Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0148700 | XP_013465848.1 | 88.718 | 390 | 32 | 2 | 1 | 379 | 1 | 389 | 0.0 | 693 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0148700 | sp|Q3S4A7|AHK5_ARATH | 61.364 | 396 | 129 | 5 | 2 | 379 | 42 | 431 | 1.41e-151 | 454 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0148700 | A0A072VD15 | 88.718 | 390 | 32 | 2 | 1 | 379 | 1 | 389 | 0.0 | 693 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0005610 | Msa0148700 | 0.802829 | 4.659956e-49 | -8.615850e-47 |
Msa0054020 | Msa0148700 | 0.801084 | 1.063964e-48 | -8.615850e-47 |
Msa0096590 | Msa0148700 | 0.800555 | 1.364460e-48 | -8.615850e-47 |
Msa0148700 | Msa1431160 | 0.819795 | 9.626098e-53 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0148700 | MtrunA17_Chr1g0150531 | 88.718 | 390 | 32 | 2 | 1 | 379 | 1 | 389 | 0.0 | 693 |
Msa0148700 | MtrunA17_Chr1g0150511 | 81.203 | 399 | 54 | 3 | 2 | 379 | 43 | 441 | 0.0 | 635 |
Msa0148700 | MtrunA17_Chr3g0136601 | 74.874 | 398 | 79 | 4 | 2 | 379 | 39 | 435 | 0.0 | 586 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0148700 | AT5G10720.1 | 61.364 | 396 | 129 | 5 | 2 | 379 | 42 | 431 | 1.43e-152 | 454 |
Msa0148700 | AT5G10680.2 | 46.212 | 132 | 53 | 4 | 1 | 122 | 37 | 160 | 1.44e-23 | 98.6 |
Msa0148700 | AT5G10680.1 | 46.212 | 132 | 53 | 4 | 1 | 122 | 37 | 160 | 1.44e-23 | 98.6 |
Find 53 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAAAATGCACCTGTTGTTAT+TGG | 0.158249 | 1_4:+9087171 | Msa0148700:CDS |
CTTTGAAAATCAGCTATAAT+TGG | 0.203037 | 1_4:-9086661 | None:intergenic |
AATAAAACTATTTACATTAC+AGG | 0.248651 | 1_4:+9088260 | Msa0148700:CDS |
CATGATATCTTCAGGAGATT+TGG | 0.274046 | 1_4:+9088507 | Msa0148700:CDS |
AGAAAGGAATACCTGCAAAA+AGG | 0.324513 | 1_4:+9087694 | Msa0148700:CDS |
AAAACATCCGGATTCAATAT+TGG | 0.341750 | 1_4:+9086891 | Msa0148700:CDS |
AGAAGAAGTAACAATCTTAG+AGG | 0.346203 | 1_4:+9086636 | Msa0148700:CDS |
GAAACATCGGTCACGAGATA+TGG | 0.358103 | 1_4:+9086999 | Msa0148700:CDS |
AGTATGATGATGTTGTTTAC+TGG | 0.359184 | 1_4:+9086977 | Msa0148700:CDS |
TTTATTAAGTTCTGTTTCCT+TGG | 0.367714 | 1_4:-9088243 | None:intergenic |
TATTGGATGGTGTTGCAATA+AGG | 0.369745 | 1_4:+9086908 | Msa0148700:CDS |
CTGCTTATACTCCCAATGTT+TGG | 0.389829 | 1_4:-9086740 | None:intergenic |
AAGAGAGAAGTAATGGAGAA+AGG | 0.411442 | 1_4:+9087678 | Msa0148700:CDS |
CTTCCTCCCTTTGTTTGCTA+AGG | 0.415873 | 1_4:-9086801 | None:intergenic |
ACCTGTTGTTATTGGCCATC+AGG | 0.429581 | 1_4:+9087179 | Msa0148700:CDS |
AACGATTGGAGGGAAGTATT+CGG | 0.430328 | 1_4:+9087025 | Msa0148700:CDS |
ATAAATTTCCAGGACCTCAT+AGG | 0.439968 | 1_4:+9087600 | Msa0148700:intron |
GAGATACTTAAAGACAATAA+TGG | 0.444436 | 1_4:+9086841 | Msa0148700:CDS |
TTGGATGCCATGATATCTTC+AGG | 0.452888 | 1_4:+9088499 | Msa0148700:CDS |
TAGAGAACAAAGACAGCTCT+TGG | 0.457376 | 1_4:+9088480 | Msa0148700:CDS |
AGCTAATCTCACCAAACATT+GGG | 0.459533 | 1_4:+9086729 | Msa0148700:CDS |
GATCCTTCCAAGGCTGAGTC+GGG | 0.469731 | 1_4:+9088556 | Msa0148700:CDS |
CAAATCTCCTGAAGATATCA+TGG | 0.470277 | 1_4:-9088506 | None:intergenic |
AGCAAGGCAGGAGAAACAAT+TGG | 0.472538 | 1_4:+9087783 | Msa0148700:CDS |
TTTCTAACCCGACTCAGCCT+TGG | 0.478360 | 1_4:-9088563 | None:intergenic |
GAACCTGTGTTTAGCAAGGC+AGG | 0.487467 | 1_4:+9087771 | Msa0148700:CDS |
TGATCCTTCCAAGGCTGAGT+CGG | 0.495766 | 1_4:+9088555 | Msa0148700:CDS |
ACCTGATGGCCAATAACAAC+AGG | 0.495809 | 1_4:-9087180 | None:intergenic |
ACACCATCCAATATTGAATC+CGG | 0.501464 | 1_4:-9086898 | None:intergenic |
AAACAAAAGAATTGAAATTG+AGG | 0.507015 | 1_4:+9086951 | Msa0148700:CDS |
TGTCGAGCTCTTCTCGAAGA+AGG | 0.522863 | 1_4:-9086777 | None:intergenic |
AATGAGAGCAAAACAAGTGC+TGG | 0.527084 | 1_4:+9088378 | Msa0148700:CDS |
ACTTTCTGATGTTGTTAGCA+TGG | 0.533367 | 1_4:+9088429 | Msa0148700:CDS |
CGACAACCTTAGCAAACAAA+GGG | 0.535427 | 1_4:+9086795 | Msa0148700:CDS |
TAGCTAATCTCACCAAACAT+TGG | 0.536290 | 1_4:+9086728 | Msa0148700:CDS |
TAAAGACAATAATGGATTCG+AGG | 0.541318 | 1_4:+9086849 | Msa0148700:CDS |
TCTCCTGCCTTGCTAAACAC+AGG | 0.549002 | 1_4:-9087774 | None:intergenic |
CATCCGGATTCAATATTGGA+TGG | 0.554723 | 1_4:+9086895 | Msa0148700:CDS |
TGATATACTTGATCCTTCCA+AGG | 0.562404 | 1_4:+9088546 | Msa0148700:CDS |
ATCTGTGACAGTTCTTCCAC+AGG | 0.563140 | 1_4:-9087111 | None:intergenic |
CAAACATTGGGAGTATAAGC+AGG | 0.575100 | 1_4:+9086741 | Msa0148700:CDS |
ATGCTAACAACATCAGAAAG+TGG | 0.579722 | 1_4:-9088427 | None:intergenic |
TAACCCGACTCAGCCTTGGA+AGG | 0.583784 | 1_4:-9088559 | None:intergenic |
TCGACAACCTTAGCAAACAA+AGG | 0.586507 | 1_4:+9086794 | Msa0148700:CDS |
TGCAGAACCTGTGTTTAGCA+AGG | 0.605158 | 1_4:+9087767 | Msa0148700:CDS |
TTTCACGGGATCAGGTGCGA+AGG | 0.618292 | 1_4:+9087641 | Msa0148700:CDS |
ATGTTGTTTACTGGAAACAT+CGG | 0.642416 | 1_4:+9086986 | Msa0148700:CDS |
CAACCTTAGCAAACAAAGGG+AGG | 0.643459 | 1_4:+9086798 | Msa0148700:CDS |
TGAAAGACAATCATCACCTG+TGG | 0.646063 | 1_4:+9087095 | Msa0148700:CDS |
AATTGCAGTTCAGAAAGCCA+AGG | 0.648370 | 1_4:+9088226 | Msa0148700:CDS |
GTAAACAACATCATCATACT+CGG | 0.655371 | 1_4:-9086974 | None:intergenic |
GGATTCGAGGAAGAAAGCTA+CGG | 0.661034 | 1_4:+9086862 | Msa0148700:CDS |
TTCGAGGAAGAAAGCTACGG+TGG | 0.662476 | 1_4:+9086865 | Msa0148700:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTGTAAATTTGTTTATAAGT+GGG | - | chr1_4:9087946-9087965 | None:intergenic | 15.0% |
!! | AATAAAACTATTTACATTAC+AGG | + | chr1_4:9088260-9088279 | Msa0148700:CDS | 15.0% |
!! | GAAATTCATAAATCAAAATT+TGG | - | chr1_4:9088300-9088319 | None:intergenic | 15.0% |
!!! | TTGTAAATTTGTTTATAAGT+GGG | - | chr1_4:9087946-9087965 | None:intergenic | 15.0% |
!! | AATAAAACTATTTACATTAC+AGG | + | chr1_4:9088260-9088279 | Msa0148700:CDS | 15.0% |
!! | GAAATTCATAAATCAAAATT+TGG | - | chr1_4:9088300-9088319 | None:intergenic | 15.0% |
!! | AAACAAAAGAATTGAAATTG+AGG | + | chr1_4:9086951-9086970 | Msa0148700:CDS | 20.0% |
!!! | ATTTTCTTAAAATTTGGGTT+AGG | + | chr1_4:9087876-9087895 | Msa0148700:intron | 20.0% |
!!! | TGTAAATTTGTTTATAAGTG+GGG | - | chr1_4:9087945-9087964 | None:intergenic | 20.0% |
!!! | CTTGTAAATTTGTTTATAAG+TGG | - | chr1_4:9087947-9087966 | None:intergenic | 20.0% |
!! | AAACAAAAGAATTGAAATTG+AGG | + | chr1_4:9086951-9086970 | Msa0148700:CDS | 20.0% |
!!! | ATTTTCTTAAAATTTGGGTT+AGG | + | chr1_4:9087876-9087895 | Msa0148700:intron | 20.0% |
!!! | TGTAAATTTGTTTATAAGTG+GGG | - | chr1_4:9087945-9087964 | None:intergenic | 20.0% |
!!! | CTTGTAAATTTGTTTATAAG+TGG | - | chr1_4:9087947-9087966 | None:intergenic | 20.0% |
!! | CTTTGAAAATCAGCTATAAT+TGG | - | chr1_4:9086664-9086683 | None:intergenic | 25.0% |
! | GAGATACTTAAAGACAATAA+TGG | + | chr1_4:9086841-9086860 | Msa0148700:CDS | 25.0% |
!!! | AGATTTTAAGAGAGAAGTAA+TGG | + | chr1_4:9087671-9087690 | Msa0148700:CDS | 25.0% |
!! | ACCTGCATTTTCTTAAAATT+TGG | + | chr1_4:9087870-9087889 | Msa0148700:intron | 25.0% |
!! | CCTGCATTTTCTTAAAATTT+GGG | + | chr1_4:9087871-9087890 | Msa0148700:intron | 25.0% |
!! | GTAAATTTGTTTATAAGTGG+GGG | - | chr1_4:9087944-9087963 | None:intergenic | 25.0% |
! | ATAGGATATGTGTTTATAAG+TGG | + | chr1_4:9088081-9088100 | Msa0148700:intron | 25.0% |
! | TAGGATATGTGTTTATAAGT+GGG | + | chr1_4:9088082-9088101 | Msa0148700:intron | 25.0% |
!!! | GATTGAAAGGTATTAGAATT+TGG | - | chr1_4:9088119-9088138 | None:intergenic | 25.0% |
! | TTTATTAAGTTCTGTTTCCT+TGG | - | chr1_4:9088246-9088265 | None:intergenic | 25.0% |
!! | CTTTGAAAATCAGCTATAAT+TGG | - | chr1_4:9086664-9086683 | None:intergenic | 25.0% |
! | GAGATACTTAAAGACAATAA+TGG | + | chr1_4:9086841-9086860 | Msa0148700:CDS | 25.0% |
!!! | AGATTTTAAGAGAGAAGTAA+TGG | + | chr1_4:9087671-9087690 | Msa0148700:CDS | 25.0% |
!! | ACCTGCATTTTCTTAAAATT+TGG | + | chr1_4:9087870-9087889 | Msa0148700:intron | 25.0% |
!! | CCTGCATTTTCTTAAAATTT+GGG | + | chr1_4:9087871-9087890 | Msa0148700:intron | 25.0% |
!! | GTAAATTTGTTTATAAGTGG+GGG | - | chr1_4:9087944-9087963 | None:intergenic | 25.0% |
! | ATAGGATATGTGTTTATAAG+TGG | + | chr1_4:9088081-9088100 | Msa0148700:intron | 25.0% |
! | TAGGATATGTGTTTATAAGT+GGG | + | chr1_4:9088082-9088101 | Msa0148700:intron | 25.0% |
!!! | GATTGAAAGGTATTAGAATT+TGG | - | chr1_4:9088119-9088138 | None:intergenic | 25.0% |
! | TTTATTAAGTTCTGTTTCCT+TGG | - | chr1_4:9088246-9088265 | None:intergenic | 25.0% |
AGAAGAAGTAACAATCTTAG+AGG | + | chr1_4:9086636-9086655 | Msa0148700:CDS | 30.0% | |
!! | AGCTGATTTTCAAAGAATTG+TGG | + | chr1_4:9086669-9086688 | Msa0148700:CDS | 30.0% |
!! | TAAAGACAATAATGGATTCG+AGG | + | chr1_4:9086849-9086868 | Msa0148700:CDS | 30.0% |
AAAACATCCGGATTCAATAT+TGG | + | chr1_4:9086891-9086910 | Msa0148700:CDS | 30.0% | |
GTAAACAACATCATCATACT+CGG | - | chr1_4:9086977-9086996 | None:intergenic | 30.0% | |
! | AGTATGATGATGTTGTTTAC+TGG | + | chr1_4:9086977-9086996 | Msa0148700:CDS | 30.0% |
! | ATGTTGTTTACTGGAAACAT+CGG | + | chr1_4:9086986-9087005 | Msa0148700:CDS | 30.0% |
! | CCTCTTTTAAACTTGGAAAA+TGG | - | chr1_4:9087427-9087446 | None:intergenic | 30.0% |
! | CCATTTTCCAAGTTTAAAAG+AGG | + | chr1_4:9087424-9087443 | Msa0148700:CDS | 30.0% |
! | TTTTCCAAGTTTAAAAGAGG+AGG | + | chr1_4:9087427-9087446 | Msa0148700:CDS | 30.0% |
! | ATTACCTCCTCTTTTAAACT+TGG | - | chr1_4:9087434-9087453 | None:intergenic | 30.0% |
TTACTTGCACATAAATTTCC+AGG | + | chr1_4:9087590-9087609 | Msa0148700:intron | 30.0% | |
! | AACGGATGTTGAAATTTTCA+CGG | + | chr1_4:9087626-9087645 | Msa0148700:CDS | 30.0% |
!! | AAAGTTATTTCCCTTTTTGC+AGG | - | chr1_4:9087708-9087727 | None:intergenic | 30.0% |
AACAATTGGAGTAAACCATA+TGG | + | chr1_4:9087797-9087816 | Msa0148700:intron | 30.0% | |
ACAATTGGAGTAAACCATAT+GGG | + | chr1_4:9087798-9087817 | Msa0148700:intron | 30.0% | |
! | AGTAACAGTTTTTACCTGAT+CGG | - | chr1_4:9087835-9087854 | None:intergenic | 30.0% |
! | TCAGGTAAAAACTGTTACTT+TGG | + | chr1_4:9087836-9087855 | Msa0148700:intron | 30.0% |
!! | CCCAAATTTTAAGAAAATGC+AGG | - | chr1_4:9087874-9087893 | None:intergenic | 30.0% |
! | ATTTGTTAGTAGTCTCACAT+TGG | + | chr1_4:9088058-9088077 | Msa0148700:intron | 30.0% |
AGGATATGTGTTTATAAGTG+GGG | + | chr1_4:9088083-9088102 | Msa0148700:intron | 30.0% | |
TGCACAAAAACAAGATTGAA+AGG | - | chr1_4:9088132-9088151 | None:intergenic | 30.0% | |
TAATTTCGACAAACAATTGC+AGG | + | chr1_4:9088166-9088185 | Msa0148700:intron | 30.0% | |
GGTGAGAAAAAGAGAAAAAA+TGG | + | chr1_4:9088187-9088206 | Msa0148700:intron | 30.0% | |
AGAAAAAATGGCAAAGCTAA+GGG | + | chr1_4:9088199-9088218 | Msa0148700:CDS | 30.0% | |
AGAAGAAGTAACAATCTTAG+AGG | + | chr1_4:9086636-9086655 | Msa0148700:CDS | 30.0% | |
!! | AGCTGATTTTCAAAGAATTG+TGG | + | chr1_4:9086669-9086688 | Msa0148700:CDS | 30.0% |
!! | TAAAGACAATAATGGATTCG+AGG | + | chr1_4:9086849-9086868 | Msa0148700:CDS | 30.0% |
AAAACATCCGGATTCAATAT+TGG | + | chr1_4:9086891-9086910 | Msa0148700:CDS | 30.0% | |
GTAAACAACATCATCATACT+CGG | - | chr1_4:9086977-9086996 | None:intergenic | 30.0% | |
! | AGTATGATGATGTTGTTTAC+TGG | + | chr1_4:9086977-9086996 | Msa0148700:CDS | 30.0% |
! | ATGTTGTTTACTGGAAACAT+CGG | + | chr1_4:9086986-9087005 | Msa0148700:CDS | 30.0% |
! | CCTCTTTTAAACTTGGAAAA+TGG | - | chr1_4:9087427-9087446 | None:intergenic | 30.0% |
! | CCATTTTCCAAGTTTAAAAG+AGG | + | chr1_4:9087424-9087443 | Msa0148700:CDS | 30.0% |
! | TTTTCCAAGTTTAAAAGAGG+AGG | + | chr1_4:9087427-9087446 | Msa0148700:CDS | 30.0% |
! | ATTACCTCCTCTTTTAAACT+TGG | - | chr1_4:9087434-9087453 | None:intergenic | 30.0% |
TTACTTGCACATAAATTTCC+AGG | + | chr1_4:9087590-9087609 | Msa0148700:intron | 30.0% | |
! | AACGGATGTTGAAATTTTCA+CGG | + | chr1_4:9087626-9087645 | Msa0148700:CDS | 30.0% |
!! | AAAGTTATTTCCCTTTTTGC+AGG | - | chr1_4:9087708-9087727 | None:intergenic | 30.0% |
AACAATTGGAGTAAACCATA+TGG | + | chr1_4:9087797-9087816 | Msa0148700:intron | 30.0% | |
ACAATTGGAGTAAACCATAT+GGG | + | chr1_4:9087798-9087817 | Msa0148700:intron | 30.0% | |
! | AGTAACAGTTTTTACCTGAT+CGG | - | chr1_4:9087835-9087854 | None:intergenic | 30.0% |
! | TCAGGTAAAAACTGTTACTT+TGG | + | chr1_4:9087836-9087855 | Msa0148700:intron | 30.0% |
!! | CCCAAATTTTAAGAAAATGC+AGG | - | chr1_4:9087874-9087893 | None:intergenic | 30.0% |
! | ATTTGTTAGTAGTCTCACAT+TGG | + | chr1_4:9088058-9088077 | Msa0148700:intron | 30.0% |
AGGATATGTGTTTATAAGTG+GGG | + | chr1_4:9088083-9088102 | Msa0148700:intron | 30.0% | |
TGCACAAAAACAAGATTGAA+AGG | - | chr1_4:9088132-9088151 | None:intergenic | 30.0% | |
TAATTTCGACAAACAATTGC+AGG | + | chr1_4:9088166-9088185 | Msa0148700:intron | 30.0% | |
GGTGAGAAAAAGAGAAAAAA+TGG | + | chr1_4:9088187-9088206 | Msa0148700:intron | 30.0% | |
AGAAAAAATGGCAAAGCTAA+GGG | + | chr1_4:9088199-9088218 | Msa0148700:CDS | 30.0% | |
TAGCTAATCTCACCAAACAT+TGG | + | chr1_4:9086728-9086747 | Msa0148700:CDS | 35.0% | |
AGCTAATCTCACCAAACATT+GGG | + | chr1_4:9086729-9086748 | Msa0148700:CDS | 35.0% | |
ACACCATCCAATATTGAATC+CGG | - | chr1_4:9086901-9086920 | None:intergenic | 35.0% | |
!! | TATTGGATGGTGTTGCAATA+AGG | + | chr1_4:9086908-9086927 | Msa0148700:CDS | 35.0% |
ACGAGATATGGAAAAACGAT+TGG | + | chr1_4:9087011-9087030 | Msa0148700:CDS | 35.0% | |
AGATATGGAAAAACGATTGG+AGG | + | chr1_4:9087014-9087033 | Msa0148700:CDS | 35.0% | |
GATATGGAAAAACGATTGGA+GGG | + | chr1_4:9087015-9087034 | Msa0148700:CDS | 35.0% | |
CAAAATGCACCTGTTGTTAT+TGG | + | chr1_4:9087171-9087190 | Msa0148700:CDS | 35.0% | |
ATAAATTTCCAGGACCTCAT+AGG | + | chr1_4:9087600-9087619 | Msa0148700:intron | 35.0% | |
! | ACGGATGTTGAAATTTTCAC+GGG | + | chr1_4:9087627-9087646 | Msa0148700:CDS | 35.0% |
! | AAGAGAGAAGTAATGGAGAA+AGG | + | chr1_4:9087678-9087697 | Msa0148700:CDS | 35.0% |
AGAAAGGAATACCTGCAAAA+AGG | + | chr1_4:9087694-9087713 | Msa0148700:CDS | 35.0% | |
GAAAGGAATACCTGCAAAAA+GGG | + | chr1_4:9087695-9087714 | Msa0148700:CDS | 35.0% | |
!!! | ACTTTTGAGACAGAACTGTT+TGG | + | chr1_4:9087723-9087742 | Msa0148700:CDS | 35.0% |
!!! | CCTTACAAGTTGGTTTTGTA+AGG | - | chr1_4:9087912-9087931 | None:intergenic | 35.0% |
CCTTACAAAACCAACTTGTA+AGG | + | chr1_4:9087909-9087928 | Msa0148700:intron | 35.0% | |
AAAACCAACTTGTAAGGTCT+GGG | + | chr1_4:9087915-9087934 | Msa0148700:intron | 35.0% | |
TTAGTAGTCTCACATTGGAT+AGG | + | chr1_4:9088063-9088082 | Msa0148700:intron | 35.0% | |
GGATATGTGTTTATAAGTGG+GGG | + | chr1_4:9088084-9088103 | Msa0148700:intron | 35.0% | |
GAGAAAAAATGGCAAAGCTA+AGG | + | chr1_4:9088198-9088217 | Msa0148700:CDS | 35.0% | |
ATTGTCTCCTCTATTACAAG+GGG | - | chr1_4:9088361-9088380 | None:intergenic | 35.0% | |
CATTGTCTCCTCTATTACAA+GGG | - | chr1_4:9088362-9088381 | None:intergenic | 35.0% | |
TCATTGTCTCCTCTATTACA+AGG | - | chr1_4:9088363-9088382 | None:intergenic | 35.0% | |
ATGCTAACAACATCAGAAAG+TGG | - | chr1_4:9088430-9088449 | None:intergenic | 35.0% | |
ACTTTCTGATGTTGTTAGCA+TGG | + | chr1_4:9088429-9088448 | Msa0148700:CDS | 35.0% | |
CAAATCTCCTGAAGATATCA+TGG | - | chr1_4:9088509-9088528 | None:intergenic | 35.0% | |
CATGATATCTTCAGGAGATT+TGG | + | chr1_4:9088507-9088526 | Msa0148700:CDS | 35.0% | |
TGATATACTTGATCCTTCCA+AGG | + | chr1_4:9088546-9088565 | Msa0148700:CDS | 35.0% | |
TAGCTAATCTCACCAAACAT+TGG | + | chr1_4:9086728-9086747 | Msa0148700:CDS | 35.0% | |
AGCTAATCTCACCAAACATT+GGG | + | chr1_4:9086729-9086748 | Msa0148700:CDS | 35.0% | |
ACACCATCCAATATTGAATC+CGG | - | chr1_4:9086901-9086920 | None:intergenic | 35.0% | |
!! | TATTGGATGGTGTTGCAATA+AGG | + | chr1_4:9086908-9086927 | Msa0148700:CDS | 35.0% |
ACGAGATATGGAAAAACGAT+TGG | + | chr1_4:9087011-9087030 | Msa0148700:CDS | 35.0% | |
AGATATGGAAAAACGATTGG+AGG | + | chr1_4:9087014-9087033 | Msa0148700:CDS | 35.0% | |
GATATGGAAAAACGATTGGA+GGG | + | chr1_4:9087015-9087034 | Msa0148700:CDS | 35.0% | |
CAAAATGCACCTGTTGTTAT+TGG | + | chr1_4:9087171-9087190 | Msa0148700:CDS | 35.0% | |
ATAAATTTCCAGGACCTCAT+AGG | + | chr1_4:9087600-9087619 | Msa0148700:intron | 35.0% | |
! | ACGGATGTTGAAATTTTCAC+GGG | + | chr1_4:9087627-9087646 | Msa0148700:CDS | 35.0% |
! | AAGAGAGAAGTAATGGAGAA+AGG | + | chr1_4:9087678-9087697 | Msa0148700:CDS | 35.0% |
AGAAAGGAATACCTGCAAAA+AGG | + | chr1_4:9087694-9087713 | Msa0148700:CDS | 35.0% | |
GAAAGGAATACCTGCAAAAA+GGG | + | chr1_4:9087695-9087714 | Msa0148700:CDS | 35.0% | |
!!! | ACTTTTGAGACAGAACTGTT+TGG | + | chr1_4:9087723-9087742 | Msa0148700:CDS | 35.0% |
!!! | CCTTACAAGTTGGTTTTGTA+AGG | - | chr1_4:9087912-9087931 | None:intergenic | 35.0% |
CCTTACAAAACCAACTTGTA+AGG | + | chr1_4:9087909-9087928 | Msa0148700:intron | 35.0% | |
AAAACCAACTTGTAAGGTCT+GGG | + | chr1_4:9087915-9087934 | Msa0148700:intron | 35.0% | |
TTAGTAGTCTCACATTGGAT+AGG | + | chr1_4:9088063-9088082 | Msa0148700:intron | 35.0% | |
GGATATGTGTTTATAAGTGG+GGG | + | chr1_4:9088084-9088103 | Msa0148700:intron | 35.0% | |
GAGAAAAAATGGCAAAGCTA+AGG | + | chr1_4:9088198-9088217 | Msa0148700:CDS | 35.0% | |
ATTGTCTCCTCTATTACAAG+GGG | - | chr1_4:9088361-9088380 | None:intergenic | 35.0% | |
CATTGTCTCCTCTATTACAA+GGG | - | chr1_4:9088362-9088381 | None:intergenic | 35.0% | |
TCATTGTCTCCTCTATTACA+AGG | - | chr1_4:9088363-9088382 | None:intergenic | 35.0% | |
ATGCTAACAACATCAGAAAG+TGG | - | chr1_4:9088430-9088449 | None:intergenic | 35.0% | |
ACTTTCTGATGTTGTTAGCA+TGG | + | chr1_4:9088429-9088448 | Msa0148700:CDS | 35.0% | |
CAAATCTCCTGAAGATATCA+TGG | - | chr1_4:9088509-9088528 | None:intergenic | 35.0% | |
CATGATATCTTCAGGAGATT+TGG | + | chr1_4:9088507-9088526 | Msa0148700:CDS | 35.0% | |
TGATATACTTGATCCTTCCA+AGG | + | chr1_4:9088546-9088565 | Msa0148700:CDS | 35.0% | |
CTGCTTATACTCCCAATGTT+TGG | - | chr1_4:9086743-9086762 | None:intergenic | 40.0% | |
! | CAAACATTGGGAGTATAAGC+AGG | + | chr1_4:9086741-9086760 | Msa0148700:CDS | 40.0% |
TCGACAACCTTAGCAAACAA+AGG | + | chr1_4:9086794-9086813 | Msa0148700:CDS | 40.0% | |
CGACAACCTTAGCAAACAAA+GGG | + | chr1_4:9086795-9086814 | Msa0148700:CDS | 40.0% | |
CATCCGGATTCAATATTGGA+TGG | + | chr1_4:9086895-9086914 | Msa0148700:CDS | 40.0% | |
!! | AACGATTGGAGGGAAGTATT+CGG | + | chr1_4:9087025-9087044 | Msa0148700:CDS | 40.0% |
TGAAAGACAATCATCACCTG+TGG | + | chr1_4:9087095-9087114 | Msa0148700:CDS | 40.0% | |
! | TGCCATTTCAATGAATTCCC+AGG | + | chr1_4:9087370-9087389 | Msa0148700:intron | 40.0% |
GTCCTGGGAATTCATTGAAA+TGG | - | chr1_4:9087375-9087394 | None:intergenic | 40.0% | |
GAGGAGGTAATGATTCTTGT+TGG | + | chr1_4:9087443-9087462 | Msa0148700:intron | 40.0% | |
GAGGTAATGATTCTTGTTGG+AGG | + | chr1_4:9087446-9087465 | Msa0148700:intron | 40.0% | |
!! | CAACATCCGTTTTTCCTATG+AGG | - | chr1_4:9087617-9087636 | None:intergenic | 40.0% |
! | GTTGAAATTTTCACGGGATC+AGG | + | chr1_4:9087633-9087652 | Msa0148700:CDS | 40.0% |
TGGAGTAAACCATATGGGAA+TGG | + | chr1_4:9087803-9087822 | Msa0148700:intron | 40.0% | |
! | CGGTTATTTCCATTCCCATA+TGG | - | chr1_4:9087815-9087834 | None:intergenic | 40.0% |
!!! | TGGTTTTGTAAGGATGAGTC+AGG | - | chr1_4:9087902-9087921 | None:intergenic | 40.0% |
CAAAACCAACTTGTAAGGTC+TGG | + | chr1_4:9087914-9087933 | Msa0148700:intron | 40.0% | |
AAGCCATATCTCATCCAATG+TGG | + | chr1_4:9087964-9087983 | Msa0148700:intron | 40.0% | |
TGACCTTAGTTGCCTGATAT+CGG | - | chr1_4:9088005-9088024 | None:intergenic | 40.0% | |
AATTGCAGTTCAGAAAGCCA+AGG | + | chr1_4:9088226-9088245 | Msa0148700:CDS | 40.0% | |
TTCTTGACCCCTTGTAATAG+AGG | + | chr1_4:9088351-9088370 | Msa0148700:intron | 40.0% | |
AATGAGAGCAAAACAAGTGC+TGG | + | chr1_4:9088378-9088397 | Msa0148700:CDS | 40.0% | |
TAGAGAACAAAGACAGCTCT+TGG | + | chr1_4:9088480-9088499 | Msa0148700:CDS | 40.0% | |
TTGGATGCCATGATATCTTC+AGG | + | chr1_4:9088499-9088518 | Msa0148700:CDS | 40.0% | |
CTGCTTATACTCCCAATGTT+TGG | - | chr1_4:9086743-9086762 | None:intergenic | 40.0% | |
! | CAAACATTGGGAGTATAAGC+AGG | + | chr1_4:9086741-9086760 | Msa0148700:CDS | 40.0% |
TCGACAACCTTAGCAAACAA+AGG | + | chr1_4:9086794-9086813 | Msa0148700:CDS | 40.0% | |
CGACAACCTTAGCAAACAAA+GGG | + | chr1_4:9086795-9086814 | Msa0148700:CDS | 40.0% | |
CATCCGGATTCAATATTGGA+TGG | + | chr1_4:9086895-9086914 | Msa0148700:CDS | 40.0% | |
!! | AACGATTGGAGGGAAGTATT+CGG | + | chr1_4:9087025-9087044 | Msa0148700:CDS | 40.0% |
TGAAAGACAATCATCACCTG+TGG | + | chr1_4:9087095-9087114 | Msa0148700:CDS | 40.0% | |
! | TGCCATTTCAATGAATTCCC+AGG | + | chr1_4:9087370-9087389 | Msa0148700:intron | 40.0% |
GTCCTGGGAATTCATTGAAA+TGG | - | chr1_4:9087375-9087394 | None:intergenic | 40.0% | |
GAGGAGGTAATGATTCTTGT+TGG | + | chr1_4:9087443-9087462 | Msa0148700:intron | 40.0% | |
GAGGTAATGATTCTTGTTGG+AGG | + | chr1_4:9087446-9087465 | Msa0148700:intron | 40.0% | |
!! | CAACATCCGTTTTTCCTATG+AGG | - | chr1_4:9087617-9087636 | None:intergenic | 40.0% |
! | GTTGAAATTTTCACGGGATC+AGG | + | chr1_4:9087633-9087652 | Msa0148700:CDS | 40.0% |
TGGAGTAAACCATATGGGAA+TGG | + | chr1_4:9087803-9087822 | Msa0148700:intron | 40.0% | |
! | CGGTTATTTCCATTCCCATA+TGG | - | chr1_4:9087815-9087834 | None:intergenic | 40.0% |
!!! | TGGTTTTGTAAGGATGAGTC+AGG | - | chr1_4:9087902-9087921 | None:intergenic | 40.0% |
CAAAACCAACTTGTAAGGTC+TGG | + | chr1_4:9087914-9087933 | Msa0148700:intron | 40.0% | |
AAGCCATATCTCATCCAATG+TGG | + | chr1_4:9087964-9087983 | Msa0148700:intron | 40.0% | |
TGACCTTAGTTGCCTGATAT+CGG | - | chr1_4:9088005-9088024 | None:intergenic | 40.0% | |
AATTGCAGTTCAGAAAGCCA+AGG | + | chr1_4:9088226-9088245 | Msa0148700:CDS | 40.0% | |
TTCTTGACCCCTTGTAATAG+AGG | + | chr1_4:9088351-9088370 | Msa0148700:intron | 40.0% | |
AATGAGAGCAAAACAAGTGC+TGG | + | chr1_4:9088378-9088397 | Msa0148700:CDS | 40.0% | |
TAGAGAACAAAGACAGCTCT+TGG | + | chr1_4:9088480-9088499 | Msa0148700:CDS | 40.0% | |
TTGGATGCCATGATATCTTC+AGG | + | chr1_4:9088499-9088518 | Msa0148700:CDS | 40.0% | |
CAACCTTAGCAAACAAAGGG+AGG | + | chr1_4:9086798-9086817 | Msa0148700:CDS | 45.0% | |
! | CTTCCTCCCTTTGTTTGCTA+AGG | - | chr1_4:9086804-9086823 | None:intergenic | 45.0% |
GGATTCGAGGAAGAAAGCTA+CGG | + | chr1_4:9086862-9086881 | Msa0148700:CDS | 45.0% | |
CTACGGTGGAGAAAAACATC+CGG | + | chr1_4:9086879-9086898 | Msa0148700:CDS | 45.0% | |
GAAACATCGGTCACGAGATA+TGG | + | chr1_4:9086999-9087018 | Msa0148700:CDS | 45.0% | |
ATCTGTGACAGTTCTTCCAC+AGG | - | chr1_4:9087114-9087133 | None:intergenic | 45.0% | |
! | ACCTGTTGTTATTGGCCATC+AGG | + | chr1_4:9087179-9087198 | Msa0148700:CDS | 45.0% |
ACCTGATGGCCAATAACAAC+AGG | - | chr1_4:9087183-9087202 | None:intergenic | 45.0% | |
ACTCGTTGTAGTGTACCTGA+TGG | - | chr1_4:9087197-9087216 | None:intergenic | 45.0% | |
ATAGCGCAACTCTTTGTCCT+GGG | - | chr1_4:9087390-9087409 | None:intergenic | 45.0% | |
!! | TTGTTGGAGGTCTTGTTGCA+AGG | + | chr1_4:9087459-9087478 | Msa0148700:intron | 45.0% |
CCAGGACCTCATAGGAAAAA+CGG | + | chr1_4:9087608-9087627 | Msa0148700:intron | 45.0% | |
TGCAGAACCTGTGTTTAGCA+AGG | + | chr1_4:9087767-9087786 | Msa0148700:CDS | 45.0% | |
AGCAAGGCAGGAGAAACAAT+TGG | + | chr1_4:9087783-9087802 | Msa0148700:CDS | 45.0% | |
GGGAATGGAAATAACCGATC+AGG | + | chr1_4:9087818-9087837 | Msa0148700:intron | 45.0% | |
AGGCCACATTGGATGAGATA+TGG | - | chr1_4:9087970-9087989 | None:intergenic | 45.0% | |
TCACACTTCATAGGCCACAT+TGG | - | chr1_4:9087981-9088000 | None:intergenic | 45.0% | |
GATATCGGGTCACACTTCAT+AGG | - | chr1_4:9087990-9088009 | None:intergenic | 45.0% | |
ATGAAGTGTGACCCGATATC+AGG | + | chr1_4:9087990-9088009 | Msa0148700:intron | 45.0% | |
GACCTTAGTTGCCTGATATC+GGG | - | chr1_4:9088004-9088023 | None:intergenic | 45.0% | |
CAACCTTAGCAAACAAAGGG+AGG | + | chr1_4:9086798-9086817 | Msa0148700:CDS | 45.0% | |
! | CTTCCTCCCTTTGTTTGCTA+AGG | - | chr1_4:9086804-9086823 | None:intergenic | 45.0% |
GGATTCGAGGAAGAAAGCTA+CGG | + | chr1_4:9086862-9086881 | Msa0148700:CDS | 45.0% | |
CTACGGTGGAGAAAAACATC+CGG | + | chr1_4:9086879-9086898 | Msa0148700:CDS | 45.0% | |
GAAACATCGGTCACGAGATA+TGG | + | chr1_4:9086999-9087018 | Msa0148700:CDS | 45.0% | |
ATCTGTGACAGTTCTTCCAC+AGG | - | chr1_4:9087114-9087133 | None:intergenic | 45.0% | |
! | ACCTGTTGTTATTGGCCATC+AGG | + | chr1_4:9087179-9087198 | Msa0148700:CDS | 45.0% |
ACCTGATGGCCAATAACAAC+AGG | - | chr1_4:9087183-9087202 | None:intergenic | 45.0% | |
ACTCGTTGTAGTGTACCTGA+TGG | - | chr1_4:9087197-9087216 | None:intergenic | 45.0% | |
ATAGCGCAACTCTTTGTCCT+GGG | - | chr1_4:9087390-9087409 | None:intergenic | 45.0% | |
!! | TTGTTGGAGGTCTTGTTGCA+AGG | + | chr1_4:9087459-9087478 | Msa0148700:intron | 45.0% |
CCAGGACCTCATAGGAAAAA+CGG | + | chr1_4:9087608-9087627 | Msa0148700:intron | 45.0% | |
TGCAGAACCTGTGTTTAGCA+AGG | + | chr1_4:9087767-9087786 | Msa0148700:CDS | 45.0% | |
AGCAAGGCAGGAGAAACAAT+TGG | + | chr1_4:9087783-9087802 | Msa0148700:CDS | 45.0% | |
GGGAATGGAAATAACCGATC+AGG | + | chr1_4:9087818-9087837 | Msa0148700:intron | 45.0% | |
AGGCCACATTGGATGAGATA+TGG | - | chr1_4:9087970-9087989 | None:intergenic | 45.0% | |
TCACACTTCATAGGCCACAT+TGG | - | chr1_4:9087981-9088000 | None:intergenic | 45.0% | |
GATATCGGGTCACACTTCAT+AGG | - | chr1_4:9087990-9088009 | None:intergenic | 45.0% | |
ATGAAGTGTGACCCGATATC+AGG | + | chr1_4:9087990-9088009 | Msa0148700:intron | 45.0% | |
GACCTTAGTTGCCTGATATC+GGG | - | chr1_4:9088004-9088023 | None:intergenic | 45.0% | |
TGTCGAGCTCTTCTCGAAGA+AGG | - | chr1_4:9086780-9086799 | None:intergenic | 50.0% | |
TTCGAGGAAGAAAGCTACGG+TGG | + | chr1_4:9086865-9086884 | Msa0148700:CDS | 50.0% | |
GATAGCGCAACTCTTTGTCC+TGG | - | chr1_4:9087391-9087410 | None:intergenic | 50.0% | |
!! | CCGTTTTTCCTATGAGGTCC+TGG | - | chr1_4:9087611-9087630 | None:intergenic | 50.0% |
GAACCTGTGTTTAGCAAGGC+AGG | + | chr1_4:9087771-9087790 | Msa0148700:CDS | 50.0% | |
TCTCCTGCCTTGCTAAACAC+AGG | - | chr1_4:9087777-9087796 | None:intergenic | 50.0% | |
GCAACCCAGACCTTACAAGT+TGG | - | chr1_4:9087922-9087941 | None:intergenic | 50.0% | |
GACCCGATATCAGGCAACTA+AGG | + | chr1_4:9087999-9088018 | Msa0148700:intron | 50.0% | |
ACGCTTCAGATGTCTAGTCC+TGG | + | chr1_4:9088024-9088043 | Msa0148700:intron | 50.0% | |
CGCTTCAGATGTCTAGTCCT+GGG | + | chr1_4:9088025-9088044 | Msa0148700:intron | 50.0% | |
ATGTCTAGTCCTGGGCGTAA+GGG | + | chr1_4:9088033-9088052 | Msa0148700:intron | 50.0% | |
TGATCCTTCCAAGGCTGAGT+CGG | + | chr1_4:9088555-9088574 | Msa0148700:CDS | 50.0% | |
TGTCGAGCTCTTCTCGAAGA+AGG | - | chr1_4:9086780-9086799 | None:intergenic | 50.0% | |
TTCGAGGAAGAAAGCTACGG+TGG | + | chr1_4:9086865-9086884 | Msa0148700:CDS | 50.0% | |
GATAGCGCAACTCTTTGTCC+TGG | - | chr1_4:9087391-9087410 | None:intergenic | 50.0% | |
!! | CCGTTTTTCCTATGAGGTCC+TGG | - | chr1_4:9087611-9087630 | None:intergenic | 50.0% |
GAACCTGTGTTTAGCAAGGC+AGG | + | chr1_4:9087771-9087790 | Msa0148700:CDS | 50.0% | |
TCTCCTGCCTTGCTAAACAC+AGG | - | chr1_4:9087777-9087796 | None:intergenic | 50.0% | |
GCAACCCAGACCTTACAAGT+TGG | - | chr1_4:9087922-9087941 | None:intergenic | 50.0% | |
GACCCGATATCAGGCAACTA+AGG | + | chr1_4:9087999-9088018 | Msa0148700:intron | 50.0% | |
ACGCTTCAGATGTCTAGTCC+TGG | + | chr1_4:9088024-9088043 | Msa0148700:intron | 50.0% | |
CGCTTCAGATGTCTAGTCCT+GGG | + | chr1_4:9088025-9088044 | Msa0148700:intron | 50.0% | |
ATGTCTAGTCCTGGGCGTAA+GGG | + | chr1_4:9088033-9088052 | Msa0148700:intron | 50.0% | |
TGATCCTTCCAAGGCTGAGT+CGG | + | chr1_4:9088555-9088574 | Msa0148700:CDS | 50.0% | |
TTTCACGGGATCAGGTGCGA+AGG | + | chr1_4:9087641-9087660 | Msa0148700:CDS | 55.0% | |
GATGTCTAGTCCTGGGCGTA+AGG | + | chr1_4:9088032-9088051 | Msa0148700:intron | 55.0% | |
AACAAATCGCCCTTACGCCC+AGG | - | chr1_4:9088045-9088064 | None:intergenic | 55.0% | |
GATCCTTCCAAGGCTGAGTC+GGG | + | chr1_4:9088556-9088575 | Msa0148700:CDS | 55.0% | |
TAACCCGACTCAGCCTTGGA+AGG | - | chr1_4:9088562-9088581 | None:intergenic | 55.0% | |
TTTCACGGGATCAGGTGCGA+AGG | + | chr1_4:9087641-9087660 | Msa0148700:CDS | 55.0% | |
GATGTCTAGTCCTGGGCGTA+AGG | + | chr1_4:9088032-9088051 | Msa0148700:intron | 55.0% | |
AACAAATCGCCCTTACGCCC+AGG | - | chr1_4:9088045-9088064 | None:intergenic | 55.0% | |
GATCCTTCCAAGGCTGAGTC+GGG | + | chr1_4:9088556-9088575 | Msa0148700:CDS | 55.0% | |
TAACCCGACTCAGCCTTGGA+AGG | - | chr1_4:9088562-9088581 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_4 | gene | 9086619 | 9088582 | 9086619 | ID=Msa0148700;Name=Msa0148700 |
chr1_4 | mRNA | 9086619 | 9088582 | 9086619 | ID=Msa0148700-mRNA-1;Parent=Msa0148700;Name=Msa0148700-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|5|0|379 |
chr1_4 | exon | 9086619 | 9087200 | 9086619 | ID=Msa0148700-mRNA-1:exon:3807;Parent=Msa0148700-mRNA-1 |
chr1_4 | exon | 9087392 | 9087448 | 9087392 | ID=Msa0148700-mRNA-1:exon:3808;Parent=Msa0148700-mRNA-1 |
chr1_4 | exon | 9087612 | 9087806 | 9087612 | ID=Msa0148700-mRNA-1:exon:3809;Parent=Msa0148700-mRNA-1 |
chr1_4 | exon | 9088188 | 9088281 | 9088188 | ID=Msa0148700-mRNA-1:exon:3810;Parent=Msa0148700-mRNA-1 |
chr1_4 | exon | 9088371 | 9088582 | 9088371 | ID=Msa0148700-mRNA-1:exon:3811;Parent=Msa0148700-mRNA-1 |
chr1_4 | CDS | 9086619 | 9087200 | 9086619 | ID=Msa0148700-mRNA-1:cds;Parent=Msa0148700-mRNA-1 |
chr1_4 | CDS | 9087392 | 9087448 | 9087392 | ID=Msa0148700-mRNA-1:cds;Parent=Msa0148700-mRNA-1 |
chr1_4 | CDS | 9087612 | 9087806 | 9087612 | ID=Msa0148700-mRNA-1:cds;Parent=Msa0148700-mRNA-1 |
chr1_4 | CDS | 9088188 | 9088281 | 9088188 | ID=Msa0148700-mRNA-1:cds;Parent=Msa0148700-mRNA-1 |
chr1_4 | CDS | 9088371 | 9088582 | 9088371 | ID=Msa0148700-mRNA-1:cds;Parent=Msa0148700-mRNA-1 |
Gene Sequence |
Protein sequence |