Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0096590 | XP_013465848.1 | 88.462 | 390 | 33 | 2 | 1 | 379 | 1 | 389 | 0.0 | 691 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0096590 | sp|Q3S4A7|AHK5_ARATH | 61.364 | 396 | 129 | 5 | 2 | 379 | 42 | 431 | 5.06e-151 | 452 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0096590 | A0A072VD15 | 88.462 | 390 | 33 | 2 | 1 | 379 | 1 | 389 | 0.0 | 691 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005610 | Msa0096590 | 0.861747 | 8.257150e-64 | -8.615850e-47 |
| Msa0010150 | Msa0096590 | 0.809346 | 1.979953e-50 | -8.615850e-47 |
| Msa0054020 | Msa0096590 | 0.832287 | 1.030546e-55 | -8.615850e-47 |
| Msa0096590 | Msa0118660 | 0.816215 | 6.202887e-52 | -8.615850e-47 |
| Msa0096590 | Msa0148700 | 0.800555 | 1.364460e-48 | -8.615850e-47 |
| Msa0096590 | Msa0150920 | 0.803688 | 3.093880e-49 | -8.615850e-47 |
| Msa0096590 | Msa0209060 | 0.819735 | 9.933695e-53 | -8.615850e-47 |
| Msa0096590 | Msa0287630 | 0.800143 | 1.654843e-48 | -8.615850e-47 |
| Msa0096590 | Msa0288540 | 0.818218 | 2.198240e-52 | -8.615850e-47 |
| Msa0096590 | Msa0326770 | 0.840487 | 8.439899e-58 | -8.615850e-47 |
| Msa0096590 | Msa0366510 | 0.803733 | 3.027564e-49 | -8.615850e-47 |
| Msa0096590 | Msa0374040 | 0.809917 | 1.492763e-50 | -8.615850e-47 |
| Msa0096590 | Msa0414480 | 0.820526 | 6.547789e-53 | -8.615850e-47 |
| Msa0096590 | Msa0439000 | 0.813351 | 2.674439e-51 | -8.615850e-47 |
| Msa0096590 | Msa0439370 | 0.817527 | 3.148742e-52 | -8.615850e-47 |
| Msa0096590 | Msa0464310 | 0.811864 | 5.654815e-51 | -8.615850e-47 |
| Msa0096590 | Msa0481570 | 0.802368 | 5.799480e-49 | -8.615850e-47 |
| Msa0096590 | Msa0482790 | 0.802760 | 4.814092e-49 | -8.615850e-47 |
| Msa0096590 | Msa0515130 | 0.816807 | 4.570803e-52 | -8.615850e-47 |
| Msa0096590 | Msa0535570 | 0.804487 | 2.110260e-49 | -8.615850e-47 |
| Msa0096590 | Msa0591490 | 0.835790 | 1.366613e-56 | -8.615850e-47 |
| Msa0096590 | Msa0594630 | 0.804086 | 2.556822e-49 | -8.615850e-47 |
| Msa0096590 | Msa0602050 | 0.804474 | 2.122890e-49 | -8.615850e-47 |
| Msa0096590 | Msa0670360 | 0.811245 | 7.708013e-51 | -8.615850e-47 |
| Msa0096590 | Msa0715220 | 0.816286 | 5.981942e-52 | -8.615850e-47 |
| Msa0096590 | Msa0739750 | 0.803511 | 3.366560e-49 | -8.615850e-47 |
| Msa0096590 | Msa0768670 | 0.813777 | 2.155139e-51 | -8.615850e-47 |
| Msa0096590 | Msa0777250 | 0.804940 | 1.696658e-49 | -8.615850e-47 |
| Msa0096590 | Msa0777260 | 0.815272 | 1.006290e-51 | -8.615850e-47 |
| Msa0096590 | Msa0814230 | 0.821126 | 4.765787e-53 | -8.615850e-47 |
| Msa0096590 | Msa0861730 | 0.801415 | 9.103922e-49 | -8.615850e-47 |
| Msa0096590 | Msa0896920 | 0.819394 | 1.188620e-52 | -8.615850e-47 |
| Msa0096590 | Msa0896950 | 0.805088 | 1.580380e-49 | -8.615850e-47 |
| Msa0096590 | Msa0913550 | 0.844065 | 9.521351e-59 | -8.615850e-47 |
| Msa0096590 | Msa0946010 | 0.804774 | 1.837910e-49 | -8.615850e-47 |
| Msa0096590 | Msa0946310 | 0.812073 | 5.092676e-51 | -8.615850e-47 |
| Msa0096590 | Msa0951150 | 0.863311 | 2.726199e-64 | -8.615850e-47 |
| Msa0096590 | Msa0959700 | 0.804560 | 2.037699e-49 | -8.615850e-47 |
| Msa0096590 | Msa0967190 | 0.801048 | 1.082262e-48 | -8.615850e-47 |
| Msa0096590 | Msa0987640 | 0.862679 | 4.270824e-64 | -8.615850e-47 |
| Msa0096590 | Msa0993710 | 0.802204 | 6.269336e-49 | -8.615850e-47 |
| Msa0096590 | Msa0996980 | 0.818317 | 2.087882e-52 | -8.615850e-47 |
| Msa0096590 | Msa1022490 | 0.800210 | 1.603742e-48 | -8.615850e-47 |
| Msa0096590 | Msa1022510 | 0.811978 | 5.340551e-51 | -8.615850e-47 |
| Msa0096590 | Msa1048350 | 0.801631 | 8.219588e-49 | -8.615850e-47 |
| Msa0096590 | Msa1059660 | 0.812588 | 3.932005e-51 | -8.615850e-47 |
| Msa0096590 | Msa1061670 | 0.835524 | 1.595795e-56 | -8.615850e-47 |
| Msa0096590 | Msa1064940 | 0.800530 | 1.380523e-48 | -8.615850e-47 |
| Msa0096590 | Msa1087380 | 0.800404 | 1.464646e-48 | -8.615850e-47 |
| Msa0096590 | Msa1106680 | 0.826821 | 2.197752e-54 | -8.615850e-47 |
| Msa0096590 | Msa1106960 | 0.832180 | 1.095172e-55 | -8.615850e-47 |
| Msa0096590 | Msa1147030 | 0.803081 | 4.132875e-49 | -8.615850e-47 |
| Msa0096590 | Msa1148210 | 0.836372 | 9.727691e-57 | -8.615850e-47 |
| Msa0096590 | Msa1205910 | 0.814119 | 1.811772e-51 | -8.615850e-47 |
| Msa0096590 | Msa1236680 | 0.829111 | 6.178409e-55 | -8.615850e-47 |
| Msa0096590 | Msa1262900 | 0.800883 | 1.169452e-48 | -8.615850e-47 |
| Msa0096590 | Msa1294020 | 0.806125 | 9.572984e-50 | -8.615850e-47 |
| Msa0096590 | Msa1297390 | 0.803929 | 2.756842e-49 | -8.615850e-47 |
| Msa0096590 | Msa1309390 | 0.801690 | 7.993753e-49 | -8.615850e-47 |
| Msa0096590 | Msa1355340 | 0.802721 | 4.904757e-49 | -8.615850e-47 |
| Msa0096590 | Msa1365450 | 0.830622 | 2.647731e-55 | -8.615850e-47 |
| Msa0096590 | Msa1383560 | 0.805522 | 1.281608e-49 | -8.615850e-47 |
| Msa0096590 | Msa1431160 | 0.934803 | 2.290355e-96 | -8.615850e-47 |
| Msa0096590 | Msa1445890 | 0.829031 | 6.460097e-55 | -8.615850e-47 |
| Msa0096590 | Msa1445900 | 0.819538 | 1.102124e-52 | -8.615850e-47 |
| Msa0096590 | Msa1459610 | 0.806982 | 6.314754e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0096590 | MtrunA17_Chr1g0150531 | 88.462 | 390 | 33 | 2 | 1 | 379 | 1 | 389 | 0.0 | 691 |
| Msa0096590 | MtrunA17_Chr1g0150511 | 80.952 | 399 | 55 | 3 | 2 | 379 | 43 | 441 | 0.0 | 632 |
| Msa0096590 | MtrunA17_Chr3g0136601 | 74.623 | 398 | 80 | 4 | 2 | 379 | 39 | 435 | 0.0 | 584 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0096590 | AT5G10720.1 | 61.364 | 396 | 129 | 5 | 2 | 379 | 42 | 431 | 5.14e-152 | 452 |
| Msa0096590 | AT5G10680.2 | 46.212 | 132 | 53 | 4 | 1 | 122 | 37 | 160 | 1.53e-23 | 98.6 |
| Msa0096590 | AT5G10680.1 | 46.212 | 132 | 53 | 4 | 1 | 122 | 37 | 160 | 1.53e-23 | 98.6 |
Find 55 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAATGCACCTGTTGTTAT+AGG | 0.182020 | 1_3:+2270100 | Msa0096590:CDS |
| CTTTGAAAATCAGCTATAAT+TGG | 0.203037 | 1_3:-2269590 | None:intergenic |
| AATAAAACTATTTACATTAC+AGG | 0.248651 | 1_3:+2271187 | Msa0096590:CDS |
| CATGATATCTTCAGGAGATT+TGG | 0.274046 | 1_3:+2271434 | Msa0096590:CDS |
| AGACAGGAATACCTGGAAAA+AGG | 0.288028 | 1_3:+2270623 | Msa0096590:CDS |
| AAAACATCCGGATTCAATAT+TGG | 0.341750 | 1_3:+2269820 | Msa0096590:CDS |
| AGAAGAAGTAACAATCTTAG+AGG | 0.346203 | 1_3:+2269565 | Msa0096590:CDS |
| GAAACATCGGTCACGAGATA+TGG | 0.358103 | 1_3:+2269928 | Msa0096590:CDS |
| AGTATGATGATGTTGTTTAC+TGG | 0.359184 | 1_3:+2269906 | Msa0096590:CDS |
| AAGAGAGAAGTAATGGAGAC+AGG | 0.390568 | 1_3:+2270607 | Msa0096590:CDS |
| CTTCCTCCCTTTGTTTGCTA+AGG | 0.415873 | 1_3:-2269730 | None:intergenic |
| TTTATTAAGTTCCGTTTCCT+TGG | 0.423794 | 1_3:-2271170 | None:intergenic |
| TATTGGATGGTGTTGCAATC+AGG | 0.426610 | 1_3:+2269837 | Msa0096590:CDS |
| ATAAATTTCTAGGACCTCAT+AGG | 0.429883 | 1_3:+2270529 | Msa0096590:intron |
| AACGATTGGAGGGAAGTATT+CGG | 0.430328 | 1_3:+2269954 | Msa0096590:CDS |
| GAGATACTTAAAGACAATAA+TGG | 0.444436 | 1_3:+2269770 | Msa0096590:CDS |
| TTGGATGCCATGATATCTTC+AGG | 0.452888 | 1_3:+2271426 | Msa0096590:CDS |
| TAAAGACAATAATGGATTTG+AGG | 0.457522 | 1_3:+2269778 | Msa0096590:CDS |
| TAGAGAACAAAGGCAGCTCT+TGG | 0.468770 | 1_3:+2271407 | Msa0096590:CDS |
| GATCCTTCCAAGGCTGAGTC+GGG | 0.469731 | 1_3:+2271483 | Msa0096590:CDS |
| CAAATCTCCTGAAGATATCA+TGG | 0.470277 | 1_3:-2271433 | None:intergenic |
| AGCAAGGCAGGAGAAACAAT+TGG | 0.472538 | 1_3:+2270712 | Msa0096590:CDS |
| ACCTGTTGTTATAGGCCATC+AGG | 0.477859 | 1_3:+2270108 | Msa0096590:CDS |
| TTTCTAACCCGACTCAGCCT+TGG | 0.478360 | 1_3:-2271490 | None:intergenic |
| AGCTAATCTCACGAAACATT+GGG | 0.482663 | 1_3:+2269658 | Msa0096590:CDS |
| ACCTGATGGCCTATAACAAC+AGG | 0.486112 | 1_3:-2270109 | None:intergenic |
| GAACCTGTGTTTAGCAAGGC+AGG | 0.487467 | 1_3:+2270700 | Msa0096590:CDS |
| TGATCCTTCCAAGGCTGAGT+CGG | 0.495766 | 1_3:+2271482 | Msa0096590:CDS |
| ACACCATCCAATATTGAATC+CGG | 0.501464 | 1_3:-2269827 | None:intergenic |
| AAACAAAAGAATTGAAATTG+AGG | 0.507015 | 1_3:+2269880 | Msa0096590:CDS |
| TGTCGAGCTCTTCTCGAAGA+AGG | 0.522863 | 1_3:-2269706 | None:intergenic |
| TAGCTAATCTCACGAAACAT+TGG | 0.523948 | 1_3:+2269657 | Msa0096590:CDS |
| AATGAGAGCAAAACAAGTGC+TGG | 0.527084 | 1_3:+2271305 | Msa0096590:CDS |
| ACTTTCTGATGTTGTTAGCA+TGG | 0.533367 | 1_3:+2271356 | Msa0096590:CDS |
| CGACAACCTTAGCAAACAAA+GGG | 0.535427 | 1_3:+2269724 | Msa0096590:CDS |
| TCTCCTGCCTTGCTAAACAC+AGG | 0.549002 | 1_3:-2270703 | None:intergenic |
| GTAATGGAGACAGGAATACC+TGG | 0.552703 | 1_3:+2270616 | Msa0096590:CDS |
| CATCCGGATTCAATATTGGA+TGG | 0.554723 | 1_3:+2269824 | Msa0096590:CDS |
| GAAACATTGGGAGTATAAGC+AGG | 0.554790 | 1_3:+2269670 | Msa0096590:CDS |
| TGATATACTTGATCCTTCCA+AGG | 0.562404 | 1_3:+2271473 | Msa0096590:CDS |
| ATCTGTGACAGTTCTTCCAC+AGG | 0.563140 | 1_3:-2270040 | None:intergenic |
| AGTTCAGAAAGCCAAGGAAA+CGG | 0.563751 | 1_3:+2271159 | Msa0096590:CDS |
| ATGCTAACAACATCAGAAAG+TGG | 0.579722 | 1_3:-2271354 | None:intergenic |
| TAACCCGACTCAGCCTTGGA+AGG | 0.583784 | 1_3:-2271486 | None:intergenic |
| TCGACAACCTTAGCAAACAA+AGG | 0.586507 | 1_3:+2269723 | Msa0096590:CDS |
| TGCAGAACCTGTGTTTAGCA+AGG | 0.605158 | 1_3:+2270696 | Msa0096590:CDS |
| TTTCACGGGATCAGGTGTGA+AGG | 0.615122 | 1_3:+2270570 | Msa0096590:CDS |
| ATGTTGTTTACTGGAAACAT+CGG | 0.642416 | 1_3:+2269915 | Msa0096590:CDS |
| CAACCTTAGCAAACAAAGGG+AGG | 0.643459 | 1_3:+2269727 | Msa0096590:CDS |
| GGATTTGAGGAAGAAAGCTA+CGG | 0.643602 | 1_3:+2269791 | Msa0096590:CDS |
| TGAAAGACAATCATCACCTG+TGG | 0.646063 | 1_3:+2270024 | Msa0096590:CDS |
| AATTGCAGTTCAGAAAGCCA+AGG | 0.648370 | 1_3:+2271153 | Msa0096590:CDS |
| GTAAACAACATCATCATACT+CGG | 0.655371 | 1_3:-2269903 | None:intergenic |
| TTTGAGGAAGAAAGCTACGG+TGG | 0.675740 | 1_3:+2269794 | Msa0096590:CDS |
| CAAAACTTGATAGAGAACAA+AGG | 0.676780 | 1_3:+2271397 | Msa0096590:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAACTATTTACATTAC+AGG | + | chr1_3:2271187-2271206 | Msa0096590:CDS | 15.0% |
| !! | GAAATTCATAAATCAAAATT+TGG | - | chr1_3:2271227-2271246 | None:intergenic | 15.0% |
| !! | AATAAAACTATTTACATTAC+AGG | + | chr1_3:2271187-2271206 | Msa0096590:CDS | 15.0% |
| !! | GAAATTCATAAATCAAAATT+TGG | - | chr1_3:2271227-2271246 | None:intergenic | 15.0% |
| !! | AAACAAAAGAATTGAAATTG+AGG | + | chr1_3:2269880-2269899 | Msa0096590:CDS | 20.0% |
| !!! | TGTAAATTTGTTTATAAGTG+GGG | - | chr1_3:2270875-2270894 | None:intergenic | 20.0% |
| !!! | CTGTAAATTTGTTTATAAGT+GGG | - | chr1_3:2270876-2270895 | None:intergenic | 20.0% |
| !! | AAACAAAAGAATTGAAATTG+AGG | + | chr1_3:2269880-2269899 | Msa0096590:CDS | 20.0% |
| !!! | TGTAAATTTGTTTATAAGTG+GGG | - | chr1_3:2270875-2270894 | None:intergenic | 20.0% |
| !!! | CTGTAAATTTGTTTATAAGT+GGG | - | chr1_3:2270876-2270895 | None:intergenic | 20.0% |
| !! | CTTTGAAAATCAGCTATAAT+TGG | - | chr1_3:2269593-2269612 | None:intergenic | 25.0% |
| ! | GAGATACTTAAAGACAATAA+TGG | + | chr1_3:2269770-2269789 | Msa0096590:CDS | 25.0% |
| !!! | TAAAGACAATAATGGATTTG+AGG | + | chr1_3:2269778-2269797 | Msa0096590:CDS | 25.0% |
| ! | TTACTTGCACATAAATTTCT+AGG | + | chr1_3:2270519-2270538 | Msa0096590:intron | 25.0% |
| !!! | AGATTTTAAGAGAGAAGTAA+TGG | + | chr1_3:2270600-2270619 | Msa0096590:CDS | 25.0% |
| !! | ATTGTCTTAAAATTTGGGTT+AGG | + | chr1_3:2270805-2270824 | Msa0096590:intron | 25.0% |
| !! | TAAATTTGTTTATAAGTGGG+GGG | - | chr1_3:2270873-2270892 | None:intergenic | 25.0% |
| !! | GTAAATTTGTTTATAAGTGG+GGG | - | chr1_3:2270874-2270893 | None:intergenic | 25.0% |
| !! | CCTGTAAATTTGTTTATAAG+TGG | - | chr1_3:2270877-2270896 | None:intergenic | 25.0% |
| ! | CCACTTATAAACAAATTTAC+AGG | + | chr1_3:2270874-2270893 | Msa0096590:intron | 25.0% |
| ! | ATAGGATATGTGTTTATAAG+TGG | + | chr1_3:2271011-2271030 | Msa0096590:intron | 25.0% |
| ! | TAGGATATGTGTTTATAAGT+GGG | + | chr1_3:2271012-2271031 | Msa0096590:intron | 25.0% |
| !!! | GATTGAAAGGTATTAGAATT+TGG | - | chr1_3:2271049-2271068 | None:intergenic | 25.0% |
| !! | CTTTGAAAATCAGCTATAAT+TGG | - | chr1_3:2269593-2269612 | None:intergenic | 25.0% |
| ! | GAGATACTTAAAGACAATAA+TGG | + | chr1_3:2269770-2269789 | Msa0096590:CDS | 25.0% |
| !!! | TAAAGACAATAATGGATTTG+AGG | + | chr1_3:2269778-2269797 | Msa0096590:CDS | 25.0% |
| ! | TTACTTGCACATAAATTTCT+AGG | + | chr1_3:2270519-2270538 | Msa0096590:intron | 25.0% |
| !!! | AGATTTTAAGAGAGAAGTAA+TGG | + | chr1_3:2270600-2270619 | Msa0096590:CDS | 25.0% |
| !! | ATTGTCTTAAAATTTGGGTT+AGG | + | chr1_3:2270805-2270824 | Msa0096590:intron | 25.0% |
| !! | TAAATTTGTTTATAAGTGGG+GGG | - | chr1_3:2270873-2270892 | None:intergenic | 25.0% |
| !! | GTAAATTTGTTTATAAGTGG+GGG | - | chr1_3:2270874-2270893 | None:intergenic | 25.0% |
| !! | CCTGTAAATTTGTTTATAAG+TGG | - | chr1_3:2270877-2270896 | None:intergenic | 25.0% |
| ! | CCACTTATAAACAAATTTAC+AGG | + | chr1_3:2270874-2270893 | Msa0096590:intron | 25.0% |
| ! | ATAGGATATGTGTTTATAAG+TGG | + | chr1_3:2271011-2271030 | Msa0096590:intron | 25.0% |
| ! | TAGGATATGTGTTTATAAGT+GGG | + | chr1_3:2271012-2271031 | Msa0096590:intron | 25.0% |
| !!! | GATTGAAAGGTATTAGAATT+TGG | - | chr1_3:2271049-2271068 | None:intergenic | 25.0% |
| AGAAGAAGTAACAATCTTAG+AGG | + | chr1_3:2269565-2269584 | Msa0096590:CDS | 30.0% | |
| !! | AGCTGATTTTCAAAGAATTG+TGG | + | chr1_3:2269598-2269617 | Msa0096590:CDS | 30.0% |
| AAAACATCCGGATTCAATAT+TGG | + | chr1_3:2269820-2269839 | Msa0096590:CDS | 30.0% | |
| GTAAACAACATCATCATACT+CGG | - | chr1_3:2269906-2269925 | None:intergenic | 30.0% | |
| ! | AGTATGATGATGTTGTTTAC+TGG | + | chr1_3:2269906-2269925 | Msa0096590:CDS | 30.0% |
| ! | ATGTTGTTTACTGGAAACAT+CGG | + | chr1_3:2269915-2269934 | Msa0096590:CDS | 30.0% |
| ! | CCTCTTTTAAACTTGGAAAA+TGG | - | chr1_3:2270356-2270375 | None:intergenic | 30.0% |
| ! | CCATTTTCCAAGTTTAAAAG+AGG | + | chr1_3:2270353-2270372 | Msa0096590:CDS | 30.0% |
| ! | TTTTCCAAGTTTAAAAGAGG+AGG | + | chr1_3:2270356-2270375 | Msa0096590:CDS | 30.0% |
| ! | ATTACCTCCTCTTTTAAACT+TGG | - | chr1_3:2270363-2270382 | None:intergenic | 30.0% |
| !! | ATAAATTTCTAGGACCTCAT+AGG | + | chr1_3:2270529-2270548 | Msa0096590:intron | 30.0% |
| ! | AACGGATGTTGAAATTTTCA+CGG | + | chr1_3:2270555-2270574 | Msa0096590:CDS | 30.0% |
| !! | AAAGTTATTTCCCTTTTTCC+AGG | - | chr1_3:2270637-2270656 | None:intergenic | 30.0% |
| AACAATTGGAGTAAACCATA+TGG | + | chr1_3:2270726-2270745 | Msa0096590:intron | 30.0% | |
| ACAATTGGAGTAAACCATAT+GGG | + | chr1_3:2270727-2270746 | Msa0096590:intron | 30.0% | |
| ! | AGTAACAGTTTTTACCTGAT+CGG | - | chr1_3:2270764-2270783 | None:intergenic | 30.0% |
| ACCTGCATTGTCTTAAAATT+TGG | + | chr1_3:2270799-2270818 | Msa0096590:intron | 30.0% | |
| CCTGCATTGTCTTAAAATTT+GGG | + | chr1_3:2270800-2270819 | Msa0096590:intron | 30.0% | |
| ! | ATTTGTTAGTAGTCTCACAT+TGG | + | chr1_3:2270988-2271007 | Msa0096590:intron | 30.0% |
| AGGATATGTGTTTATAAGTG+GGG | + | chr1_3:2271013-2271032 | Msa0096590:intron | 30.0% | |
| TGCACAAAAACAAGATTGAA+AGG | - | chr1_3:2271062-2271081 | None:intergenic | 30.0% | |
| TAATTTCGACAAACAATTGC+AGG | + | chr1_3:2271093-2271112 | Msa0096590:intron | 30.0% | |
| GGTGAGAAAAAGAGAAAAAA+TGG | + | chr1_3:2271114-2271133 | Msa0096590:intron | 30.0% | |
| AGAAAAAATGGCAAAGCTAA+GGG | + | chr1_3:2271126-2271145 | Msa0096590:CDS | 30.0% | |
| TTTATTAAGTTCCGTTTCCT+TGG | - | chr1_3:2271173-2271192 | None:intergenic | 30.0% | |
| CAAAACTTGATAGAGAACAA+AGG | + | chr1_3:2271397-2271416 | Msa0096590:CDS | 30.0% | |
| AGAAGAAGTAACAATCTTAG+AGG | + | chr1_3:2269565-2269584 | Msa0096590:CDS | 30.0% | |
| !! | AGCTGATTTTCAAAGAATTG+TGG | + | chr1_3:2269598-2269617 | Msa0096590:CDS | 30.0% |
| AAAACATCCGGATTCAATAT+TGG | + | chr1_3:2269820-2269839 | Msa0096590:CDS | 30.0% | |
| GTAAACAACATCATCATACT+CGG | - | chr1_3:2269906-2269925 | None:intergenic | 30.0% | |
| ! | AGTATGATGATGTTGTTTAC+TGG | + | chr1_3:2269906-2269925 | Msa0096590:CDS | 30.0% |
| ! | ATGTTGTTTACTGGAAACAT+CGG | + | chr1_3:2269915-2269934 | Msa0096590:CDS | 30.0% |
| ! | CCTCTTTTAAACTTGGAAAA+TGG | - | chr1_3:2270356-2270375 | None:intergenic | 30.0% |
| ! | CCATTTTCCAAGTTTAAAAG+AGG | + | chr1_3:2270353-2270372 | Msa0096590:CDS | 30.0% |
| ! | TTTTCCAAGTTTAAAAGAGG+AGG | + | chr1_3:2270356-2270375 | Msa0096590:CDS | 30.0% |
| ! | ATTACCTCCTCTTTTAAACT+TGG | - | chr1_3:2270363-2270382 | None:intergenic | 30.0% |
| !! | ATAAATTTCTAGGACCTCAT+AGG | + | chr1_3:2270529-2270548 | Msa0096590:intron | 30.0% |
| ! | AACGGATGTTGAAATTTTCA+CGG | + | chr1_3:2270555-2270574 | Msa0096590:CDS | 30.0% |
| !! | AAAGTTATTTCCCTTTTTCC+AGG | - | chr1_3:2270637-2270656 | None:intergenic | 30.0% |
| AACAATTGGAGTAAACCATA+TGG | + | chr1_3:2270726-2270745 | Msa0096590:intron | 30.0% | |
| ACAATTGGAGTAAACCATAT+GGG | + | chr1_3:2270727-2270746 | Msa0096590:intron | 30.0% | |
| ! | AGTAACAGTTTTTACCTGAT+CGG | - | chr1_3:2270764-2270783 | None:intergenic | 30.0% |
| ACCTGCATTGTCTTAAAATT+TGG | + | chr1_3:2270799-2270818 | Msa0096590:intron | 30.0% | |
| CCTGCATTGTCTTAAAATTT+GGG | + | chr1_3:2270800-2270819 | Msa0096590:intron | 30.0% | |
| ! | ATTTGTTAGTAGTCTCACAT+TGG | + | chr1_3:2270988-2271007 | Msa0096590:intron | 30.0% |
| AGGATATGTGTTTATAAGTG+GGG | + | chr1_3:2271013-2271032 | Msa0096590:intron | 30.0% | |
| TGCACAAAAACAAGATTGAA+AGG | - | chr1_3:2271062-2271081 | None:intergenic | 30.0% | |
| TAATTTCGACAAACAATTGC+AGG | + | chr1_3:2271093-2271112 | Msa0096590:intron | 30.0% | |
| GGTGAGAAAAAGAGAAAAAA+TGG | + | chr1_3:2271114-2271133 | Msa0096590:intron | 30.0% | |
| AGAAAAAATGGCAAAGCTAA+GGG | + | chr1_3:2271126-2271145 | Msa0096590:CDS | 30.0% | |
| TTTATTAAGTTCCGTTTCCT+TGG | - | chr1_3:2271173-2271192 | None:intergenic | 30.0% | |
| CAAAACTTGATAGAGAACAA+AGG | + | chr1_3:2271397-2271416 | Msa0096590:CDS | 30.0% | |
| TAGCTAATCTCACGAAACAT+TGG | + | chr1_3:2269657-2269676 | Msa0096590:CDS | 35.0% | |
| AGCTAATCTCACGAAACATT+GGG | + | chr1_3:2269658-2269677 | Msa0096590:CDS | 35.0% | |
| ACACCATCCAATATTGAATC+CGG | - | chr1_3:2269830-2269849 | None:intergenic | 35.0% | |
| ACGAGATATGGAAAAACGAT+TGG | + | chr1_3:2269940-2269959 | Msa0096590:CDS | 35.0% | |
| AGATATGGAAAAACGATTGG+AGG | + | chr1_3:2269943-2269962 | Msa0096590:CDS | 35.0% | |
| GATATGGAAAAACGATTGGA+GGG | + | chr1_3:2269944-2269963 | Msa0096590:CDS | 35.0% | |
| CAAAATGCACCTGTTGTTAT+AGG | + | chr1_3:2270100-2270119 | Msa0096590:CDS | 35.0% | |
| ! | ACGGATGTTGAAATTTTCAC+GGG | + | chr1_3:2270556-2270575 | Msa0096590:CDS | 35.0% |
| !!! | ACTTTTGAGACAGAACTGTT+TGG | + | chr1_3:2270652-2270671 | Msa0096590:CDS | 35.0% |
| !!! | CCCAAATTTTAAGACAATGC+AGG | - | chr1_3:2270803-2270822 | None:intergenic | 35.0% |
| !!! | TGGTTTTGTAAGGATGAGTT+AGG | - | chr1_3:2270831-2270850 | None:intergenic | 35.0% |
| !!! | CCTTACAAGTTGGTTTTGTA+AGG | - | chr1_3:2270841-2270860 | None:intergenic | 35.0% |
| CCTTACAAAACCAACTTGTA+AGG | + | chr1_3:2270838-2270857 | Msa0096590:intron | 35.0% | |
| AAAACCAACTTGTAAGGTCT+GGG | + | chr1_3:2270844-2270863 | Msa0096590:intron | 35.0% | |
| TTAGTAGTCTCACATTGGAT+AGG | + | chr1_3:2270993-2271012 | Msa0096590:intron | 35.0% | |
| GGATATGTGTTTATAAGTGG+GGG | + | chr1_3:2271014-2271033 | Msa0096590:intron | 35.0% | |
| GAGAAAAAATGGCAAAGCTA+AGG | + | chr1_3:2271125-2271144 | Msa0096590:CDS | 35.0% | |
| ATTGTCTCCTCTATTACAAG+GGG | - | chr1_3:2271288-2271307 | None:intergenic | 35.0% | |
| CATTGTCTCCTCTATTACAA+GGG | - | chr1_3:2271289-2271308 | None:intergenic | 35.0% | |
| TCATTGTCTCCTCTATTACA+AGG | - | chr1_3:2271290-2271309 | None:intergenic | 35.0% | |
| ATGCTAACAACATCAGAAAG+TGG | - | chr1_3:2271357-2271376 | None:intergenic | 35.0% | |
| ACTTTCTGATGTTGTTAGCA+TGG | + | chr1_3:2271356-2271375 | Msa0096590:CDS | 35.0% | |
| CAAATCTCCTGAAGATATCA+TGG | - | chr1_3:2271436-2271455 | None:intergenic | 35.0% | |
| CATGATATCTTCAGGAGATT+TGG | + | chr1_3:2271434-2271453 | Msa0096590:CDS | 35.0% | |
| TGATATACTTGATCCTTCCA+AGG | + | chr1_3:2271473-2271492 | Msa0096590:CDS | 35.0% | |
| TAGCTAATCTCACGAAACAT+TGG | + | chr1_3:2269657-2269676 | Msa0096590:CDS | 35.0% | |
| AGCTAATCTCACGAAACATT+GGG | + | chr1_3:2269658-2269677 | Msa0096590:CDS | 35.0% | |
| ACACCATCCAATATTGAATC+CGG | - | chr1_3:2269830-2269849 | None:intergenic | 35.0% | |
| ACGAGATATGGAAAAACGAT+TGG | + | chr1_3:2269940-2269959 | Msa0096590:CDS | 35.0% | |
| AGATATGGAAAAACGATTGG+AGG | + | chr1_3:2269943-2269962 | Msa0096590:CDS | 35.0% | |
| GATATGGAAAAACGATTGGA+GGG | + | chr1_3:2269944-2269963 | Msa0096590:CDS | 35.0% | |
| CAAAATGCACCTGTTGTTAT+AGG | + | chr1_3:2270100-2270119 | Msa0096590:CDS | 35.0% | |
| ! | ACGGATGTTGAAATTTTCAC+GGG | + | chr1_3:2270556-2270575 | Msa0096590:CDS | 35.0% |
| !!! | ACTTTTGAGACAGAACTGTT+TGG | + | chr1_3:2270652-2270671 | Msa0096590:CDS | 35.0% |
| !!! | CCCAAATTTTAAGACAATGC+AGG | - | chr1_3:2270803-2270822 | None:intergenic | 35.0% |
| !!! | TGGTTTTGTAAGGATGAGTT+AGG | - | chr1_3:2270831-2270850 | None:intergenic | 35.0% |
| !!! | CCTTACAAGTTGGTTTTGTA+AGG | - | chr1_3:2270841-2270860 | None:intergenic | 35.0% |
| CCTTACAAAACCAACTTGTA+AGG | + | chr1_3:2270838-2270857 | Msa0096590:intron | 35.0% | |
| AAAACCAACTTGTAAGGTCT+GGG | + | chr1_3:2270844-2270863 | Msa0096590:intron | 35.0% | |
| TTAGTAGTCTCACATTGGAT+AGG | + | chr1_3:2270993-2271012 | Msa0096590:intron | 35.0% | |
| GGATATGTGTTTATAAGTGG+GGG | + | chr1_3:2271014-2271033 | Msa0096590:intron | 35.0% | |
| GAGAAAAAATGGCAAAGCTA+AGG | + | chr1_3:2271125-2271144 | Msa0096590:CDS | 35.0% | |
| ATTGTCTCCTCTATTACAAG+GGG | - | chr1_3:2271288-2271307 | None:intergenic | 35.0% | |
| CATTGTCTCCTCTATTACAA+GGG | - | chr1_3:2271289-2271308 | None:intergenic | 35.0% | |
| TCATTGTCTCCTCTATTACA+AGG | - | chr1_3:2271290-2271309 | None:intergenic | 35.0% | |
| ATGCTAACAACATCAGAAAG+TGG | - | chr1_3:2271357-2271376 | None:intergenic | 35.0% | |
| ACTTTCTGATGTTGTTAGCA+TGG | + | chr1_3:2271356-2271375 | Msa0096590:CDS | 35.0% | |
| CAAATCTCCTGAAGATATCA+TGG | - | chr1_3:2271436-2271455 | None:intergenic | 35.0% | |
| CATGATATCTTCAGGAGATT+TGG | + | chr1_3:2271434-2271453 | Msa0096590:CDS | 35.0% | |
| TGATATACTTGATCCTTCCA+AGG | + | chr1_3:2271473-2271492 | Msa0096590:CDS | 35.0% | |
| ! | GAAACATTGGGAGTATAAGC+AGG | + | chr1_3:2269670-2269689 | Msa0096590:CDS | 40.0% |
| TCGACAACCTTAGCAAACAA+AGG | + | chr1_3:2269723-2269742 | Msa0096590:CDS | 40.0% | |
| CGACAACCTTAGCAAACAAA+GGG | + | chr1_3:2269724-2269743 | Msa0096590:CDS | 40.0% | |
| GGATTTGAGGAAGAAAGCTA+CGG | + | chr1_3:2269791-2269810 | Msa0096590:CDS | 40.0% | |
| CATCCGGATTCAATATTGGA+TGG | + | chr1_3:2269824-2269843 | Msa0096590:CDS | 40.0% | |
| !! | TATTGGATGGTGTTGCAATC+AGG | + | chr1_3:2269837-2269856 | Msa0096590:CDS | 40.0% |
| !! | AACGATTGGAGGGAAGTATT+CGG | + | chr1_3:2269954-2269973 | Msa0096590:CDS | 40.0% |
| TGAAAGACAATCATCACCTG+TGG | + | chr1_3:2270024-2270043 | Msa0096590:CDS | 40.0% | |
| ! | TGCCATTTCAATGAATTCCC+AGG | + | chr1_3:2270299-2270318 | Msa0096590:intron | 40.0% |
| GTCCTGGGAATTCATTGAAA+TGG | - | chr1_3:2270304-2270323 | None:intergenic | 40.0% | |
| GAGGAGGTAATGATTCTTGA+TGG | + | chr1_3:2270372-2270391 | Msa0096590:intron | 40.0% | |
| GAGGTAATGATTCTTGATGG+AGG | + | chr1_3:2270375-2270394 | Msa0096590:intron | 40.0% | |
| CTAGGACCTCATAGGAAAAA+CGG | + | chr1_3:2270537-2270556 | Msa0096590:intron | 40.0% | |
| !! | CAACATCCGTTTTTCCTATG+AGG | - | chr1_3:2270546-2270565 | None:intergenic | 40.0% |
| ! | GTTGAAATTTTCACGGGATC+AGG | + | chr1_3:2270562-2270581 | Msa0096590:CDS | 40.0% |
| ! | AAGAGAGAAGTAATGGAGAC+AGG | + | chr1_3:2270607-2270626 | Msa0096590:CDS | 40.0% |
| AGACAGGAATACCTGGAAAA+AGG | + | chr1_3:2270623-2270642 | Msa0096590:CDS | 40.0% | |
| GACAGGAATACCTGGAAAAA+GGG | + | chr1_3:2270624-2270643 | Msa0096590:CDS | 40.0% | |
| TGGAGTAAACCATATGGGAA+TGG | + | chr1_3:2270732-2270751 | Msa0096590:intron | 40.0% | |
| ! | CGGTTATTTCCATTCCCATA+TGG | - | chr1_3:2270744-2270763 | None:intergenic | 40.0% |
| CAAAACCAACTTGTAAGGTC+TGG | + | chr1_3:2270843-2270862 | Msa0096590:intron | 40.0% | |
| TGACCTTAGTTGCCTGATAT+CGG | - | chr1_3:2270935-2270954 | None:intergenic | 40.0% | |
| AATTGCAGTTCAGAAAGCCA+AGG | + | chr1_3:2271153-2271172 | Msa0096590:CDS | 40.0% | |
| AGTTCAGAAAGCCAAGGAAA+CGG | + | chr1_3:2271159-2271178 | Msa0096590:CDS | 40.0% | |
| TTCTTGACCCCTTGTAATAG+AGG | + | chr1_3:2271278-2271297 | Msa0096590:intron | 40.0% | |
| AATGAGAGCAAAACAAGTGC+TGG | + | chr1_3:2271305-2271324 | Msa0096590:CDS | 40.0% | |
| TTGGATGCCATGATATCTTC+AGG | + | chr1_3:2271426-2271445 | Msa0096590:CDS | 40.0% | |
| ! | GAAACATTGGGAGTATAAGC+AGG | + | chr1_3:2269670-2269689 | Msa0096590:CDS | 40.0% |
| TCGACAACCTTAGCAAACAA+AGG | + | chr1_3:2269723-2269742 | Msa0096590:CDS | 40.0% | |
| CGACAACCTTAGCAAACAAA+GGG | + | chr1_3:2269724-2269743 | Msa0096590:CDS | 40.0% | |
| GGATTTGAGGAAGAAAGCTA+CGG | + | chr1_3:2269791-2269810 | Msa0096590:CDS | 40.0% | |
| CATCCGGATTCAATATTGGA+TGG | + | chr1_3:2269824-2269843 | Msa0096590:CDS | 40.0% | |
| !! | TATTGGATGGTGTTGCAATC+AGG | + | chr1_3:2269837-2269856 | Msa0096590:CDS | 40.0% |
| !! | AACGATTGGAGGGAAGTATT+CGG | + | chr1_3:2269954-2269973 | Msa0096590:CDS | 40.0% |
| TGAAAGACAATCATCACCTG+TGG | + | chr1_3:2270024-2270043 | Msa0096590:CDS | 40.0% | |
| ! | TGCCATTTCAATGAATTCCC+AGG | + | chr1_3:2270299-2270318 | Msa0096590:intron | 40.0% |
| GTCCTGGGAATTCATTGAAA+TGG | - | chr1_3:2270304-2270323 | None:intergenic | 40.0% | |
| GAGGAGGTAATGATTCTTGA+TGG | + | chr1_3:2270372-2270391 | Msa0096590:intron | 40.0% | |
| GAGGTAATGATTCTTGATGG+AGG | + | chr1_3:2270375-2270394 | Msa0096590:intron | 40.0% | |
| CTAGGACCTCATAGGAAAAA+CGG | + | chr1_3:2270537-2270556 | Msa0096590:intron | 40.0% | |
| !! | CAACATCCGTTTTTCCTATG+AGG | - | chr1_3:2270546-2270565 | None:intergenic | 40.0% |
| ! | GTTGAAATTTTCACGGGATC+AGG | + | chr1_3:2270562-2270581 | Msa0096590:CDS | 40.0% |
| ! | AAGAGAGAAGTAATGGAGAC+AGG | + | chr1_3:2270607-2270626 | Msa0096590:CDS | 40.0% |
| AGACAGGAATACCTGGAAAA+AGG | + | chr1_3:2270623-2270642 | Msa0096590:CDS | 40.0% | |
| GACAGGAATACCTGGAAAAA+GGG | + | chr1_3:2270624-2270643 | Msa0096590:CDS | 40.0% | |
| TGGAGTAAACCATATGGGAA+TGG | + | chr1_3:2270732-2270751 | Msa0096590:intron | 40.0% | |
| ! | CGGTTATTTCCATTCCCATA+TGG | - | chr1_3:2270744-2270763 | None:intergenic | 40.0% |
| CAAAACCAACTTGTAAGGTC+TGG | + | chr1_3:2270843-2270862 | Msa0096590:intron | 40.0% | |
| TGACCTTAGTTGCCTGATAT+CGG | - | chr1_3:2270935-2270954 | None:intergenic | 40.0% | |
| AATTGCAGTTCAGAAAGCCA+AGG | + | chr1_3:2271153-2271172 | Msa0096590:CDS | 40.0% | |
| AGTTCAGAAAGCCAAGGAAA+CGG | + | chr1_3:2271159-2271178 | Msa0096590:CDS | 40.0% | |
| TTCTTGACCCCTTGTAATAG+AGG | + | chr1_3:2271278-2271297 | Msa0096590:intron | 40.0% | |
| AATGAGAGCAAAACAAGTGC+TGG | + | chr1_3:2271305-2271324 | Msa0096590:CDS | 40.0% | |
| TTGGATGCCATGATATCTTC+AGG | + | chr1_3:2271426-2271445 | Msa0096590:CDS | 40.0% | |
| CAACCTTAGCAAACAAAGGG+AGG | + | chr1_3:2269727-2269746 | Msa0096590:CDS | 45.0% | |
| ! | CTTCCTCCCTTTGTTTGCTA+AGG | - | chr1_3:2269733-2269752 | None:intergenic | 45.0% |
| TTTGAGGAAGAAAGCTACGG+TGG | + | chr1_3:2269794-2269813 | Msa0096590:CDS | 45.0% | |
| CTACGGTGGAGAAAAACATC+CGG | + | chr1_3:2269808-2269827 | Msa0096590:CDS | 45.0% | |
| GAAACATCGGTCACGAGATA+TGG | + | chr1_3:2269928-2269947 | Msa0096590:CDS | 45.0% | |
| ATCTGTGACAGTTCTTCCAC+AGG | - | chr1_3:2270043-2270062 | None:intergenic | 45.0% | |
| ACCTGTTGTTATAGGCCATC+AGG | + | chr1_3:2270108-2270127 | Msa0096590:CDS | 45.0% | |
| ACCTGATGGCCTATAACAAC+AGG | - | chr1_3:2270112-2270131 | None:intergenic | 45.0% | |
| ACTCGTTGTAGTGTACCTGA+TGG | - | chr1_3:2270126-2270145 | None:intergenic | 45.0% | |
| ATAGCGCAACTCTTTGTCCT+GGG | - | chr1_3:2270319-2270338 | None:intergenic | 45.0% | |
| !! | TTGATGGAGGTCTTGTTGCA+AGG | + | chr1_3:2270388-2270407 | Msa0096590:intron | 45.0% |
| ! | GTAATGGAGACAGGAATACC+TGG | + | chr1_3:2270616-2270635 | Msa0096590:CDS | 45.0% |
| TGCAGAACCTGTGTTTAGCA+AGG | + | chr1_3:2270696-2270715 | Msa0096590:CDS | 45.0% | |
| AGCAAGGCAGGAGAAACAAT+TGG | + | chr1_3:2270712-2270731 | Msa0096590:CDS | 45.0% | |
| GGGAATGGAAATAACCGATC+AGG | + | chr1_3:2270747-2270766 | Msa0096590:intron | 45.0% | |
| AGGCCATATCTCATCCAATG+TGG | + | chr1_3:2270894-2270913 | Msa0096590:intron | 45.0% | |
| AGGCCACATTGGATGAGATA+TGG | - | chr1_3:2270900-2270919 | None:intergenic | 45.0% | |
| TCACACTTCATAGGCCACAT+TGG | - | chr1_3:2270911-2270930 | None:intergenic | 45.0% | |
| GATATCGGGTCACACTTCAT+AGG | - | chr1_3:2270920-2270939 | None:intergenic | 45.0% | |
| ATGAAGTGTGACCCGATATC+AGG | + | chr1_3:2270920-2270939 | Msa0096590:intron | 45.0% | |
| GACCTTAGTTGCCTGATATC+GGG | - | chr1_3:2270934-2270953 | None:intergenic | 45.0% | |
| TAGAGAACAAAGGCAGCTCT+TGG | + | chr1_3:2271407-2271426 | Msa0096590:CDS | 45.0% | |
| CAACCTTAGCAAACAAAGGG+AGG | + | chr1_3:2269727-2269746 | Msa0096590:CDS | 45.0% | |
| ! | CTTCCTCCCTTTGTTTGCTA+AGG | - | chr1_3:2269733-2269752 | None:intergenic | 45.0% |
| TTTGAGGAAGAAAGCTACGG+TGG | + | chr1_3:2269794-2269813 | Msa0096590:CDS | 45.0% | |
| CTACGGTGGAGAAAAACATC+CGG | + | chr1_3:2269808-2269827 | Msa0096590:CDS | 45.0% | |
| GAAACATCGGTCACGAGATA+TGG | + | chr1_3:2269928-2269947 | Msa0096590:CDS | 45.0% | |
| ATCTGTGACAGTTCTTCCAC+AGG | - | chr1_3:2270043-2270062 | None:intergenic | 45.0% | |
| ACCTGTTGTTATAGGCCATC+AGG | + | chr1_3:2270108-2270127 | Msa0096590:CDS | 45.0% | |
| ACCTGATGGCCTATAACAAC+AGG | - | chr1_3:2270112-2270131 | None:intergenic | 45.0% | |
| ACTCGTTGTAGTGTACCTGA+TGG | - | chr1_3:2270126-2270145 | None:intergenic | 45.0% | |
| ATAGCGCAACTCTTTGTCCT+GGG | - | chr1_3:2270319-2270338 | None:intergenic | 45.0% | |
| !! | TTGATGGAGGTCTTGTTGCA+AGG | + | chr1_3:2270388-2270407 | Msa0096590:intron | 45.0% |
| ! | GTAATGGAGACAGGAATACC+TGG | + | chr1_3:2270616-2270635 | Msa0096590:CDS | 45.0% |
| TGCAGAACCTGTGTTTAGCA+AGG | + | chr1_3:2270696-2270715 | Msa0096590:CDS | 45.0% | |
| AGCAAGGCAGGAGAAACAAT+TGG | + | chr1_3:2270712-2270731 | Msa0096590:CDS | 45.0% | |
| GGGAATGGAAATAACCGATC+AGG | + | chr1_3:2270747-2270766 | Msa0096590:intron | 45.0% | |
| AGGCCATATCTCATCCAATG+TGG | + | chr1_3:2270894-2270913 | Msa0096590:intron | 45.0% | |
| AGGCCACATTGGATGAGATA+TGG | - | chr1_3:2270900-2270919 | None:intergenic | 45.0% | |
| TCACACTTCATAGGCCACAT+TGG | - | chr1_3:2270911-2270930 | None:intergenic | 45.0% | |
| GATATCGGGTCACACTTCAT+AGG | - | chr1_3:2270920-2270939 | None:intergenic | 45.0% | |
| ATGAAGTGTGACCCGATATC+AGG | + | chr1_3:2270920-2270939 | Msa0096590:intron | 45.0% | |
| GACCTTAGTTGCCTGATATC+GGG | - | chr1_3:2270934-2270953 | None:intergenic | 45.0% | |
| TAGAGAACAAAGGCAGCTCT+TGG | + | chr1_3:2271407-2271426 | Msa0096590:CDS | 45.0% | |
| TGTCGAGCTCTTCTCGAAGA+AGG | - | chr1_3:2269709-2269728 | None:intergenic | 50.0% | |
| GATAGCGCAACTCTTTGTCC+TGG | - | chr1_3:2270320-2270339 | None:intergenic | 50.0% | |
| TTTCACGGGATCAGGTGTGA+AGG | + | chr1_3:2270570-2270589 | Msa0096590:CDS | 50.0% | |
| GAACCTGTGTTTAGCAAGGC+AGG | + | chr1_3:2270700-2270719 | Msa0096590:CDS | 50.0% | |
| TCTCCTGCCTTGCTAAACAC+AGG | - | chr1_3:2270706-2270725 | None:intergenic | 50.0% | |
| GCAACCCAGACCTTACAAGT+TGG | - | chr1_3:2270851-2270870 | None:intergenic | 50.0% | |
| GACCCGATATCAGGCAACTA+AGG | + | chr1_3:2270929-2270948 | Msa0096590:intron | 50.0% | |
| ACGCTTCAGATGTCTAGTCC+TGG | + | chr1_3:2270954-2270973 | Msa0096590:intron | 50.0% | |
| CGCTTCAGATGTCTAGTCCT+GGG | + | chr1_3:2270955-2270974 | Msa0096590:intron | 50.0% | |
| GCTTCAGATGTCTAGTCCTG+GGG | + | chr1_3:2270956-2270975 | Msa0096590:intron | 50.0% | |
| CTTCAGATGTCTAGTCCTGG+GGG | + | chr1_3:2270957-2270976 | Msa0096590:intron | 50.0% | |
| ATGTCTAGTCCTGGGGGTAA+GGG | + | chr1_3:2270963-2270982 | Msa0096590:intron | 50.0% | |
| TGATCCTTCCAAGGCTGAGT+CGG | + | chr1_3:2271482-2271501 | Msa0096590:CDS | 50.0% | |
| TGTCGAGCTCTTCTCGAAGA+AGG | - | chr1_3:2269709-2269728 | None:intergenic | 50.0% | |
| GATAGCGCAACTCTTTGTCC+TGG | - | chr1_3:2270320-2270339 | None:intergenic | 50.0% | |
| TTTCACGGGATCAGGTGTGA+AGG | + | chr1_3:2270570-2270589 | Msa0096590:CDS | 50.0% | |
| GAACCTGTGTTTAGCAAGGC+AGG | + | chr1_3:2270700-2270719 | Msa0096590:CDS | 50.0% | |
| TCTCCTGCCTTGCTAAACAC+AGG | - | chr1_3:2270706-2270725 | None:intergenic | 50.0% | |
| GCAACCCAGACCTTACAAGT+TGG | - | chr1_3:2270851-2270870 | None:intergenic | 50.0% | |
| GACCCGATATCAGGCAACTA+AGG | + | chr1_3:2270929-2270948 | Msa0096590:intron | 50.0% | |
| ACGCTTCAGATGTCTAGTCC+TGG | + | chr1_3:2270954-2270973 | Msa0096590:intron | 50.0% | |
| CGCTTCAGATGTCTAGTCCT+GGG | + | chr1_3:2270955-2270974 | Msa0096590:intron | 50.0% | |
| GCTTCAGATGTCTAGTCCTG+GGG | + | chr1_3:2270956-2270975 | Msa0096590:intron | 50.0% | |
| CTTCAGATGTCTAGTCCTGG+GGG | + | chr1_3:2270957-2270976 | Msa0096590:intron | 50.0% | |
| ATGTCTAGTCCTGGGGGTAA+GGG | + | chr1_3:2270963-2270982 | Msa0096590:intron | 50.0% | |
| TGATCCTTCCAAGGCTGAGT+CGG | + | chr1_3:2271482-2271501 | Msa0096590:CDS | 50.0% | |
| GATGTCTAGTCCTGGGGGTA+AGG | + | chr1_3:2270962-2270981 | Msa0096590:intron | 55.0% | |
| AACAAATCGCCCTTACCCCC+AGG | - | chr1_3:2270975-2270994 | None:intergenic | 55.0% | |
| GATCCTTCCAAGGCTGAGTC+GGG | + | chr1_3:2271483-2271502 | Msa0096590:CDS | 55.0% | |
| TAACCCGACTCAGCCTTGGA+AGG | - | chr1_3:2271489-2271508 | None:intergenic | 55.0% | |
| GATGTCTAGTCCTGGGGGTA+AGG | + | chr1_3:2270962-2270981 | Msa0096590:intron | 55.0% | |
| AACAAATCGCCCTTACCCCC+AGG | - | chr1_3:2270975-2270994 | None:intergenic | 55.0% | |
| GATCCTTCCAAGGCTGAGTC+GGG | + | chr1_3:2271483-2271502 | Msa0096590:CDS | 55.0% | |
| TAACCCGACTCAGCCTTGGA+AGG | - | chr1_3:2271489-2271508 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 2269548 | 2271509 | 2269548 | ID=Msa0096590;Name=Msa0096590 |
| chr1_3 | mRNA | 2269548 | 2271509 | 2269548 | ID=Msa0096590-mRNA-1;Parent=Msa0096590;Name=Msa0096590-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|5|0|379 |
| chr1_3 | exon | 2269548 | 2270129 | 2269548 | ID=Msa0096590-mRNA-1:exon:511;Parent=Msa0096590-mRNA-1 |
| chr1_3 | exon | 2270321 | 2270377 | 2270321 | ID=Msa0096590-mRNA-1:exon:512;Parent=Msa0096590-mRNA-1 |
| chr1_3 | exon | 2270541 | 2270735 | 2270541 | ID=Msa0096590-mRNA-1:exon:513;Parent=Msa0096590-mRNA-1 |
| chr1_3 | exon | 2271115 | 2271208 | 2271115 | ID=Msa0096590-mRNA-1:exon:514;Parent=Msa0096590-mRNA-1 |
| chr1_3 | exon | 2271298 | 2271509 | 2271298 | ID=Msa0096590-mRNA-1:exon:515;Parent=Msa0096590-mRNA-1 |
| chr1_3 | CDS | 2269548 | 2270129 | 2269548 | ID=Msa0096590-mRNA-1:cds;Parent=Msa0096590-mRNA-1 |
| chr1_3 | CDS | 2270321 | 2270377 | 2270321 | ID=Msa0096590-mRNA-1:cds;Parent=Msa0096590-mRNA-1 |
| chr1_3 | CDS | 2270541 | 2270735 | 2270541 | ID=Msa0096590-mRNA-1:cds;Parent=Msa0096590-mRNA-1 |
| chr1_3 | CDS | 2271115 | 2271208 | 2271115 | ID=Msa0096590-mRNA-1:cds;Parent=Msa0096590-mRNA-1 |
| chr1_3 | CDS | 2271298 | 2271509 | 2271298 | ID=Msa0096590-mRNA-1:cds;Parent=Msa0096590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
