AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0148700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0148700 MtrunA17_Chr1g0150531 88.718 390 32 2 1 379 1 389 0.0 693
Msa0148700 MtrunA17_Chr1g0150511 81.203 399 54 3 2 379 43 441 0.0 635
Msa0148700 MtrunA17_Chr3g0136601 74.874 398 79 4 2 379 39 435 0.0 586
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0148700 AT5G10720.1 61.364 396 129 5 2 379 42 431 1.43e-152 454
Msa0148700 AT5G10680.2 46.212 132 53 4 1 122 37 160 1.44e-23 98.6
Msa0148700 AT5G10680.1 46.212 132 53 4 1 122 37 160 1.44e-23 98.6

Find 53 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAATGCACCTGTTGTTAT+TGG 0.158249 1_4:+9087171 Msa0148700:CDS
CTTTGAAAATCAGCTATAAT+TGG 0.203037 1_4:-9086661 None:intergenic
AATAAAACTATTTACATTAC+AGG 0.248651 1_4:+9088260 Msa0148700:CDS
CATGATATCTTCAGGAGATT+TGG 0.274046 1_4:+9088507 Msa0148700:CDS
AGAAAGGAATACCTGCAAAA+AGG 0.324513 1_4:+9087694 Msa0148700:CDS
AAAACATCCGGATTCAATAT+TGG 0.341750 1_4:+9086891 Msa0148700:CDS
AGAAGAAGTAACAATCTTAG+AGG 0.346203 1_4:+9086636 Msa0148700:CDS
GAAACATCGGTCACGAGATA+TGG 0.358103 1_4:+9086999 Msa0148700:CDS
AGTATGATGATGTTGTTTAC+TGG 0.359184 1_4:+9086977 Msa0148700:CDS
TTTATTAAGTTCTGTTTCCT+TGG 0.367714 1_4:-9088243 None:intergenic
TATTGGATGGTGTTGCAATA+AGG 0.369745 1_4:+9086908 Msa0148700:CDS
CTGCTTATACTCCCAATGTT+TGG 0.389829 1_4:-9086740 None:intergenic
AAGAGAGAAGTAATGGAGAA+AGG 0.411442 1_4:+9087678 Msa0148700:CDS
CTTCCTCCCTTTGTTTGCTA+AGG 0.415873 1_4:-9086801 None:intergenic
ACCTGTTGTTATTGGCCATC+AGG 0.429581 1_4:+9087179 Msa0148700:CDS
AACGATTGGAGGGAAGTATT+CGG 0.430328 1_4:+9087025 Msa0148700:CDS
ATAAATTTCCAGGACCTCAT+AGG 0.439968 1_4:+9087600 Msa0148700:intron
GAGATACTTAAAGACAATAA+TGG 0.444436 1_4:+9086841 Msa0148700:CDS
TTGGATGCCATGATATCTTC+AGG 0.452888 1_4:+9088499 Msa0148700:CDS
TAGAGAACAAAGACAGCTCT+TGG 0.457376 1_4:+9088480 Msa0148700:CDS
AGCTAATCTCACCAAACATT+GGG 0.459533 1_4:+9086729 Msa0148700:CDS
GATCCTTCCAAGGCTGAGTC+GGG 0.469731 1_4:+9088556 Msa0148700:CDS
CAAATCTCCTGAAGATATCA+TGG 0.470277 1_4:-9088506 None:intergenic
AGCAAGGCAGGAGAAACAAT+TGG 0.472538 1_4:+9087783 Msa0148700:CDS
TTTCTAACCCGACTCAGCCT+TGG 0.478360 1_4:-9088563 None:intergenic
GAACCTGTGTTTAGCAAGGC+AGG 0.487467 1_4:+9087771 Msa0148700:CDS
TGATCCTTCCAAGGCTGAGT+CGG 0.495766 1_4:+9088555 Msa0148700:CDS
ACCTGATGGCCAATAACAAC+AGG 0.495809 1_4:-9087180 None:intergenic
ACACCATCCAATATTGAATC+CGG 0.501464 1_4:-9086898 None:intergenic
AAACAAAAGAATTGAAATTG+AGG 0.507015 1_4:+9086951 Msa0148700:CDS
TGTCGAGCTCTTCTCGAAGA+AGG 0.522863 1_4:-9086777 None:intergenic
AATGAGAGCAAAACAAGTGC+TGG 0.527084 1_4:+9088378 Msa0148700:CDS
ACTTTCTGATGTTGTTAGCA+TGG 0.533367 1_4:+9088429 Msa0148700:CDS
CGACAACCTTAGCAAACAAA+GGG 0.535427 1_4:+9086795 Msa0148700:CDS
TAGCTAATCTCACCAAACAT+TGG 0.536290 1_4:+9086728 Msa0148700:CDS
TAAAGACAATAATGGATTCG+AGG 0.541318 1_4:+9086849 Msa0148700:CDS
TCTCCTGCCTTGCTAAACAC+AGG 0.549002 1_4:-9087774 None:intergenic
CATCCGGATTCAATATTGGA+TGG 0.554723 1_4:+9086895 Msa0148700:CDS
TGATATACTTGATCCTTCCA+AGG 0.562404 1_4:+9088546 Msa0148700:CDS
ATCTGTGACAGTTCTTCCAC+AGG 0.563140 1_4:-9087111 None:intergenic
CAAACATTGGGAGTATAAGC+AGG 0.575100 1_4:+9086741 Msa0148700:CDS
ATGCTAACAACATCAGAAAG+TGG 0.579722 1_4:-9088427 None:intergenic
TAACCCGACTCAGCCTTGGA+AGG 0.583784 1_4:-9088559 None:intergenic
TCGACAACCTTAGCAAACAA+AGG 0.586507 1_4:+9086794 Msa0148700:CDS
TGCAGAACCTGTGTTTAGCA+AGG 0.605158 1_4:+9087767 Msa0148700:CDS
TTTCACGGGATCAGGTGCGA+AGG 0.618292 1_4:+9087641 Msa0148700:CDS
ATGTTGTTTACTGGAAACAT+CGG 0.642416 1_4:+9086986 Msa0148700:CDS
CAACCTTAGCAAACAAAGGG+AGG 0.643459 1_4:+9086798 Msa0148700:CDS
TGAAAGACAATCATCACCTG+TGG 0.646063 1_4:+9087095 Msa0148700:CDS
AATTGCAGTTCAGAAAGCCA+AGG 0.648370 1_4:+9088226 Msa0148700:CDS
GTAAACAACATCATCATACT+CGG 0.655371 1_4:-9086974 None:intergenic
GGATTCGAGGAAGAAAGCTA+CGG 0.661034 1_4:+9086862 Msa0148700:CDS
TTCGAGGAAGAAAGCTACGG+TGG 0.662476 1_4:+9086865 Msa0148700:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTAAATTTGTTTATAAGT+GGG - chr1_4:9087946-9087965 None:intergenic 15.0%
!! AATAAAACTATTTACATTAC+AGG + chr1_4:9088260-9088279 Msa0148700:CDS 15.0%
!! GAAATTCATAAATCAAAATT+TGG - chr1_4:9088300-9088319 None:intergenic 15.0%
!!! TTGTAAATTTGTTTATAAGT+GGG - chr1_4:9087946-9087965 None:intergenic 15.0%
!! AATAAAACTATTTACATTAC+AGG + chr1_4:9088260-9088279 Msa0148700:CDS 15.0%
!! GAAATTCATAAATCAAAATT+TGG - chr1_4:9088300-9088319 None:intergenic 15.0%
!! AAACAAAAGAATTGAAATTG+AGG + chr1_4:9086951-9086970 Msa0148700:CDS 20.0%
!!! ATTTTCTTAAAATTTGGGTT+AGG + chr1_4:9087876-9087895 Msa0148700:intron 20.0%
!!! TGTAAATTTGTTTATAAGTG+GGG - chr1_4:9087945-9087964 None:intergenic 20.0%
!!! CTTGTAAATTTGTTTATAAG+TGG - chr1_4:9087947-9087966 None:intergenic 20.0%
!! AAACAAAAGAATTGAAATTG+AGG + chr1_4:9086951-9086970 Msa0148700:CDS 20.0%
!!! ATTTTCTTAAAATTTGGGTT+AGG + chr1_4:9087876-9087895 Msa0148700:intron 20.0%
!!! TGTAAATTTGTTTATAAGTG+GGG - chr1_4:9087945-9087964 None:intergenic 20.0%
!!! CTTGTAAATTTGTTTATAAG+TGG - chr1_4:9087947-9087966 None:intergenic 20.0%
!! CTTTGAAAATCAGCTATAAT+TGG - chr1_4:9086664-9086683 None:intergenic 25.0%
! GAGATACTTAAAGACAATAA+TGG + chr1_4:9086841-9086860 Msa0148700:CDS 25.0%
!!! AGATTTTAAGAGAGAAGTAA+TGG + chr1_4:9087671-9087690 Msa0148700:CDS 25.0%
!! ACCTGCATTTTCTTAAAATT+TGG + chr1_4:9087870-9087889 Msa0148700:intron 25.0%
!! CCTGCATTTTCTTAAAATTT+GGG + chr1_4:9087871-9087890 Msa0148700:intron 25.0%
!! GTAAATTTGTTTATAAGTGG+GGG - chr1_4:9087944-9087963 None:intergenic 25.0%
! ATAGGATATGTGTTTATAAG+TGG + chr1_4:9088081-9088100 Msa0148700:intron 25.0%
! TAGGATATGTGTTTATAAGT+GGG + chr1_4:9088082-9088101 Msa0148700:intron 25.0%
!!! GATTGAAAGGTATTAGAATT+TGG - chr1_4:9088119-9088138 None:intergenic 25.0%
! TTTATTAAGTTCTGTTTCCT+TGG - chr1_4:9088246-9088265 None:intergenic 25.0%
!! CTTTGAAAATCAGCTATAAT+TGG - chr1_4:9086664-9086683 None:intergenic 25.0%
! GAGATACTTAAAGACAATAA+TGG + chr1_4:9086841-9086860 Msa0148700:CDS 25.0%
!!! AGATTTTAAGAGAGAAGTAA+TGG + chr1_4:9087671-9087690 Msa0148700:CDS 25.0%
!! ACCTGCATTTTCTTAAAATT+TGG + chr1_4:9087870-9087889 Msa0148700:intron 25.0%
!! CCTGCATTTTCTTAAAATTT+GGG + chr1_4:9087871-9087890 Msa0148700:intron 25.0%
!! GTAAATTTGTTTATAAGTGG+GGG - chr1_4:9087944-9087963 None:intergenic 25.0%
! ATAGGATATGTGTTTATAAG+TGG + chr1_4:9088081-9088100 Msa0148700:intron 25.0%
! TAGGATATGTGTTTATAAGT+GGG + chr1_4:9088082-9088101 Msa0148700:intron 25.0%
!!! GATTGAAAGGTATTAGAATT+TGG - chr1_4:9088119-9088138 None:intergenic 25.0%
! TTTATTAAGTTCTGTTTCCT+TGG - chr1_4:9088246-9088265 None:intergenic 25.0%
AGAAGAAGTAACAATCTTAG+AGG + chr1_4:9086636-9086655 Msa0148700:CDS 30.0%
!! AGCTGATTTTCAAAGAATTG+TGG + chr1_4:9086669-9086688 Msa0148700:CDS 30.0%
!! TAAAGACAATAATGGATTCG+AGG + chr1_4:9086849-9086868 Msa0148700:CDS 30.0%
AAAACATCCGGATTCAATAT+TGG + chr1_4:9086891-9086910 Msa0148700:CDS 30.0%
GTAAACAACATCATCATACT+CGG - chr1_4:9086977-9086996 None:intergenic 30.0%
! AGTATGATGATGTTGTTTAC+TGG + chr1_4:9086977-9086996 Msa0148700:CDS 30.0%
! ATGTTGTTTACTGGAAACAT+CGG + chr1_4:9086986-9087005 Msa0148700:CDS 30.0%
! CCTCTTTTAAACTTGGAAAA+TGG - chr1_4:9087427-9087446 None:intergenic 30.0%
! CCATTTTCCAAGTTTAAAAG+AGG + chr1_4:9087424-9087443 Msa0148700:CDS 30.0%
! TTTTCCAAGTTTAAAAGAGG+AGG + chr1_4:9087427-9087446 Msa0148700:CDS 30.0%
! ATTACCTCCTCTTTTAAACT+TGG - chr1_4:9087434-9087453 None:intergenic 30.0%
TTACTTGCACATAAATTTCC+AGG + chr1_4:9087590-9087609 Msa0148700:intron 30.0%
! AACGGATGTTGAAATTTTCA+CGG + chr1_4:9087626-9087645 Msa0148700:CDS 30.0%
!! AAAGTTATTTCCCTTTTTGC+AGG - chr1_4:9087708-9087727 None:intergenic 30.0%
AACAATTGGAGTAAACCATA+TGG + chr1_4:9087797-9087816 Msa0148700:intron 30.0%
ACAATTGGAGTAAACCATAT+GGG + chr1_4:9087798-9087817 Msa0148700:intron 30.0%
! AGTAACAGTTTTTACCTGAT+CGG - chr1_4:9087835-9087854 None:intergenic 30.0%
! TCAGGTAAAAACTGTTACTT+TGG + chr1_4:9087836-9087855 Msa0148700:intron 30.0%
!! CCCAAATTTTAAGAAAATGC+AGG - chr1_4:9087874-9087893 None:intergenic 30.0%
! ATTTGTTAGTAGTCTCACAT+TGG + chr1_4:9088058-9088077 Msa0148700:intron 30.0%
AGGATATGTGTTTATAAGTG+GGG + chr1_4:9088083-9088102 Msa0148700:intron 30.0%
TGCACAAAAACAAGATTGAA+AGG - chr1_4:9088132-9088151 None:intergenic 30.0%
TAATTTCGACAAACAATTGC+AGG + chr1_4:9088166-9088185 Msa0148700:intron 30.0%
GGTGAGAAAAAGAGAAAAAA+TGG + chr1_4:9088187-9088206 Msa0148700:intron 30.0%
AGAAAAAATGGCAAAGCTAA+GGG + chr1_4:9088199-9088218 Msa0148700:CDS 30.0%
AGAAGAAGTAACAATCTTAG+AGG + chr1_4:9086636-9086655 Msa0148700:CDS 30.0%
!! AGCTGATTTTCAAAGAATTG+TGG + chr1_4:9086669-9086688 Msa0148700:CDS 30.0%
!! TAAAGACAATAATGGATTCG+AGG + chr1_4:9086849-9086868 Msa0148700:CDS 30.0%
AAAACATCCGGATTCAATAT+TGG + chr1_4:9086891-9086910 Msa0148700:CDS 30.0%
GTAAACAACATCATCATACT+CGG - chr1_4:9086977-9086996 None:intergenic 30.0%
! AGTATGATGATGTTGTTTAC+TGG + chr1_4:9086977-9086996 Msa0148700:CDS 30.0%
! ATGTTGTTTACTGGAAACAT+CGG + chr1_4:9086986-9087005 Msa0148700:CDS 30.0%
! CCTCTTTTAAACTTGGAAAA+TGG - chr1_4:9087427-9087446 None:intergenic 30.0%
! CCATTTTCCAAGTTTAAAAG+AGG + chr1_4:9087424-9087443 Msa0148700:CDS 30.0%
! TTTTCCAAGTTTAAAAGAGG+AGG + chr1_4:9087427-9087446 Msa0148700:CDS 30.0%
! ATTACCTCCTCTTTTAAACT+TGG - chr1_4:9087434-9087453 None:intergenic 30.0%
TTACTTGCACATAAATTTCC+AGG + chr1_4:9087590-9087609 Msa0148700:intron 30.0%
! AACGGATGTTGAAATTTTCA+CGG + chr1_4:9087626-9087645 Msa0148700:CDS 30.0%
!! AAAGTTATTTCCCTTTTTGC+AGG - chr1_4:9087708-9087727 None:intergenic 30.0%
AACAATTGGAGTAAACCATA+TGG + chr1_4:9087797-9087816 Msa0148700:intron 30.0%
ACAATTGGAGTAAACCATAT+GGG + chr1_4:9087798-9087817 Msa0148700:intron 30.0%
! AGTAACAGTTTTTACCTGAT+CGG - chr1_4:9087835-9087854 None:intergenic 30.0%
! TCAGGTAAAAACTGTTACTT+TGG + chr1_4:9087836-9087855 Msa0148700:intron 30.0%
!! CCCAAATTTTAAGAAAATGC+AGG - chr1_4:9087874-9087893 None:intergenic 30.0%
! ATTTGTTAGTAGTCTCACAT+TGG + chr1_4:9088058-9088077 Msa0148700:intron 30.0%
AGGATATGTGTTTATAAGTG+GGG + chr1_4:9088083-9088102 Msa0148700:intron 30.0%
TGCACAAAAACAAGATTGAA+AGG - chr1_4:9088132-9088151 None:intergenic 30.0%
TAATTTCGACAAACAATTGC+AGG + chr1_4:9088166-9088185 Msa0148700:intron 30.0%
GGTGAGAAAAAGAGAAAAAA+TGG + chr1_4:9088187-9088206 Msa0148700:intron 30.0%
AGAAAAAATGGCAAAGCTAA+GGG + chr1_4:9088199-9088218 Msa0148700:CDS 30.0%
TAGCTAATCTCACCAAACAT+TGG + chr1_4:9086728-9086747 Msa0148700:CDS 35.0%
AGCTAATCTCACCAAACATT+GGG + chr1_4:9086729-9086748 Msa0148700:CDS 35.0%
ACACCATCCAATATTGAATC+CGG - chr1_4:9086901-9086920 None:intergenic 35.0%
!! TATTGGATGGTGTTGCAATA+AGG + chr1_4:9086908-9086927 Msa0148700:CDS 35.0%
ACGAGATATGGAAAAACGAT+TGG + chr1_4:9087011-9087030 Msa0148700:CDS 35.0%
AGATATGGAAAAACGATTGG+AGG + chr1_4:9087014-9087033 Msa0148700:CDS 35.0%
GATATGGAAAAACGATTGGA+GGG + chr1_4:9087015-9087034 Msa0148700:CDS 35.0%
CAAAATGCACCTGTTGTTAT+TGG + chr1_4:9087171-9087190 Msa0148700:CDS 35.0%
ATAAATTTCCAGGACCTCAT+AGG + chr1_4:9087600-9087619 Msa0148700:intron 35.0%
! ACGGATGTTGAAATTTTCAC+GGG + chr1_4:9087627-9087646 Msa0148700:CDS 35.0%
! AAGAGAGAAGTAATGGAGAA+AGG + chr1_4:9087678-9087697 Msa0148700:CDS 35.0%
AGAAAGGAATACCTGCAAAA+AGG + chr1_4:9087694-9087713 Msa0148700:CDS 35.0%
GAAAGGAATACCTGCAAAAA+GGG + chr1_4:9087695-9087714 Msa0148700:CDS 35.0%
!!! ACTTTTGAGACAGAACTGTT+TGG + chr1_4:9087723-9087742 Msa0148700:CDS 35.0%
!!! CCTTACAAGTTGGTTTTGTA+AGG - chr1_4:9087912-9087931 None:intergenic 35.0%
CCTTACAAAACCAACTTGTA+AGG + chr1_4:9087909-9087928 Msa0148700:intron 35.0%
AAAACCAACTTGTAAGGTCT+GGG + chr1_4:9087915-9087934 Msa0148700:intron 35.0%
TTAGTAGTCTCACATTGGAT+AGG + chr1_4:9088063-9088082 Msa0148700:intron 35.0%
GGATATGTGTTTATAAGTGG+GGG + chr1_4:9088084-9088103 Msa0148700:intron 35.0%
GAGAAAAAATGGCAAAGCTA+AGG + chr1_4:9088198-9088217 Msa0148700:CDS 35.0%
ATTGTCTCCTCTATTACAAG+GGG - chr1_4:9088361-9088380 None:intergenic 35.0%
CATTGTCTCCTCTATTACAA+GGG - chr1_4:9088362-9088381 None:intergenic 35.0%
TCATTGTCTCCTCTATTACA+AGG - chr1_4:9088363-9088382 None:intergenic 35.0%
ATGCTAACAACATCAGAAAG+TGG - chr1_4:9088430-9088449 None:intergenic 35.0%
ACTTTCTGATGTTGTTAGCA+TGG + chr1_4:9088429-9088448 Msa0148700:CDS 35.0%
CAAATCTCCTGAAGATATCA+TGG - chr1_4:9088509-9088528 None:intergenic 35.0%
CATGATATCTTCAGGAGATT+TGG + chr1_4:9088507-9088526 Msa0148700:CDS 35.0%
TGATATACTTGATCCTTCCA+AGG + chr1_4:9088546-9088565 Msa0148700:CDS 35.0%
TAGCTAATCTCACCAAACAT+TGG + chr1_4:9086728-9086747 Msa0148700:CDS 35.0%
AGCTAATCTCACCAAACATT+GGG + chr1_4:9086729-9086748 Msa0148700:CDS 35.0%
ACACCATCCAATATTGAATC+CGG - chr1_4:9086901-9086920 None:intergenic 35.0%
!! TATTGGATGGTGTTGCAATA+AGG + chr1_4:9086908-9086927 Msa0148700:CDS 35.0%
ACGAGATATGGAAAAACGAT+TGG + chr1_4:9087011-9087030 Msa0148700:CDS 35.0%
AGATATGGAAAAACGATTGG+AGG + chr1_4:9087014-9087033 Msa0148700:CDS 35.0%
GATATGGAAAAACGATTGGA+GGG + chr1_4:9087015-9087034 Msa0148700:CDS 35.0%
CAAAATGCACCTGTTGTTAT+TGG + chr1_4:9087171-9087190 Msa0148700:CDS 35.0%
ATAAATTTCCAGGACCTCAT+AGG + chr1_4:9087600-9087619 Msa0148700:intron 35.0%
! ACGGATGTTGAAATTTTCAC+GGG + chr1_4:9087627-9087646 Msa0148700:CDS 35.0%
! AAGAGAGAAGTAATGGAGAA+AGG + chr1_4:9087678-9087697 Msa0148700:CDS 35.0%
AGAAAGGAATACCTGCAAAA+AGG + chr1_4:9087694-9087713 Msa0148700:CDS 35.0%
GAAAGGAATACCTGCAAAAA+GGG + chr1_4:9087695-9087714 Msa0148700:CDS 35.0%
!!! ACTTTTGAGACAGAACTGTT+TGG + chr1_4:9087723-9087742 Msa0148700:CDS 35.0%
!!! CCTTACAAGTTGGTTTTGTA+AGG - chr1_4:9087912-9087931 None:intergenic 35.0%
CCTTACAAAACCAACTTGTA+AGG + chr1_4:9087909-9087928 Msa0148700:intron 35.0%
AAAACCAACTTGTAAGGTCT+GGG + chr1_4:9087915-9087934 Msa0148700:intron 35.0%
TTAGTAGTCTCACATTGGAT+AGG + chr1_4:9088063-9088082 Msa0148700:intron 35.0%
GGATATGTGTTTATAAGTGG+GGG + chr1_4:9088084-9088103 Msa0148700:intron 35.0%
GAGAAAAAATGGCAAAGCTA+AGG + chr1_4:9088198-9088217 Msa0148700:CDS 35.0%
ATTGTCTCCTCTATTACAAG+GGG - chr1_4:9088361-9088380 None:intergenic 35.0%
CATTGTCTCCTCTATTACAA+GGG - chr1_4:9088362-9088381 None:intergenic 35.0%
TCATTGTCTCCTCTATTACA+AGG - chr1_4:9088363-9088382 None:intergenic 35.0%
ATGCTAACAACATCAGAAAG+TGG - chr1_4:9088430-9088449 None:intergenic 35.0%
ACTTTCTGATGTTGTTAGCA+TGG + chr1_4:9088429-9088448 Msa0148700:CDS 35.0%
CAAATCTCCTGAAGATATCA+TGG - chr1_4:9088509-9088528 None:intergenic 35.0%
CATGATATCTTCAGGAGATT+TGG + chr1_4:9088507-9088526 Msa0148700:CDS 35.0%
TGATATACTTGATCCTTCCA+AGG + chr1_4:9088546-9088565 Msa0148700:CDS 35.0%
CTGCTTATACTCCCAATGTT+TGG - chr1_4:9086743-9086762 None:intergenic 40.0%
! CAAACATTGGGAGTATAAGC+AGG + chr1_4:9086741-9086760 Msa0148700:CDS 40.0%
TCGACAACCTTAGCAAACAA+AGG + chr1_4:9086794-9086813 Msa0148700:CDS 40.0%
CGACAACCTTAGCAAACAAA+GGG + chr1_4:9086795-9086814 Msa0148700:CDS 40.0%
CATCCGGATTCAATATTGGA+TGG + chr1_4:9086895-9086914 Msa0148700:CDS 40.0%
!! AACGATTGGAGGGAAGTATT+CGG + chr1_4:9087025-9087044 Msa0148700:CDS 40.0%
TGAAAGACAATCATCACCTG+TGG + chr1_4:9087095-9087114 Msa0148700:CDS 40.0%
! TGCCATTTCAATGAATTCCC+AGG + chr1_4:9087370-9087389 Msa0148700:intron 40.0%
GTCCTGGGAATTCATTGAAA+TGG - chr1_4:9087375-9087394 None:intergenic 40.0%
GAGGAGGTAATGATTCTTGT+TGG + chr1_4:9087443-9087462 Msa0148700:intron 40.0%
GAGGTAATGATTCTTGTTGG+AGG + chr1_4:9087446-9087465 Msa0148700:intron 40.0%
!! CAACATCCGTTTTTCCTATG+AGG - chr1_4:9087617-9087636 None:intergenic 40.0%
! GTTGAAATTTTCACGGGATC+AGG + chr1_4:9087633-9087652 Msa0148700:CDS 40.0%
TGGAGTAAACCATATGGGAA+TGG + chr1_4:9087803-9087822 Msa0148700:intron 40.0%
! CGGTTATTTCCATTCCCATA+TGG - chr1_4:9087815-9087834 None:intergenic 40.0%
!!! TGGTTTTGTAAGGATGAGTC+AGG - chr1_4:9087902-9087921 None:intergenic 40.0%
CAAAACCAACTTGTAAGGTC+TGG + chr1_4:9087914-9087933 Msa0148700:intron 40.0%
AAGCCATATCTCATCCAATG+TGG + chr1_4:9087964-9087983 Msa0148700:intron 40.0%
TGACCTTAGTTGCCTGATAT+CGG - chr1_4:9088005-9088024 None:intergenic 40.0%
AATTGCAGTTCAGAAAGCCA+AGG + chr1_4:9088226-9088245 Msa0148700:CDS 40.0%
TTCTTGACCCCTTGTAATAG+AGG + chr1_4:9088351-9088370 Msa0148700:intron 40.0%
AATGAGAGCAAAACAAGTGC+TGG + chr1_4:9088378-9088397 Msa0148700:CDS 40.0%
TAGAGAACAAAGACAGCTCT+TGG + chr1_4:9088480-9088499 Msa0148700:CDS 40.0%
TTGGATGCCATGATATCTTC+AGG + chr1_4:9088499-9088518 Msa0148700:CDS 40.0%
CTGCTTATACTCCCAATGTT+TGG - chr1_4:9086743-9086762 None:intergenic 40.0%
! CAAACATTGGGAGTATAAGC+AGG + chr1_4:9086741-9086760 Msa0148700:CDS 40.0%
TCGACAACCTTAGCAAACAA+AGG + chr1_4:9086794-9086813 Msa0148700:CDS 40.0%
CGACAACCTTAGCAAACAAA+GGG + chr1_4:9086795-9086814 Msa0148700:CDS 40.0%
CATCCGGATTCAATATTGGA+TGG + chr1_4:9086895-9086914 Msa0148700:CDS 40.0%
!! AACGATTGGAGGGAAGTATT+CGG + chr1_4:9087025-9087044 Msa0148700:CDS 40.0%
TGAAAGACAATCATCACCTG+TGG + chr1_4:9087095-9087114 Msa0148700:CDS 40.0%
! TGCCATTTCAATGAATTCCC+AGG + chr1_4:9087370-9087389 Msa0148700:intron 40.0%
GTCCTGGGAATTCATTGAAA+TGG - chr1_4:9087375-9087394 None:intergenic 40.0%
GAGGAGGTAATGATTCTTGT+TGG + chr1_4:9087443-9087462 Msa0148700:intron 40.0%
GAGGTAATGATTCTTGTTGG+AGG + chr1_4:9087446-9087465 Msa0148700:intron 40.0%
!! CAACATCCGTTTTTCCTATG+AGG - chr1_4:9087617-9087636 None:intergenic 40.0%
! GTTGAAATTTTCACGGGATC+AGG + chr1_4:9087633-9087652 Msa0148700:CDS 40.0%
TGGAGTAAACCATATGGGAA+TGG + chr1_4:9087803-9087822 Msa0148700:intron 40.0%
! CGGTTATTTCCATTCCCATA+TGG - chr1_4:9087815-9087834 None:intergenic 40.0%
!!! TGGTTTTGTAAGGATGAGTC+AGG - chr1_4:9087902-9087921 None:intergenic 40.0%
CAAAACCAACTTGTAAGGTC+TGG + chr1_4:9087914-9087933 Msa0148700:intron 40.0%
AAGCCATATCTCATCCAATG+TGG + chr1_4:9087964-9087983 Msa0148700:intron 40.0%
TGACCTTAGTTGCCTGATAT+CGG - chr1_4:9088005-9088024 None:intergenic 40.0%
AATTGCAGTTCAGAAAGCCA+AGG + chr1_4:9088226-9088245 Msa0148700:CDS 40.0%
TTCTTGACCCCTTGTAATAG+AGG + chr1_4:9088351-9088370 Msa0148700:intron 40.0%
AATGAGAGCAAAACAAGTGC+TGG + chr1_4:9088378-9088397 Msa0148700:CDS 40.0%
TAGAGAACAAAGACAGCTCT+TGG + chr1_4:9088480-9088499 Msa0148700:CDS 40.0%
TTGGATGCCATGATATCTTC+AGG + chr1_4:9088499-9088518 Msa0148700:CDS 40.0%
CAACCTTAGCAAACAAAGGG+AGG + chr1_4:9086798-9086817 Msa0148700:CDS 45.0%
! CTTCCTCCCTTTGTTTGCTA+AGG - chr1_4:9086804-9086823 None:intergenic 45.0%
GGATTCGAGGAAGAAAGCTA+CGG + chr1_4:9086862-9086881 Msa0148700:CDS 45.0%
CTACGGTGGAGAAAAACATC+CGG + chr1_4:9086879-9086898 Msa0148700:CDS 45.0%
GAAACATCGGTCACGAGATA+TGG + chr1_4:9086999-9087018 Msa0148700:CDS 45.0%
ATCTGTGACAGTTCTTCCAC+AGG - chr1_4:9087114-9087133 None:intergenic 45.0%
! ACCTGTTGTTATTGGCCATC+AGG + chr1_4:9087179-9087198 Msa0148700:CDS 45.0%
ACCTGATGGCCAATAACAAC+AGG - chr1_4:9087183-9087202 None:intergenic 45.0%
ACTCGTTGTAGTGTACCTGA+TGG - chr1_4:9087197-9087216 None:intergenic 45.0%
ATAGCGCAACTCTTTGTCCT+GGG - chr1_4:9087390-9087409 None:intergenic 45.0%
!! TTGTTGGAGGTCTTGTTGCA+AGG + chr1_4:9087459-9087478 Msa0148700:intron 45.0%
CCAGGACCTCATAGGAAAAA+CGG + chr1_4:9087608-9087627 Msa0148700:intron 45.0%
TGCAGAACCTGTGTTTAGCA+AGG + chr1_4:9087767-9087786 Msa0148700:CDS 45.0%
AGCAAGGCAGGAGAAACAAT+TGG + chr1_4:9087783-9087802 Msa0148700:CDS 45.0%
GGGAATGGAAATAACCGATC+AGG + chr1_4:9087818-9087837 Msa0148700:intron 45.0%
AGGCCACATTGGATGAGATA+TGG - chr1_4:9087970-9087989 None:intergenic 45.0%
TCACACTTCATAGGCCACAT+TGG - chr1_4:9087981-9088000 None:intergenic 45.0%
GATATCGGGTCACACTTCAT+AGG - chr1_4:9087990-9088009 None:intergenic 45.0%
ATGAAGTGTGACCCGATATC+AGG + chr1_4:9087990-9088009 Msa0148700:intron 45.0%
GACCTTAGTTGCCTGATATC+GGG - chr1_4:9088004-9088023 None:intergenic 45.0%
CAACCTTAGCAAACAAAGGG+AGG + chr1_4:9086798-9086817 Msa0148700:CDS 45.0%
! CTTCCTCCCTTTGTTTGCTA+AGG - chr1_4:9086804-9086823 None:intergenic 45.0%
GGATTCGAGGAAGAAAGCTA+CGG + chr1_4:9086862-9086881 Msa0148700:CDS 45.0%
CTACGGTGGAGAAAAACATC+CGG + chr1_4:9086879-9086898 Msa0148700:CDS 45.0%
GAAACATCGGTCACGAGATA+TGG + chr1_4:9086999-9087018 Msa0148700:CDS 45.0%
ATCTGTGACAGTTCTTCCAC+AGG - chr1_4:9087114-9087133 None:intergenic 45.0%
! ACCTGTTGTTATTGGCCATC+AGG + chr1_4:9087179-9087198 Msa0148700:CDS 45.0%
ACCTGATGGCCAATAACAAC+AGG - chr1_4:9087183-9087202 None:intergenic 45.0%
ACTCGTTGTAGTGTACCTGA+TGG - chr1_4:9087197-9087216 None:intergenic 45.0%
ATAGCGCAACTCTTTGTCCT+GGG - chr1_4:9087390-9087409 None:intergenic 45.0%
!! TTGTTGGAGGTCTTGTTGCA+AGG + chr1_4:9087459-9087478 Msa0148700:intron 45.0%
CCAGGACCTCATAGGAAAAA+CGG + chr1_4:9087608-9087627 Msa0148700:intron 45.0%
TGCAGAACCTGTGTTTAGCA+AGG + chr1_4:9087767-9087786 Msa0148700:CDS 45.0%
AGCAAGGCAGGAGAAACAAT+TGG + chr1_4:9087783-9087802 Msa0148700:CDS 45.0%
GGGAATGGAAATAACCGATC+AGG + chr1_4:9087818-9087837 Msa0148700:intron 45.0%
AGGCCACATTGGATGAGATA+TGG - chr1_4:9087970-9087989 None:intergenic 45.0%
TCACACTTCATAGGCCACAT+TGG - chr1_4:9087981-9088000 None:intergenic 45.0%
GATATCGGGTCACACTTCAT+AGG - chr1_4:9087990-9088009 None:intergenic 45.0%
ATGAAGTGTGACCCGATATC+AGG + chr1_4:9087990-9088009 Msa0148700:intron 45.0%
GACCTTAGTTGCCTGATATC+GGG - chr1_4:9088004-9088023 None:intergenic 45.0%
TGTCGAGCTCTTCTCGAAGA+AGG - chr1_4:9086780-9086799 None:intergenic 50.0%
TTCGAGGAAGAAAGCTACGG+TGG + chr1_4:9086865-9086884 Msa0148700:CDS 50.0%
GATAGCGCAACTCTTTGTCC+TGG - chr1_4:9087391-9087410 None:intergenic 50.0%
!! CCGTTTTTCCTATGAGGTCC+TGG - chr1_4:9087611-9087630 None:intergenic 50.0%
GAACCTGTGTTTAGCAAGGC+AGG + chr1_4:9087771-9087790 Msa0148700:CDS 50.0%
TCTCCTGCCTTGCTAAACAC+AGG - chr1_4:9087777-9087796 None:intergenic 50.0%
GCAACCCAGACCTTACAAGT+TGG - chr1_4:9087922-9087941 None:intergenic 50.0%
GACCCGATATCAGGCAACTA+AGG + chr1_4:9087999-9088018 Msa0148700:intron 50.0%
ACGCTTCAGATGTCTAGTCC+TGG + chr1_4:9088024-9088043 Msa0148700:intron 50.0%
CGCTTCAGATGTCTAGTCCT+GGG + chr1_4:9088025-9088044 Msa0148700:intron 50.0%
ATGTCTAGTCCTGGGCGTAA+GGG + chr1_4:9088033-9088052 Msa0148700:intron 50.0%
TGATCCTTCCAAGGCTGAGT+CGG + chr1_4:9088555-9088574 Msa0148700:CDS 50.0%
TGTCGAGCTCTTCTCGAAGA+AGG - chr1_4:9086780-9086799 None:intergenic 50.0%
TTCGAGGAAGAAAGCTACGG+TGG + chr1_4:9086865-9086884 Msa0148700:CDS 50.0%
GATAGCGCAACTCTTTGTCC+TGG - chr1_4:9087391-9087410 None:intergenic 50.0%
!! CCGTTTTTCCTATGAGGTCC+TGG - chr1_4:9087611-9087630 None:intergenic 50.0%
GAACCTGTGTTTAGCAAGGC+AGG + chr1_4:9087771-9087790 Msa0148700:CDS 50.0%
TCTCCTGCCTTGCTAAACAC+AGG - chr1_4:9087777-9087796 None:intergenic 50.0%
GCAACCCAGACCTTACAAGT+TGG - chr1_4:9087922-9087941 None:intergenic 50.0%
GACCCGATATCAGGCAACTA+AGG + chr1_4:9087999-9088018 Msa0148700:intron 50.0%
ACGCTTCAGATGTCTAGTCC+TGG + chr1_4:9088024-9088043 Msa0148700:intron 50.0%
CGCTTCAGATGTCTAGTCCT+GGG + chr1_4:9088025-9088044 Msa0148700:intron 50.0%
ATGTCTAGTCCTGGGCGTAA+GGG + chr1_4:9088033-9088052 Msa0148700:intron 50.0%
TGATCCTTCCAAGGCTGAGT+CGG + chr1_4:9088555-9088574 Msa0148700:CDS 50.0%
TTTCACGGGATCAGGTGCGA+AGG + chr1_4:9087641-9087660 Msa0148700:CDS 55.0%
GATGTCTAGTCCTGGGCGTA+AGG + chr1_4:9088032-9088051 Msa0148700:intron 55.0%
AACAAATCGCCCTTACGCCC+AGG - chr1_4:9088045-9088064 None:intergenic 55.0%
GATCCTTCCAAGGCTGAGTC+GGG + chr1_4:9088556-9088575 Msa0148700:CDS 55.0%
TAACCCGACTCAGCCTTGGA+AGG - chr1_4:9088562-9088581 None:intergenic 55.0%
TTTCACGGGATCAGGTGCGA+AGG + chr1_4:9087641-9087660 Msa0148700:CDS 55.0%
GATGTCTAGTCCTGGGCGTA+AGG + chr1_4:9088032-9088051 Msa0148700:intron 55.0%
AACAAATCGCCCTTACGCCC+AGG - chr1_4:9088045-9088064 None:intergenic 55.0%
GATCCTTCCAAGGCTGAGTC+GGG + chr1_4:9088556-9088575 Msa0148700:CDS 55.0%
TAACCCGACTCAGCCTTGGA+AGG - chr1_4:9088562-9088581 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 9086619 9088582 9086619 ID=Msa0148700;Name=Msa0148700
chr1_4 mRNA 9086619 9088582 9086619 ID=Msa0148700-mRNA-1;Parent=Msa0148700;Name=Msa0148700-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|5|0|379
chr1_4 exon 9086619 9087200 9086619 ID=Msa0148700-mRNA-1:exon:3807;Parent=Msa0148700-mRNA-1
chr1_4 exon 9087392 9087448 9087392 ID=Msa0148700-mRNA-1:exon:3808;Parent=Msa0148700-mRNA-1
chr1_4 exon 9087612 9087806 9087612 ID=Msa0148700-mRNA-1:exon:3809;Parent=Msa0148700-mRNA-1
chr1_4 exon 9088188 9088281 9088188 ID=Msa0148700-mRNA-1:exon:3810;Parent=Msa0148700-mRNA-1
chr1_4 exon 9088371 9088582 9088371 ID=Msa0148700-mRNA-1:exon:3811;Parent=Msa0148700-mRNA-1
chr1_4 CDS 9086619 9087200 9086619 ID=Msa0148700-mRNA-1:cds;Parent=Msa0148700-mRNA-1
chr1_4 CDS 9087392 9087448 9087392 ID=Msa0148700-mRNA-1:cds;Parent=Msa0148700-mRNA-1
chr1_4 CDS 9087612 9087806 9087612 ID=Msa0148700-mRNA-1:cds;Parent=Msa0148700-mRNA-1
chr1_4 CDS 9088188 9088281 9088188 ID=Msa0148700-mRNA-1:cds;Parent=Msa0148700-mRNA-1
chr1_4 CDS 9088371 9088582 9088371 ID=Msa0148700-mRNA-1:cds;Parent=Msa0148700-mRNA-1
Gene Sequence

>Msa0148700

ATGGATCAAGATATTTTAGAAGAAGTAACAATCTTAGAGGAACCAATTATAGCTGATTTTCAAAGAATTGTGGAGCTTACAGATTATACAGATATAGCGTCTTCTCAGTTAGCTAATCTCACCAAACATTGGGAGTATAAGCAGGCGAATGCAGTTCGCCTTCTTCGAGAAGAGCTCGACAACCTTAGCAAACAAAGGGAGGAAGTTGAGCTTAAAAAGTGTGAGATACTTAAAGACAATAATGGATTCGAGGAAGAAAGCTACGGTGGAGAAAAACATCCGGATTCAATATTGGATGGTGTTGCAATAAGGAAAAATGACGCTGTCATTCAAAACAAAAGAATTGAAATTGAGGCCGAGTATGATGATGTTGTTTACTGGAAACATCGGTCACGAGATATGGAAAAACGATTGGAGGGAAGTATTCGGAGAGAAGAAATATTAAAAGAAAAGTTGCAAGAAAGTACAGAGATTATTGAAAGACAATCATCACCTGTGGAAGAACTGTCACAGATTCTTAAGAGAGCAGATAATTTCTTACATTTTATACTTCAAAATGCACCTGTTGTTATTGGCCATCAGGACAAAGAGTTGCGCTATCGTTTTATCTATAACCATTTTCCAAGTTTAAAAGAGGAGGACCTCATAGGAAAAACGGATGTTGAAATTTTCACGGGATCAGGTGCGAAGGAATCTCAAGATTTTAAGAGAGAAGTAATGGAGAAAGGAATACCTGCAAAAAGGGAAATAACTTTTGAGACAGAACTGTTTGGATCAAAGACATTTTTGTTGTATGCAGAACCTGTGTTTAGCAAGGCAGGAGAAACAATTGGAGTGAGAAAAAGAGAAAAAATGGCAAAGCTAAGGGAAGAAATTGCAGTTCAGAAAGCCAAGGAAACAGAACTTAATAAAACTATTTACATTACAGAGGAGACAATGAGAGCAAAACAAGTGCTGGCAACAATGTCTCACGAGATAAGATCACCACTTTCTGATGTTGTTAGCATGGCTAAAATTCTTACTACAACAAAACTTGATAGAGAACAAAGACAGCTCTTGGATGCCATGATATCTTCAGGAGATTTGGTTCTTCAACATATTACTGATATACTTGATCCTTCCAAGGCTGAGTCGGGTTAG

Protein sequence

>Msa0148700

MDQDILEEVTILEEPIIADFQRIVELTDYTDIASSQLANLTKHWEYKQANAVRLLREELDNLSKQREEVELKKCEILKDNNGFEEESYGGEKHPDSILDGVAIRKNDAVIQNKRIEIEAEYDDVVYWKHRSRDMEKRLEGSIRREEILKEKLQESTEIIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLKEEDLIGKTDVEIFTGSGAKESQDFKREVMEKGIPAKREITFETELFGSKTFLLYAEPVFSKAGETIGVRKREKMAKLREEIAVQKAKETELNKTIYITEETMRAKQVLATMSHEIRSPLSDVVSMAKILTTTKLDREQRQLLDAMISSGDLVLQHITDILDPSKAESG*