Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0054020 | XP_013465848.1 | 87.436 | 390 | 31 | 3 | 1 | 373 | 1 | 389 | 0.0 | 679 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0054020 | sp|Q3S4A7|AHK5_ARATH | 60.101 | 396 | 128 | 6 | 2 | 373 | 42 | 431 | 4.74e-143 | 431 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0054020 | A0A072VD15 | 87.436 | 390 | 31 | 3 | 1 | 373 | 1 | 389 | 0.0 | 679 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0054020 | Msa0096590 | 0.832287 | 1.030546e-55 | -8.615850e-47 |
Msa0054020 | Msa0148700 | 0.801084 | 1.063964e-48 | -8.615850e-47 |
Msa0054020 | Msa1431160 | 0.858068 | 1.061830e-62 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0054020 | MtrunA17_Chr1g0150531 | 87.436 | 390 | 31 | 3 | 1 | 373 | 1 | 389 | 0.0 | 679 |
Msa0054020 | MtrunA17_Chr1g0150511 | 79.449 | 399 | 55 | 4 | 2 | 373 | 43 | 441 | 0.0 | 611 |
Msa0054020 | MtrunA17_Chr3g0136601 | 73.116 | 398 | 80 | 5 | 2 | 373 | 39 | 435 | 0.0 | 563 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0054020 | AT5G10720.1 | 60.101 | 396 | 128 | 6 | 2 | 373 | 42 | 431 | 4.82e-144 | 431 |
Msa0054020 | AT5G10680.2 | 45.455 | 132 | 54 | 4 | 1 | 122 | 37 | 160 | 1.58e-22 | 95.5 |
Msa0054020 | AT5G10680.1 | 45.455 | 132 | 54 | 4 | 1 | 122 | 37 | 160 | 1.58e-22 | 95.5 |
Find 52 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTTGAAAATCAGCTATAAT+TGG | 0.203037 | 1_2:-8566193 | None:intergenic |
AATAAAACTATTTACATTAC+AGG | 0.248651 | 1_2:+8567790 | Msa0054020:CDS |
CATGATATCTTCAGGAGATT+TGG | 0.274046 | 1_2:+8568037 | Msa0054020:CDS |
AGAAAGGAATACCTGCAAAA+AGG | 0.324513 | 1_2:+8567226 | Msa0054020:CDS |
AAAACATCCGGATTCAATAT+TGG | 0.341750 | 1_2:+8566423 | Msa0054020:CDS |
GAAACATCGGTCACGAGATA+TGG | 0.358103 | 1_2:+8566531 | Msa0054020:CDS |
AGTATGATGATGTTGTTTAC+TGG | 0.359184 | 1_2:+8566509 | Msa0054020:CDS |
TATTGGATGGTGTTGCAATA+AGG | 0.369745 | 1_2:+8566440 | Msa0054020:CDS |
CTGCTTATACTCCCAATGTT+TGG | 0.389829 | 1_2:-8566272 | None:intergenic |
AAGAGAGAAGTAATGGAGAA+AGG | 0.411442 | 1_2:+8567210 | Msa0054020:CDS |
CTTCCTCCCTTTGTTTGCTA+AGG | 0.415873 | 1_2:-8566333 | None:intergenic |
AGAAGAAGTAACAATCTTAG+AGG | 0.423575 | 1_2:+8566168 | Msa0054020:CDS |
TTTATTAAGTTCCGTTTCCT+TGG | 0.423794 | 1_2:-8567773 | None:intergenic |
AACGATTGGAGGGAAGTATT+CGG | 0.430328 | 1_2:+8566557 | Msa0054020:CDS |
ATAAATTTCCAGGACCTCAT+AGG | 0.439968 | 1_2:+8567132 | Msa0054020:intron |
GAGATACTTAAAGACAATAA+TGG | 0.444436 | 1_2:+8566373 | Msa0054020:CDS |
TTGGATGCCATGATATCTTC+AGG | 0.452888 | 1_2:+8568029 | Msa0054020:CDS |
AGCTAATCTCACCAAACATT+GGG | 0.459533 | 1_2:+8566261 | Msa0054020:CDS |
TAGAGAACAAAGGCAGCTCT+TGG | 0.468770 | 1_2:+8568010 | Msa0054020:CDS |
GATCCTTCCAAGGCTGAGTC+GGG | 0.469731 | 1_2:+8568086 | Msa0054020:CDS |
CAAATCTCCTGAAGATATCA+TGG | 0.470277 | 1_2:-8568036 | None:intergenic |
AGCAAGGCAGGAGAAACAAT+TGG | 0.472538 | 1_2:+8567315 | Msa0054020:CDS |
TTTCTAACCCGACTCAGCCT+TGG | 0.478360 | 1_2:-8568093 | None:intergenic |
GAACCTGTGTTTAGCAAGGC+AGG | 0.487467 | 1_2:+8567303 | Msa0054020:CDS |
TGATCCTTCCAAGGCTGAGT+CGG | 0.495766 | 1_2:+8568085 | Msa0054020:CDS |
ACACCATCCAATATTGAATC+CGG | 0.501464 | 1_2:-8566430 | None:intergenic |
AAACAAAAGAATTGAAATTG+AGG | 0.507015 | 1_2:+8566483 | Msa0054020:CDS |
TGTCGAGCTCTTCTCGAAGA+AGG | 0.524157 | 1_2:-8566309 | None:intergenic |
AATGAGAGCAAAACAAGTGC+TGG | 0.527084 | 1_2:+8567908 | Msa0054020:CDS |
ACTTTCTGATGTTGTTAGCA+TGG | 0.533367 | 1_2:+8567959 | Msa0054020:CDS |
CGACAACCTTAGCAAACAAA+GGG | 0.535427 | 1_2:+8566327 | Msa0054020:CDS |
TAGCTAATCTCACCAAACAT+TGG | 0.536290 | 1_2:+8566260 | Msa0054020:CDS |
TAAAGACAATAATGGATTCG+AGG | 0.541318 | 1_2:+8566381 | Msa0054020:CDS |
TCTCCTGCCTTGCTAAACAC+AGG | 0.549002 | 1_2:-8567306 | None:intergenic |
CATCCGGATTCAATATTGGA+TGG | 0.554723 | 1_2:+8566427 | Msa0054020:CDS |
TGATATACTTGATCCTTCCA+AGG | 0.562404 | 1_2:+8568076 | Msa0054020:CDS |
ATCTGTGACAGTTCTTCCAC+AGG | 0.563140 | 1_2:-8566643 | None:intergenic |
AGTTCAGAAAGCCAAGGAAA+CGG | 0.563751 | 1_2:+8567762 | Msa0054020:CDS |
CAAACATTGGGAGTATAAGC+AGG | 0.575100 | 1_2:+8566273 | Msa0054020:CDS |
ATGCTAACAACATCAGAAAG+TGG | 0.579722 | 1_2:-8567957 | None:intergenic |
TAACCCGACTCAGCCTTGGA+AGG | 0.583784 | 1_2:-8568089 | None:intergenic |
TCGACAACCTTAGCAAACAA+AGG | 0.586507 | 1_2:+8566326 | Msa0054020:CDS |
TGCAGAACCTGTGTTTAGCA+AGG | 0.605158 | 1_2:+8567299 | Msa0054020:CDS |
TTTCACGGGATCAGGTGCGA+AGG | 0.618292 | 1_2:+8567173 | Msa0054020:CDS |
ATGTTGTTTACTGGAAACAT+CGG | 0.642416 | 1_2:+8566518 | Msa0054020:CDS |
CAACCTTAGCAAACAAAGGG+AGG | 0.643459 | 1_2:+8566330 | Msa0054020:CDS |
TGAAAGACAATCATCACCTG+TGG | 0.646063 | 1_2:+8566627 | Msa0054020:CDS |
AATTGCAGTTCAGAAAGCCA+AGG | 0.648370 | 1_2:+8567756 | Msa0054020:CDS |
GTAAACAACATCATCATACT+CGG | 0.655371 | 1_2:-8566506 | None:intergenic |
GGATTCGAGGAAGAAAGCTA+CGG | 0.661034 | 1_2:+8566394 | Msa0054020:CDS |
TTCGAGGAAGAAAGCTACGG+TGG | 0.662476 | 1_2:+8566397 | Msa0054020:CDS |
CAAAACTTGATAGAGAACAA+AGG | 0.676780 | 1_2:+8568000 | Msa0054020:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTGTAAATTTGTTTATAAGT+GGG | - | chr1_2:8567478-8567497 | None:intergenic | 15.0% |
!! | AATAAAACTATTTACATTAC+AGG | + | chr1_2:8567790-8567809 | Msa0054020:CDS | 15.0% |
!! | GAAATTCATAAATCAAAATT+TGG | - | chr1_2:8567830-8567849 | None:intergenic | 15.0% |
!!! | TTGTAAATTTGTTTATAAGT+GGG | - | chr1_2:8567478-8567497 | None:intergenic | 15.0% |
!! | AATAAAACTATTTACATTAC+AGG | + | chr1_2:8567790-8567809 | Msa0054020:CDS | 15.0% |
!! | GAAATTCATAAATCAAAATT+TGG | - | chr1_2:8567830-8567849 | None:intergenic | 15.0% |
!! | AAACAAAAGAATTGAAATTG+AGG | + | chr1_2:8566483-8566502 | Msa0054020:CDS | 20.0% |
!!! | TGTAAATTTGTTTATAAGTG+GGG | - | chr1_2:8567477-8567496 | None:intergenic | 20.0% |
!!! | CTTGTAAATTTGTTTATAAG+TGG | - | chr1_2:8567479-8567498 | None:intergenic | 20.0% |
!! | AAACAAAAGAATTGAAATTG+AGG | + | chr1_2:8566483-8566502 | Msa0054020:CDS | 20.0% |
!!! | TGTAAATTTGTTTATAAGTG+GGG | - | chr1_2:8567477-8567496 | None:intergenic | 20.0% |
!!! | CTTGTAAATTTGTTTATAAG+TGG | - | chr1_2:8567479-8567498 | None:intergenic | 20.0% |
!! | CTTTGAAAATCAGCTATAAT+TGG | - | chr1_2:8566196-8566215 | None:intergenic | 25.0% |
! | GAGATACTTAAAGACAATAA+TGG | + | chr1_2:8566373-8566392 | Msa0054020:CDS | 25.0% |
!!! | AGATTTTAAGAGAGAAGTAA+TGG | + | chr1_2:8567203-8567222 | Msa0054020:CDS | 25.0% |
!! | GTAAATTTGTTTATAAGTGG+GGG | - | chr1_2:8567476-8567495 | None:intergenic | 25.0% |
! | ATAGGATATGTGTTTATAAG+TGG | + | chr1_2:8567613-8567632 | Msa0054020:intron | 25.0% |
! | TAGGATATGTGTTTATAAGT+GGG | + | chr1_2:8567614-8567633 | Msa0054020:intron | 25.0% |
!!! | GATTGAAAGGTATTAGAATT+TGG | - | chr1_2:8567651-8567670 | None:intergenic | 25.0% |
!! | CTTTGAAAATCAGCTATAAT+TGG | - | chr1_2:8566196-8566215 | None:intergenic | 25.0% |
! | GAGATACTTAAAGACAATAA+TGG | + | chr1_2:8566373-8566392 | Msa0054020:CDS | 25.0% |
!!! | AGATTTTAAGAGAGAAGTAA+TGG | + | chr1_2:8567203-8567222 | Msa0054020:CDS | 25.0% |
!! | GTAAATTTGTTTATAAGTGG+GGG | - | chr1_2:8567476-8567495 | None:intergenic | 25.0% |
! | ATAGGATATGTGTTTATAAG+TGG | + | chr1_2:8567613-8567632 | Msa0054020:intron | 25.0% |
! | TAGGATATGTGTTTATAAGT+GGG | + | chr1_2:8567614-8567633 | Msa0054020:intron | 25.0% |
!!! | GATTGAAAGGTATTAGAATT+TGG | - | chr1_2:8567651-8567670 | None:intergenic | 25.0% |
AGAAGAAGTAACAATCTTAG+AGG | + | chr1_2:8566168-8566187 | Msa0054020:CDS | 30.0% | |
!! | AGCTGATTTTCAAAGAATTG+TGG | + | chr1_2:8566201-8566220 | Msa0054020:CDS | 30.0% |
!! | TAAAGACAATAATGGATTCG+AGG | + | chr1_2:8566381-8566400 | Msa0054020:CDS | 30.0% |
AAAACATCCGGATTCAATAT+TGG | + | chr1_2:8566423-8566442 | Msa0054020:CDS | 30.0% | |
GTAAACAACATCATCATACT+CGG | - | chr1_2:8566509-8566528 | None:intergenic | 30.0% | |
! | AGTATGATGATGTTGTTTAC+TGG | + | chr1_2:8566509-8566528 | Msa0054020:CDS | 30.0% |
! | ATGTTGTTTACTGGAAACAT+CGG | + | chr1_2:8566518-8566537 | Msa0054020:CDS | 30.0% |
! | CCTCTTTTAAACTTGGAAAA+TGG | - | chr1_2:8566959-8566978 | None:intergenic | 30.0% |
! | CCATTTTCCAAGTTTAAAAG+AGG | + | chr1_2:8566956-8566975 | Msa0054020:CDS | 30.0% |
! | TTTTCCAAGTTTAAAAGAGG+AGG | + | chr1_2:8566959-8566978 | Msa0054020:CDS | 30.0% |
! | ATTACCTCCTCTTTTAAACT+TGG | - | chr1_2:8566966-8566985 | None:intergenic | 30.0% |
TTACTTGCACATAAATTTCC+AGG | + | chr1_2:8567122-8567141 | Msa0054020:intron | 30.0% | |
! | AACGGATGTTGAAATTTTCA+CGG | + | chr1_2:8567158-8567177 | Msa0054020:CDS | 30.0% |
!! | AAAGTTATTTCCCTTTTTGC+AGG | - | chr1_2:8567240-8567259 | None:intergenic | 30.0% |
AACAATTGGAGTAAACCATA+TGG | + | chr1_2:8567329-8567348 | Msa0054020:intron | 30.0% | |
ACAATTGGAGTAAACCATAT+GGG | + | chr1_2:8567330-8567349 | Msa0054020:intron | 30.0% | |
! | AGTAACAGTTTTTACCTGAT+CGG | - | chr1_2:8567367-8567386 | None:intergenic | 30.0% |
! | TCAGGTAAAAACTGTTACTT+TGG | + | chr1_2:8567368-8567387 | Msa0054020:intron | 30.0% |
! | ATTGTCTTCAAATTTGGGTT+AGG | + | chr1_2:8567408-8567427 | Msa0054020:intron | 30.0% |
! | ATTTGTTAGTAGTCTCACAT+TGG | + | chr1_2:8567590-8567609 | Msa0054020:intron | 30.0% |
AGGATATGTGTTTATAAGTG+GGG | + | chr1_2:8567615-8567634 | Msa0054020:intron | 30.0% | |
TGCACAAAAACAAGATTGAA+AGG | - | chr1_2:8567664-8567683 | None:intergenic | 30.0% | |
TAATTTCGACAAACAATTGC+AGG | + | chr1_2:8567696-8567715 | Msa0054020:intron | 30.0% | |
GGTGAGAAAAAGAGAAAAAA+TGG | + | chr1_2:8567717-8567736 | Msa0054020:intron | 30.0% | |
AGAAAAAATGGCAAAGCTAA+GGG | + | chr1_2:8567729-8567748 | Msa0054020:CDS | 30.0% | |
TTTATTAAGTTCCGTTTCCT+TGG | - | chr1_2:8567776-8567795 | None:intergenic | 30.0% | |
CAAAACTTGATAGAGAACAA+AGG | + | chr1_2:8568000-8568019 | Msa0054020:CDS | 30.0% | |
AGAAGAAGTAACAATCTTAG+AGG | + | chr1_2:8566168-8566187 | Msa0054020:CDS | 30.0% | |
!! | AGCTGATTTTCAAAGAATTG+TGG | + | chr1_2:8566201-8566220 | Msa0054020:CDS | 30.0% |
!! | TAAAGACAATAATGGATTCG+AGG | + | chr1_2:8566381-8566400 | Msa0054020:CDS | 30.0% |
AAAACATCCGGATTCAATAT+TGG | + | chr1_2:8566423-8566442 | Msa0054020:CDS | 30.0% | |
GTAAACAACATCATCATACT+CGG | - | chr1_2:8566509-8566528 | None:intergenic | 30.0% | |
! | AGTATGATGATGTTGTTTAC+TGG | + | chr1_2:8566509-8566528 | Msa0054020:CDS | 30.0% |
! | ATGTTGTTTACTGGAAACAT+CGG | + | chr1_2:8566518-8566537 | Msa0054020:CDS | 30.0% |
! | CCTCTTTTAAACTTGGAAAA+TGG | - | chr1_2:8566959-8566978 | None:intergenic | 30.0% |
! | CCATTTTCCAAGTTTAAAAG+AGG | + | chr1_2:8566956-8566975 | Msa0054020:CDS | 30.0% |
! | TTTTCCAAGTTTAAAAGAGG+AGG | + | chr1_2:8566959-8566978 | Msa0054020:CDS | 30.0% |
! | ATTACCTCCTCTTTTAAACT+TGG | - | chr1_2:8566966-8566985 | None:intergenic | 30.0% |
TTACTTGCACATAAATTTCC+AGG | + | chr1_2:8567122-8567141 | Msa0054020:intron | 30.0% | |
! | AACGGATGTTGAAATTTTCA+CGG | + | chr1_2:8567158-8567177 | Msa0054020:CDS | 30.0% |
!! | AAAGTTATTTCCCTTTTTGC+AGG | - | chr1_2:8567240-8567259 | None:intergenic | 30.0% |
AACAATTGGAGTAAACCATA+TGG | + | chr1_2:8567329-8567348 | Msa0054020:intron | 30.0% | |
ACAATTGGAGTAAACCATAT+GGG | + | chr1_2:8567330-8567349 | Msa0054020:intron | 30.0% | |
! | AGTAACAGTTTTTACCTGAT+CGG | - | chr1_2:8567367-8567386 | None:intergenic | 30.0% |
! | TCAGGTAAAAACTGTTACTT+TGG | + | chr1_2:8567368-8567387 | Msa0054020:intron | 30.0% |
! | ATTGTCTTCAAATTTGGGTT+AGG | + | chr1_2:8567408-8567427 | Msa0054020:intron | 30.0% |
! | ATTTGTTAGTAGTCTCACAT+TGG | + | chr1_2:8567590-8567609 | Msa0054020:intron | 30.0% |
AGGATATGTGTTTATAAGTG+GGG | + | chr1_2:8567615-8567634 | Msa0054020:intron | 30.0% | |
TGCACAAAAACAAGATTGAA+AGG | - | chr1_2:8567664-8567683 | None:intergenic | 30.0% | |
TAATTTCGACAAACAATTGC+AGG | + | chr1_2:8567696-8567715 | Msa0054020:intron | 30.0% | |
GGTGAGAAAAAGAGAAAAAA+TGG | + | chr1_2:8567717-8567736 | Msa0054020:intron | 30.0% | |
AGAAAAAATGGCAAAGCTAA+GGG | + | chr1_2:8567729-8567748 | Msa0054020:CDS | 30.0% | |
TTTATTAAGTTCCGTTTCCT+TGG | - | chr1_2:8567776-8567795 | None:intergenic | 30.0% | |
CAAAACTTGATAGAGAACAA+AGG | + | chr1_2:8568000-8568019 | Msa0054020:CDS | 30.0% | |
TAGCTAATCTCACCAAACAT+TGG | + | chr1_2:8566260-8566279 | Msa0054020:CDS | 35.0% | |
AGCTAATCTCACCAAACATT+GGG | + | chr1_2:8566261-8566280 | Msa0054020:CDS | 35.0% | |
ACACCATCCAATATTGAATC+CGG | - | chr1_2:8566433-8566452 | None:intergenic | 35.0% | |
!! | TATTGGATGGTGTTGCAATA+AGG | + | chr1_2:8566440-8566459 | Msa0054020:CDS | 35.0% |
ACGAGATATGGAAAAACGAT+TGG | + | chr1_2:8566543-8566562 | Msa0054020:CDS | 35.0% | |
AGATATGGAAAAACGATTGG+AGG | + | chr1_2:8566546-8566565 | Msa0054020:CDS | 35.0% | |
GATATGGAAAAACGATTGGA+GGG | + | chr1_2:8566547-8566566 | Msa0054020:CDS | 35.0% | |
CAAAATGCACCTGTTGTTAT+AGG | + | chr1_2:8566703-8566722 | Msa0054020:intron | 35.0% | |
ATAAATTTCCAGGACCTCAT+AGG | + | chr1_2:8567132-8567151 | Msa0054020:intron | 35.0% | |
! | ACGGATGTTGAAATTTTCAC+GGG | + | chr1_2:8567159-8567178 | Msa0054020:CDS | 35.0% |
! | AAGAGAGAAGTAATGGAGAA+AGG | + | chr1_2:8567210-8567229 | Msa0054020:CDS | 35.0% |
AGAAAGGAATACCTGCAAAA+AGG | + | chr1_2:8567226-8567245 | Msa0054020:CDS | 35.0% | |
GAAAGGAATACCTGCAAAAA+GGG | + | chr1_2:8567227-8567246 | Msa0054020:CDS | 35.0% | |
!!! | ACTTTTGAGACAGAACTGTT+TGG | + | chr1_2:8567255-8567274 | Msa0054020:CDS | 35.0% |
ACCTGCATTGTCTTCAAATT+TGG | + | chr1_2:8567402-8567421 | Msa0054020:intron | 35.0% | |
CCTGCATTGTCTTCAAATTT+GGG | + | chr1_2:8567403-8567422 | Msa0054020:intron | 35.0% | |
!!! | CCTTACAAGTTGGTTTTGTA+AGG | - | chr1_2:8567444-8567463 | None:intergenic | 35.0% |
CCTTACAAAACCAACTTGTA+AGG | + | chr1_2:8567441-8567460 | Msa0054020:intron | 35.0% | |
TTAGTAGTCTCACATTGGAT+AGG | + | chr1_2:8567595-8567614 | Msa0054020:intron | 35.0% | |
GGATATGTGTTTATAAGTGG+GGG | + | chr1_2:8567616-8567635 | Msa0054020:intron | 35.0% | |
GAGAAAAAATGGCAAAGCTA+AGG | + | chr1_2:8567728-8567747 | Msa0054020:CDS | 35.0% | |
ATTGTCTCCTCTATTACAAG+GGG | - | chr1_2:8567891-8567910 | None:intergenic | 35.0% | |
CATTGTCTCCTCTATTACAA+GGG | - | chr1_2:8567892-8567911 | None:intergenic | 35.0% | |
TCATTGTCTCCTCTATTACA+AGG | - | chr1_2:8567893-8567912 | None:intergenic | 35.0% | |
ATGCTAACAACATCAGAAAG+TGG | - | chr1_2:8567960-8567979 | None:intergenic | 35.0% | |
ACTTTCTGATGTTGTTAGCA+TGG | + | chr1_2:8567959-8567978 | Msa0054020:CDS | 35.0% | |
CAAATCTCCTGAAGATATCA+TGG | - | chr1_2:8568039-8568058 | None:intergenic | 35.0% | |
CATGATATCTTCAGGAGATT+TGG | + | chr1_2:8568037-8568056 | Msa0054020:CDS | 35.0% | |
TGATATACTTGATCCTTCCA+AGG | + | chr1_2:8568076-8568095 | Msa0054020:CDS | 35.0% | |
TAGCTAATCTCACCAAACAT+TGG | + | chr1_2:8566260-8566279 | Msa0054020:CDS | 35.0% | |
AGCTAATCTCACCAAACATT+GGG | + | chr1_2:8566261-8566280 | Msa0054020:CDS | 35.0% | |
ACACCATCCAATATTGAATC+CGG | - | chr1_2:8566433-8566452 | None:intergenic | 35.0% | |
!! | TATTGGATGGTGTTGCAATA+AGG | + | chr1_2:8566440-8566459 | Msa0054020:CDS | 35.0% |
ACGAGATATGGAAAAACGAT+TGG | + | chr1_2:8566543-8566562 | Msa0054020:CDS | 35.0% | |
AGATATGGAAAAACGATTGG+AGG | + | chr1_2:8566546-8566565 | Msa0054020:CDS | 35.0% | |
GATATGGAAAAACGATTGGA+GGG | + | chr1_2:8566547-8566566 | Msa0054020:CDS | 35.0% | |
CAAAATGCACCTGTTGTTAT+AGG | + | chr1_2:8566703-8566722 | Msa0054020:intron | 35.0% | |
ATAAATTTCCAGGACCTCAT+AGG | + | chr1_2:8567132-8567151 | Msa0054020:intron | 35.0% | |
! | ACGGATGTTGAAATTTTCAC+GGG | + | chr1_2:8567159-8567178 | Msa0054020:CDS | 35.0% |
! | AAGAGAGAAGTAATGGAGAA+AGG | + | chr1_2:8567210-8567229 | Msa0054020:CDS | 35.0% |
AGAAAGGAATACCTGCAAAA+AGG | + | chr1_2:8567226-8567245 | Msa0054020:CDS | 35.0% | |
GAAAGGAATACCTGCAAAAA+GGG | + | chr1_2:8567227-8567246 | Msa0054020:CDS | 35.0% | |
!!! | ACTTTTGAGACAGAACTGTT+TGG | + | chr1_2:8567255-8567274 | Msa0054020:CDS | 35.0% |
ACCTGCATTGTCTTCAAATT+TGG | + | chr1_2:8567402-8567421 | Msa0054020:intron | 35.0% | |
CCTGCATTGTCTTCAAATTT+GGG | + | chr1_2:8567403-8567422 | Msa0054020:intron | 35.0% | |
!!! | CCTTACAAGTTGGTTTTGTA+AGG | - | chr1_2:8567444-8567463 | None:intergenic | 35.0% |
CCTTACAAAACCAACTTGTA+AGG | + | chr1_2:8567441-8567460 | Msa0054020:intron | 35.0% | |
TTAGTAGTCTCACATTGGAT+AGG | + | chr1_2:8567595-8567614 | Msa0054020:intron | 35.0% | |
GGATATGTGTTTATAAGTGG+GGG | + | chr1_2:8567616-8567635 | Msa0054020:intron | 35.0% | |
GAGAAAAAATGGCAAAGCTA+AGG | + | chr1_2:8567728-8567747 | Msa0054020:CDS | 35.0% | |
ATTGTCTCCTCTATTACAAG+GGG | - | chr1_2:8567891-8567910 | None:intergenic | 35.0% | |
CATTGTCTCCTCTATTACAA+GGG | - | chr1_2:8567892-8567911 | None:intergenic | 35.0% | |
TCATTGTCTCCTCTATTACA+AGG | - | chr1_2:8567893-8567912 | None:intergenic | 35.0% | |
ATGCTAACAACATCAGAAAG+TGG | - | chr1_2:8567960-8567979 | None:intergenic | 35.0% | |
ACTTTCTGATGTTGTTAGCA+TGG | + | chr1_2:8567959-8567978 | Msa0054020:CDS | 35.0% | |
CAAATCTCCTGAAGATATCA+TGG | - | chr1_2:8568039-8568058 | None:intergenic | 35.0% | |
CATGATATCTTCAGGAGATT+TGG | + | chr1_2:8568037-8568056 | Msa0054020:CDS | 35.0% | |
TGATATACTTGATCCTTCCA+AGG | + | chr1_2:8568076-8568095 | Msa0054020:CDS | 35.0% | |
CTGCTTATACTCCCAATGTT+TGG | - | chr1_2:8566275-8566294 | None:intergenic | 40.0% | |
! | CAAACATTGGGAGTATAAGC+AGG | + | chr1_2:8566273-8566292 | Msa0054020:CDS | 40.0% |
TCGACAACCTTAGCAAACAA+AGG | + | chr1_2:8566326-8566345 | Msa0054020:CDS | 40.0% | |
CGACAACCTTAGCAAACAAA+GGG | + | chr1_2:8566327-8566346 | Msa0054020:CDS | 40.0% | |
CATCCGGATTCAATATTGGA+TGG | + | chr1_2:8566427-8566446 | Msa0054020:CDS | 40.0% | |
!! | AACGATTGGAGGGAAGTATT+CGG | + | chr1_2:8566557-8566576 | Msa0054020:CDS | 40.0% |
TGAAAGACAATCATCACCTG+TGG | + | chr1_2:8566627-8566646 | Msa0054020:CDS | 40.0% | |
ACCTGTTGTTATAGGCCATT+AGG | + | chr1_2:8566711-8566730 | Msa0054020:intron | 40.0% | |
ACCTAATGGCCTATAACAAC+AGG | - | chr1_2:8566715-8566734 | None:intergenic | 40.0% | |
ACTCGTTGTAGTGTACCTAA+TGG | - | chr1_2:8566729-8566748 | None:intergenic | 40.0% | |
! | TGCCATTTCAATGAATTCCC+AGG | + | chr1_2:8566902-8566921 | Msa0054020:intron | 40.0% |
GTCCTGGGAATTCATTGAAA+TGG | - | chr1_2:8566907-8566926 | None:intergenic | 40.0% | |
GAGGAGGTAATGATTCTTGT+TGG | + | chr1_2:8566975-8566994 | Msa0054020:intron | 40.0% | |
GAGGTAATGATTCTTGTTGG+AGG | + | chr1_2:8566978-8566997 | Msa0054020:intron | 40.0% | |
!! | CAACATCCGTTTTTCCTATG+AGG | - | chr1_2:8567149-8567168 | None:intergenic | 40.0% |
! | GTTGAAATTTTCACGGGATC+AGG | + | chr1_2:8567165-8567184 | Msa0054020:CDS | 40.0% |
TGGAGTAAACCATATGGGAA+TGG | + | chr1_2:8567335-8567354 | Msa0054020:intron | 40.0% | |
! | CGGTTATTTCCATTCCCATA+TGG | - | chr1_2:8567347-8567366 | None:intergenic | 40.0% |
CCCAAATTTGAAGACAATGC+AGG | - | chr1_2:8567406-8567425 | None:intergenic | 40.0% | |
!!! | TGGTTTTGTAAGGATGAGTC+AGG | - | chr1_2:8567434-8567453 | None:intergenic | 40.0% |
AAGCCATATCTCATCCAATG+TGG | + | chr1_2:8567496-8567515 | Msa0054020:intron | 40.0% | |
TGACCTTAGTTGCCTGATAT+CGG | - | chr1_2:8567537-8567556 | None:intergenic | 40.0% | |
AATTGCAGTTCAGAAAGCCA+AGG | + | chr1_2:8567756-8567775 | Msa0054020:CDS | 40.0% | |
AGTTCAGAAAGCCAAGGAAA+CGG | + | chr1_2:8567762-8567781 | Msa0054020:CDS | 40.0% | |
TTCTTGACCCCTTGTAATAG+AGG | + | chr1_2:8567881-8567900 | Msa0054020:intron | 40.0% | |
AATGAGAGCAAAACAAGTGC+TGG | + | chr1_2:8567908-8567927 | Msa0054020:CDS | 40.0% | |
TTGGATGCCATGATATCTTC+AGG | + | chr1_2:8568029-8568048 | Msa0054020:CDS | 40.0% | |
CTGCTTATACTCCCAATGTT+TGG | - | chr1_2:8566275-8566294 | None:intergenic | 40.0% | |
! | CAAACATTGGGAGTATAAGC+AGG | + | chr1_2:8566273-8566292 | Msa0054020:CDS | 40.0% |
TCGACAACCTTAGCAAACAA+AGG | + | chr1_2:8566326-8566345 | Msa0054020:CDS | 40.0% | |
CGACAACCTTAGCAAACAAA+GGG | + | chr1_2:8566327-8566346 | Msa0054020:CDS | 40.0% | |
CATCCGGATTCAATATTGGA+TGG | + | chr1_2:8566427-8566446 | Msa0054020:CDS | 40.0% | |
!! | AACGATTGGAGGGAAGTATT+CGG | + | chr1_2:8566557-8566576 | Msa0054020:CDS | 40.0% |
TGAAAGACAATCATCACCTG+TGG | + | chr1_2:8566627-8566646 | Msa0054020:CDS | 40.0% | |
ACCTGTTGTTATAGGCCATT+AGG | + | chr1_2:8566711-8566730 | Msa0054020:intron | 40.0% | |
ACCTAATGGCCTATAACAAC+AGG | - | chr1_2:8566715-8566734 | None:intergenic | 40.0% | |
ACTCGTTGTAGTGTACCTAA+TGG | - | chr1_2:8566729-8566748 | None:intergenic | 40.0% | |
! | TGCCATTTCAATGAATTCCC+AGG | + | chr1_2:8566902-8566921 | Msa0054020:intron | 40.0% |
GTCCTGGGAATTCATTGAAA+TGG | - | chr1_2:8566907-8566926 | None:intergenic | 40.0% | |
GAGGAGGTAATGATTCTTGT+TGG | + | chr1_2:8566975-8566994 | Msa0054020:intron | 40.0% | |
GAGGTAATGATTCTTGTTGG+AGG | + | chr1_2:8566978-8566997 | Msa0054020:intron | 40.0% | |
!! | CAACATCCGTTTTTCCTATG+AGG | - | chr1_2:8567149-8567168 | None:intergenic | 40.0% |
! | GTTGAAATTTTCACGGGATC+AGG | + | chr1_2:8567165-8567184 | Msa0054020:CDS | 40.0% |
TGGAGTAAACCATATGGGAA+TGG | + | chr1_2:8567335-8567354 | Msa0054020:intron | 40.0% | |
! | CGGTTATTTCCATTCCCATA+TGG | - | chr1_2:8567347-8567366 | None:intergenic | 40.0% |
CCCAAATTTGAAGACAATGC+AGG | - | chr1_2:8567406-8567425 | None:intergenic | 40.0% | |
!!! | TGGTTTTGTAAGGATGAGTC+AGG | - | chr1_2:8567434-8567453 | None:intergenic | 40.0% |
AAGCCATATCTCATCCAATG+TGG | + | chr1_2:8567496-8567515 | Msa0054020:intron | 40.0% | |
TGACCTTAGTTGCCTGATAT+CGG | - | chr1_2:8567537-8567556 | None:intergenic | 40.0% | |
AATTGCAGTTCAGAAAGCCA+AGG | + | chr1_2:8567756-8567775 | Msa0054020:CDS | 40.0% | |
AGTTCAGAAAGCCAAGGAAA+CGG | + | chr1_2:8567762-8567781 | Msa0054020:CDS | 40.0% | |
TTCTTGACCCCTTGTAATAG+AGG | + | chr1_2:8567881-8567900 | Msa0054020:intron | 40.0% | |
AATGAGAGCAAAACAAGTGC+TGG | + | chr1_2:8567908-8567927 | Msa0054020:CDS | 40.0% | |
TTGGATGCCATGATATCTTC+AGG | + | chr1_2:8568029-8568048 | Msa0054020:CDS | 40.0% | |
CAACCTTAGCAAACAAAGGG+AGG | + | chr1_2:8566330-8566349 | Msa0054020:CDS | 45.0% | |
! | CTTCCTCCCTTTGTTTGCTA+AGG | - | chr1_2:8566336-8566355 | None:intergenic | 45.0% |
GGATTCGAGGAAGAAAGCTA+CGG | + | chr1_2:8566394-8566413 | Msa0054020:CDS | 45.0% | |
CTACGGTGGAGAAAAACATC+CGG | + | chr1_2:8566411-8566430 | Msa0054020:CDS | 45.0% | |
GAAACATCGGTCACGAGATA+TGG | + | chr1_2:8566531-8566550 | Msa0054020:CDS | 45.0% | |
ATCTGTGACAGTTCTTCCAC+AGG | - | chr1_2:8566646-8566665 | None:intergenic | 45.0% | |
ATAGCGCAACTCTTTGTCCT+GGG | - | chr1_2:8566922-8566941 | None:intergenic | 45.0% | |
!! | TTGTTGGAGGTCTTGTTGCA+AGG | + | chr1_2:8566991-8567010 | Msa0054020:intron | 45.0% |
CCAGGACCTCATAGGAAAAA+CGG | + | chr1_2:8567140-8567159 | Msa0054020:intron | 45.0% | |
TGCAGAACCTGTGTTTAGCA+AGG | + | chr1_2:8567299-8567318 | Msa0054020:CDS | 45.0% | |
AGCAAGGCAGGAGAAACAAT+TGG | + | chr1_2:8567315-8567334 | Msa0054020:CDS | 45.0% | |
GGGAATGGAAATAACCGATC+AGG | + | chr1_2:8567350-8567369 | Msa0054020:intron | 45.0% | |
GCAACTCAGACCTTACAAGT+TGG | - | chr1_2:8567454-8567473 | None:intergenic | 45.0% | |
AGGCCACATTGGATGAGATA+TGG | - | chr1_2:8567502-8567521 | None:intergenic | 45.0% | |
TCACACTTCATAGGCCACAT+TGG | - | chr1_2:8567513-8567532 | None:intergenic | 45.0% | |
GATATCGGGTCACACTTCAT+AGG | - | chr1_2:8567522-8567541 | None:intergenic | 45.0% | |
ATGAAGTGTGACCCGATATC+AGG | + | chr1_2:8567522-8567541 | Msa0054020:intron | 45.0% | |
GACCTTAGTTGCCTGATATC+GGG | - | chr1_2:8567536-8567555 | None:intergenic | 45.0% | |
TAGAGAACAAAGGCAGCTCT+TGG | + | chr1_2:8568010-8568029 | Msa0054020:CDS | 45.0% | |
CAACCTTAGCAAACAAAGGG+AGG | + | chr1_2:8566330-8566349 | Msa0054020:CDS | 45.0% | |
! | CTTCCTCCCTTTGTTTGCTA+AGG | - | chr1_2:8566336-8566355 | None:intergenic | 45.0% |
GGATTCGAGGAAGAAAGCTA+CGG | + | chr1_2:8566394-8566413 | Msa0054020:CDS | 45.0% | |
CTACGGTGGAGAAAAACATC+CGG | + | chr1_2:8566411-8566430 | Msa0054020:CDS | 45.0% | |
GAAACATCGGTCACGAGATA+TGG | + | chr1_2:8566531-8566550 | Msa0054020:CDS | 45.0% | |
ATCTGTGACAGTTCTTCCAC+AGG | - | chr1_2:8566646-8566665 | None:intergenic | 45.0% | |
ATAGCGCAACTCTTTGTCCT+GGG | - | chr1_2:8566922-8566941 | None:intergenic | 45.0% | |
!! | TTGTTGGAGGTCTTGTTGCA+AGG | + | chr1_2:8566991-8567010 | Msa0054020:intron | 45.0% |
CCAGGACCTCATAGGAAAAA+CGG | + | chr1_2:8567140-8567159 | Msa0054020:intron | 45.0% | |
TGCAGAACCTGTGTTTAGCA+AGG | + | chr1_2:8567299-8567318 | Msa0054020:CDS | 45.0% | |
AGCAAGGCAGGAGAAACAAT+TGG | + | chr1_2:8567315-8567334 | Msa0054020:CDS | 45.0% | |
GGGAATGGAAATAACCGATC+AGG | + | chr1_2:8567350-8567369 | Msa0054020:intron | 45.0% | |
GCAACTCAGACCTTACAAGT+TGG | - | chr1_2:8567454-8567473 | None:intergenic | 45.0% | |
AGGCCACATTGGATGAGATA+TGG | - | chr1_2:8567502-8567521 | None:intergenic | 45.0% | |
TCACACTTCATAGGCCACAT+TGG | - | chr1_2:8567513-8567532 | None:intergenic | 45.0% | |
GATATCGGGTCACACTTCAT+AGG | - | chr1_2:8567522-8567541 | None:intergenic | 45.0% | |
ATGAAGTGTGACCCGATATC+AGG | + | chr1_2:8567522-8567541 | Msa0054020:intron | 45.0% | |
GACCTTAGTTGCCTGATATC+GGG | - | chr1_2:8567536-8567555 | None:intergenic | 45.0% | |
TAGAGAACAAAGGCAGCTCT+TGG | + | chr1_2:8568010-8568029 | Msa0054020:CDS | 45.0% | |
TGTCGAGCTCTTCTCGAAGA+AGG | - | chr1_2:8566312-8566331 | None:intergenic | 50.0% | |
TTCGAGGAAGAAAGCTACGG+TGG | + | chr1_2:8566397-8566416 | Msa0054020:CDS | 50.0% | |
GATAGCGCAACTCTTTGTCC+TGG | - | chr1_2:8566923-8566942 | None:intergenic | 50.0% | |
!! | CCGTTTTTCCTATGAGGTCC+TGG | - | chr1_2:8567143-8567162 | None:intergenic | 50.0% |
GAACCTGTGTTTAGCAAGGC+AGG | + | chr1_2:8567303-8567322 | Msa0054020:CDS | 50.0% | |
TCTCCTGCCTTGCTAAACAC+AGG | - | chr1_2:8567309-8567328 | None:intergenic | 50.0% | |
GACCCGATATCAGGCAACTA+AGG | + | chr1_2:8567531-8567550 | Msa0054020:intron | 50.0% | |
ACGCTTCAGATGTCTAGTCC+TGG | + | chr1_2:8567556-8567575 | Msa0054020:intron | 50.0% | |
CGCTTCAGATGTCTAGTCCT+GGG | + | chr1_2:8567557-8567576 | Msa0054020:intron | 50.0% | |
ATGTCTAGTCCTGGGCGTAA+GGG | + | chr1_2:8567565-8567584 | Msa0054020:intron | 50.0% | |
TGATCCTTCCAAGGCTGAGT+CGG | + | chr1_2:8568085-8568104 | Msa0054020:CDS | 50.0% | |
TGTCGAGCTCTTCTCGAAGA+AGG | - | chr1_2:8566312-8566331 | None:intergenic | 50.0% | |
TTCGAGGAAGAAAGCTACGG+TGG | + | chr1_2:8566397-8566416 | Msa0054020:CDS | 50.0% | |
GATAGCGCAACTCTTTGTCC+TGG | - | chr1_2:8566923-8566942 | None:intergenic | 50.0% | |
!! | CCGTTTTTCCTATGAGGTCC+TGG | - | chr1_2:8567143-8567162 | None:intergenic | 50.0% |
GAACCTGTGTTTAGCAAGGC+AGG | + | chr1_2:8567303-8567322 | Msa0054020:CDS | 50.0% | |
TCTCCTGCCTTGCTAAACAC+AGG | - | chr1_2:8567309-8567328 | None:intergenic | 50.0% | |
GACCCGATATCAGGCAACTA+AGG | + | chr1_2:8567531-8567550 | Msa0054020:intron | 50.0% | |
ACGCTTCAGATGTCTAGTCC+TGG | + | chr1_2:8567556-8567575 | Msa0054020:intron | 50.0% | |
CGCTTCAGATGTCTAGTCCT+GGG | + | chr1_2:8567557-8567576 | Msa0054020:intron | 50.0% | |
ATGTCTAGTCCTGGGCGTAA+GGG | + | chr1_2:8567565-8567584 | Msa0054020:intron | 50.0% | |
TGATCCTTCCAAGGCTGAGT+CGG | + | chr1_2:8568085-8568104 | Msa0054020:CDS | 50.0% | |
TTTCACGGGATCAGGTGCGA+AGG | + | chr1_2:8567173-8567192 | Msa0054020:CDS | 55.0% | |
GATGTCTAGTCCTGGGCGTA+AGG | + | chr1_2:8567564-8567583 | Msa0054020:intron | 55.0% | |
AACAAATCGCCCTTACGCCC+AGG | - | chr1_2:8567577-8567596 | None:intergenic | 55.0% | |
GATCCTTCCAAGGCTGAGTC+GGG | + | chr1_2:8568086-8568105 | Msa0054020:CDS | 55.0% | |
TAACCCGACTCAGCCTTGGA+AGG | - | chr1_2:8568092-8568111 | None:intergenic | 55.0% | |
TTTCACGGGATCAGGTGCGA+AGG | + | chr1_2:8567173-8567192 | Msa0054020:CDS | 55.0% | |
GATGTCTAGTCCTGGGCGTA+AGG | + | chr1_2:8567564-8567583 | Msa0054020:intron | 55.0% | |
AACAAATCGCCCTTACGCCC+AGG | - | chr1_2:8567577-8567596 | None:intergenic | 55.0% | |
GATCCTTCCAAGGCTGAGTC+GGG | + | chr1_2:8568086-8568105 | Msa0054020:CDS | 55.0% | |
TAACCCGACTCAGCCTTGGA+AGG | - | chr1_2:8568092-8568111 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_2 | gene | 8566151 | 8568112 | 8566151 | ID=Msa0054020;Name=Msa0054020 |
chr1_2 | mRNA | 8566151 | 8568112 | 8566151 | ID=Msa0054020-mRNA-1;Parent=Msa0054020;Name=Msa0054020-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|5|0|373 |
chr1_2 | exon | 8566151 | 8566714 | 8566151 | ID=Msa0054020-mRNA-1:exon:3047;Parent=Msa0054020-mRNA-1 |
chr1_2 | exon | 8566924 | 8566980 | 8566924 | ID=Msa0054020-mRNA-1:exon:3048;Parent=Msa0054020-mRNA-1 |
chr1_2 | exon | 8567144 | 8567338 | 8567144 | ID=Msa0054020-mRNA-1:exon:3049;Parent=Msa0054020-mRNA-1 |
chr1_2 | exon | 8567718 | 8567811 | 8567718 | ID=Msa0054020-mRNA-1:exon:3050;Parent=Msa0054020-mRNA-1 |
chr1_2 | exon | 8567901 | 8568112 | 8567901 | ID=Msa0054020-mRNA-1:exon:3051;Parent=Msa0054020-mRNA-1 |
chr1_2 | CDS | 8566151 | 8566714 | 8566151 | ID=Msa0054020-mRNA-1:cds;Parent=Msa0054020-mRNA-1 |
chr1_2 | CDS | 8566924 | 8566980 | 8566924 | ID=Msa0054020-mRNA-1:cds;Parent=Msa0054020-mRNA-1 |
chr1_2 | CDS | 8567144 | 8567338 | 8567144 | ID=Msa0054020-mRNA-1:cds;Parent=Msa0054020-mRNA-1 |
chr1_2 | CDS | 8567718 | 8567811 | 8567718 | ID=Msa0054020-mRNA-1:cds;Parent=Msa0054020-mRNA-1 |
chr1_2 | CDS | 8567901 | 8568112 | 8567901 | ID=Msa0054020-mRNA-1:cds;Parent=Msa0054020-mRNA-1 |
Gene Sequence |
Protein sequence |