Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0097230 | XP_003589106.1 | 96.573 | 321 | 11 | 0 | 1 | 321 | 1 | 321 | 0.0 | 650 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0097230 | Q2HRK3 | 96.573 | 321 | 11 | 0 | 1 | 321 | 1 | 321 | 0.0 | 650 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0018120 | Msa0097230 | 0.990511 | 5.528921e-183 | -8.615850e-47 |
| Msa0052190 | Msa0097230 | 0.902178 | 1.264070e-78 | -8.615850e-47 |
| Msa0097230 | Msa0097320 | 0.903623 | 2.865920e-79 | -8.615850e-47 |
| Msa0097230 | Msa0968150 | 0.867097 | 1.758840e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0097230 | MtrunA17_Chr1g0152781 | 96.573 | 321 | 11 | 0 | 1 | 321 | 1 | 321 | 0.0 | 650 |
| Msa0097230 | MtrunA17_Chr3g0134601 | 59.118 | 340 | 114 | 6 | 1 | 324 | 1 | 331 | 5.63e-129 | 373 |
| Msa0097230 | MtrunA17_Chr4g0072471 | 57.971 | 138 | 56 | 2 | 1 | 137 | 3 | 139 | 2.74e-40 | 145 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0097230 | AT1G27700.1 | 44.237 | 321 | 152 | 4 | 1 | 321 | 1 | 294 | 6.35e-89 | 270 |
| Msa0097230 | AT2G18860.3 | 50.360 | 139 | 58 | 3 | 1 | 137 | 3 | 132 | 6.71e-35 | 129 |
| Msa0097230 | AT2G18860.1 | 50.360 | 139 | 58 | 3 | 1 | 137 | 3 | 132 | 1.84e-34 | 129 |
| Msa0097230 | AT4G30240.1 | 39.823 | 226 | 122 | 6 | 1 | 218 | 3 | 222 | 2.37e-34 | 129 |
| Msa0097230 | AT2G18860.2 | 49.123 | 114 | 47 | 3 | 26 | 137 | 9 | 113 | 4.80e-24 | 100 |
Find 98 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAAAATTGATGAAAATT+TGG | 0.141221 | 1_3:+3026982 | None:intergenic |
| CTTGACGCCATGAATTAAAA+TGG | 0.192881 | 1_3:+3026947 | None:intergenic |
| GAGCTTGCTTTGTTTCTTTC+GGG | 0.219757 | 1_3:-3026164 | Msa0097230:CDS |
| CGAGCTTGCTTTGTTTCTTT+CGG | 0.245739 | 1_3:-3026165 | Msa0097230:CDS |
| AAATCTCTTCTAAGTTCATT+AGG | 0.250806 | 1_3:+3026515 | None:intergenic |
| CATAAGGTGCCAAGTTTATC+AGG | 0.253350 | 1_3:-3025936 | Msa0097230:CDS |
| GAGAATGAAGCGGGTATAAT+AGG | 0.277243 | 1_3:+3027190 | None:intergenic |
| ATTTACTGCTTCAGTTGTTT+TGG | 0.278796 | 1_3:-3023026 | Msa0097230:intron |
| ATCTCAGACATGGGTGGTTT+TGG | 0.291220 | 1_3:-3026204 | Msa0097230:CDS |
| CTACCCTTGGCACTGCTAAA+TGG | 0.295554 | 1_3:-3026487 | Msa0097230:CDS |
| CTGTCCTCCTCAACCTAATA+AGG | 0.302107 | 1_3:-3022812 | Msa0097230:CDS |
| GGCACCTTATGCATTGGATT+TGG | 0.302310 | 1_3:+3025948 | Msa0097240:CDS |
| TGCTATGACAAGCATCTCTA+TGG | 0.338103 | 1_3:-3025612 | Msa0097230:CDS |
| AGTTCCTCCAGCGGTTCTTC+TGG | 0.341641 | 1_3:-3025972 | Msa0097230:CDS |
| AATCTCTTCTAAGTTCATTA+GGG | 0.345075 | 1_3:+3026516 | None:intergenic |
| ATTCAGTTGCATCTGGTGTT+GGG | 0.352535 | 1_3:-3026097 | Msa0097230:CDS |
| TAATGCTGCCGAAGAAGTTC+AGG | 0.352747 | 1_3:-3026894 | Msa0097230:CDS |
| GTGGATTGGAGATCCTTATT+AGG | 0.363498 | 1_3:+3022799 | None:intergenic |
| AAGAGTTCTGGTTAGTTTGT+TGG | 0.366295 | 1_3:+3027163 | None:intergenic |
| TTCCAATGGCTGAATTGAAC+AGG | 0.368336 | 1_3:-3025809 | Msa0097230:CDS |
| AGGAATTTGAACGCGAAGTT+AGG | 0.368679 | 1_3:-3026355 | Msa0097230:CDS |
| AAGCGGGTATAATAGGATTA+AGG | 0.371922 | 1_3:+3027197 | None:intergenic |
| CACGGAAGGATTTCAATGTT+GGG | 0.402129 | 1_3:+3022757 | None:intergenic |
| GGGTTGTTGCTTTCAGCTGC+CGG | 0.409203 | 1_3:+3026137 | Msa0097240:CDS |
| TTCATTAGGGTTCCACATGC+TGG | 0.412123 | 1_3:+3026529 | None:intergenic |
| GTCTGAGATGCCTTTCTACC+TGG | 0.425960 | 1_3:+3026218 | None:intergenic |
| AAAATTGAATAACATTAAGT+TGG | 0.426618 | 1_3:+3027082 | None:intergenic |
| TAGATCCGAGAGAAGAGTTC+TGG | 0.426631 | 1_3:+3027151 | None:intergenic |
| ATTGAAACAATTATTCGAAC+AGG | 0.428378 | 1_3:+3025528 | Msa0097240:intron |
| GCTAGCGCTAGTGCTGATAT+TGG | 0.431805 | 1_3:-3026035 | Msa0097230:CDS |
| TCACGGAAGGATTTCAATGT+TGG | 0.434086 | 1_3:+3022756 | None:intergenic |
| TGGAGATCCTTATTAGGTTG+AGG | 0.434955 | 1_3:+3022805 | None:intergenic |
| CAGGCCGACTGTATTGCATT+TGG | 0.439081 | 1_3:+3025547 | Msa0097240:intron |
| TGCAGATTCCTGAACTTCTT+CGG | 0.440150 | 1_3:+3026886 | None:intergenic |
| AATTCAGTTGCATCTGGTGT+TGG | 0.446579 | 1_3:-3026098 | Msa0097230:CDS |
| AAACTTGGCACCTTATGCAT+TGG | 0.454157 | 1_3:+3025942 | Msa0097240:CDS |
| ATCTGGTGTTGGGGAAGAAA+AGG | 0.470868 | 1_3:-3026087 | Msa0097230:CDS |
| GGCTATAGTGCTGAGGGTGC+AGG | 0.475463 | 1_3:-3022977 | Msa0097230:CDS |
| ATTGAATAACATTAAGTTGG+TGG | 0.479527 | 1_3:+3027085 | None:intergenic |
| CTAAGAAATCCTGATAAACT+TGG | 0.485157 | 1_3:+3025927 | Msa0097240:intron |
| AGGTATCACGTGGGCATCGT+AGG | 0.488724 | 1_3:-3026061 | Msa0097230:CDS |
| GAAGGATGGAATCTACATAT+AGG | 0.489714 | 1_3:-3026580 | Msa0097230:intron |
| ACCCTGTTCAATTCAGCCAT+TGG | 0.493805 | 1_3:+3025807 | Msa0097240:intron |
| TTTGTTTCTTTCGGGAATGC+CGG | 0.494226 | 1_3:-3026156 | Msa0097230:CDS |
| TTGAATAACATTAAGTTGGT+GGG | 0.502002 | 1_3:+3027086 | None:intergenic |
| AGAGATTTACTTACTACCCT+TGG | 0.502779 | 1_3:-3026500 | Msa0097230:CDS |
| TGGTCCAAATCCAATGCATA+AGG | 0.505191 | 1_3:-3025952 | Msa0097230:CDS |
| CAATTTCGAAATTGATTCCA+CGG | 0.510644 | 1_3:+3025902 | Msa0097240:intron |
| AACGAACCCTCCAGGTAGAA+AGG | 0.511463 | 1_3:-3026228 | Msa0097230:CDS |
| AGTGCTGAGGGTGCAGGAAG+AGG | 0.514309 | 1_3:-3022971 | Msa0097230:intron |
| GTTAAGTTATAACAGAGACT+TGG | 0.526567 | 1_3:-3026333 | Msa0097230:CDS |
| AAGTTCAGGAATCTGCAGAT+AGG | 0.528981 | 1_3:-3026880 | Msa0097230:intron |
| TTGACGCCATGAATTAAAAT+GGG | 0.533105 | 1_3:+3026948 | None:intergenic |
| TAGAAAGGCATCTCAGACAT+GGG | 0.536615 | 1_3:-3026213 | Msa0097230:CDS |
| GGCGTCAAGTCTTGATCGGT+GGG | 0.538666 | 1_3:-3026933 | Msa0097230:CDS |
| TTCAGTTGCATCTGGTGTTG+GGG | 0.546134 | 1_3:-3026096 | Msa0097230:CDS |
| ATCAGGATTTCTTAGTTCCG+TGG | 0.546937 | 1_3:-3025919 | Msa0097230:CDS |
| CAATCCACCACAGCTAAAAG+TGG | 0.547338 | 1_3:-3022784 | Msa0097230:CDS |
| TTTCGAAATTGAAGTGGCCG+AGG | 0.547944 | 1_3:-3025890 | Msa0097230:CDS |
| TTAGATGAAACGAACCCTCC+AGG | 0.548770 | 1_3:-3026236 | Msa0097230:CDS |
| TGGGCGATGATGCAAGAACT+AGG | 0.548917 | 1_3:-3026313 | Msa0097230:CDS |
| AAATTGAAGTGGCCGAGGAA+TGG | 0.551739 | 1_3:-3025885 | Msa0097230:CDS |
| CCTTGGCACTGCTAAATGGC+AGG | 0.552190 | 1_3:-3026483 | Msa0097230:intron |
| TTAAGTTATAACAGAGACTT+GGG | 0.559421 | 1_3:-3026332 | Msa0097230:CDS |
| ATTTGGACCAGAAGAACCGC+TGG | 0.562407 | 1_3:+3025965 | Msa0097240:CDS |
| GAGATGCCTTTCTACCTGGA+GGG | 0.562553 | 1_3:+3026222 | None:intergenic |
| GGTATCACGTGGGCATCGTA+GGG | 0.569652 | 1_3:-3026060 | Msa0097230:CDS |
| CTGCCATTTAGCAGTGCCAA+GGG | 0.578353 | 1_3:+3026484 | None:intergenic |
| TGAGATGCCTTTCTACCTGG+AGG | 0.581106 | 1_3:+3026221 | None:intergenic |
| GTTGAGGAGGACAGTGCTGA+TGG | 0.584018 | 1_3:+3022821 | None:intergenic |
| GTAGAAAGGCATCTCAGACA+TGG | 0.584968 | 1_3:-3026214 | Msa0097230:CDS |
| ACTAACCAGAACTCTTCTCT+CGG | 0.593288 | 1_3:-3027156 | Msa0097230:five_prime_UTR |
| CCTGCCATTTAGCAGTGCCA+AGG | 0.595735 | 1_3:+3026483 | None:intergenic |
| AATCAATTTCGAAATTGAAG+TGG | 0.596466 | 1_3:-3025896 | Msa0097230:CDS |
| TGGCGTCAAGTCTTGATCGG+TGG | 0.597897 | 1_3:-3026934 | Msa0097230:CDS |
| AGATCCTTATTAGGTTGAGG+AGG | 0.599142 | 1_3:+3022808 | None:intergenic |
| TCATGGCGTCAAGTCTTGAT+CGG | 0.599437 | 1_3:-3026937 | Msa0097230:CDS |
| TGGTGTTGGGGAAGAAAAGG+AGG | 0.605467 | 1_3:-3026084 | Msa0097230:CDS |
| GATCATCATAAAGAAACTGA+TGG | 0.606309 | 1_3:-3025840 | Msa0097230:CDS |
| TTGAATGGCTATAGTGCTGA+GGG | 0.623017 | 1_3:-3022983 | Msa0097230:CDS |
| CCACAATCTCTCATCACGGA+AGG | 0.627674 | 1_3:+3022743 | None:intergenic |
| TGGAATCTACATATAGGACA+TGG | 0.629104 | 1_3:-3026574 | Msa0097230:CDS |
| ATGACAAGCATCTCTATGGA+TGG | 0.634464 | 1_3:-3025608 | Msa0097230:CDS |
| TTTGAATGGCTATAGTGCTG+AGG | 0.640185 | 1_3:-3022984 | Msa0097230:CDS |
| TGATGGTGCACTAATTCCAA+TGG | 0.646457 | 1_3:-3025823 | Msa0097230:CDS |
| AAGCATCTCTATGGATGGTG+TGG | 0.646497 | 1_3:-3025603 | Msa0097230:CDS |
| CCGACTTACCAATCAAGCAA+AGG | 0.648466 | 1_3:+3025496 | Msa0097240:intron |
| TGTTGGGGAAGAAAAGGAGG+AGG | 0.649476 | 1_3:-3026081 | Msa0097230:CDS |
| AATACCAAATGCAATACAGT+CGG | 0.650211 | 1_3:-3025551 | Msa0097230:CDS |
| TCCAATGGCTGAATTGAACA+GGG | 0.653838 | 1_3:-3025808 | Msa0097230:intron |
| AGCATTCATCAGAACTATCG+AGG | 0.656054 | 1_3:+3025631 | Msa0097240:intron |
| CAGCAGTCTAGTTCCTCCAG+CGG | 0.660392 | 1_3:-3025981 | Msa0097230:CDS |
| GAAAAGGAGGAGGTATCACG+TGG | 0.667131 | 1_3:-3026071 | Msa0097230:CDS |
| CTGGAGGAACTAGACTGCTG+CGG | 0.671536 | 1_3:+3025984 | Msa0097240:CDS |
| TGGACCAGAAGAACCGCTGG+AGG | 0.681587 | 1_3:+3025968 | Msa0097240:CDS |
| TTATAGAAAACTGAAAACAG+TGG | 0.699925 | 1_3:-3025862 | Msa0097230:CDS |
| AAAGGCATCTCAGACATGGG+TGG | 0.701972 | 1_3:-3026210 | Msa0097230:CDS |
| AAAAGGAGGAGGTATCACGT+GGG | 0.768512 | 1_3:-3026070 | Msa0097230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGAAAACAAAAATAAAA+TGG | + | chr1_3:3022871-3022890 | None:intergenic | 10.0% |
| !!! | TTTATATTTTTTTACTTTGT+TGG | - | chr1_3:3023252-3023271 | Msa0097230:intron | 10.0% |
| !!! | AATTTTTATTATATAATCGT+GGG | + | chr1_3:3023868-3023887 | Msa0097240:intron | 10.0% |
| !! | AAAATTGAATAACATTAAGT+TGG | + | chr1_3:3022903-3022922 | None:intergenic | 15.0% |
| !!! | TATTCAATTTTATCATTCAT+TGG | - | chr1_3:3022912-3022931 | Msa0097230:intron | 15.0% |
| !! | TTTGAAAATTGATGAAAATT+TGG | + | chr1_3:3023003-3023022 | None:intergenic | 15.0% |
| !! | CTAATAATAAGAATGAAAAT+TGG | + | chr1_3:3023130-3023149 | None:intergenic | 15.0% |
| !!! | TGATATAGAAATTGAATTTT+TGG | - | chr1_3:3023216-3023235 | Msa0097230:intron | 15.0% |
| !!! | GAATTTTTATTATATAATCG+TGG | + | chr1_3:3023869-3023888 | Msa0097240:intron | 15.0% |
| !!! | ATTTTTAGTTCTTAGAATTA+TGG | - | chr1_3:3025520-3025539 | Msa0097230:CDS | 15.0% |
| !!! | TTTAGTTTTAAAAAGAAAGT+TGG | + | chr1_3:3026212-3026231 | None:intergenic | 15.0% |
| !!! | TATTTAATACTTTTTTCAGA+TGG | + | chr1_3:3026511-3026530 | None:intergenic | 15.0% |
| !! | ATTAATTATTCCTTCTATAA+TGG | - | chr1_3:3026720-3026739 | Msa0097230:intron | 15.0% |
| !! | AAAAGTGAATGAATTAAATT+TGG | + | chr1_3:3026809-3026828 | None:intergenic | 15.0% |
| !! | AAATCAATAGTTAGATAAAT+TGG | - | chr1_3:3026837-3026856 | Msa0097230:intron | 15.0% |
| !! | AAAAAATGATGTGATAAAAG+AGG | - | chr1_3:3025315-3025334 | Msa0097230:intron | 20.0% |
| !! | AAAAATGATGTGATAAAAGA+GGG | - | chr1_3:3025316-3025335 | Msa0097230:intron | 20.0% |
| !! | ATACCAAATAACTAATAGAA+GGG | - | chr1_3:3025459-3025478 | Msa0097230:intron | 20.0% |
| !!! | AATTCTGTTTTTGAAATTGT+TGG | - | chr1_3:3025490-3025509 | Msa0097230:intron | 20.0% |
| !!! | ATTCTGTTTTTGAAATTGTT+GGG | - | chr1_3:3025491-3025510 | Msa0097230:intron | 20.0% |
| !! | CTAACATAGTTGAAATAAAT+TGG | + | chr1_3:3026263-3026282 | None:intergenic | 20.0% |
| !!! | AATTCATTCACTTTTCATTA+AGG | - | chr1_3:3026814-3026833 | Msa0097230:intron | 20.0% |
| !!! | ATTATTTTATTTTCCTCTTG+TGG | + | chr1_3:3026905-3026924 | None:intergenic | 20.0% |
| !!! | TTGAATAACATTAAGTTGGT+GGG | + | chr1_3:3022899-3022918 | None:intergenic | 25.0% |
| !!! | ATTGAATAACATTAAGTTGG+TGG | + | chr1_3:3022900-3022919 | None:intergenic | 25.0% |
| !! | AACAGAGATTTTCTCAATTA+GGG | - | chr1_3:3022942-3022961 | Msa0097230:intron | 25.0% |
| ! | TTGAATTCATGAAAATCTTG+AGG | - | chr1_3:3023278-3023297 | Msa0097230:intron | 25.0% |
| ! | TCACTAATGCTTGAAATTTA+TGG | - | chr1_3:3023349-3023368 | Msa0097230:intron | 25.0% |
| ! | TGTGTTTATTGTATTGTTGA+AGG | - | chr1_3:3023384-3023403 | Msa0097230:intron | 25.0% |
| ! | TTTATTGTATTGTTGAAGGA+TGG | - | chr1_3:3023388-3023407 | Msa0097230:intron | 25.0% |
| ! | AATCTCTTCTAAGTTCATTA+GGG | + | chr1_3:3023469-3023488 | None:intergenic | 25.0% |
| ! | AAATCTCTTCTAAGTTCATT+AGG | + | chr1_3:3023470-3023489 | None:intergenic | 25.0% |
| ! | AACTACATACATATTTAGCA+AGG | + | chr1_3:3023548-3023567 | None:intergenic | 25.0% |
| !! | TTTGTTTGAGATATTTGATG+AGG | - | chr1_3:3023566-3023585 | Msa0097230:intron | 25.0% |
| !!! | GATATGGTTTGATTGTTTTT+TGG | - | chr1_3:3023588-3023607 | Msa0097230:intron | 25.0% |
| ! | TTAAGTTATAACAGAGACTT+GGG | - | chr1_3:3023650-3023669 | Msa0097230:intron | 25.0% |
| ! | AATAAAAATTCAGTTGCATC+TGG | - | chr1_3:3023878-3023897 | Msa0097230:intron | 25.0% |
| ! | AATCAATTTCGAAATTGAAG+TGG | - | chr1_3:3024086-3024105 | Msa0097230:intron | 25.0% |
| ! | TTATAGAAAACTGAAAACAG+TGG | - | chr1_3:3024120-3024139 | Msa0097230:intron | 25.0% |
| ! | AAAACAACAAAAGCAGAATA+AGG | + | chr1_3:3024205-3024224 | Msa0097240:intron | 25.0% |
| ! | ATTGAAACAATTATTCGAAC+AGG | + | chr1_3:3024457-3024476 | Msa0097240:intron | 25.0% |
| !! | ACTTACTACTTTAGAAATTG+AGG | - | chr1_3:3024578-3024597 | Msa0097230:intron | 25.0% |
| !! | CTTACTACTTTAGAAATTGA+GGG | - | chr1_3:3024579-3024598 | Msa0097230:intron | 25.0% |
| ! | ACAAAAACTTAGAAAAAGCA+TGG | + | chr1_3:3024696-3024715 | Msa0097240:intron | 25.0% |
| !! | TATTCAAGTTCATAAAACCT+AGG | - | chr1_3:3024872-3024891 | Msa0097230:intron | 25.0% |
| ! | TATCACATAGGTTAAGAAAT+AGG | + | chr1_3:3024905-3024924 | Msa0097240:intron | 25.0% |
| ! | GAAAAATTGAGGAAATTCTA+TGG | + | chr1_3:3024943-3024962 | Msa0097240:intron | 25.0% |
| ! | CATACCAAATAACTAATAGA+AGG | - | chr1_3:3025458-3025477 | Msa0097230:intron | 25.0% |
| ! | ATTCCCTTCTATTAGTTATT+TGG | + | chr1_3:3025465-3025484 | Msa0097240:intron | 25.0% |
| ! | GTTGAAATTAAAGTCAACTA+AGG | + | chr1_3:3025679-3025698 | Msa0097240:intron | 25.0% |
| !!! | CTTGATCGATTTATTTTCAA+AGG | - | chr1_3:3025903-3025922 | Msa0097230:CDS | 25.0% |
| !! | AACTACTTTAAGAACTCAAA+TGG | + | chr1_3:3025985-3026004 | Msa0097240:CDS | 25.0% |
| ! | ATTATGATCTACTGAAAATG+AGG | - | chr1_3:3026052-3026071 | Msa0097230:CDS | 25.0% |
| !!! | TCCAATGTCAATTTTAACAT+TGG | - | chr1_3:3026081-3026100 | Msa0097230:CDS | 25.0% |
| !!! | CCAATGTCAATTTTAACATT+GGG | - | chr1_3:3026082-3026101 | Msa0097230:CDS | 25.0% |
| !!! | CTAAAATATTGATTTACTCC+TGG | - | chr1_3:3026125-3026144 | Msa0097230:CDS | 25.0% |
| ! | AGTCTAATCTAAGTATATCT+TGG | - | chr1_3:3026582-3026601 | Msa0097230:intron | 25.0% |
| ! | AAAGTCAAATGCATAATCAA+TGG | - | chr1_3:3026620-3026639 | Msa0097230:intron | 25.0% |
| ! | ATAATCAATGGCTCAATAAA+AGG | - | chr1_3:3026632-3026651 | Msa0097230:intron | 25.0% |
| ! | GGCAAACAAATGAAAATTAA+GGG | + | chr1_3:3026663-3026682 | None:intergenic | 25.0% |
| ! | TGGCAAACAAATGAAAATTA+AGG | + | chr1_3:3026664-3026683 | None:intergenic | 25.0% |
| ! | GTTAAATGATATAGCAAAAC+TGG | + | chr1_3:3026684-3026703 | None:intergenic | 25.0% |
| ! | AATAGTTAGATAAATTGGAG+TGG | - | chr1_3:3026842-3026861 | Msa0097230:intron | 25.0% |
| ! | CAACAGAGATTTTCTCAATT+AGG | - | chr1_3:3022941-3022960 | Msa0097230:intron | 30.0% |
| TTGACGCCATGAATTAAAAT+GGG | + | chr1_3:3023037-3023056 | None:intergenic | 30.0% | |
| TGAGATATTTGATGAGGATA+TGG | - | chr1_3:3023572-3023591 | Msa0097230:intron | 30.0% | |
| !!! | ATGGTTTGATTGTTTTTTGG+TGG | - | chr1_3:3023591-3023610 | Msa0097230:intron | 30.0% |
| !!! | TGGTTTGATTGTTTTTTGGT+GGG | - | chr1_3:3023592-3023611 | Msa0097230:intron | 30.0% |
| GTTAAGTTATAACAGAGACT+TGG | - | chr1_3:3023649-3023668 | Msa0097230:intron | 30.0% | |
| ! | AGATTTTATCACTGCTATTG+AGG | - | chr1_3:3023697-3023716 | Msa0097230:intron | 30.0% |
| CTAAGAAATCCTGATAAACT+TGG | + | chr1_3:3024058-3024077 | Msa0097240:intron | 30.0% | |
| ! | CAATTTCGAAATTGATTCCA+CGG | + | chr1_3:3024083-3024102 | Msa0097240:intron | 30.0% |
| ! | AGTTTTCTATAACCATTCCT+CGG | + | chr1_3:3024112-3024131 | Msa0097240:intron | 30.0% |
| GATCATCATAAAGAAACTGA+TGG | - | chr1_3:3024142-3024161 | Msa0097230:intron | 30.0% | |
| AATACCAAATGCAATACAGT+CGG | - | chr1_3:3024431-3024450 | Msa0097230:intron | 30.0% | |
| !! | AAACAAGACCTTTGAGATAA+CGG | + | chr1_3:3024633-3024652 | Msa0097240:intron | 30.0% |
| AACTTTGCAGTAATGTATTG+TGG | - | chr1_3:3024723-3024742 | Msa0097230:intron | 30.0% | |
| GTATTGTGGCTTATACTTAT+TGG | - | chr1_3:3024737-3024756 | Msa0097230:intron | 30.0% | |
| ACTTTCTATGGTTATCACAT+AGG | + | chr1_3:3024917-3024936 | Msa0097240:intron | 30.0% | |
| ATTCTATGGTACACTTTCTA+TGG | + | chr1_3:3024929-3024948 | Msa0097240:intron | 30.0% | |
| TAGCAAACAACGAAAAATTG+AGG | + | chr1_3:3024954-3024973 | Msa0097240:intron | 30.0% | |
| ! | CTTTGTTGTACTACATAGTA+AGG | - | chr1_3:3024994-3025013 | Msa0097230:intron | 30.0% |
| !! | TAGTAAGGTGAAGTTGATAA+AGG | - | chr1_3:3025009-3025028 | Msa0097230:intron | 30.0% |
| !! | AGTAAGGTGAAGTTGATAAA+GGG | - | chr1_3:3025010-3025029 | Msa0097230:intron | 30.0% |
| !! | TAAACTAACAGCTTTGGAAT+CGG | + | chr1_3:3025110-3025129 | Msa0097240:intron | 30.0% |
| TTATGCAAGATGAACACTAA+TGG | - | chr1_3:3025193-3025212 | Msa0097230:intron | 30.0% | |
| TATGCAAGATGAACACTAAT+GGG | - | chr1_3:3025194-3025213 | Msa0097230:intron | 30.0% | |
| TCTACCATCTAATCAACTTA+TGG | - | chr1_3:3025229-3025248 | Msa0097230:intron | 30.0% | |
| !! | TCTGACACCTTATCATTTTT+GGG | + | chr1_3:3025268-3025287 | Msa0097240:intron | 30.0% |
| ! | TTCTGACACCTTATCATTTT+TGG | + | chr1_3:3025269-3025288 | Msa0097240:intron | 30.0% |
| TAAAAGAGGGATAAAGAGAA+AGG | - | chr1_3:3025329-3025348 | Msa0097230:intron | 30.0% | |
| ATTATGTTATGTGCTCTTGT+AGG | + | chr1_3:3025433-3025452 | Msa0097240:intron | 30.0% | |
| ! | TCTCGTTACTCTTTTTGAAT+AGG | + | chr1_3:3025618-3025637 | Msa0097240:intron | 30.0% |
| CAAATATGTGTAGAAGAAAG+AGG | - | chr1_3:3025749-3025768 | Msa0097230:intron | 30.0% | |
| CTCCTATCACACTAATTTAT+CGG | - | chr1_3:3025839-3025858 | Msa0097230:CDS | 30.0% | |
| ! | TGTGATAAATTTTGCTGCAA+CGG | + | chr1_3:3026010-3026029 | Msa0097240:CDS | 30.0% |
| CCCAATGTTAAAATTGACAT+TGG | + | chr1_3:3026085-3026104 | Msa0097240:CDS | 30.0% | |
| ! | TTGTGATGATGTATCATGTA+TGG | + | chr1_3:3026159-3026178 | Msa0097240:CDS | 30.0% |
| !!! | GGTATTTTGACCATTATAGA+AGG | + | chr1_3:3026733-3026752 | None:intergenic | 30.0% |
| CTATAATGGTCAAAATACCA+TGG | - | chr1_3:3026734-3026753 | Msa0097230:intron | 30.0% | |
| TTAGATAAATTGGAGTGGTT+TGG | - | chr1_3:3026847-3026866 | Msa0097230:intron | 30.0% | |
| !!! | TTTTATTTTCCTCTTGTGGA+TGG | + | chr1_3:3026901-3026920 | None:intergenic | 30.0% |
| ! | ATTTACTGCTTCAGTTGTTT+TGG | - | chr1_3:3026956-3026975 | Msa0097230:exon | 30.0% |
| !!! | CTTTTGGGATTCATAAACAT+TGG | + | chr1_3:3027058-3027077 | None:intergenic | 30.0% |
| CAATGTTTATGAATCCCAAA+AGG | - | chr1_3:3027056-3027075 | Msa0097230:five_prime_UTR | 30.0% | |
| AAGCGGGTATAATAGGATTA+AGG | + | chr1_3:3022788-3022807 | None:intergenic | 35.0% | |
| !!! | TGTTGGTTTTGAGAATGAAG+CGG | + | chr1_3:3022805-3022824 | None:intergenic | 35.0% |
| !! | AAGAGTTCTGGTTAGTTTGT+TGG | + | chr1_3:3022822-3022841 | None:intergenic | 35.0% |
| !!! | AAGCGACCCATTTTAATTCA+TGG | - | chr1_3:3023028-3023047 | Msa0097230:intron | 35.0% |
| CTTGACGCCATGAATTAAAA+TGG | + | chr1_3:3023038-3023057 | None:intergenic | 35.0% | |
| TCTTCGGCAGCATTAAAAAA+TGG | + | chr1_3:3023083-3023102 | None:intergenic | 35.0% | |
| GAAGGATGGAATCTACATAT+AGG | - | chr1_3:3023402-3023421 | Msa0097230:intron | 35.0% | |
| TGGAATCTACATATAGGACA+TGG | - | chr1_3:3023408-3023427 | Msa0097230:intron | 35.0% | |
| AGAGATTTACTTACTACCCT+TGG | - | chr1_3:3023482-3023501 | Msa0097230:intron | 35.0% | |
| !!! | CTAGTGCTGATATTGGTTTT+TGG | - | chr1_3:3023954-3023973 | Msa0097230:intron | 35.0% |
| ! | GTTTTTCTCCTTTGCTTGAT+TGG | - | chr1_3:3024478-3024497 | Msa0097230:intron | 35.0% |
| !! | TTTTAATTACACGTCACACG+AGG | - | chr1_3:3024771-3024790 | Msa0097230:intron | 35.0% |
| AAGAAATAGGACACTAACCT+AGG | + | chr1_3:3024892-3024911 | Msa0097240:intron | 35.0% | |
| !! | GTAAGGTGAAGTTGATAAAG+GGG | - | chr1_3:3025011-3025030 | Msa0097230:intron | 35.0% |
| ACATGCTAAACTAACAGCTT+TGG | + | chr1_3:3025116-3025135 | Msa0097240:intron | 35.0% | |
| TTCTGCTCAGCTCTTATTAA+CGG | - | chr1_3:3025165-3025184 | Msa0097230:intron | 35.0% | |
| ATGCAAGATGAACACTAATG+GGG | - | chr1_3:3025195-3025214 | Msa0097230:intron | 35.0% | |
| !! | GTGTCCATAAGTTGATTAGA+TGG | + | chr1_3:3025236-3025255 | Msa0097240:intron | 35.0% |
| TAACTCGCCCAAAAATGATA+AGG | - | chr1_3:3025258-3025277 | Msa0097230:intron | 35.0% | |
| ACTCTTACACTGTTACACAT+TGG | - | chr1_3:3025717-3025736 | Msa0097230:intron | 35.0% | |
| TAAGAACTCATAAACCTGAG+AGG | + | chr1_3:3025819-3025838 | Msa0097240:intron | 35.0% | |
| CTCCGATAAATTAGTGTGAT+AGG | + | chr1_3:3025844-3025863 | Msa0097240:intron | 35.0% | |
| CTATCACACTAATTTATCGG+AGG | - | chr1_3:3025842-3025861 | Msa0097230:CDS | 35.0% | |
| GGTAGTTATGATGAAAGTAG+AGG | + | chr1_3:3026389-3026408 | None:intergenic | 35.0% | |
| CAGATGGAAAGATAATGTGA+AGG | + | chr1_3:3026495-3026514 | None:intergenic | 35.0% | |
| GTAAGTACATTAACACACTC+AGG | - | chr1_3:3026539-3026558 | Msa0097230:CDS | 35.0% | |
| ACAAAATAAGGTAACCGTGT+GGG | + | chr1_3:3026762-3026781 | None:intergenic | 35.0% | |
| AACAAAATAAGGTAACCGTG+TGG | + | chr1_3:3026763-3026782 | None:intergenic | 35.0% | |
| TCTTGTGGATGGATATTGTT+TGG | + | chr1_3:3026890-3026909 | None:intergenic | 35.0% | |
| AAACAATATCCATCCACAAG+AGG | - | chr1_3:3026889-3026908 | Msa0097230:CDS | 35.0% | |
| !!! | TGTTTTGGTTCTTCTTGTTG+TGG | - | chr1_3:3026971-3026990 | Msa0097230:five_prime_UTR | 35.0% |
| !!! | GTTTTGGTTCTTCTTGTTGT+GGG | - | chr1_3:3026972-3026991 | Msa0097230:five_prime_UTR | 35.0% |
| !!! | TTTTGGTTCTTCTTGTTGTG+GGG | - | chr1_3:3026973-3026992 | Msa0097230:five_prime_UTR | 35.0% |
| GAGAATGAAGCGGGTATAAT+AGG | + | chr1_3:3022795-3022814 | None:intergenic | 40.0% | |
| !!! | GTTGGTTTTGAGAATGAAGC+GGG | + | chr1_3:3022804-3022823 | None:intergenic | 40.0% |
| ACTAACCAGAACTCTTCTCT+CGG | - | chr1_3:3022826-3022845 | Msa0097230:CDS | 40.0% | |
| TGCAGATTCCTGAACTTCTT+CGG | + | chr1_3:3023099-3023118 | None:intergenic | 40.0% | |
| AAGTTCAGGAATCTGCAGAT+AGG | - | chr1_3:3023102-3023121 | Msa0097230:intron | 40.0% | |
| !!! | CATGCTGGAAGTATTTTTGG+TGG | + | chr1_3:3023441-3023460 | None:intergenic | 40.0% |
| !!! | CCACATGCTGGAAGTATTTT+TGG | + | chr1_3:3023444-3023463 | None:intergenic | 40.0% |
| CCAAAAATACTTCCAGCATG+TGG | - | chr1_3:3023441-3023460 | Msa0097230:intron | 40.0% | |
| AGGAATTTGAACGCGAAGTT+AGG | - | chr1_3:3023627-3023646 | Msa0097230:intron | 40.0% | |
| !! | TAGAAAGGCATCTCAGACAT+GGG | - | chr1_3:3023769-3023788 | Msa0097230:intron | 40.0% |
| !! | CGAGCTTGCTTTGTTTCTTT+CGG | - | chr1_3:3023817-3023836 | Msa0097230:intron | 40.0% |
| !! | GAGCTTGCTTTGTTTCTTTC+GGG | - | chr1_3:3023818-3023837 | Msa0097230:intron | 40.0% |
| ! | TTTGTTTCTTTCGGGAATGC+CGG | - | chr1_3:3023826-3023845 | Msa0097230:intron | 40.0% |
| AATTCAGTTGCATCTGGTGT+TGG | - | chr1_3:3023884-3023903 | Msa0097230:intron | 40.0% | |
| ATTCAGTTGCATCTGGTGTT+GGG | - | chr1_3:3023885-3023904 | Msa0097230:intron | 40.0% | |
| TGGTCCAAATCCAATGCATA+AGG | - | chr1_3:3024030-3024049 | Msa0097230:intron | 40.0% | |
| AAACTTGGCACCTTATGCAT+TGG | + | chr1_3:3024043-3024062 | Msa0097240:intron | 40.0% | |
| ! | CATAAGGTGCCAAGTTTATC+AGG | - | chr1_3:3024046-3024065 | Msa0097230:intron | 40.0% |
| ATCAGGATTTCTTAGTTCCG+TGG | - | chr1_3:3024063-3024082 | Msa0097230:intron | 40.0% | |
| ! | TGATGGTGCACTAATTCCAA+TGG | - | chr1_3:3024159-3024178 | Msa0097230:intron | 40.0% |
| TTCCAATGGCTGAATTGAAC+AGG | - | chr1_3:3024173-3024192 | Msa0097230:intron | 40.0% | |
| TCCAATGGCTGAATTGAACA+GGG | - | chr1_3:3024174-3024193 | Msa0097230:intron | 40.0% | |
| ATCGTTGAAACTTCGTTGTG+TGG | - | chr1_3:3024229-3024248 | Msa0097230:intron | 40.0% | |
| AGCATTCATCAGAACTATCG+AGG | + | chr1_3:3024354-3024373 | Msa0097240:intron | 40.0% | |
| TGCTATGACAAGCATCTCTA+TGG | - | chr1_3:3024370-3024389 | Msa0097230:intron | 40.0% | |
| ATGACAAGCATCTCTATGGA+TGG | - | chr1_3:3024374-3024393 | Msa0097230:intron | 40.0% | |
| CCTTTGCTTGATTGGTAAGT+CGG | - | chr1_3:3024486-3024505 | Msa0097230:intron | 40.0% | |
| GCAAGTAAATGCAAGTGTGT+CGG | + | chr1_3:3024534-3024553 | Msa0097240:intron | 40.0% | |
| GCGACACTGCTAATGTAATA+AGG | + | chr1_3:3024611-3024630 | Msa0097240:intron | 40.0% | |
| AGCATGGATGAATAGTGAGT+GGG | + | chr1_3:3024680-3024699 | Msa0097240:intron | 40.0% | |
| AAGCATGGATGAATAGTGAG+TGG | + | chr1_3:3024681-3024700 | Msa0097240:intron | 40.0% | |
| CAGAGAAGAGAAGACAGAAA+CGG | - | chr1_3:3025400-3025419 | Msa0097230:intron | 40.0% | |
| ! | CTTTTGAGCAACTTGAGAGA+CGG | + | chr1_3:3025796-3025815 | Msa0097240:intron | 40.0% |
| CCGATCTAAAAACAACGATC+GGG | + | chr1_3:3025874-3025893 | Msa0097240:intron | 40.0% | |
| !!! | CCCGATCGTTGTTTTTAGAT+CGG | - | chr1_3:3025871-3025890 | Msa0097230:CDS | 40.0% |
| CCCGATCTAAAAACAACGAT+CGG | + | chr1_3:3025875-3025894 | Msa0097240:intron | 40.0% | |
| !!! | CCGATCGTTGTTTTTAGATC+GGG | - | chr1_3:3025872-3025891 | Msa0097230:CDS | 40.0% |
| TCAAAGGCTTAGTAACTTCG+AGG | - | chr1_3:3025919-3025938 | Msa0097230:CDS | 40.0% | |
| CAAAGGCTTAGTAACTTCGA+GGG | - | chr1_3:3025920-3025939 | Msa0097230:CDS | 40.0% | |
| CACAATTCGCAGTAGTGATA+TGG | - | chr1_3:3026026-3026045 | Msa0097230:CDS | 40.0% | |
| !! | TGGGATGCTCTAAGATTTCA+AGG | - | chr1_3:3026101-3026120 | Msa0097230:CDS | 40.0% |
| AACATGGGTTCTTGGAACTT+AGG | + | chr1_3:3026336-3026355 | None:intergenic | 40.0% | |
| TGAACAGAACCAAGGAACAT+GGG | + | chr1_3:3026351-3026370 | None:intergenic | 40.0% | |
| ATGAACAGAACCAAGGAACA+TGG | + | chr1_3:3026352-3026371 | None:intergenic | 40.0% | |
| GGATAGTATGAACAGAACCA+AGG | + | chr1_3:3026359-3026378 | None:intergenic | 40.0% | |
| ! | TGTTAGCAACTGGTTAGTTG+TGG | + | chr1_3:3026410-3026429 | None:intergenic | 40.0% |
| AGCTTGAAGATGTTAGCAAC+TGG | + | chr1_3:3026420-3026439 | None:intergenic | 40.0% | |
| GCTAACATCTTCAAGCTTAG+TGG | - | chr1_3:3026423-3026442 | Msa0097230:intron | 40.0% | |
| AAAATACCATGGTTCCCACA+CGG | - | chr1_3:3026745-3026764 | Msa0097230:intron | 40.0% | |
| GTGGATGGATATTGTTTGGA+TGG | + | chr1_3:3026886-3026905 | None:intergenic | 40.0% | |
| !! | CTTGTTGTGGGGATTTTGAA+TGG | - | chr1_3:3026984-3027003 | Msa0097230:five_prime_UTR | 40.0% |
| TTTGAATGGCTATAGTGCTG+AGG | - | chr1_3:3026998-3027017 | Msa0097230:five_prime_UTR | 40.0% | |
| ! | TTGAATGGCTATAGTGCTGA+GGG | - | chr1_3:3026999-3027018 | Msa0097230:five_prime_UTR | 40.0% |
| !! | AGATCCTTATTAGGTTGAGG+AGG | + | chr1_3:3027177-3027196 | None:intergenic | 40.0% |
| ! | TGGAGATCCTTATTAGGTTG+AGG | + | chr1_3:3027180-3027199 | None:intergenic | 40.0% |
| !! | GTGGATTGGAGATCCTTATT+AGG | + | chr1_3:3027186-3027205 | None:intergenic | 40.0% |
| !! | ATTACCACTTTTAGCTGTGG+TGG | + | chr1_3:3027205-3027224 | None:intergenic | 40.0% |
| CACGGAAGGATTTCAATGTT+GGG | + | chr1_3:3027228-3027247 | None:intergenic | 40.0% | |
| TCACGGAAGGATTTCAATGT+TGG | + | chr1_3:3027229-3027248 | None:intergenic | 40.0% | |
| TAGATCCGAGAGAAGAGTTC+TGG | + | chr1_3:3022834-3022853 | None:intergenic | 45.0% | |
| TCATGGCGTCAAGTCTTGAT+CGG | - | chr1_3:3023045-3023064 | Msa0097230:intron | 45.0% | |
| TAATGCTGCCGAAGAAGTTC+AGG | - | chr1_3:3023088-3023107 | Msa0097230:intron | 45.0% | |
| TTCATTAGGGTTCCACATGC+TGG | + | chr1_3:3023456-3023475 | None:intergenic | 45.0% | |
| TTGGTGGGATATGCAGTTAG+AGG | - | chr1_3:3023607-3023626 | Msa0097230:intron | 45.0% | |
| TTAGATGAAACGAACCCTCC+AGG | - | chr1_3:3023746-3023765 | Msa0097230:intron | 45.0% | |
| !! | GTAGAAAGGCATCTCAGACA+TGG | - | chr1_3:3023768-3023787 | Msa0097230:intron | 45.0% |
| ! | ATCTCAGACATGGGTGGTTT+TGG | - | chr1_3:3023778-3023797 | Msa0097230:intron | 45.0% |
| ! | TTCAGTTGCATCTGGTGTTG+GGG | - | chr1_3:3023886-3023905 | Msa0097230:intron | 45.0% |
| ! | ATCTGGTGTTGGGGAAGAAA+AGG | - | chr1_3:3023895-3023914 | Msa0097230:intron | 45.0% |
| !! | AAAAGGAGGAGGTATCACGT+GGG | - | chr1_3:3023912-3023931 | Msa0097230:intron | 45.0% |
| GGCACCTTATGCATTGGATT+TGG | + | chr1_3:3024037-3024056 | Msa0097240:intron | 45.0% | |
| TTTCGAAATTGAAGTGGCCG+AGG | - | chr1_3:3024092-3024111 | Msa0097230:intron | 45.0% | |
| AAATTGAAGTGGCCGAGGAA+TGG | - | chr1_3:3024097-3024116 | Msa0097230:intron | 45.0% | |
| ACCCTGTTCAATTCAGCCAT+TGG | + | chr1_3:3024178-3024197 | Msa0097240:intron | 45.0% | |
| AAGCATCTCTATGGATGGTG+TGG | - | chr1_3:3024379-3024398 | Msa0097230:intron | 45.0% | |
| CCGACTTACCAATCAAGCAA+AGG | + | chr1_3:3024489-3024508 | Msa0097240:intron | 45.0% | |
| !! | TTGTAGCTTGCTGCAGCATT+AGG | - | chr1_3:3024834-3024853 | Msa0097230:intron | 45.0% |
| AAGTTGCTCAAAAGCCTCTC+AGG | - | chr1_3:3025802-3025821 | Msa0097230:intron | 45.0% | |
| GAGGGCGGAAAATATGAAGT+GGG | - | chr1_3:3025938-3025957 | Msa0097230:CDS | 45.0% | |
| TCATGTATGGACTCTGAACC+AGG | + | chr1_3:3026146-3026165 | Msa0097240:CDS | 45.0% | |
| TTCCAAGAACCCATGTTCCT+TGG | - | chr1_3:3026339-3026358 | Msa0097230:CDS | 45.0% | |
| AACCAAGGAACATGGGTTCT+TGG | + | chr1_3:3026344-3026363 | None:intergenic | 45.0% | |
| GATGAAAGTAGAGGTCATGC+TGG | + | chr1_3:3026380-3026399 | None:intergenic | 45.0% | |
| GAAGGATAAGAGTGACGTGT+GGG | + | chr1_3:3026477-3026496 | None:intergenic | 45.0% | |
| TGAAGGATAAGAGTGACGTG+TGG | + | chr1_3:3026478-3026497 | None:intergenic | 45.0% | |
| ! | TTTTGCCACAACGAACAACC+TGG | + | chr1_3:3027102-3027121 | None:intergenic | 45.0% |
| CTGTCCTCCTCAACCTAATA+AGG | - | chr1_3:3027170-3027189 | Msa0097230:five_prime_UTR | 45.0% | |
| !!! | CACTTTTAGCTGTGGTGGAT+TGG | + | chr1_3:3027200-3027219 | None:intergenic | 45.0% |
| CAATCCACCACAGCTAAAAG+TGG | - | chr1_3:3027198-3027217 | Msa0097230:five_prime_UTR | 45.0% | |
| !! | GGGATTACCACTTTTAGCTG+TGG | + | chr1_3:3027208-3027227 | None:intergenic | 45.0% |
| !!! | TTTTATTTTTTATTGAAAAA+AGG | - | chr1_3:3024294-3024313 | Msa0097230:intron | 5.0% |
| !!! | TTTATTTTTTATTGAAAAAA+GGG | - | chr1_3:3024295-3024314 | Msa0097230:intron | 5.0% |
| !!! | AAAATATTTTTAACAAAATA+AGG | + | chr1_3:3026774-3026793 | None:intergenic | 5.0% |
| CTACCCTTGGCACTGCTAAA+TGG | - | chr1_3:3023495-3023514 | Msa0097230:intron | 50.0% | |
| ! | CTGCCATTTAGCAGTGCCAA+GGG | + | chr1_3:3023501-3023520 | None:intergenic | 50.0% |
| TGGGCGATGATGCAAGAACT+AGG | - | chr1_3:3023669-3023688 | Msa0097230:intron | 50.0% | |
| AACGAACCCTCCAGGTAGAA+AGG | - | chr1_3:3023754-3023773 | Msa0097230:intron | 50.0% | |
| GAGATGCCTTTCTACCTGGA+GGG | + | chr1_3:3023763-3023782 | Msa0097240:intron | 50.0% | |
| TGAGATGCCTTTCTACCTGG+AGG | + | chr1_3:3023764-3023783 | Msa0097240:intron | 50.0% | |
| ! | GTCTGAGATGCCTTTCTACC+TGG | + | chr1_3:3023767-3023786 | Msa0097240:intron | 50.0% |
| !! | AAAGGCATCTCAGACATGGG+TGG | - | chr1_3:3023772-3023791 | Msa0097230:intron | 50.0% |
| !!! | ACATGGGTGGTTTTGGACGA+AGG | - | chr1_3:3023785-3023804 | Msa0097230:intron | 50.0% |
| ! | TGGTGTTGGGGAAGAAAAGG+AGG | - | chr1_3:3023898-3023917 | Msa0097230:intron | 50.0% |
| TGTTGGGGAAGAAAAGGAGG+AGG | - | chr1_3:3023901-3023920 | Msa0097230:intron | 50.0% | |
| !! | GAAAAGGAGGAGGTATCACG+TGG | - | chr1_3:3023911-3023930 | Msa0097230:intron | 50.0% |
| !! | GCTAGCGCTAGTGCTGATAT+TGG | - | chr1_3:3023947-3023966 | Msa0097230:intron | 50.0% |
| ATTTGGACCAGAAGAACCGC+TGG | + | chr1_3:3024020-3024039 | Msa0097240:intron | 50.0% | |
| CAGGCCGACTGTATTGCATT+TGG | + | chr1_3:3024438-3024457 | Msa0097240:intron | 50.0% | |
| CAGTGTCGCCGTTATCTCAA+AGG | - | chr1_3:3024622-3024641 | Msa0097230:intron | 50.0% | |
| TACACGTCACACGAGGTAGA+AGG | - | chr1_3:3024778-3024797 | Msa0097230:intron | 50.0% | |
| AGGCTTAGTAACTTCGAGGG+CGG | - | chr1_3:3025923-3025942 | Msa0097230:CDS | 50.0% | |
| CGAGGGCGGAAAATATGAAG+TGG | - | chr1_3:3025937-3025956 | Msa0097230:CDS | 50.0% | |
| CACAACGAACAACCTGGCAT+CGG | + | chr1_3:3027096-3027115 | None:intergenic | 50.0% | |
| TTTCCTGACGATTGTCCTCC+AGG | - | chr1_3:3027135-3027154 | Msa0097230:five_prime_UTR | 50.0% | |
| TGGCGTCAAGTCTTGATCGG+TGG | - | chr1_3:3023048-3023067 | Msa0097230:intron | 55.0% | |
| GGCGTCAAGTCTTGATCGGT+GGG | - | chr1_3:3023049-3023068 | Msa0097230:intron | 55.0% | |
| ! | CCTGCCATTTAGCAGTGCCA+AGG | + | chr1_3:3023502-3023521 | None:intergenic | 55.0% |
| CCTTGGCACTGCTAAATGGC+AGG | - | chr1_3:3023499-3023518 | Msa0097230:intron | 55.0% | |
| !! | GGGTTGTTGCTTTCAGCTGC+CGG | + | chr1_3:3023848-3023867 | Msa0097240:intron | 55.0% |
| ! | AGGTATCACGTGGGCATCGT+AGG | - | chr1_3:3023921-3023940 | Msa0097230:intron | 55.0% |
| ! | GGTATCACGTGGGCATCGTA+GGG | - | chr1_3:3023922-3023941 | Msa0097230:intron | 55.0% |
| CTGGAGGAACTAGACTGCTG+CGG | + | chr1_3:3024001-3024020 | Msa0097240:intron | 55.0% | |
| ! | CAGCAGTCTAGTTCCTCCAG+CGG | - | chr1_3:3024001-3024020 | Msa0097230:intron | 55.0% |
| AGTTCCTCCAGCGGTTCTTC+TGG | - | chr1_3:3024010-3024029 | Msa0097230:intron | 55.0% | |
| AGGTAACCGTGTGGGAACCA+TGG | + | chr1_3:3026754-3026773 | None:intergenic | 55.0% | |
| ! | AACGAACAACCTGGCATCGG+CGG | + | chr1_3:3027093-3027112 | None:intergenic | 55.0% |
| CGATGCCAGGTTGTTCGTTG+TGG | - | chr1_3:3027094-3027113 | Msa0097230:five_prime_UTR | 55.0% | |
| TAGCCTGGAGGACAATCGTC+AGG | + | chr1_3:3027141-3027160 | None:intergenic | 55.0% | |
| ! | GTTGAGGAGGACAGTGCTGA+TGG | + | chr1_3:3027164-3027183 | None:intergenic | 55.0% |
| TGGACCAGAAGAACCGCTGG+AGG | + | chr1_3:3024017-3024036 | Msa0097240:intron | 60.0% | |
| ! | GGCTATAGTGCTGAGGGTGC+AGG | - | chr1_3:3027005-3027024 | Msa0097230:five_prime_UTR | 60.0% |
| ! | AGTGCTGAGGGTGCAGGAAG+AGG | - | chr1_3:3027011-3027030 | Msa0097230:five_prime_UTR | 60.0% |
| ! | CGGCGGCGAGAACACCTTTT+GGG | + | chr1_3:3027073-3027092 | None:intergenic | 60.0% |
| !! | CAGTGCTGATGGTAGCCTGG+AGG | + | chr1_3:3027153-3027172 | None:intergenic | 60.0% |
| !! | GGACAGTGCTGATGGTAGCC+TGG | + | chr1_3:3027156-3027175 | None:intergenic | 60.0% |
| ! | GCGGCGGCGAGAACACCTTT+TGG | + | chr1_3:3027074-3027093 | None:intergenic | 65.0% |
| !! | GAACAACCTGGCATCGGCGG+CGG | + | chr1_3:3027090-3027109 | None:intergenic | 65.0% |
| TTCTCGCCGCCGCCGATGCC+AGG | - | chr1_3:3027081-3027100 | Msa0097230:five_prime_UTR | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 3022756 | 3027248 | 3022756 | ID=Msa0097230;Name=Msa0097230 |
| chr1_3 | mRNA | 3022756 | 3027248 | 3022756 | ID=Msa0097230-mRNA-1;Parent=Msa0097230;Name=Msa0097230-mRNA-1;_AED=0.28;_eAED=0.28;_QI=291|0.6|0.66|1|1|1|6|0|367 |
| chr1_3 | exon | 3022756 | 3022847 | 3022756 | ID=Msa0097230-mRNA-1:exon:879;Parent=Msa0097230-mRNA-1 |
| chr1_3 | exon | 3022972 | 3023034 | 3022972 | ID=Msa0097230-mRNA-1:exon:878;Parent=Msa0097230-mRNA-1 |
| chr1_3 | exon | 3025505 | 3025688 | 3025505 | ID=Msa0097230-mRNA-1:exon:877;Parent=Msa0097230-mRNA-1 |
| chr1_3 | exon | 3025809 | 3026381 | 3025809 | ID=Msa0097230-mRNA-1:exon:876;Parent=Msa0097230-mRNA-1 |
| chr1_3 | exon | 3026484 | 3026598 | 3026484 | ID=Msa0097230-mRNA-1:exon:875;Parent=Msa0097230-mRNA-1 |
| chr1_3 | exon | 3026881 | 3027248 | 3026881 | ID=Msa0097230-mRNA-1:exon:874;Parent=Msa0097230-mRNA-1 |
| chr1_3 | five_prime_UTR | 3026958 | 3027248 | 3026958 | ID=Msa0097230-mRNA-1:five_prime_utr;Parent=Msa0097230-mRNA-1 |
| chr1_3 | CDS | 3026881 | 3026957 | 3026881 | ID=Msa0097230-mRNA-1:cds;Parent=Msa0097230-mRNA-1 |
| chr1_3 | CDS | 3026484 | 3026598 | 3026484 | ID=Msa0097230-mRNA-1:cds;Parent=Msa0097230-mRNA-1 |
| chr1_3 | CDS | 3025809 | 3026381 | 3025809 | ID=Msa0097230-mRNA-1:cds;Parent=Msa0097230-mRNA-1 |
| chr1_3 | CDS | 3025505 | 3025688 | 3025505 | ID=Msa0097230-mRNA-1:cds;Parent=Msa0097230-mRNA-1 |
| chr1_3 | CDS | 3022972 | 3023034 | 3022972 | ID=Msa0097230-mRNA-1:cds;Parent=Msa0097230-mRNA-1 |
| chr1_3 | CDS | 3022756 | 3022847 | 3022756 | ID=Msa0097230-mRNA-1:cds;Parent=Msa0097230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
