e-47 |
| Msa0052190 | Msa0097320 | 0.820162 | 7.934108e-53 | -8.615850e-47 |
| Msa0093520 | Msa0097320 | 0.818274 | 2.134922e-52 | -8.615850e-47 |
| Msa0097230 | Msa0097320 | 0.903623 | 2.865920e-79 | -8.615850e-47 |
| Msa0097320 | Msa0175050 | 0.822748 | 2.006435e-53 | -8.615850e-47 |
| Msa0097320 | Msa0244190 | 0.804953 | 1.686630e-49 | -8.615850e-47 |
| Msa0097320 | Msa0245860 | 0.807846 | 4.140570e-50 | -8.615850e-47 |
| Msa0097320 | Msa0271550 | 0.817978 | 2.490705e-52 | -8.615850e-47 |
| Msa0097320 | Msa0271790 | 0.801591 | 8.374928e-49 | -8.615850e-47 |
| Msa0097320 | Msa0308460 | 0.815744 | 7.902231e-52 | -8.615850e-47 |
| Msa0097320 | Msa0319290 | 0.815576 | 8.611281e-52 | -8.615850e-47 |
| Msa0097320 | Msa0371950 | 0.823878 | 1.092900e-53 | -8.615850e-47 |
| Msa0097320 | Msa0410580 | 0.805665 | 1.196040e-49 | -8.615850e-47 |
| Msa0097320 | Msa0422180 | 0.800444 | 1.437099e-48 | -8.615850e-47 |
| Msa0097320 | Msa0485490 | 0.817297 | 3.547850e-52 | -8.615850e-47 |
| Msa0097320 | Msa0582180 | 0.807959 | 3.916980e-50 | -8.615850e-47 |
| Msa0097320 | Msa0644400 | 0.807238 | 5.574043e-50 | -8.615850e-47 |
| Msa0097320 | Msa0741070 | 0.800352 | 1.500416e-48 | -8.615850e-47 |
| Msa0097320 | Msa0741160 | 0.806450 | 8.176313e-50 | -8.615850e-47 |
| Msa0097320 | Msa0876360 | 0.801284 | 9.681239e-49 | -8.615850e-47 |
| Msa0097320 | Msa0968150 | 0.879940 | 8.266078e-70 | -8.615850e-47 |
| Msa0097320 | Msa1050410 | 0.806369 | 8.504010e-50 | -8.615850e-47 |
| Msa0097320 | Msa1060910 | 0.812307 | 4.528421e-51 | -8.615850e-47 |
| Msa0097320 | Msa1063400 | 0.808779 | 2.619180e-50 | -8.615850e-47 |
| Msa0097320 | Msa1093480 | 0.801675 | 8.052522e-49 | -8.615850e-47 |
| Msa0097320 | Msa1138530 | 0.800701 | 1.273817e-48 | -8.615850e-47 |
| Msa0097320 | Msa1174310 | 0.804612 | 1.987364e-49 | -8.615850e-47 |
| Msa0097320 | Msa1220940 | 0.806269 | 8.930257e-50 | -8.615850e-47 |
| Msa0097320 | Msa1288450 | 0.819554 | 1.092853e-52 | -8.615850e-47 |
| Msa0097320 | Msa1305350 | 0.815097 | 1.100934e-51 | -8.615850e-47 |
| Msa0097320 | Msa1307550 | 0.803048 | 4.197362e-49 | -8.615850e-47 |
| Msa0097320 | Msa1310220 | 0.801836 | 7.461803e-49 | -8.615850e-47 |
| Msa0097320 | Msa1314770 | 0.820467 | 6.754986e-53 | -8.615850e-47 |
| Msa0097320 | Msa1335710 | 0.804900 | 1.730013e-49 | -8.615850e-47 |
| Msa0097320 | Msa1371940 | 0.802143 | 6.451860e-49 | -8.615850e-47 |
| Msa0097320 | Msa1378680 | 0.823491 | 1.346214e-53 | -8.615850e-47 |
| Msa0097320 | Msa1401460 | 0.810539 | 1.096391e-50 | -8.615850e-47 |
| Msa0097320 | Msa1433220 | 0.801083 | 1.064551e-48 | -8.615850e-47 |
| Msa0097320 | Msa1462360 | 0.810526 | 1.103281e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0097320 | MtrunA17_Chr1g0152781 | 97.170 | 318 | 9 | 0 | 1 | 318 | 1 | 318 | 0.0 | 647 |
| Msa0097320 | MtrunA17_Chr3g0134601 | 59.412 | 340 | 111 | 7 | 1 | 322 | 1 | 331 | 1.18e-129 | 373 |
| Msa0097320 | MtrunA17_Chr4g0072471 | 57.971 | 138 | 56 | 2 | 1 | 137 | 3 | 139 | 1.87e-40 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0097320 | AT1G27700.1 | 44.340 | 318 | 150 | 4 | 1 | 318 | 1 | 291 | 2.46e-88 | 267 |
| Msa0097320 | AT2G18860.3 | 50.360 | 139 | 58 | 3 | 1 | 137 | 3 | 132 | 5.95e-35 | 128 |
| Msa0097320 | AT4G30240.1 | 39.823 | 226 | 122 | 6 | 1 | 218 | 3 | 222 | 1.23e-34 | 128 |
| Msa0097320 | AT2G18860.1 | 50.360 | 139 | 58 | 3 | 1 | 137 | 3 | 132 | 1.50e-34 | 128 |
| Msa0097320 | AT2G18860.2 | 49.123 | 114 | 47 | 3 | 26 | 137 | 9 | 113 | 3.91e-24 | 100 |
Find 86 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAAAATTGATGAAAATT+TGG | 0.141221 | 1_3:-3122563 | None:intergenic |
| CTTGACGCCATGAATTAAAA+TGG | 0.192881 | 1_3:-3122598 | None:intergenic |
| GAGCTTGCTTTGTTTCTTTC+GGG | 0.219757 | 1_3:+3123382 | Msa0097320:CDS |
| CGAGCTTGCTTTGTTTCTTT+CGG | 0.245739 | 1_3:+3123381 | Msa0097320:CDS |
| AAATCTCTTCTAAGTTCATT+AGG | 0.250806 | 1_3:-3123030 | None:intergenic |
| CATAAGGTGCCAAGTTTATC+AGG | 0.253350 | 1_3:+3123610 | Msa0097320:CDS |
| GTATTGTGGCTTATACTTAT+TGG | 0.276567 | 1_3:+3124300 | Msa0097320:CDS |
| GAGAATGAAGCGGGTATAAT+AGG | 0.277243 | 1_3:-3122353 | None:intergenic |
| ATCTCAGACATGGGTGGTTT+TGG | 0.291220 | 1_3:+3123342 | Msa0097320:CDS |
| CTACCCTTGGCACTGCTAAA+TGG | 0.295554 | 1_3:+3123058 | Msa0097320:CDS |
| GGCACCTTATGCATTGGATT+TGG | 0.302310 | 1_3:-3123598 | None:intergenic |
| TGCTATGACAAGCATCTCTA+TGG | 0.338103 | 1_3:+3123934 | Msa0097320:CDS |
| AGTTCCTCCAGCGGTTCTTC+TGG | 0.341641 | 1_3:+3123574 | Msa0097320:CDS |
| AATCTCTTCTAAGTTCATTA+GGG | 0.345075 | 1_3:-3123029 | None:intergenic |
| ATTCAGTTGCATCTGGTGTT+GGG | 0.352535 | 1_3:+3123449 | Msa0097320:CDS |
| TAATGCTGCCGAAGAAGTTC+AGG | 0.352747 | 1_3:+3122651 | Msa0097320:CDS |
| TTCCAATGGCTGAATTGAAC+AGG | 0.368336 | 1_3:+3123737 | Msa0097320:CDS |
| AGGAATTTGAACGCGAAGTT+AGG | 0.368679 | 1_3:+3123191 | Msa0097320:CDS |
| AAGCGGGTATAATAGGATTA+AGG | 0.371922 | 1_3:-3122346 | None:intergenic |
| AAGAGTTCTGGTTAGTTTGT+TGG | 0.378142 | 1_3:-3122380 | None:intergenic |
| GGGTTGTTGCTTTCAGCTGC+CGG | 0.409203 | 1_3:-3123409 | None:intergenic |
| TTCATTAGGGTTCCACATGC+TGG | 0.412123 | 1_3:-3123016 | None:intergenic |
| TAGATCCGAAAGAAGAGTTC+TGG | 0.417811 | 1_3:-3122392 | None:intergenic |
| GTCTGAGATGCCTTTCTACC+TGG | 0.425960 | 1_3:-3123328 | None:intergenic |
| AAAATTGAATAACATTAAGT+TGG | 0.426618 | 1_3:-3122463 | None:intergenic |
| ATTGAAACAATTATTCGAAC+AGG | 0.428378 | 1_3:-3124018 | None:intergenic |
| GCTAGCGCTAGTGCTGATAT+TGG | 0.431805 | 1_3:+3123511 | Msa0097320:CDS |
| ACTAACCAGAACTCTTCTTT+CGG | 0.435173 | 1_3:+3122387 | Msa0097320:five_prime_UTR |
| CAGGCCGACTGTATTGCATT+TGG | 0.439081 | 1_3:-3123999 | None:intergenic |
| TGCAGATTCCTGAACTTCTT+CGG | 0.440150 | 1_3:-3122659 | None:intergenic |
| AATTCAGTTGCATCTGGTGT+TGG | 0.446579 | 1_3:+3123448 | Msa0097320:CDS |
| AAACTTGGCACCTTATGCAT+TGG | 0.454157 | 1_3:-3123604 | None:intergenic |
| ATCTGGTGTTGGGGAAGAAA+AGG | 0.470868 | 1_3:+3123459 | Msa0097320:CDS |
| ATTGAATAACATTAAGTTGG+TGG | 0.479527 | 1_3:-3122460 | None:intergenic |
| CTAAGAAATCCTGATAAACT+TGG | 0.485157 | 1_3:-3123619 | None:intergenic |
| AGGTATCACGTGGGCATCGT+AGG | 0.488724 | 1_3:+3123485 | Msa0097320:CDS |
| GAAGGATGGAATCTACATAT+AGG | 0.489714 | 1_3:+3122965 | Msa0097320:intron |
| ACCCTGTTCAATTCAGCCAT+TGG | 0.493805 | 1_3:-3123739 | None:intergenic |
| TTTGTTTCTTTCGGGAATGC+CGG | 0.494226 | 1_3:+3123390 | Msa0097320:CDS |
| TTGAATAACATTAAGTTGGT+GGG | 0.502002 | 1_3:-3122459 | None:intergenic |
| AGAGATTTACTTACTACCCT+TGG | 0.502779 | 1_3:+3123045 | Msa0097320:CDS |
| TGGTCCAAATCCAATGCATA+AGG | 0.505191 | 1_3:+3123594 | Msa0097320:CDS |
| CAATTTCGAAATTGATTCCA+CGG | 0.510644 | 1_3:-3123644 | None:intergenic |
| AACTTTGCAGTAATGTATTG+TGG | 0.510751 | 1_3:+3124286 | Msa0097320:intron |
| AACGAACCCTCCAGGTAGAA+AGG | 0.511463 | 1_3:+3123318 | Msa0097320:CDS |
| GTTAAGTTATAACAGAGACT+TGG | 0.526567 | 1_3:+3123213 | Msa0097320:CDS |
| AAGTTCAGGAATCTGCAGAT+AGG | 0.528981 | 1_3:+3122665 | Msa0097320:CDS |
| TTGACGCCATGAATTAAAAT+GGG | 0.533105 | 1_3:-3122597 | None:intergenic |
| TAGAAAGGCATCTCAGACAT+GGG | 0.536615 | 1_3:+3123333 | Msa0097320:CDS |
| GGCGTCAAGTCTTGATCGGT+GGG | 0.538666 | 1_3:+3122612 | Msa0097320:CDS |
| TTCAGTTGCATCTGGTGTTG+GGG | 0.546134 | 1_3:+3123450 | Msa0097320:CDS |
| ATCAGGATTTCTTAGTTCCG+TGG | 0.546937 | 1_3:+3123627 | Msa0097320:CDS |
| TTTCGAAATTGAAGTGGCCG+AGG | 0.547944 | 1_3:+3123656 | Msa0097320:CDS |
| TTAGATGAAACGAACCCTCC+AGG | 0.548770 | 1_3:+3123310 | Msa0097320:CDS |
| TGGGCGATGATGCAAGAACT+AGG | 0.548917 | 1_3:+3123233 | Msa0097320:CDS |
| AAATTGAAGTGGCCGAGGAA+TGG | 0.551739 | 1_3:+3123661 | Msa0097320:CDS |
| CCTTGGCACTGCTAAATGGC+AGG | 0.552190 | 1_3:+3123062 | Msa0097320:CDS |
| TTAAGTTATAACAGAGACTT+GGG | 0.559421 | 1_3:+3123214 | Msa0097320:CDS |
| ATTTGGACCAGAAGAACCGC+TGG | 0.562407 | 1_3:-3123581 | None:intergenic |
| GAGATGCCTTTCTACCTGGA+GGG | 0.562553 | 1_3:-3123324 | None:intergenic |
| GGTATCACGTGGGCATCGTA+GGG | 0.569652 | 1_3:+3123486 | Msa0097320:CDS |
| CTGCCATTTAGCAGTGCCAA+GGG | 0.578353 | 1_3:-3123061 | None:intergenic |
| TGAGATGCCTTTCTACCTGG+AGG | 0.581106 | 1_3:-3123325 | None:intergenic |
| GTAGAAAGGCATCTCAGACA+TGG | 0.584968 | 1_3:+3123332 | Msa0097320:CDS |
| CCTGCCATTTAGCAGTGCCA+AGG | 0.595735 | 1_3:-3123062 | None:intergenic |
| AATCAATTTCGAAATTGAAG+TGG | 0.596466 | 1_3:+3123650 | Msa0097320:CDS |
| TGGCGTCAAGTCTTGATCGG+TGG | 0.597897 | 1_3:+3122611 | Msa0097320:CDS |
| TCATGGCGTCAAGTCTTGAT+CGG | 0.599437 | 1_3:+3122608 | Msa0097320:exon |
| TGGTGTTGGGGAAGAAAAGG+AGG | 0.605467 | 1_3:+3123462 | Msa0097320:CDS |
| GATCATCATAAAGAAACTGA+TGG | 0.606309 | 1_3:+3123706 | Msa0097320:CDS |
| TGGAATCTACATATAGGACA+TGG | 0.629104 | 1_3:+3122971 | Msa0097320:CDS |
| ATGACAAGCATCTCTATGGA+TGG | 0.634464 | 1_3:+3123938 | Msa0097320:CDS |
| TGATGGTGCACTAATTCCAA+TGG | 0.646457 | 1_3:+3123723 | Msa0097320:CDS |
| AAGCATCTCTATGGATGGTG+TGG | 0.646497 | 1_3:+3123943 | Msa0097320:CDS |
| CCGACTTACCAATCAAGCAA+AGG | 0.648466 | 1_3:-3124050 | None:intergenic |
| TGTTGGGGAAGAAAAGGAGG+AGG | 0.649476 | 1_3:+3123465 | Msa0097320:CDS |
| AATACCAAATGCAATACAGT+CGG | 0.650211 | 1_3:+3123995 | Msa0097320:CDS |
| TCCAATGGCTGAATTGAACA+GGG | 0.653838 | 1_3:+3123738 | Msa0097320:CDS |
| AGCATTCATCAGAACTATCG+AGG | 0.656054 | 1_3:-3123915 | None:intergenic |
| CAGCAGTCTAGTTCCTCCAG+CGG | 0.660392 | 1_3:+3123565 | Msa0097320:CDS |
| GAAAAGGAGGAGGTATCACG+TGG | 0.667131 | 1_3:+3123475 | Msa0097320:CDS |
| CTGGAGGAACTAGACTGCTG+CGG | 0.671536 | 1_3:-3123562 | None:intergenic |
| TGGACCAGAAGAACCGCTGG+AGG | 0.681587 | 1_3:-3123578 | None:intergenic |
| TTATAGAAAACTGAAAACAG+TGG | 0.699925 | 1_3:+3123684 | Msa0097320:CDS |
| AAAGGCATCTCAGACATGGG+TGG | 0.701972 | 1_3:+3123336 | Msa0097320:CDS |
| AAAAGGAGGAGGTATCACGT+GGG | 0.768512 | 1_3:+3123476 | Msa0097320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATATTTTTTTACTTTGT+TGG | + | chr1_3:3122815-3122834 | Msa0097320:intron | 10.0% |
| !!! | AATTTTTATTATATAATCGT+GGG | - | chr1_3:3123432-3123451 | None:intergenic | 10.0% |
| !!! | TTTATATTTTTTTACTTTGT+TGG | + | chr1_3:3122815-3122834 | Msa0097320:intron | 10.0% |
| !!! | AATTTTTATTATATAATCGT+GGG | - | chr1_3:3123432-3123451 | None:intergenic | 10.0% |
| !! | AAAATTGAATAACATTAAGT+TGG | - | chr1_3:3122466-3122485 | None:intergenic | 15.0% |
| !!! | TATTCAATTTTATCATTCAT+TGG | + | chr1_3:3122475-3122494 | Msa0097320:five_prime_UTR | 15.0% |
| !! | TTTGAAAATTGATGAAAATT+TGG | - | chr1_3:3122566-3122585 | None:intergenic | 15.0% |
| !! | CTAATAATAAGAATGAAAAT+TGG | - | chr1_3:3122693-3122712 | None:intergenic | 15.0% |
| !!! | TGATATAGAAATTGAATTTT+TGG | + | chr1_3:3122779-3122798 | Msa0097320:intron | 15.0% |
| !!! | ATATGGTTTGATTTTTTTTT+TGG | + | chr1_3:3123152-3123171 | Msa0097320:intron | 15.0% |
| !!! | GAATTTTTATTATATAATCG+TGG | - | chr1_3:3123433-3123452 | None:intergenic | 15.0% |
| !! | AAAATTGAATAACATTAAGT+TGG | - | chr1_3:3122466-3122485 | None:intergenic | 15.0% |
| !!! | TATTCAATTTTATCATTCAT+TGG | + | chr1_3:3122475-3122494 | Msa0097320:five_prime_UTR | 15.0% |
| !! | TTTGAAAATTGATGAAAATT+TGG | - | chr1_3:3122566-3122585 | None:intergenic | 15.0% |
| !! | CTAATAATAAGAATGAAAAT+TGG | - | chr1_3:3122693-3122712 | None:intergenic | 15.0% |
| !!! | TGATATAGAAATTGAATTTT+TGG | + | chr1_3:3122779-3122798 | Msa0097320:intron | 15.0% |
| !!! | ATATGGTTTGATTTTTTTTT+TGG | + | chr1_3:3123152-3123171 | Msa0097320:intron | 15.0% |
| !!! | GAATTTTTATTATATAATCG+TGG | - | chr1_3:3123433-3123452 | None:intergenic | 15.0% |
| !!! | TTGAATAACATTAAGTTGGT+GGG | - | chr1_3:3122462-3122481 | None:intergenic | 25.0% |
| !!! | ATTGAATAACATTAAGTTGG+TGG | - | chr1_3:3122463-3122482 | None:intergenic | 25.0% |
| !! | AACAGAGATTTTCTCAATTA+GGG | + | chr1_3:3122505-3122524 | Msa0097320:five_prime_UTR | 25.0% |
| ! | TTGAATTCATGAAAATCTTG+AGG | + | chr1_3:3122841-3122860 | Msa0097320:intron | 25.0% |
| ! | TCACTAATGCTTGAAATTTA+TGG | + | chr1_3:3122912-3122931 | Msa0097320:intron | 25.0% |
| ! | TGTGTTTATTGTATTGTTGA+AGG | + | chr1_3:3122947-3122966 | Msa0097320:intron | 25.0% |
| ! | TTTATTGTATTGTTGAAGGA+TGG | + | chr1_3:3122951-3122970 | Msa0097320:intron | 25.0% |
| ! | AATCTCTTCTAAGTTCATTA+GGG | - | chr1_3:3123032-3123051 | None:intergenic | 25.0% |
| ! | AAATCTCTTCTAAGTTCATT+AGG | - | chr1_3:3123033-3123052 | None:intergenic | 25.0% |
| ! | AACTACATACATATTTAGCA+AGG | - | chr1_3:3123111-3123130 | None:intergenic | 25.0% |
| !! | TTTGTTTGAGATATTTGATG+AGG | + | chr1_3:3123129-3123148 | Msa0097320:intron | 25.0% |
| !!! | TGGTTTGATTTTTTTTTTGG+TGG | + | chr1_3:3123155-3123174 | Msa0097320:intron | 25.0% |
| !!! | GGTTTGATTTTTTTTTTGGT+GGG | + | chr1_3:3123156-3123175 | Msa0097320:intron | 25.0% |
| ! | TTAAGTTATAACAGAGACTT+GGG | + | chr1_3:3123214-3123233 | Msa0097320:CDS | 25.0% |
| ! | AATAAAAATTCAGTTGCATC+TGG | + | chr1_3:3123442-3123461 | Msa0097320:CDS | 25.0% |
| ! | AATCAATTTCGAAATTGAAG+TGG | + | chr1_3:3123650-3123669 | Msa0097320:CDS | 25.0% |
| ! | TTATAGAAAACTGAAAACAG+TGG | + | chr1_3:3123684-3123703 | Msa0097320:CDS | 25.0% |
| ! | AAAACAACAAAAGCAGAATA+AGG | - | chr1_3:3123769-3123788 | None:intergenic | 25.0% |
| ! | ATTGAAACAATTATTCGAAC+AGG | - | chr1_3:3124021-3124040 | None:intergenic | 25.0% |
| !! | ACTTACTACTTTAGAAATTG+AGG | + | chr1_3:3124142-3124161 | Msa0097320:intron | 25.0% |
| ! | ACAAAAACTTAGAAAAAGCA+TGG | - | chr1_3:3124259-3124278 | None:intergenic | 25.0% |
| !!! | TTGAATAACATTAAGTTGGT+GGG | - | chr1_3:3122462-3122481 | None:intergenic | 25.0% |
| !!! | ATTGAATAACATTAAGTTGG+TGG | - | chr1_3:3122463-3122482 | None:intergenic | 25.0% |
| !! | AACAGAGATTTTCTCAATTA+GGG | + | chr1_3:3122505-3122524 | Msa0097320:five_prime_UTR | 25.0% |
| ! | TTGAATTCATGAAAATCTTG+AGG | + | chr1_3:3122841-3122860 | Msa0097320:intron | 25.0% |
| ! | TCACTAATGCTTGAAATTTA+TGG | + | chr1_3:3122912-3122931 | Msa0097320:intron | 25.0% |
| ! | TGTGTTTATTGTATTGTTGA+AGG | + | chr1_3:3122947-3122966 | Msa0097320:intron | 25.0% |
| ! | TTTATTGTATTGTTGAAGGA+TGG | + | chr1_3:3122951-3122970 | Msa0097320:intron | 25.0% |
| ! | AATCTCTTCTAAGTTCATTA+GGG | - | chr1_3:3123032-3123051 | None:intergenic | 25.0% |
| ! | AAATCTCTTCTAAGTTCATT+AGG | - | chr1_3:3123033-3123052 | None:intergenic | 25.0% |
| ! | AACTACATACATATTTAGCA+AGG | - | chr1_3:3123111-3123130 | None:intergenic | 25.0% |
| !! | TTTGTTTGAGATATTTGATG+AGG | + | chr1_3:3123129-3123148 | Msa0097320:intron | 25.0% |
| !!! | TGGTTTGATTTTTTTTTTGG+TGG | + | chr1_3:3123155-3123174 | Msa0097320:intron | 25.0% |
| !!! | GGTTTGATTTTTTTTTTGGT+GGG | + | chr1_3:3123156-3123175 | Msa0097320:intron | 25.0% |
| ! | TTAAGTTATAACAGAGACTT+GGG | + | chr1_3:3123214-3123233 | Msa0097320:CDS | 25.0% |
| ! | AATAAAAATTCAGTTGCATC+TGG | + | chr1_3:3123442-3123461 | Msa0097320:CDS | 25.0% |
| ! | AATCAATTTCGAAATTGAAG+TGG | + | chr1_3:3123650-3123669 | Msa0097320:CDS | 25.0% |
| ! | TTATAGAAAACTGAAAACAG+TGG | + | chr1_3:3123684-3123703 | Msa0097320:CDS | 25.0% |
| ! | AAAACAACAAAAGCAGAATA+AGG | - | chr1_3:3123769-3123788 | None:intergenic | 25.0% |
| ! | ATTGAAACAATTATTCGAAC+AGG | - | chr1_3:3124021-3124040 | None:intergenic | 25.0% |
| !! | ACTTACTACTTTAGAAATTG+AGG | + | chr1_3:3124142-3124161 | Msa0097320:intron | 25.0% |
| ! | ACAAAAACTTAGAAAAAGCA+TGG | - | chr1_3:3124259-3124278 | None:intergenic | 25.0% |
| ! | CAACAGAGATTTTCTCAATT+AGG | + | chr1_3:3122504-3122523 | Msa0097320:five_prime_UTR | 30.0% |
| TTGACGCCATGAATTAAAAT+GGG | - | chr1_3:3122600-3122619 | None:intergenic | 30.0% | |
| TGAGATATTTGATGAGGATA+TGG | + | chr1_3:3123135-3123154 | Msa0097320:intron | 30.0% | |
| GTTAAGTTATAACAGAGACT+TGG | + | chr1_3:3123213-3123232 | Msa0097320:CDS | 30.0% | |
| ! | AGATTTTATCACTGCTATTG+AGG | + | chr1_3:3123261-3123280 | Msa0097320:CDS | 30.0% |
| CTAAGAAATCCTGATAAACT+TGG | - | chr1_3:3123622-3123641 | None:intergenic | 30.0% | |
| ! | CAATTTCGAAATTGATTCCA+CGG | - | chr1_3:3123647-3123666 | None:intergenic | 30.0% |
| ! | AGTTTTCTATAACCATTCCT+CGG | - | chr1_3:3123676-3123695 | None:intergenic | 30.0% |
| GATCATCATAAAGAAACTGA+TGG | + | chr1_3:3123706-3123725 | Msa0097320:CDS | 30.0% | |
| AATACCAAATGCAATACAGT+CGG | + | chr1_3:3123995-3124014 | Msa0097320:CDS | 30.0% | |
| !! | AAACAAGACCTTTGAGATAA+CGG | - | chr1_3:3124196-3124215 | None:intergenic | 30.0% |
| AACTTTGCAGTAATGTATTG+TGG | + | chr1_3:3124286-3124305 | Msa0097320:intron | 30.0% | |
| GTATTGTGGCTTATACTTAT+TGG | + | chr1_3:3124300-3124319 | Msa0097320:CDS | 30.0% | |
| ! | CAACAGAGATTTTCTCAATT+AGG | + | chr1_3:3122504-3122523 | Msa0097320:five_prime_UTR | 30.0% |
| TTGACGCCATGAATTAAAAT+GGG | - | chr1_3:3122600-3122619 | None:intergenic | 30.0% | |
| TGAGATATTTGATGAGGATA+TGG | + | chr1_3:3123135-3123154 | Msa0097320:intron | 30.0% | |
| GTTAAGTTATAACAGAGACT+TGG | + | chr1_3:3123213-3123232 | Msa0097320:CDS | 30.0% | |
| ! | AGATTTTATCACTGCTATTG+AGG | + | chr1_3:3123261-3123280 | Msa0097320:CDS | 30.0% |
| CTAAGAAATCCTGATAAACT+TGG | - | chr1_3:3123622-3123641 | None:intergenic | 30.0% | |
| ! | CAATTTCGAAATTGATTCCA+CGG | - | chr1_3:3123647-3123666 | None:intergenic | 30.0% |
| ! | AGTTTTCTATAACCATTCCT+CGG | - | chr1_3:3123676-3123695 | None:intergenic | 30.0% |
| GATCATCATAAAGAAACTGA+TGG | + | chr1_3:3123706-3123725 | Msa0097320:CDS | 30.0% | |
| AATACCAAATGCAATACAGT+CGG | + | chr1_3:3123995-3124014 | Msa0097320:CDS | 30.0% | |
| !! | AAACAAGACCTTTGAGATAA+CGG | - | chr1_3:3124196-3124215 | None:intergenic | 30.0% |
| AACTTTGCAGTAATGTATTG+TGG | + | chr1_3:3124286-3124305 | Msa0097320:intron | 30.0% | |
| GTATTGTGGCTTATACTTAT+TGG | + | chr1_3:3124300-3124319 | Msa0097320:CDS | 30.0% | |
| AAGCGGGTATAATAGGATTA+AGG | - | chr1_3:3122349-3122368 | None:intergenic | 35.0% | |
| !!! | TGTTGGTTTTGAGAATGAAG+CGG | - | chr1_3:3122366-3122385 | None:intergenic | 35.0% |
| !! | AAGAGTTCTGGTTAGTTTGT+TGG | - | chr1_3:3122383-3122402 | None:intergenic | 35.0% |
| ACTAACCAGAACTCTTCTTT+CGG | + | chr1_3:3122387-3122406 | Msa0097320:five_prime_UTR | 35.0% | |
| !!! | AAGCGACCCATTTTAATTCA+TGG | + | chr1_3:3122591-3122610 | Msa0097320:exon | 35.0% |
| CTTGACGCCATGAATTAAAA+TGG | - | chr1_3:3122601-3122620 | None:intergenic | 35.0% | |
| TCTTCGGCAGCATTAAAAAA+TGG | - | chr1_3:3122646-3122665 | None:intergenic | 35.0% | |
| GAAGGATGGAATCTACATAT+AGG | + | chr1_3:3122965-3122984 | Msa0097320:intron | 35.0% | |
| TGGAATCTACATATAGGACA+TGG | + | chr1_3:3122971-3122990 | Msa0097320:CDS | 35.0% | |
| AGAGATTTACTTACTACCCT+TGG | + | chr1_3:3123045-3123064 | Msa0097320:CDS | 35.0% | |
| !!! | CTAGTGCTGATATTGGTTTT+TGG | + | chr1_3:3123518-3123537 | Msa0097320:CDS | 35.0% |
| ! | GTTTTTCTCCTTTGCTTGAT+TGG | + | chr1_3:3124042-3124061 | Msa0097320:CDS | 35.0% |
| AAGCGGGTATAATAGGATTA+AGG | - | chr1_3:3122349-3122368 | None:intergenic | 35.0% | |
| !!! | TGTTGGTTTTGAGAATGAAG+CGG | - | chr1_3:3122366-3122385 | None:intergenic | 35.0% |
| !! | AAGAGTTCTGGTTAGTTTGT+TGG | - | chr1_3:3122383-3122402 | None:intergenic | 35.0% |
| ACTAACCAGAACTCTTCTTT+CGG | + | chr1_3:3122387-3122406 | Msa0097320:five_prime_UTR | 35.0% | |
| !!! | AAGCGACCCATTTTAATTCA+TGG | + | chr1_3:3122591-3122610 | Msa0097320:exon | 35.0% |
| CTTGACGCCATGAATTAAAA+TGG | - | chr1_3:3122601-3122620 | None:intergenic | 35.0% | |
| TCTTCGGCAGCATTAAAAAA+TGG | - | chr1_3:3122646-3122665 | None:intergenic | 35.0% | |
| GAAGGATGGAATCTACATAT+AGG | + | chr1_3:3122965-3122984 | Msa0097320:intron | 35.0% | |
| TGGAATCTACATATAGGACA+TGG | + | chr1_3:3122971-3122990 | Msa0097320:CDS | 35.0% | |
| AGAGATTTACTTACTACCCT+TGG | + | chr1_3:3123045-3123064 | Msa0097320:CDS | 35.0% | |
| !!! | CTAGTGCTGATATTGGTTTT+TGG | + | chr1_3:3123518-3123537 | Msa0097320:CDS | 35.0% |
| ! | GTTTTTCTCCTTTGCTTGAT+TGG | + | chr1_3:3124042-3124061 | Msa0097320:CDS | 35.0% |
| GAGAATGAAGCGGGTATAAT+AGG | - | chr1_3:3122356-3122375 | None:intergenic | 40.0% | |
| !!! | GTTGGTTTTGAGAATGAAGC+GGG | - | chr1_3:3122365-3122384 | None:intergenic | 40.0% |
| TAGATCCGAAAGAAGAGTTC+TGG | - | chr1_3:3122395-3122414 | None:intergenic | 40.0% | |
| TGCAGATTCCTGAACTTCTT+CGG | - | chr1_3:3122662-3122681 | None:intergenic | 40.0% | |
| AAGTTCAGGAATCTGCAGAT+AGG | + | chr1_3:3122665-3122684 | Msa0097320:CDS | 40.0% | |
| !!! | CATGCTGGAAGTATTTTTGG+TGG | - | chr1_3:3123004-3123023 | None:intergenic | 40.0% |
| !!! | CCACATGCTGGAAGTATTTT+TGG | - | chr1_3:3123007-3123026 | None:intergenic | 40.0% |
| CCAAAAATACTTCCAGCATG+TGG | + | chr1_3:3123004-3123023 | Msa0097320:CDS | 40.0% | |
| AGGAATTTGAACGCGAAGTT+AGG | + | chr1_3:3123191-3123210 | Msa0097320:CDS | 40.0% | |
| !! | TAGAAAGGCATCTCAGACAT+GGG | + | chr1_3:3123333-3123352 | Msa0097320:CDS | 40.0% |
| !! | CGAGCTTGCTTTGTTTCTTT+CGG | + | chr1_3:3123381-3123400 | Msa0097320:CDS | 40.0% |
| !! | GAGCTTGCTTTGTTTCTTTC+GGG | + | chr1_3:3123382-3123401 | Msa0097320:CDS | 40.0% |
| ! | TTTGTTTCTTTCGGGAATGC+CGG | + | chr1_3:3123390-3123409 | Msa0097320:CDS | 40.0% |
| AATTCAGTTGCATCTGGTGT+TGG | + | chr1_3:3123448-3123467 | Msa0097320:CDS | 40.0% | |
| ATTCAGTTGCATCTGGTGTT+GGG | + | chr1_3:3123449-3123468 | Msa0097320:CDS | 40.0% | |
| TGGTCCAAATCCAATGCATA+AGG | + | chr1_3:3123594-3123613 | Msa0097320:CDS | 40.0% | |
| AAACTTGGCACCTTATGCAT+TGG | - | chr1_3:3123607-3123626 | None:intergenic | 40.0% | |
| ! | CATAAGGTGCCAAGTTTATC+AGG | + | chr1_3:3123610-3123629 | Msa0097320:CDS | 40.0% |
| ATCAGGATTTCTTAGTTCCG+TGG | + | chr1_3:3123627-3123646 | Msa0097320:CDS | 40.0% | |
| ! | TGATGGTGCACTAATTCCAA+TGG | + | chr1_3:3123723-3123742 | Msa0097320:CDS | 40.0% |
| TTCCAATGGCTGAATTGAAC+AGG | + | chr1_3:3123737-3123756 | Msa0097320:CDS | 40.0% | |
| TCCAATGGCTGAATTGAACA+GGG | + | chr1_3:3123738-3123757 | Msa0097320:CDS | 40.0% | |
| ATCGTTGAAACTTCGTTGTG+TGG | + | chr1_3:3123793-3123812 | Msa0097320:intron | 40.0% | |
| AGCATTCATCAGAACTATCG+AGG | - | chr1_3:3123918-3123937 | None:intergenic | 40.0% | |
| TGCTATGACAAGCATCTCTA+TGG | + | chr1_3:3123934-3123953 | Msa0097320:CDS | 40.0% | |
| ATGACAAGCATCTCTATGGA+TGG | + | chr1_3:3123938-3123957 | Msa0097320:CDS | 40.0% | |
| CCTTTGCTTGATTGGTAAGT+CGG | + | chr1_3:3124050-3124069 | Msa0097320:intron | 40.0% | |
| GCAAGTAAATGCAAGTGTGT+CGG | - | chr1_3:3124098-3124117 | None:intergenic | 40.0% | |
| GCGACACTGCTAATGTAATA+AGG | - | chr1_3:3124174-3124193 | None:intergenic | 40.0% | |
| AGCATGGATGAATAGTGAGT+GGG | - | chr1_3:3124243-3124262 | None:intergenic | 40.0% | |
| AAGCATGGATGAATAGTGAG+TGG | - | chr1_3:3124244-3124263 | None:intergenic | 40.0% | |
| GAGAATGAAGCGGGTATAAT+AGG | - | chr1_3:3122356-3122375 | None:intergenic | 40.0% | |
| !!! | GTTGGTTTTGAGAATGAAGC+GGG | - | chr1_3:3122365-3122384 | None:intergenic | 40.0% |
| TAGATCCGAAAGAAGAGTTC+TGG | - | chr1_3:3122395-3122414 | None:intergenic | 40.0% | |
| TGCAGATTCCTGAACTTCTT+CGG | - | chr1_3:3122662-3122681 | None:intergenic | 40.0% | |
| AAGTTCAGGAATCTGCAGAT+AGG | + | chr1_3:3122665-3122684 | Msa0097320:CDS | 40.0% | |
| !!! | CATGCTGGAAGTATTTTTGG+TGG | - | chr1_3:3123004-3123023 | None:intergenic | 40.0% |
| !!! | CCACATGCTGGAAGTATTTT+TGG | - | chr1_3:3123007-3123026 | None:intergenic | 40.0% |
| CCAAAAATACTTCCAGCATG+TGG | + | chr1_3:3123004-3123023 | Msa0097320:CDS | 40.0% | |
| AGGAATTTGAACGCGAAGTT+AGG | + | chr1_3:3123191-3123210 | Msa0097320:CDS | 40.0% | |
| !! | TAGAAAGGCATCTCAGACAT+GGG | + | chr1_3:3123333-3123352 | Msa0097320:CDS | 40.0% |
| !! | CGAGCTTGCTTTGTTTCTTT+CGG | + | chr1_3:3123381-3123400 | Msa0097320:CDS | 40.0% |
| !! | GAGCTTGCTTTGTTTCTTTC+GGG | + | chr1_3:3123382-3123401 | Msa0097320:CDS | 40.0% |
| ! | TTTGTTTCTTTCGGGAATGC+CGG | + | chr1_3:3123390-3123409 | Msa0097320:CDS | 40.0% |
| AATTCAGTTGCATCTGGTGT+TGG | + | chr1_3:3123448-3123467 | Msa0097320:CDS | 40.0% | |
| ATTCAGTTGCATCTGGTGTT+GGG | + | chr1_3:3123449-3123468 | Msa0097320:CDS | 40.0% | |
| TGGTCCAAATCCAATGCATA+AGG | + | chr1_3:3123594-3123613 | Msa0097320:CDS | 40.0% | |
| AAACTTGGCACCTTATGCAT+TGG | - | chr1_3:3123607-3123626 | None:intergenic | 40.0% | |
| ! | CATAAGGTGCCAAGTTTATC+AGG | + | chr1_3:3123610-3123629 | Msa0097320:CDS | 40.0% |
| ATCAGGATTTCTTAGTTCCG+TGG | + | chr1_3:3123627-3123646 | Msa0097320:CDS | 40.0% | |
| ! | TGATGGTGCACTAATTCCAA+TGG | + | chr1_3:3123723-3123742 | Msa0097320:CDS | 40.0% |
| TTCCAATGGCTGAATTGAAC+AGG | + | chr1_3:3123737-3123756 | Msa0097320:CDS | 40.0% | |
| TCCAATGGCTGAATTGAACA+GGG | + | chr1_3:3123738-3123757 | Msa0097320:CDS | 40.0% | |
| ATCGTTGAAACTTCGTTGTG+TGG | + | chr1_3:3123793-3123812 | Msa0097320:intron | 40.0% | |
| AGCATTCATCAGAACTATCG+AGG | - | chr1_3:3123918-3123937 | None:intergenic | 40.0% | |
| TGCTATGACAAGCATCTCTA+TGG | + | chr1_3:3123934-3123953 | Msa0097320:CDS | 40.0% | |
| ATGACAAGCATCTCTATGGA+TGG | + | chr1_3:3123938-3123957 | Msa0097320:CDS | 40.0% | |
| CCTTTGCTTGATTGGTAAGT+CGG | + | chr1_3:3124050-3124069 | Msa0097320:intron | 40.0% | |
| GCAAGTAAATGCAAGTGTGT+CGG | - | chr1_3:3124098-3124117 | None:intergenic | 40.0% | |
| GCGACACTGCTAATGTAATA+AGG | - | chr1_3:3124174-3124193 | None:intergenic | 40.0% | |
| AGCATGGATGAATAGTGAGT+GGG | - | chr1_3:3124243-3124262 | None:intergenic | 40.0% | |
| AAGCATGGATGAATAGTGAG+TGG | - | chr1_3:3124244-3124263 | None:intergenic | 40.0% | |
| TCATGGCGTCAAGTCTTGAT+CGG | + | chr1_3:3122608-3122627 | Msa0097320:exon | 45.0% | |
| TAATGCTGCCGAAGAAGTTC+AGG | + | chr1_3:3122651-3122670 | Msa0097320:CDS | 45.0% | |
| TTCATTAGGGTTCCACATGC+TGG | - | chr1_3:3123019-3123038 | None:intergenic | 45.0% | |
| TTGGTGGGATATGCAGTTAG+AGG | + | chr1_3:3123171-3123190 | Msa0097320:intron | 45.0% | |
| TTAGATGAAACGAACCCTCC+AGG | + | chr1_3:3123310-3123329 | Msa0097320:CDS | 45.0% | |
| !! | GTAGAAAGGCATCTCAGACA+TGG | + | chr1_3:3123332-3123351 | Msa0097320:CDS | 45.0% |
| ! | ATCTCAGACATGGGTGGTTT+TGG | + | chr1_3:3123342-3123361 | Msa0097320:CDS | 45.0% |
| ! | TTCAGTTGCATCTGGTGTTG+GGG | + | chr1_3:3123450-3123469 | Msa0097320:CDS | 45.0% |
| ! | ATCTGGTGTTGGGGAAGAAA+AGG | + | chr1_3:3123459-3123478 | Msa0097320:CDS | 45.0% |
| !! | AAAAGGAGGAGGTATCACGT+GGG | + | chr1_3:3123476-3123495 | Msa0097320:CDS | 45.0% |
| GGCACCTTATGCATTGGATT+TGG | - | chr1_3:3123601-3123620 | None:intergenic | 45.0% | |
| TTTCGAAATTGAAGTGGCCG+AGG | + | chr1_3:3123656-3123675 | Msa0097320:CDS | 45.0% | |
| AAATTGAAGTGGCCGAGGAA+TGG | + | chr1_3:3123661-3123680 | Msa0097320:CDS | 45.0% | |
| ACCCTGTTCAATTCAGCCAT+TGG | - | chr1_3:3123742-3123761 | None:intergenic | 45.0% | |
| AAGCATCTCTATGGATGGTG+TGG | + | chr1_3:3123943-3123962 | Msa0097320:CDS | 45.0% | |
| CCGACTTACCAATCAAGCAA+AGG | - | chr1_3:3124053-3124072 | None:intergenic | 45.0% | |
| TCATGGCGTCAAGTCTTGAT+CGG | + | chr1_3:3122608-3122627 | Msa0097320:exon | 45.0% | |
| TAATGCTGCCGAAGAAGTTC+AGG | + | chr1_3:3122651-3122670 | Msa0097320:CDS | 45.0% | |
| TTCATTAGGGTTCCACATGC+TGG | - | chr1_3:3123019-3123038 | None:intergenic | 45.0% | |
| TTGGTGGGATATGCAGTTAG+AGG | + | chr1_3:3123171-3123190 | Msa0097320:intron | 45.0% | |
| TTAGATGAAACGAACCCTCC+AGG | + | chr1_3:3123310-3123329 | Msa0097320:CDS | 45.0% | |
| !! | GTAGAAAGGCATCTCAGACA+TGG | + | chr1_3:3123332-3123351 | Msa0097320:CDS | 45.0% |
| ! | ATCTCAGACATGGGTGGTTT+TGG | + | chr1_3:3123342-3123361 | Msa0097320:CDS | 45.0% |
| ! | TTCAGTTGCATCTGGTGTTG+GGG | + | chr1_3:3123450-3123469 | Msa0097320:CDS | 45.0% |
| ! | ATCTGGTGTTGGGGAAGAAA+AGG | + | chr1_3:3123459-3123478 | Msa0097320:CDS | 45.0% |
| !! | AAAAGGAGGAGGTATCACGT+GGG | + | chr1_3:3123476-3123495 | Msa0097320:CDS | 45.0% |
| GGCACCTTATGCATTGGATT+TGG | - | chr1_3:3123601-3123620 | None:intergenic | 45.0% | |
| TTTCGAAATTGAAGTGGCCG+AGG | + | chr1_3:3123656-3123675 | Msa0097320:CDS | 45.0% | |
| AAATTGAAGTGGCCGAGGAA+TGG | + | chr1_3:3123661-3123680 | Msa0097320:CDS | 45.0% | |
| ACCCTGTTCAATTCAGCCAT+TGG | - | chr1_3:3123742-3123761 | None:intergenic | 45.0% | |
| AAGCATCTCTATGGATGGTG+TGG | + | chr1_3:3123943-3123962 | Msa0097320:CDS | 45.0% | |
| CCGACTTACCAATCAAGCAA+AGG | - | chr1_3:3124053-3124072 | None:intergenic | 45.0% | |
| !! | TTGAAAAAAAAAAAATAAAA+TGG | - | chr1_3:3122432-3122451 | None:intergenic | 5.0% |
| !!! | TTTTATTTTTTATTGAAAAA+AGG | + | chr1_3:3123858-3123877 | Msa0097320:intron | 5.0% |
| !!! | TTTATTTTTTATTGAAAAAA+GGG | + | chr1_3:3123859-3123878 | Msa0097320:intron | 5.0% |
| !! | TTGAAAAAAAAAAAATAAAA+TGG | - | chr1_3:3122432-3122451 | None:intergenic | 5.0% |
| !!! | TTTTATTTTTTATTGAAAAA+AGG | + | chr1_3:3123858-3123877 | Msa0097320:intron | 5.0% |
| !!! | TTTATTTTTTATTGAAAAAA+GGG | + | chr1_3:3123859-3123878 | Msa0097320:intron | 5.0% |
| CTACCCTTGGCACTGCTAAA+TGG | + | chr1_3:3123058-3123077 | Msa0097320:CDS | 50.0% | |
| ! | CTGCCATTTAGCAGTGCCAA+GGG | - | chr1_3:3123064-3123083 | None:intergenic | 50.0% |
| TGGGCGATGATGCAAGAACT+AGG | + | chr1_3:3123233-3123252 | Msa0097320:CDS | 50.0% | |
| AACGAACCCTCCAGGTAGAA+AGG | + | chr1_3:3123318-3123337 | Msa0097320:CDS | 50.0% | |
| GAGATGCCTTTCTACCTGGA+GGG | - | chr1_3:3123327-3123346 | None:intergenic | 50.0% | |
| TGAGATGCCTTTCTACCTGG+AGG | - | chr1_3:3123328-3123347 | None:intergenic | 50.0% | |
| ! | GTCTGAGATGCCTTTCTACC+TGG | - | chr1_3:3123331-3123350 | None:intergenic | 50.0% |
| !! | AAAGGCATCTCAGACATGGG+TGG | + | chr1_3:3123336-3123355 | Msa0097320:CDS | 50.0% |
| !!! | ACATGGGTGGTTTTGGACGA+AGG | + | chr1_3:3123349-3123368 | Msa0097320:CDS | 50.0% |
| ! | TGGTGTTGGGGAAGAAAAGG+AGG | + | chr1_3:3123462-3123481 | Msa0097320:CDS | 50.0% |
| TGTTGGGGAAGAAAAGGAGG+AGG | + | chr1_3:3123465-3123484 | Msa0097320:CDS | 50.0% | |
| !! | GAAAAGGAGGAGGTATCACG+TGG | + | chr1_3:3123475-3123494 | Msa0097320:CDS | 50.0% |
| !! | GCTAGCGCTAGTGCTGATAT+TGG | + | chr1_3:3123511-3123530 | Msa0097320:CDS | 50.0% |
| ATTTGGACCAGAAGAACCGC+TGG | - | chr1_3:3123584-3123603 | None:intergenic | 50.0% | |
| CAGGCCGACTGTATTGCATT+TGG | - | chr1_3:3124002-3124021 | None:intergenic | 50.0% | |
| CAGTGTCGCCGTTATCTCAA+AGG | + | chr1_3:3124185-3124204 | Msa0097320:intron | 50.0% | |
| CTACCCTTGGCACTGCTAAA+TGG | + | chr1_3:3123058-3123077 | Msa0097320:CDS | 50.0% | |
| ! | CTGCCATTTAGCAGTGCCAA+GGG | - | chr1_3:3123064-3123083 | None:intergenic | 50.0% |
| TGGGCGATGATGCAAGAACT+AGG | + | chr1_3:3123233-3123252 | Msa0097320:CDS | 50.0% | |
| AACGAACCCTCCAGGTAGAA+AGG | + | chr1_3:3123318-3123337 | Msa0097320:CDS | 50.0% | |
| GAGATGCCTTTCTACCTGGA+GGG | - | chr1_3:3123327-3123346 | None:intergenic | 50.0% | |
| TGAGATGCCTTTCTACCTGG+AGG | - | chr1_3:3123328-3123347 | None:intergenic | 50.0% | |
| ! | GTCTGAGATGCCTTTCTACC+TGG | - | chr1_3:3123331-3123350 | None:intergenic | 50.0% |
| !! | AAAGGCATCTCAGACATGGG+TGG | + | chr1_3:3123336-3123355 | Msa0097320:CDS | 50.0% |
| !!! | ACATGGGTGGTTTTGGACGA+AGG | + | chr1_3:3123349-3123368 | Msa0097320:CDS | 50.0% |
| ! | TGGTGTTGGGGAAGAAAAGG+AGG | + | chr1_3:3123462-3123481 | Msa0097320:CDS | 50.0% |
| TGTTGGGGAAGAAAAGGAGG+AGG | + | chr1_3:3123465-3123484 | Msa0097320:CDS | 50.0% | |
| !! | GAAAAGGAGGAGGTATCACG+TGG | + | chr1_3:3123475-3123494 | Msa0097320:CDS | 50.0% |
| !! | GCTAGCGCTAGTGCTGATAT+TGG | + | chr1_3:3123511-3123530 | Msa0097320:CDS | 50.0% |
| ATTTGGACCAGAAGAACCGC+TGG | - | chr1_3:3123584-3123603 | None:intergenic | 50.0% | |
| CAGGCCGACTGTATTGCATT+TGG | - | chr1_3:3124002-3124021 | None:intergenic | 50.0% | |
| CAGTGTCGCCGTTATCTCAA+AGG | + | chr1_3:3124185-3124204 | Msa0097320:intron | 50.0% | |
| TGGCGTCAAGTCTTGATCGG+TGG | + | chr1_3:3122611-3122630 | Msa0097320:CDS | 55.0% | |
| GGCGTCAAGTCTTGATCGGT+GGG | + | chr1_3:3122612-3122631 | Msa0097320:CDS | 55.0% | |
| ! | CCTGCCATTTAGCAGTGCCA+AGG | - | chr1_3:3123065-3123084 | None:intergenic | 55.0% |
| CCTTGGCACTGCTAAATGGC+AGG | + | chr1_3:3123062-3123081 | Msa0097320:CDS | 55.0% | |
| !! | GGGTTGTTGCTTTCAGCTGC+CGG | - | chr1_3:3123412-3123431 | None:intergenic | 55.0% |
| ! | AGGTATCACGTGGGCATCGT+AGG | + | chr1_3:3123485-3123504 | Msa0097320:CDS | 55.0% |
| ! | GGTATCACGTGGGCATCGTA+GGG | + | chr1_3:3123486-3123505 | Msa0097320:CDS | 55.0% |
| CTGGAGGAACTAGACTGCTG+CGG | - | chr1_3:3123565-3123584 | None:intergenic | 55.0% | |
| ! | CAGCAGTCTAGTTCCTCCAG+CGG | + | chr1_3:3123565-3123584 | Msa0097320:CDS | 55.0% |
| AGTTCCTCCAGCGGTTCTTC+TGG | + | chr1_3:3123574-3123593 | Msa0097320:CDS | 55.0% | |
| TGGCGTCAAGTCTTGATCGG+TGG | + | chr1_3:3122611-3122630 | Msa0097320:CDS | 55.0% | |
| GGCGTCAAGTCTTGATCGGT+GGG | + | chr1_3:3122612-3122631 | Msa0097320:CDS | 55.0% | |
| ! | CCTGCCATTTAGCAGTGCCA+AGG | - | chr1_3:3123065-3123084 | None:intergenic | 55.0% |
| CCTTGGCACTGCTAAATGGC+AGG | + | chr1_3:3123062-3123081 | Msa0097320:CDS | 55.0% | |
| !! | GGGTTGTTGCTTTCAGCTGC+CGG | - | chr1_3:3123412-3123431 | None:intergenic | 55.0% |
| ! | AGGTATCACGTGGGCATCGT+AGG | + | chr1_3:3123485-3123504 | Msa0097320:CDS | 55.0% |
| ! | GGTATCACGTGGGCATCGTA+GGG | + | chr1_3:3123486-3123505 | Msa0097320:CDS | 55.0% |
| CTGGAGGAACTAGACTGCTG+CGG | - | chr1_3:3123565-3123584 | None:intergenic | 55.0% | |
| ! | CAGCAGTCTAGTTCCTCCAG+CGG | + | chr1_3:3123565-3123584 | Msa0097320:CDS | 55.0% |
| AGTTCCTCCAGCGGTTCTTC+TGG | + | chr1_3:3123574-3123593 | Msa0097320:CDS | 55.0% | |
| TGGACCAGAAGAACCGCTGG+AGG | - | chr1_3:3123581-3123600 | None:intergenic | 60.0% | |
| TGGACCAGAAGAACCGCTGG+AGG | - | chr1_3:3123581-3123600 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 3122308 | 3124339 | 3122308 | ID=Msa0097320;Name=Msa0097320 |
| chr1_3 | mRNA | 3122308 | 3124339 | 3122308 | ID=Msa0097320-mRNA-1;Parent=Msa0097320;Name=Msa0097320-mRNA-1;_AED=0.22;_eAED=0.22;_QI=302|0.75|0.8|1|0.75|0.8|5|0|330 |
| chr1_3 | exon | 3122308 | 3122686 | 3122308 | ID=Msa0097320-mRNA-1:exon:901;Parent=Msa0097320-mRNA-1 |
| chr1_3 | exon | 3122969 | 3123083 | 3122969 | ID=Msa0097320-mRNA-1:exon:902;Parent=Msa0097320-mRNA-1 |
| chr1_3 | exon | 3123187 | 3123759 | 3123187 | ID=Msa0097320-mRNA-1:exon:903;Parent=Msa0097320-mRNA-1 |
| chr1_3 | exon | 3123880 | 3124063 | 3123880 | ID=Msa0097320-mRNA-1:exon:904;Parent=Msa0097320-mRNA-1 |
| chr1_3 | exon | 3124296 | 3124339 | 3124296 | ID=Msa0097320-mRNA-1:exon:905;Parent=Msa0097320-mRNA-1 |
| chr1_3 | five_prime_UTR | 3122308 | 3122609 | 3122308 | ID=Msa0097320-mRNA-1:five_prime_utr;Parent=Msa0097320-mRNA-1 |
| chr1_3 | CDS | 3122610 | 3122686 | 3122610 | ID=Msa0097320-mRNA-1:cds;Parent=Msa0097320-mRNA-1 |
| chr1_3 | CDS | 3122969 | 3123083 | 3122969 | ID=Msa0097320-mRNA-1:cds;Parent=Msa0097320-mRNA-1 |
| chr1_3 | CDS | 3123187 | 3123759 | 3123187 | ID=Msa0097320-mRNA-1:cds;Parent=Msa0097320-mRNA-1 |
| chr1_3 | CDS | 3123880 | 3124063 | 3123880 | ID=Msa0097320-mRNA-1:cds;Parent=Msa0097320-mRNA-1 |
| chr1_3 | CDS | 3124296 | 3124339 | 3124296 | ID=Msa0097320-mRNA-1:cds;Parent=Msa0097320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
