AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0054020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0054020 MtrunA17_Chr1g0150531 87.436 390 31 3 1 373 1 389 0.0 679
Msa0054020 MtrunA17_Chr1g0150511 79.449 399 55 4 2 373 43 441 0.0 611
Msa0054020 MtrunA17_Chr3g0136601 73.116 398 80 5 2 373 39 435 0.0 563
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0054020 AT5G10720.1 60.101 396 128 6 2 373 42 431 4.82e-144 431
Msa0054020 AT5G10680.2 45.455 132 54 4 1 122 37 160 1.58e-22 95.5
Msa0054020 AT5G10680.1 45.455 132 54 4 1 122 37 160 1.58e-22 95.5

Find 52 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGAAAATCAGCTATAAT+TGG 0.203037 1_2:-8566193 None:intergenic
AATAAAACTATTTACATTAC+AGG 0.248651 1_2:+8567790 Msa0054020:CDS
CATGATATCTTCAGGAGATT+TGG 0.274046 1_2:+8568037 Msa0054020:CDS
AGAAAGGAATACCTGCAAAA+AGG 0.324513 1_2:+8567226 Msa0054020:CDS
AAAACATCCGGATTCAATAT+TGG 0.341750 1_2:+8566423 Msa0054020:CDS
GAAACATCGGTCACGAGATA+TGG 0.358103 1_2:+8566531 Msa0054020:CDS
AGTATGATGATGTTGTTTAC+TGG 0.359184 1_2:+8566509 Msa0054020:CDS
TATTGGATGGTGTTGCAATA+AGG 0.369745 1_2:+8566440 Msa0054020:CDS
CTGCTTATACTCCCAATGTT+TGG 0.389829 1_2:-8566272 None:intergenic
AAGAGAGAAGTAATGGAGAA+AGG 0.411442 1_2:+8567210 Msa0054020:CDS
CTTCCTCCCTTTGTTTGCTA+AGG 0.415873 1_2:-8566333 None:intergenic
AGAAGAAGTAACAATCTTAG+AGG 0.423575 1_2:+8566168 Msa0054020:CDS
TTTATTAAGTTCCGTTTCCT+TGG 0.423794 1_2:-8567773 None:intergenic
AACGATTGGAGGGAAGTATT+CGG 0.430328 1_2:+8566557 Msa0054020:CDS
ATAAATTTCCAGGACCTCAT+AGG 0.439968 1_2:+8567132 Msa0054020:intron
GAGATACTTAAAGACAATAA+TGG 0.444436 1_2:+8566373 Msa0054020:CDS
TTGGATGCCATGATATCTTC+AGG 0.452888 1_2:+8568029 Msa0054020:CDS
AGCTAATCTCACCAAACATT+GGG 0.459533 1_2:+8566261 Msa0054020:CDS
TAGAGAACAAAGGCAGCTCT+TGG 0.468770 1_2:+8568010 Msa0054020:CDS
GATCCTTCCAAGGCTGAGTC+GGG 0.469731 1_2:+8568086 Msa0054020:CDS
CAAATCTCCTGAAGATATCA+TGG 0.470277 1_2:-8568036 None:intergenic
AGCAAGGCAGGAGAAACAAT+TGG 0.472538 1_2:+8567315 Msa0054020:CDS
TTTCTAACCCGACTCAGCCT+TGG 0.478360 1_2:-8568093 None:intergenic
GAACCTGTGTTTAGCAAGGC+AGG 0.487467 1_2:+8567303 Msa0054020:CDS
TGATCCTTCCAAGGCTGAGT+CGG 0.495766 1_2:+8568085 Msa0054020:CDS
ACACCATCCAATATTGAATC+CGG 0.501464 1_2:-8566430 None:intergenic
AAACAAAAGAATTGAAATTG+AGG 0.507015 1_2:+8566483 Msa0054020:CDS
TGTCGAGCTCTTCTCGAAGA+AGG 0.524157 1_2:-8566309 None:intergenic
AATGAGAGCAAAACAAGTGC+TGG 0.527084 1_2:+8567908 Msa0054020:CDS
ACTTTCTGATGTTGTTAGCA+TGG 0.533367 1_2:+8567959 Msa0054020:CDS
CGACAACCTTAGCAAACAAA+GGG 0.535427 1_2:+8566327 Msa0054020:CDS
TAGCTAATCTCACCAAACAT+TGG 0.536290 1_2:+8566260 Msa0054020:CDS
TAAAGACAATAATGGATTCG+AGG 0.541318 1_2:+8566381 Msa0054020:CDS
TCTCCTGCCTTGCTAAACAC+AGG 0.549002 1_2:-8567306 None:intergenic
CATCCGGATTCAATATTGGA+TGG 0.554723 1_2:+8566427 Msa0054020:CDS
TGATATACTTGATCCTTCCA+AGG 0.562404 1_2:+8568076 Msa0054020:CDS
ATCTGTGACAGTTCTTCCAC+AGG 0.563140 1_2:-8566643 None:intergenic
AGTTCAGAAAGCCAAGGAAA+CGG 0.563751 1_2:+8567762 Msa0054020:CDS
CAAACATTGGGAGTATAAGC+AGG 0.575100 1_2:+8566273 Msa0054020:CDS
ATGCTAACAACATCAGAAAG+TGG 0.579722 1_2:-8567957 None:intergenic
TAACCCGACTCAGCCTTGGA+AGG 0.583784 1_2:-8568089 None:intergenic
TCGACAACCTTAGCAAACAA+AGG 0.586507 1_2:+8566326 Msa0054020:CDS
TGCAGAACCTGTGTTTAGCA+AGG 0.605158 1_2:+8567299 Msa0054020:CDS
TTTCACGGGATCAGGTGCGA+AGG 0.618292 1_2:+8567173 Msa0054020:CDS
ATGTTGTTTACTGGAAACAT+CGG 0.642416 1_2:+8566518 Msa0054020:CDS
CAACCTTAGCAAACAAAGGG+AGG 0.643459 1_2:+8566330 Msa0054020:CDS
TGAAAGACAATCATCACCTG+TGG 0.646063 1_2:+8566627 Msa0054020:CDS
AATTGCAGTTCAGAAAGCCA+AGG 0.648370 1_2:+8567756 Msa0054020:CDS
GTAAACAACATCATCATACT+CGG 0.655371 1_2:-8566506 None:intergenic
GGATTCGAGGAAGAAAGCTA+CGG 0.661034 1_2:+8566394 Msa0054020:CDS
TTCGAGGAAGAAAGCTACGG+TGG 0.662476 1_2:+8566397 Msa0054020:CDS
CAAAACTTGATAGAGAACAA+AGG 0.676780 1_2:+8568000 Msa0054020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTAAATTTGTTTATAAGT+GGG - chr1_2:8567478-8567497 None:intergenic 15.0%
!! AATAAAACTATTTACATTAC+AGG + chr1_2:8567790-8567809 Msa0054020:CDS 15.0%
!! GAAATTCATAAATCAAAATT+TGG - chr1_2:8567830-8567849 None:intergenic 15.0%
!!! TTGTAAATTTGTTTATAAGT+GGG - chr1_2:8567478-8567497 None:intergenic 15.0%
!! AATAAAACTATTTACATTAC+AGG + chr1_2:8567790-8567809 Msa0054020:CDS 15.0%
!! GAAATTCATAAATCAAAATT+TGG - chr1_2:8567830-8567849 None:intergenic 15.0%
!! AAACAAAAGAATTGAAATTG+AGG + chr1_2:8566483-8566502 Msa0054020:CDS 20.0%
!!! TGTAAATTTGTTTATAAGTG+GGG - chr1_2:8567477-8567496 None:intergenic 20.0%
!!! CTTGTAAATTTGTTTATAAG+TGG - chr1_2:8567479-8567498 None:intergenic 20.0%
!! AAACAAAAGAATTGAAATTG+AGG + chr1_2:8566483-8566502 Msa0054020:CDS 20.0%
!!! TGTAAATTTGTTTATAAGTG+GGG - chr1_2:8567477-8567496 None:intergenic 20.0%
!!! CTTGTAAATTTGTTTATAAG+TGG - chr1_2:8567479-8567498 None:intergenic 20.0%
!! CTTTGAAAATCAGCTATAAT+TGG - chr1_2:8566196-8566215 None:intergenic 25.0%
! GAGATACTTAAAGACAATAA+TGG + chr1_2:8566373-8566392 Msa0054020:CDS 25.0%
!!! AGATTTTAAGAGAGAAGTAA+TGG + chr1_2:8567203-8567222 Msa0054020:CDS 25.0%
!! GTAAATTTGTTTATAAGTGG+GGG - chr1_2:8567476-8567495 None:intergenic 25.0%
! ATAGGATATGTGTTTATAAG+TGG + chr1_2:8567613-8567632 Msa0054020:intron 25.0%
! TAGGATATGTGTTTATAAGT+GGG + chr1_2:8567614-8567633 Msa0054020:intron 25.0%
!!! GATTGAAAGGTATTAGAATT+TGG - chr1_2:8567651-8567670 None:intergenic 25.0%
!! CTTTGAAAATCAGCTATAAT+TGG - chr1_2:8566196-8566215 None:intergenic 25.0%
! GAGATACTTAAAGACAATAA+TGG + chr1_2:8566373-8566392 Msa0054020:CDS 25.0%
!!! AGATTTTAAGAGAGAAGTAA+TGG + chr1_2:8567203-8567222 Msa0054020:CDS 25.0%
!! GTAAATTTGTTTATAAGTGG+GGG - chr1_2:8567476-8567495 None:intergenic 25.0%
! ATAGGATATGTGTTTATAAG+TGG + chr1_2:8567613-8567632 Msa0054020:intron 25.0%
! TAGGATATGTGTTTATAAGT+GGG + chr1_2:8567614-8567633 Msa0054020:intron 25.0%
!!! GATTGAAAGGTATTAGAATT+TGG - chr1_2:8567651-8567670 None:intergenic 25.0%
AGAAGAAGTAACAATCTTAG+AGG + chr1_2:8566168-8566187 Msa0054020:CDS 30.0%
!! AGCTGATTTTCAAAGAATTG+TGG + chr1_2:8566201-8566220 Msa0054020:CDS 30.0%
!! TAAAGACAATAATGGATTCG+AGG + chr1_2:8566381-8566400 Msa0054020:CDS 30.0%
AAAACATCCGGATTCAATAT+TGG + chr1_2:8566423-8566442 Msa0054020:CDS 30.0%
GTAAACAACATCATCATACT+CGG - chr1_2:8566509-8566528 None:intergenic 30.0%
! AGTATGATGATGTTGTTTAC+TGG + chr1_2:8566509-8566528 Msa0054020:CDS 30.0%
! ATGTTGTTTACTGGAAACAT+CGG + chr1_2:8566518-8566537 Msa0054020:CDS 30.0%
! CCTCTTTTAAACTTGGAAAA+TGG - chr1_2:8566959-8566978 None:intergenic 30.0%
! CCATTTTCCAAGTTTAAAAG+AGG + chr1_2:8566956-8566975 Msa0054020:CDS 30.0%
! TTTTCCAAGTTTAAAAGAGG+AGG + chr1_2:8566959-8566978 Msa0054020:CDS 30.0%
! ATTACCTCCTCTTTTAAACT+TGG - chr1_2:8566966-8566985 None:intergenic 30.0%
TTACTTGCACATAAATTTCC+AGG + chr1_2:8567122-8567141 Msa0054020:intron 30.0%
! AACGGATGTTGAAATTTTCA+CGG + chr1_2:8567158-8567177 Msa0054020:CDS 30.0%
!! AAAGTTATTTCCCTTTTTGC+AGG - chr1_2:8567240-8567259 None:intergenic 30.0%
AACAATTGGAGTAAACCATA+TGG + chr1_2:8567329-8567348 Msa0054020:intron 30.0%
ACAATTGGAGTAAACCATAT+GGG + chr1_2:8567330-8567349 Msa0054020:intron 30.0%
! AGTAACAGTTTTTACCTGAT+CGG - chr1_2:8567367-8567386 None:intergenic 30.0%
! TCAGGTAAAAACTGTTACTT+TGG + chr1_2:8567368-8567387 Msa0054020:intron 30.0%
! ATTGTCTTCAAATTTGGGTT+AGG + chr1_2:8567408-8567427 Msa0054020:intron 30.0%
! ATTTGTTAGTAGTCTCACAT+TGG + chr1_2:8567590-8567609 Msa0054020:intron 30.0%
AGGATATGTGTTTATAAGTG+GGG + chr1_2:8567615-8567634 Msa0054020:intron 30.0%
TGCACAAAAACAAGATTGAA+AGG - chr1_2:8567664-8567683 None:intergenic 30.0%
TAATTTCGACAAACAATTGC+AGG + chr1_2:8567696-8567715 Msa0054020:intron 30.0%
GGTGAGAAAAAGAGAAAAAA+TGG + chr1_2:8567717-8567736 Msa0054020:intron 30.0%
AGAAAAAATGGCAAAGCTAA+GGG + chr1_2:8567729-8567748 Msa0054020:CDS 30.0%
TTTATTAAGTTCCGTTTCCT+TGG - chr1_2:8567776-8567795 None:intergenic 30.0%
CAAAACTTGATAGAGAACAA+AGG + chr1_2:8568000-8568019 Msa0054020:CDS 30.0%
AGAAGAAGTAACAATCTTAG+AGG + chr1_2:8566168-8566187 Msa0054020:CDS 30.0%
!! AGCTGATTTTCAAAGAATTG+TGG + chr1_2:8566201-8566220 Msa0054020:CDS 30.0%
!! TAAAGACAATAATGGATTCG+AGG + chr1_2:8566381-8566400 Msa0054020:CDS 30.0%
AAAACATCCGGATTCAATAT+TGG + chr1_2:8566423-8566442 Msa0054020:CDS 30.0%
GTAAACAACATCATCATACT+CGG - chr1_2:8566509-8566528 None:intergenic 30.0%
! AGTATGATGATGTTGTTTAC+TGG + chr1_2:8566509-8566528 Msa0054020:CDS 30.0%
! ATGTTGTTTACTGGAAACAT+CGG + chr1_2:8566518-8566537 Msa0054020:CDS 30.0%
! CCTCTTTTAAACTTGGAAAA+TGG - chr1_2:8566959-8566978 None:intergenic 30.0%
! CCATTTTCCAAGTTTAAAAG+AGG + chr1_2:8566956-8566975 Msa0054020:CDS 30.0%
! TTTTCCAAGTTTAAAAGAGG+AGG + chr1_2:8566959-8566978 Msa0054020:CDS 30.0%
! ATTACCTCCTCTTTTAAACT+TGG - chr1_2:8566966-8566985 None:intergenic 30.0%
TTACTTGCACATAAATTTCC+AGG + chr1_2:8567122-8567141 Msa0054020:intron 30.0%
! AACGGATGTTGAAATTTTCA+CGG + chr1_2:8567158-8567177 Msa0054020:CDS 30.0%
!! AAAGTTATTTCCCTTTTTGC+AGG - chr1_2:8567240-8567259 None:intergenic 30.0%
AACAATTGGAGTAAACCATA+TGG + chr1_2:8567329-8567348 Msa0054020:intron 30.0%
ACAATTGGAGTAAACCATAT+GGG + chr1_2:8567330-8567349 Msa0054020:intron 30.0%
! AGTAACAGTTTTTACCTGAT+CGG - chr1_2:8567367-8567386 None:intergenic 30.0%
! TCAGGTAAAAACTGTTACTT+TGG + chr1_2:8567368-8567387 Msa0054020:intron 30.0%
! ATTGTCTTCAAATTTGGGTT+AGG + chr1_2:8567408-8567427 Msa0054020:intron 30.0%
! ATTTGTTAGTAGTCTCACAT+TGG + chr1_2:8567590-8567609 Msa0054020:intron 30.0%
AGGATATGTGTTTATAAGTG+GGG + chr1_2:8567615-8567634 Msa0054020:intron 30.0%
TGCACAAAAACAAGATTGAA+AGG - chr1_2:8567664-8567683 None:intergenic 30.0%
TAATTTCGACAAACAATTGC+AGG + chr1_2:8567696-8567715 Msa0054020:intron 30.0%
GGTGAGAAAAAGAGAAAAAA+TGG + chr1_2:8567717-8567736 Msa0054020:intron 30.0%
AGAAAAAATGGCAAAGCTAA+GGG + chr1_2:8567729-8567748 Msa0054020:CDS 30.0%
TTTATTAAGTTCCGTTTCCT+TGG - chr1_2:8567776-8567795 None:intergenic 30.0%
CAAAACTTGATAGAGAACAA+AGG + chr1_2:8568000-8568019 Msa0054020:CDS 30.0%
TAGCTAATCTCACCAAACAT+TGG + chr1_2:8566260-8566279 Msa0054020:CDS 35.0%
AGCTAATCTCACCAAACATT+GGG + chr1_2:8566261-8566280 Msa0054020:CDS 35.0%
ACACCATCCAATATTGAATC+CGG - chr1_2:8566433-8566452 None:intergenic 35.0%
!! TATTGGATGGTGTTGCAATA+AGG + chr1_2:8566440-8566459 Msa0054020:CDS 35.0%
ACGAGATATGGAAAAACGAT+TGG + chr1_2:8566543-8566562 Msa0054020:CDS 35.0%
AGATATGGAAAAACGATTGG+AGG + chr1_2:8566546-8566565 Msa0054020:CDS 35.0%
GATATGGAAAAACGATTGGA+GGG + chr1_2:8566547-8566566 Msa0054020:CDS 35.0%
CAAAATGCACCTGTTGTTAT+AGG + chr1_2:8566703-8566722 Msa0054020:intron 35.0%
ATAAATTTCCAGGACCTCAT+AGG + chr1_2:8567132-8567151 Msa0054020:intron 35.0%
! ACGGATGTTGAAATTTTCAC+GGG + chr1_2:8567159-8567178 Msa0054020:CDS 35.0%
! AAGAGAGAAGTAATGGAGAA+AGG + chr1_2:8567210-8567229 Msa0054020:CDS 35.0%
AGAAAGGAATACCTGCAAAA+AGG + chr1_2:8567226-8567245 Msa0054020:CDS 35.0%
GAAAGGAATACCTGCAAAAA+GGG + chr1_2:8567227-8567246 Msa0054020:CDS 35.0%
!!! ACTTTTGAGACAGAACTGTT+TGG + chr1_2:8567255-8567274 Msa0054020:CDS 35.0%
ACCTGCATTGTCTTCAAATT+TGG + chr1_2:8567402-8567421 Msa0054020:intron 35.0%
CCTGCATTGTCTTCAAATTT+GGG + chr1_2:8567403-8567422 Msa0054020:intron 35.0%
!!! CCTTACAAGTTGGTTTTGTA+AGG - chr1_2:8567444-8567463 None:intergenic 35.0%
CCTTACAAAACCAACTTGTA+AGG + chr1_2:8567441-8567460 Msa0054020:intron 35.0%
TTAGTAGTCTCACATTGGAT+AGG + chr1_2:8567595-8567614 Msa0054020:intron 35.0%
GGATATGTGTTTATAAGTGG+GGG + chr1_2:8567616-8567635 Msa0054020:intron 35.0%
GAGAAAAAATGGCAAAGCTA+AGG + chr1_2:8567728-8567747 Msa0054020:CDS 35.0%
ATTGTCTCCTCTATTACAAG+GGG - chr1_2:8567891-8567910 None:intergenic 35.0%
CATTGTCTCCTCTATTACAA+GGG - chr1_2:8567892-8567911 None:intergenic 35.0%
TCATTGTCTCCTCTATTACA+AGG - chr1_2:8567893-8567912 None:intergenic 35.0%
ATGCTAACAACATCAGAAAG+TGG - chr1_2:8567960-8567979 None:intergenic 35.0%
ACTTTCTGATGTTGTTAGCA+TGG + chr1_2:8567959-8567978 Msa0054020:CDS 35.0%
CAAATCTCCTGAAGATATCA+TGG - chr1_2:8568039-8568058 None:intergenic 35.0%
CATGATATCTTCAGGAGATT+TGG + chr1_2:8568037-8568056 Msa0054020:CDS 35.0%
TGATATACTTGATCCTTCCA+AGG + chr1_2:8568076-8568095 Msa0054020:CDS 35.0%
TAGCTAATCTCACCAAACAT+TGG + chr1_2:8566260-8566279 Msa0054020:CDS 35.0%
AGCTAATCTCACCAAACATT+GGG + chr1_2:8566261-8566280 Msa0054020:CDS 35.0%
ACACCATCCAATATTGAATC+CGG - chr1_2:8566433-8566452 None:intergenic 35.0%
!! TATTGGATGGTGTTGCAATA+AGG + chr1_2:8566440-8566459 Msa0054020:CDS 35.0%
ACGAGATATGGAAAAACGAT+TGG + chr1_2:8566543-8566562 Msa0054020:CDS 35.0%
AGATATGGAAAAACGATTGG+AGG + chr1_2:8566546-8566565 Msa0054020:CDS 35.0%
GATATGGAAAAACGATTGGA+GGG + chr1_2:8566547-8566566 Msa0054020:CDS 35.0%
CAAAATGCACCTGTTGTTAT+AGG + chr1_2:8566703-8566722 Msa0054020:intron 35.0%
ATAAATTTCCAGGACCTCAT+AGG + chr1_2:8567132-8567151 Msa0054020:intron 35.0%
! ACGGATGTTGAAATTTTCAC+GGG + chr1_2:8567159-8567178 Msa0054020:CDS 35.0%
! AAGAGAGAAGTAATGGAGAA+AGG + chr1_2:8567210-8567229 Msa0054020:CDS 35.0%
AGAAAGGAATACCTGCAAAA+AGG + chr1_2:8567226-8567245 Msa0054020:CDS 35.0%
GAAAGGAATACCTGCAAAAA+GGG + chr1_2:8567227-8567246 Msa0054020:CDS 35.0%
!!! ACTTTTGAGACAGAACTGTT+TGG + chr1_2:8567255-8567274 Msa0054020:CDS 35.0%
ACCTGCATTGTCTTCAAATT+TGG + chr1_2:8567402-8567421 Msa0054020:intron 35.0%
CCTGCATTGTCTTCAAATTT+GGG + chr1_2:8567403-8567422 Msa0054020:intron 35.0%
!!! CCTTACAAGTTGGTTTTGTA+AGG - chr1_2:8567444-8567463 None:intergenic 35.0%
CCTTACAAAACCAACTTGTA+AGG + chr1_2:8567441-8567460 Msa0054020:intron 35.0%
TTAGTAGTCTCACATTGGAT+AGG + chr1_2:8567595-8567614 Msa0054020:intron 35.0%
GGATATGTGTTTATAAGTGG+GGG + chr1_2:8567616-8567635 Msa0054020:intron 35.0%
GAGAAAAAATGGCAAAGCTA+AGG + chr1_2:8567728-8567747 Msa0054020:CDS 35.0%
ATTGTCTCCTCTATTACAAG+GGG - chr1_2:8567891-8567910 None:intergenic 35.0%
CATTGTCTCCTCTATTACAA+GGG - chr1_2:8567892-8567911 None:intergenic 35.0%
TCATTGTCTCCTCTATTACA+AGG - chr1_2:8567893-8567912 None:intergenic 35.0%
ATGCTAACAACATCAGAAAG+TGG - chr1_2:8567960-8567979 None:intergenic 35.0%
ACTTTCTGATGTTGTTAGCA+TGG + chr1_2:8567959-8567978 Msa0054020:CDS 35.0%
CAAATCTCCTGAAGATATCA+TGG - chr1_2:8568039-8568058 None:intergenic 35.0%
CATGATATCTTCAGGAGATT+TGG + chr1_2:8568037-8568056 Msa0054020:CDS 35.0%
TGATATACTTGATCCTTCCA+AGG + chr1_2:8568076-8568095 Msa0054020:CDS 35.0%
CTGCTTATACTCCCAATGTT+TGG - chr1_2:8566275-8566294 None:intergenic 40.0%
! CAAACATTGGGAGTATAAGC+AGG + chr1_2:8566273-8566292 Msa0054020:CDS 40.0%
TCGACAACCTTAGCAAACAA+AGG + chr1_2:8566326-8566345 Msa0054020:CDS 40.0%
CGACAACCTTAGCAAACAAA+GGG + chr1_2:8566327-8566346 Msa0054020:CDS 40.0%
CATCCGGATTCAATATTGGA+TGG + chr1_2:8566427-8566446 Msa0054020:CDS 40.0%
!! AACGATTGGAGGGAAGTATT+CGG + chr1_2:8566557-8566576 Msa0054020:CDS 40.0%
TGAAAGACAATCATCACCTG+TGG + chr1_2:8566627-8566646 Msa0054020:CDS 40.0%
ACCTGTTGTTATAGGCCATT+AGG + chr1_2:8566711-8566730 Msa0054020:intron 40.0%
ACCTAATGGCCTATAACAAC+AGG - chr1_2:8566715-8566734 None:intergenic 40.0%
ACTCGTTGTAGTGTACCTAA+TGG - chr1_2:8566729-8566748 None:intergenic 40.0%
! TGCCATTTCAATGAATTCCC+AGG + chr1_2:8566902-8566921 Msa0054020:intron 40.0%
GTCCTGGGAATTCATTGAAA+TGG - chr1_2:8566907-8566926 None:intergenic 40.0%
GAGGAGGTAATGATTCTTGT+TGG + chr1_2:8566975-8566994 Msa0054020:intron 40.0%
GAGGTAATGATTCTTGTTGG+AGG + chr1_2:8566978-8566997 Msa0054020:intron 40.0%
!! CAACATCCGTTTTTCCTATG+AGG - chr1_2:8567149-8567168 None:intergenic 40.0%
! GTTGAAATTTTCACGGGATC+AGG + chr1_2:8567165-8567184 Msa0054020:CDS 40.0%
TGGAGTAAACCATATGGGAA+TGG + chr1_2:8567335-8567354 Msa0054020:intron 40.0%
! CGGTTATTTCCATTCCCATA+TGG - chr1_2:8567347-8567366 None:intergenic 40.0%
CCCAAATTTGAAGACAATGC+AGG - chr1_2:8567406-8567425 None:intergenic 40.0%
!!! TGGTTTTGTAAGGATGAGTC+AGG - chr1_2:8567434-8567453 None:intergenic 40.0%
AAGCCATATCTCATCCAATG+TGG + chr1_2:8567496-8567515 Msa0054020:intron 40.0%
TGACCTTAGTTGCCTGATAT+CGG - chr1_2:8567537-8567556 None:intergenic 40.0%
AATTGCAGTTCAGAAAGCCA+AGG + chr1_2:8567756-8567775 Msa0054020:CDS 40.0%
AGTTCAGAAAGCCAAGGAAA+CGG + chr1_2:8567762-8567781 Msa0054020:CDS 40.0%
TTCTTGACCCCTTGTAATAG+AGG + chr1_2:8567881-8567900 Msa0054020:intron 40.0%
AATGAGAGCAAAACAAGTGC+TGG + chr1_2:8567908-8567927 Msa0054020:CDS 40.0%
TTGGATGCCATGATATCTTC+AGG + chr1_2:8568029-8568048 Msa0054020:CDS 40.0%
CTGCTTATACTCCCAATGTT+TGG - chr1_2:8566275-8566294 None:intergenic 40.0%
! CAAACATTGGGAGTATAAGC+AGG + chr1_2:8566273-8566292 Msa0054020:CDS 40.0%
TCGACAACCTTAGCAAACAA+AGG + chr1_2:8566326-8566345 Msa0054020:CDS 40.0%
CGACAACCTTAGCAAACAAA+GGG + chr1_2:8566327-8566346 Msa0054020:CDS 40.0%
CATCCGGATTCAATATTGGA+TGG + chr1_2:8566427-8566446 Msa0054020:CDS 40.0%
!! AACGATTGGAGGGAAGTATT+CGG + chr1_2:8566557-8566576 Msa0054020:CDS 40.0%
TGAAAGACAATCATCACCTG+TGG + chr1_2:8566627-8566646 Msa0054020:CDS 40.0%
ACCTGTTGTTATAGGCCATT+AGG + chr1_2:8566711-8566730 Msa0054020:intron 40.0%
ACCTAATGGCCTATAACAAC+AGG - chr1_2:8566715-8566734 None:intergenic 40.0%
ACTCGTTGTAGTGTACCTAA+TGG - chr1_2:8566729-8566748 None:intergenic 40.0%
! TGCCATTTCAATGAATTCCC+AGG + chr1_2:8566902-8566921 Msa0054020:intron 40.0%
GTCCTGGGAATTCATTGAAA+TGG - chr1_2:8566907-8566926 None:intergenic 40.0%
GAGGAGGTAATGATTCTTGT+TGG + chr1_2:8566975-8566994 Msa0054020:intron 40.0%
GAGGTAATGATTCTTGTTGG+AGG + chr1_2:8566978-8566997 Msa0054020:intron 40.0%
!! CAACATCCGTTTTTCCTATG+AGG - chr1_2:8567149-8567168 None:intergenic 40.0%
! GTTGAAATTTTCACGGGATC+AGG + chr1_2:8567165-8567184 Msa0054020:CDS 40.0%
TGGAGTAAACCATATGGGAA+TGG + chr1_2:8567335-8567354 Msa0054020:intron 40.0%
! CGGTTATTTCCATTCCCATA+TGG - chr1_2:8567347-8567366 None:intergenic 40.0%
CCCAAATTTGAAGACAATGC+AGG - chr1_2:8567406-8567425 None:intergenic 40.0%
!!! TGGTTTTGTAAGGATGAGTC+AGG - chr1_2:8567434-8567453 None:intergenic 40.0%
AAGCCATATCTCATCCAATG+TGG + chr1_2:8567496-8567515 Msa0054020:intron 40.0%
TGACCTTAGTTGCCTGATAT+CGG - chr1_2:8567537-8567556 None:intergenic 40.0%
AATTGCAGTTCAGAAAGCCA+AGG + chr1_2:8567756-8567775 Msa0054020:CDS 40.0%
AGTTCAGAAAGCCAAGGAAA+CGG + chr1_2:8567762-8567781 Msa0054020:CDS 40.0%
TTCTTGACCCCTTGTAATAG+AGG + chr1_2:8567881-8567900 Msa0054020:intron 40.0%
AATGAGAGCAAAACAAGTGC+TGG + chr1_2:8567908-8567927 Msa0054020:CDS 40.0%
TTGGATGCCATGATATCTTC+AGG + chr1_2:8568029-8568048 Msa0054020:CDS 40.0%
CAACCTTAGCAAACAAAGGG+AGG + chr1_2:8566330-8566349 Msa0054020:CDS 45.0%
! CTTCCTCCCTTTGTTTGCTA+AGG - chr1_2:8566336-8566355 None:intergenic 45.0%
GGATTCGAGGAAGAAAGCTA+CGG + chr1_2:8566394-8566413 Msa0054020:CDS 45.0%
CTACGGTGGAGAAAAACATC+CGG + chr1_2:8566411-8566430 Msa0054020:CDS 45.0%
GAAACATCGGTCACGAGATA+TGG + chr1_2:8566531-8566550 Msa0054020:CDS 45.0%
ATCTGTGACAGTTCTTCCAC+AGG - chr1_2:8566646-8566665 None:intergenic 45.0%
ATAGCGCAACTCTTTGTCCT+GGG - chr1_2:8566922-8566941 None:intergenic 45.0%
!! TTGTTGGAGGTCTTGTTGCA+AGG + chr1_2:8566991-8567010 Msa0054020:intron 45.0%
CCAGGACCTCATAGGAAAAA+CGG + chr1_2:8567140-8567159 Msa0054020:intron 45.0%
TGCAGAACCTGTGTTTAGCA+AGG + chr1_2:8567299-8567318 Msa0054020:CDS 45.0%
AGCAAGGCAGGAGAAACAAT+TGG + chr1_2:8567315-8567334 Msa0054020:CDS 45.0%
GGGAATGGAAATAACCGATC+AGG + chr1_2:8567350-8567369 Msa0054020:intron 45.0%
GCAACTCAGACCTTACAAGT+TGG - chr1_2:8567454-8567473 None:intergenic 45.0%
AGGCCACATTGGATGAGATA+TGG - chr1_2:8567502-8567521 None:intergenic 45.0%
TCACACTTCATAGGCCACAT+TGG - chr1_2:8567513-8567532 None:intergenic 45.0%
GATATCGGGTCACACTTCAT+AGG - chr1_2:8567522-8567541 None:intergenic 45.0%
ATGAAGTGTGACCCGATATC+AGG + chr1_2:8567522-8567541 Msa0054020:intron 45.0%
GACCTTAGTTGCCTGATATC+GGG - chr1_2:8567536-8567555 None:intergenic 45.0%
TAGAGAACAAAGGCAGCTCT+TGG + chr1_2:8568010-8568029 Msa0054020:CDS 45.0%
CAACCTTAGCAAACAAAGGG+AGG + chr1_2:8566330-8566349 Msa0054020:CDS 45.0%
! CTTCCTCCCTTTGTTTGCTA+AGG - chr1_2:8566336-8566355 None:intergenic 45.0%
GGATTCGAGGAAGAAAGCTA+CGG + chr1_2:8566394-8566413 Msa0054020:CDS 45.0%
CTACGGTGGAGAAAAACATC+CGG + chr1_2:8566411-8566430 Msa0054020:CDS 45.0%
GAAACATCGGTCACGAGATA+TGG + chr1_2:8566531-8566550 Msa0054020:CDS 45.0%
ATCTGTGACAGTTCTTCCAC+AGG - chr1_2:8566646-8566665 None:intergenic 45.0%
ATAGCGCAACTCTTTGTCCT+GGG - chr1_2:8566922-8566941 None:intergenic 45.0%
!! TTGTTGGAGGTCTTGTTGCA+AGG + chr1_2:8566991-8567010 Msa0054020:intron 45.0%
CCAGGACCTCATAGGAAAAA+CGG + chr1_2:8567140-8567159 Msa0054020:intron 45.0%
TGCAGAACCTGTGTTTAGCA+AGG + chr1_2:8567299-8567318 Msa0054020:CDS 45.0%
AGCAAGGCAGGAGAAACAAT+TGG + chr1_2:8567315-8567334 Msa0054020:CDS 45.0%
GGGAATGGAAATAACCGATC+AGG + chr1_2:8567350-8567369 Msa0054020:intron 45.0%
GCAACTCAGACCTTACAAGT+TGG - chr1_2:8567454-8567473 None:intergenic 45.0%
AGGCCACATTGGATGAGATA+TGG - chr1_2:8567502-8567521 None:intergenic 45.0%
TCACACTTCATAGGCCACAT+TGG - chr1_2:8567513-8567532 None:intergenic 45.0%
GATATCGGGTCACACTTCAT+AGG - chr1_2:8567522-8567541 None:intergenic 45.0%
ATGAAGTGTGACCCGATATC+AGG + chr1_2:8567522-8567541 Msa0054020:intron 45.0%
GACCTTAGTTGCCTGATATC+GGG - chr1_2:8567536-8567555 None:intergenic 45.0%
TAGAGAACAAAGGCAGCTCT+TGG + chr1_2:8568010-8568029 Msa0054020:CDS 45.0%
TGTCGAGCTCTTCTCGAAGA+AGG - chr1_2:8566312-8566331 None:intergenic 50.0%
TTCGAGGAAGAAAGCTACGG+TGG + chr1_2:8566397-8566416 Msa0054020:CDS 50.0%
GATAGCGCAACTCTTTGTCC+TGG - chr1_2:8566923-8566942 None:intergenic 50.0%
!! CCGTTTTTCCTATGAGGTCC+TGG - chr1_2:8567143-8567162 None:intergenic 50.0%
GAACCTGTGTTTAGCAAGGC+AGG + chr1_2:8567303-8567322 Msa0054020:CDS 50.0%
TCTCCTGCCTTGCTAAACAC+AGG - chr1_2:8567309-8567328 None:intergenic 50.0%
GACCCGATATCAGGCAACTA+AGG + chr1_2:8567531-8567550 Msa0054020:intron 50.0%
ACGCTTCAGATGTCTAGTCC+TGG + chr1_2:8567556-8567575 Msa0054020:intron 50.0%
CGCTTCAGATGTCTAGTCCT+GGG + chr1_2:8567557-8567576 Msa0054020:intron 50.0%
ATGTCTAGTCCTGGGCGTAA+GGG + chr1_2:8567565-8567584 Msa0054020:intron 50.0%
TGATCCTTCCAAGGCTGAGT+CGG + chr1_2:8568085-8568104 Msa0054020:CDS 50.0%
TGTCGAGCTCTTCTCGAAGA+AGG - chr1_2:8566312-8566331 None:intergenic 50.0%
TTCGAGGAAGAAAGCTACGG+TGG + chr1_2:8566397-8566416 Msa0054020:CDS 50.0%
GATAGCGCAACTCTTTGTCC+TGG - chr1_2:8566923-8566942 None:intergenic 50.0%
!! CCGTTTTTCCTATGAGGTCC+TGG - chr1_2:8567143-8567162 None:intergenic 50.0%
GAACCTGTGTTTAGCAAGGC+AGG + chr1_2:8567303-8567322 Msa0054020:CDS 50.0%
TCTCCTGCCTTGCTAAACAC+AGG - chr1_2:8567309-8567328 None:intergenic 50.0%
GACCCGATATCAGGCAACTA+AGG + chr1_2:8567531-8567550 Msa0054020:intron 50.0%
ACGCTTCAGATGTCTAGTCC+TGG + chr1_2:8567556-8567575 Msa0054020:intron 50.0%
CGCTTCAGATGTCTAGTCCT+GGG + chr1_2:8567557-8567576 Msa0054020:intron 50.0%
ATGTCTAGTCCTGGGCGTAA+GGG + chr1_2:8567565-8567584 Msa0054020:intron 50.0%
TGATCCTTCCAAGGCTGAGT+CGG + chr1_2:8568085-8568104 Msa0054020:CDS 50.0%
TTTCACGGGATCAGGTGCGA+AGG + chr1_2:8567173-8567192 Msa0054020:CDS 55.0%
GATGTCTAGTCCTGGGCGTA+AGG + chr1_2:8567564-8567583 Msa0054020:intron 55.0%
AACAAATCGCCCTTACGCCC+AGG - chr1_2:8567577-8567596 None:intergenic 55.0%
GATCCTTCCAAGGCTGAGTC+GGG + chr1_2:8568086-8568105 Msa0054020:CDS 55.0%
TAACCCGACTCAGCCTTGGA+AGG - chr1_2:8568092-8568111 None:intergenic 55.0%
TTTCACGGGATCAGGTGCGA+AGG + chr1_2:8567173-8567192 Msa0054020:CDS 55.0%
GATGTCTAGTCCTGGGCGTA+AGG + chr1_2:8567564-8567583 Msa0054020:intron 55.0%
AACAAATCGCCCTTACGCCC+AGG - chr1_2:8567577-8567596 None:intergenic 55.0%
GATCCTTCCAAGGCTGAGTC+GGG + chr1_2:8568086-8568105 Msa0054020:CDS 55.0%
TAACCCGACTCAGCCTTGGA+AGG - chr1_2:8568092-8568111 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 8566151 8568112 8566151 ID=Msa0054020;Name=Msa0054020
chr1_2 mRNA 8566151 8568112 8566151 ID=Msa0054020-mRNA-1;Parent=Msa0054020;Name=Msa0054020-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|5|0|373
chr1_2 exon 8566151 8566714 8566151 ID=Msa0054020-mRNA-1:exon:3047;Parent=Msa0054020-mRNA-1
chr1_2 exon 8566924 8566980 8566924 ID=Msa0054020-mRNA-1:exon:3048;Parent=Msa0054020-mRNA-1
chr1_2 exon 8567144 8567338 8567144 ID=Msa0054020-mRNA-1:exon:3049;Parent=Msa0054020-mRNA-1
chr1_2 exon 8567718 8567811 8567718 ID=Msa0054020-mRNA-1:exon:3050;Parent=Msa0054020-mRNA-1
chr1_2 exon 8567901 8568112 8567901 ID=Msa0054020-mRNA-1:exon:3051;Parent=Msa0054020-mRNA-1
chr1_2 CDS 8566151 8566714 8566151 ID=Msa0054020-mRNA-1:cds;Parent=Msa0054020-mRNA-1
chr1_2 CDS 8566924 8566980 8566924 ID=Msa0054020-mRNA-1:cds;Parent=Msa0054020-mRNA-1
chr1_2 CDS 8567144 8567338 8567144 ID=Msa0054020-mRNA-1:cds;Parent=Msa0054020-mRNA-1
chr1_2 CDS 8567718 8567811 8567718 ID=Msa0054020-mRNA-1:cds;Parent=Msa0054020-mRNA-1
chr1_2 CDS 8567901 8568112 8567901 ID=Msa0054020-mRNA-1:cds;Parent=Msa0054020-mRNA-1
Gene Sequence

>Msa0054020

ATGGATCAAGATATATTAGAAGAAGTAACAATCTTAGAGGAACCAATTATAGCTGATTTTCAAAGAATTGTGGAGCTTACAGATTATACAGATATAGCGTCTTCTCAGTTAGCTAATCTCACCAAACATTGGGAGTATAAGCAGGCGAATGCAGTTTGCCTTCTTCGAGAAGAGCTCGACAACCTTAGCAAACAAAGGGAGGAAGTTGAGCTTAAAAAGTGTGAGATACTTAAAGACAATAATGGATTCGAGGAAGAAAGCTACGGTGGAGAAAAACATCCGGATTCAATATTGGATGGTGTTGCAATAAGGAAAAATGACGCTGTCATTCAAAACAAAAGAATTGAAATTGAGGCCGAGTATGATGATGTTGTTTACTGGAAACATCGGTCACGAGATATGGAAAAACGATTGGAGGGAAGTATTCGGAGAGAAGAAATATTAAAAGAAAAGTTGCAAGAAAGTACAGAGATTATTGAAAGACAATCATCACCTGTGGAAGAACTGTCACAGATTCTTAAGAGAGCAGATAATTTCTTACATTTTATACTTCAAAATGCACCTGACAAAGAGTTGCGCTATCGTTTTATCTATAACCATTTTCCAAGTTTAAAAGAGGAGGACCTCATAGGAAAAACGGATGTTGAAATTTTCACGGGATCAGGTGCGAAGGAATCTCAAGATTTTAAGAGAGAAGTAATGGAGAAAGGAATACCTGCAAAAAGGGAAATAACTTTTGAGACAGAACTGTTTGGATCAAAGACATTTTTGTTGTATGCAGAACCTGTGTTTAGCAAGGCAGGAGAAACAATTGGAGTGAGAAAAAGAGAAAAAATGGCAAAGCTAAGGGAAGAAATTGCAGTTCAGAAAGCCAAGGAAACGGAACTTAATAAAACTATTTACATTACAGAGGAGACAATGAGAGCAAAACAAGTGCTGGCAACAATGTCTCATGAGATAAGATCACCACTTTCTGATGTTGTTAGCATGGCTAAAATTCTTACTACAACAAAACTTGATAGAGAACAAAGGCAGCTCTTGGATGCCATGATATCTTCAGGAGATTTGGTTCTTCAACATATTACTGATATACTTGATCCTTCCAAGGCTGAGTCGGGTTAG

Protein sequence

>Msa0054020

MDQDILEEVTILEEPIIADFQRIVELTDYTDIASSQLANLTKHWEYKQANAVCLLREELDNLSKQREEVELKKCEILKDNNGFEEESYGGEKHPDSILDGVAIRKNDAVIQNKRIEIEAEYDDVVYWKHRSRDMEKRLEGSIRREEILKEKLQESTEIIERQSSPVEELSQILKRADNFLHFILQNAPDKELRYRFIYNHFPSLKEEDLIGKTDVEIFTGSGAKESQDFKREVMEKGIPAKREITFETELFGSKTFLLYAEPVFSKAGETIGVRKREKMAKLREEIAVQKAKETELNKTIYITEETMRAKQVLATMSHEIRSPLSDVVSMAKILTTTKLDREQRQLLDAMISSGDLVLQHITDILDPSKAESG*