Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0054700 | XP_003588865.1 | 82.550 | 149 | 8 | 2 | 1 | 131 | 1 | 149 | 7.09e-75 | 231 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0054700 | G7I884 | 82.550 | 149 | 8 | 2 | 1 | 131 | 1 | 149 | 3.39e-75 | 231 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0054700 | Msa0661160 | 0.959628 | 1.188110e-117 | -8.615850e-47 |
| Msa0054700 | Msa0891740 | 0.819553 | 1.093570e-52 | -8.615850e-47 |
| Msa0054700 | Msa0910990 | 0.842403 | 2.642098e-58 | -8.615850e-47 |
| Msa0054700 | Msa0956530 | 0.803225 | 3.859191e-49 | -8.615850e-47 |
| Msa0054700 | Msa1359680 | 0.885662 | 6.704333e-72 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0054700 | MtrunA17_Chr1g0150121 | 82.550 | 149 | 8 | 2 | 1 | 131 | 1 | 149 | 6.52e-79 | 231 |
| Msa0054700 | MtrunA17_Chr3g0136861 | 33.529 | 170 | 61 | 4 | 1 | 119 | 1 | 169 | 1.66e-16 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 51 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTCTATTGTTGTTGATTC+TGG | 0.208831 | 1_2:+9421243 | None:intergenic |
| TTCTCACCATTTGGGTTCTT+AGG | 0.223638 | 1_2:-9416922 | Msa0054700:three_prime_UTR |
| CTGTCTGCGTTTGAGTTTCA+TGG | 0.247458 | 1_2:-9416958 | Msa0054700:three_prime_UTR |
| TGAAATACGAACATTCAAAA+AGG | 0.266282 | 1_2:+9421076 | None:intergenic |
| TTCAGCGTCCTTGTTGCTTT+GGG | 0.275461 | 1_2:-9417267 | Msa0054700:CDS |
| AGATGAATGCTTATTGCTTA+TGG | 0.285315 | 1_2:-9417126 | Msa0054700:three_prime_UTR |
| GTGATGCGTCAATAATTAAA+TGG | 0.297952 | 1_2:-9417226 | Msa0054700:exon |
| AATTTAATGTTCTCACCATT+TGG | 0.301117 | 1_2:-9416931 | Msa0054700:three_prime_UTR |
| GGAATTCAGGTAATTGAGTT+TGG | 0.301722 | 1_2:+9421187 | None:intergenic |
| TATTGCTTATGGCTTGCGAC+TGG | 0.317936 | 1_2:-9417115 | Msa0054700:three_prime_UTR |
| GAAGTCGTTCCAGTCTCTTT+TGG | 0.333344 | 1_2:+9420605 | None:intergenic |
| GTCAATAATTAAATGGCAAC+TGG | 0.334356 | 1_2:-9417219 | Msa0054700:three_prime_UTR |
| ATTTAATGTTCTCACCATTT+GGG | 0.340283 | 1_2:-9416930 | Msa0054700:three_prime_UTR |
| TCTGATAGAGCAAGGAATTC+AGG | 0.352555 | 1_2:+9421174 | None:intergenic |
| CACCATTTGGGTTCTTAGGT+TGG | 0.364969 | 1_2:-9416918 | Msa0054700:three_prime_UTR |
| AATATACCTTCACTCAAATC+TGG | 0.367127 | 1_2:+9420583 | None:intergenic |
| GTCACGTTCTCTGTTTCATT+TGG | 0.368600 | 1_2:+9421273 | None:intergenic |
| CTTTCTCTCTTCACTAGAAT+AGG | 0.378897 | 1_2:+9421314 | None:intergenic |
| AGAGAGAAAGAGAAAGAATA+TGG | 0.380703 | 1_2:-9421301 | Msa0054700:exon |
| GGGAGTGTCGCAAGATGATC+AGG | 0.382472 | 1_2:+9421150 | None:intergenic |
| GTTCAGCGTCCTTGTTGCTT+TGG | 0.391508 | 1_2:-9417268 | Msa0054700:CDS |
| ATTGCTTATGGCTTGCGACT+GGG | 0.406029 | 1_2:-9417114 | Msa0054700:three_prime_UTR |
| CAAAAGTCATTATCTAACTT+TGG | 0.413615 | 1_2:+9417020 | None:intergenic |
| AGAGAGAATGAGCACGTTGA+AGG | 0.421510 | 1_2:+9421124 | None:intergenic |
| TCGAATTGTTCTTCGGAAGA+TGG | 0.432800 | 1_2:+9419318 | None:intergenic |
| TACAAACAGCAGCTCATAGC+TGG | 0.435981 | 1_2:+9417151 | None:intergenic |
| TCAACTACGTATATATTGTA+TGG | 0.445908 | 1_2:-9417045 | Msa0054700:three_prime_UTR |
| AGCAGAACAGTGGCAAGATA+TGG | 0.460848 | 1_2:-9419388 | Msa0054700:intron |
| AATTTGATCGAATTGTTCTT+CGG | 0.466862 | 1_2:+9419311 | None:intergenic |
| AAGTGTGTGCCAAAAGAGAC+TGG | 0.467228 | 1_2:-9420614 | Msa0054700:CDS |
| TACAATATATACGTAGTTGA+AGG | 0.499424 | 1_2:+9417048 | None:intergenic |
| ATTCGATCAAATTGATTCCA+AGG | 0.503194 | 1_2:-9419301 | Msa0054700:CDS |
| TCAGCGTCCTTGTTGCTTTG+GGG | 0.510939 | 1_2:-9417266 | Msa0054700:CDS |
| GAATGAGCACGTTGAAGGAG+TGG | 0.521754 | 1_2:+9421129 | None:intergenic |
| GGCCAACCTAAGAACCCAAA+TGG | 0.527569 | 1_2:+9416916 | None:intergenic |
| TGCAGTATATGTGAACTACA+TGG | 0.528259 | 1_2:-9417309 | Msa0054700:intron |
| GGTAGAAGTGAGTTTGGCGA+GGG | 0.533143 | 1_2:+9421098 | None:intergenic |
| TTGCTTATGGCTTGCGACTG+GGG | 0.534371 | 1_2:-9417113 | Msa0054700:three_prime_UTR |
| AGGAGCAGACTGGTCAAAAG+AGG | 0.536792 | 1_2:-9419347 | Msa0054700:CDS |
| CATGAAACTCAAACGCAGAC+AGG | 0.542569 | 1_2:+9416959 | None:intergenic |
| AATGAGCACGTTGAAGGAGT+GGG | 0.547922 | 1_2:+9421130 | None:intergenic |
| GGGTAGAAGTGAGTTTGGCG+AGG | 0.549628 | 1_2:+9421097 | None:intergenic |
| TGGGGCGACTCATCAAAGCT+TGG | 0.551107 | 1_2:-9417248 | Msa0054700:CDS |
| CGACTTCCAGATTTGAGTGA+AGG | 0.560270 | 1_2:-9420589 | Msa0054700:intron |
| TGGTAGGAGAGAATCCAAAT+CGG | 0.618587 | 1_2:-9421350 | None:intergenic |
| AGAACAGTGGCAAGATATGG+TGG | 0.633543 | 1_2:-9419385 | Msa0054700:CDS |
| GGTTATTTCAAGCAGAACAG+TGG | 0.634126 | 1_2:-9419398 | Msa0054700:intron |
| GATCAGGGTCTGATAGAGCA+AGG | 0.637548 | 1_2:+9421166 | None:intergenic |
| TCAATAATTAAATGGCAACT+GGG | 0.658227 | 1_2:-9417218 | Msa0054700:three_prime_UTR |
| GGAGTGTCGCAAGATGATCA+GGG | 0.666656 | 1_2:+9421151 | None:intergenic |
| TGAGTCGCCCCAAAGCAACA+AGG | 0.677678 | 1_2:+9417259 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTTTTTTTTTTTTTTTC+TGG | - | chr1_2:9417297-9417316 | Msa0054700:CDS | 10.0% |
| !!! | AATAAAGTTACAATTTTTGA+AGG | + | chr1_2:9417230-9417249 | None:intergenic | 15.0% |
| !! | TGTGTTTGAAAAAAAAAAAA+TGG | - | chr1_2:9418841-9418860 | Msa0054700:intron | 15.0% |
| !! | TAATAAATATATCTCAAAGA+TGG | + | chr1_2:9419396-9419415 | None:intergenic | 15.0% |
| !!! | TTTTGAAGGAAAACATTAAT+GGG | + | chr1_2:9417216-9417235 | None:intergenic | 20.0% |
| !!! | TTTTTGAAGGAAAACATTAA+TGG | + | chr1_2:9417217-9417236 | None:intergenic | 20.0% |
| !! | TGTTGCATACAAATAAAAAA+GGG | - | chr1_2:9418352-9418371 | Msa0054700:intron | 20.0% |
| !!! | GCTATCTTAGTTTTTTTTTA+GGG | + | chr1_2:9418597-9418616 | None:intergenic | 20.0% |
| !! | ATGTTAAGAATTTGATTGAA+TGG | - | chr1_2:9418745-9418764 | Msa0054700:intron | 20.0% |
| !! | TGTTAAGAATTTGATTGAAT+GGG | - | chr1_2:9418746-9418765 | Msa0054700:intron | 20.0% |
| !! | CTACCAAAATACATAAAATA+TGG | + | chr1_2:9419173-9419192 | None:intergenic | 20.0% |
| !! | TTATGATCTCTATCTAATTT+AGG | - | chr1_2:9419203-9419222 | Msa0054700:intron | 20.0% |
| !! | TATGATCTCTATCTAATTTA+GGG | - | chr1_2:9419204-9419223 | Msa0054700:intron | 20.0% |
| !! | ACATAATTAGTTAATTCGTT+TGG | - | chr1_2:9419705-9419724 | Msa0054700:intron | 20.0% |
| !!! | AAAGGTAAAATTTGAGTTAT+TGG | - | chr1_2:9419904-9419923 | Msa0054700:intron | 20.0% |
| !! | ATAAATTTCCATTGTAGTTA+TGG | - | chr1_2:9419985-9420004 | Msa0054700:intron | 20.0% |
| !!! | AAGTATAGTTATTTCAGTTA+TGG | - | chr1_2:9420338-9420357 | Msa0054700:intron | 20.0% |
| !! | GTAAACAAAGCAATTATATA+TGG | + | chr1_2:9420865-9420884 | None:intergenic | 20.0% |
| !!! | TATATAATTGCTTTGTTTAC+TGG | - | chr1_2:9420865-9420884 | Msa0054700:intron | 20.0% |
| !!! | CCTATAAATATTCTAGATTT+TGG | + | chr1_2:9420897-9420916 | None:intergenic | 20.0% |
| !!! | CCAAAATCTAGAATATTTAT+AGG | - | chr1_2:9420894-9420913 | Msa0054700:intron | 20.0% |
| ! | GAAATACGAACATTCAAAAA+GGG | + | chr1_2:9417186-9417205 | None:intergenic | 25.0% |
| ! | TGAAATACGAACATTCAAAA+AGG | + | chr1_2:9417187-9417206 | None:intergenic | 25.0% |
| ! | ACAACAACAAAAACGAAAAT+GGG | + | chr1_2:9417278-9417297 | None:intergenic | 25.0% |
| ! | AACAACAACAAAAACGAAAA+TGG | + | chr1_2:9417279-9417298 | None:intergenic | 25.0% |
| !!! | TTGTTCAAGTTTTGACATTT+GGG | - | chr1_2:9417568-9417587 | Msa0054700:intron | 25.0% |
| !! | CAAACTATTTTCATATAAGC+TGG | - | chr1_2:9417773-9417792 | Msa0054700:intron | 25.0% |
| !! | TTATCATAAGTCCTTTTCAT+TGG | - | chr1_2:9417980-9417999 | Msa0054700:intron | 25.0% |
| ! | ACACTTAGAATGAAATATCA+TGG | + | chr1_2:9418031-9418050 | None:intergenic | 25.0% |
| ! | GTGTTGCATACAAATAAAAA+AGG | - | chr1_2:9418351-9418370 | Msa0054700:intron | 25.0% |
| ! | CATACAAATAAAAAAGGGAA+TGG | - | chr1_2:9418357-9418376 | Msa0054700:intron | 25.0% |
| !!! | CGCTATCTTAGTTTTTTTTT+AGG | + | chr1_2:9418598-9418617 | None:intergenic | 25.0% |
| ! | AATTTGATCGAATTGTTCTT+CGG | + | chr1_2:9418952-9418971 | None:intergenic | 25.0% |
| ! | AATAACAGAAAACAGAGTTT+GGG | + | chr1_2:9419119-9419138 | None:intergenic | 25.0% |
| ! | CCAAAATACATAAAATATGG+AGG | + | chr1_2:9419170-9419189 | None:intergenic | 25.0% |
| !! | CCTCCATATTTTATGTATTT+TGG | - | chr1_2:9419167-9419186 | Msa0054700:intron | 25.0% |
| !!! | ATTGAGTTTTAGCAAAAGTT+CGG | - | chr1_2:9419426-9419445 | Msa0054700:intron | 25.0% |
| ! | TAATGAGAAAATGAAAGCTA+AGG | + | chr1_2:9419764-9419783 | None:intergenic | 25.0% |
| !!! | TTTTGTTTAAAGCAGTTTAG+TGG | + | chr1_2:9419796-9419815 | None:intergenic | 25.0% |
| !! | ATTGTTGGTTGAATTATTCA+AGG | - | chr1_2:9419879-9419898 | Msa0054700:intron | 25.0% |
| !! | TTGTTGGTTGAATTATTCAA+GGG | - | chr1_2:9419880-9419899 | Msa0054700:intron | 25.0% |
| ! | AAATGTAATGATAAAGCTTG+TGG | - | chr1_2:9420173-9420192 | Msa0054700:intron | 25.0% |
| ! | AATGTAATGATAAAGCTTGT+GGG | - | chr1_2:9420174-9420193 | Msa0054700:intron | 25.0% |
| ! | CTACTCATTATTAATTGAGT+TGG | + | chr1_2:9420266-9420285 | None:intergenic | 25.0% |
| ! | CAACTCAATTAATAATGAGT+AGG | - | chr1_2:9420264-9420283 | Msa0054700:intron | 25.0% |
| !! | ATAGTTATTTCAGTTATGGA+CGG | - | chr1_2:9420342-9420361 | Msa0054700:intron | 25.0% |
| ! | TCAATAATTAAATGGCAACT+GGG | - | chr1_2:9421042-9421061 | Msa0054700:intron | 25.0% |
| ! | TACAATATATACGTAGTTGA+AGG | + | chr1_2:9421215-9421234 | None:intergenic | 25.0% |
| ! | TCAACTACGTATATATTGTA+TGG | - | chr1_2:9421215-9421234 | Msa0054700:CDS | 25.0% |
| ! | CAAAAGTCATTATCTAACTT+TGG | + | chr1_2:9421243-9421262 | None:intergenic | 25.0% |
| ! | AATTTAATGTTCTCACCATT+TGG | - | chr1_2:9421329-9421348 | Msa0054700:five_prime_UTR | 25.0% |
| ! | ATTTAATGTTCTCACCATTT+GGG | - | chr1_2:9421330-9421349 | Msa0054700:five_prime_UTR | 25.0% |
| AGAGAGAAAGAGAAAGAATA+TGG | - | chr1_2:9416959-9416978 | Msa0054700:three_prime_UTR | 30.0% | |
| !! | GATTCTATTGTTGTTGATTC+TGG | + | chr1_2:9417020-9417039 | None:intergenic | 30.0% |
| ! | ATTTAAAGGCATGGTCATTT+GGG | + | chr1_2:9417353-9417372 | None:intergenic | 30.0% |
| ! | CTAAAGGGTTCTTTTCTTTT+GGG | - | chr1_2:9417386-9417405 | Msa0054700:intron | 30.0% |
| !! | GTTGTTCAAGTTTTGACATT+TGG | - | chr1_2:9417567-9417586 | Msa0054700:intron | 30.0% |
| !! | TGTTCAAGTTTTGACATTTG+GGG | - | chr1_2:9417569-9417588 | Msa0054700:intron | 30.0% |
| ! | GATTTTGTGTTCAACAGAAT+AGG | - | chr1_2:9417621-9417640 | Msa0054700:intron | 30.0% |
| AATATACCTTCACTCAAATC+TGG | + | chr1_2:9417680-9417699 | None:intergenic | 30.0% | |
| GTTACTTATCCAAACAAACA+GGG | + | chr1_2:9417725-9417744 | None:intergenic | 30.0% | |
| AGTTACTTATCCAAACAAAC+AGG | + | chr1_2:9417726-9417745 | None:intergenic | 30.0% | |
| AAAAGGACTTATGATAAGCA+TGG | + | chr1_2:9417977-9417996 | None:intergenic | 30.0% | |
| TAATAGCTCAACCAATGAAA+AGG | + | chr1_2:9417994-9418013 | None:intergenic | 30.0% | |
| CATAAAAGAAAGACAGAACT+TGG | + | chr1_2:9418169-9418188 | None:intergenic | 30.0% | |
| TGAGTCAACGGTATATAAAA+AGG | - | chr1_2:9418327-9418346 | Msa0054700:intron | 30.0% | |
| ACAAATAAAAAAGGGAATGG+AGG | - | chr1_2:9418360-9418379 | Msa0054700:intron | 30.0% | |
| !!! | GTTTTTTTTTAGGGCAATAG+CGG | + | chr1_2:9418588-9418607 | None:intergenic | 30.0% |
| !! | AGATTTTGAGGGAAAAAACT+GGG | + | chr1_2:9418635-9418654 | None:intergenic | 30.0% |
| ! | TATAGCATAGCAGATTTTGA+GGG | + | chr1_2:9418646-9418665 | None:intergenic | 30.0% |
| AAGAATTTGATTGAATGGGT+TGG | - | chr1_2:9418750-9418769 | Msa0054700:intron | 30.0% | |
| !! | CTTTTTGTTTAACACTCTGT+TGG | - | chr1_2:9418784-9418803 | Msa0054700:intron | 30.0% |
| TCAAAATGAAAGACACCTAT+GGG | + | chr1_2:9418815-9418834 | None:intergenic | 30.0% | |
| TTCAAAATGAAAGACACCTA+TGG | + | chr1_2:9418816-9418835 | None:intergenic | 30.0% | |
| ! | ATTCGATCAAATTGATTCCA+AGG | - | chr1_2:9418959-9418978 | Msa0054700:intron | 30.0% |
| AAACAGAGTTTGGGTAATAA+GGG | + | chr1_2:9419110-9419129 | None:intergenic | 30.0% | |
| AAAACAGAGTTTGGGTAATA+AGG | + | chr1_2:9419111-9419130 | None:intergenic | 30.0% | |
| CAATAACAGAAAACAGAGTT+TGG | + | chr1_2:9419120-9419139 | None:intergenic | 30.0% | |
| GCAACGAAGTTAAAAATCAT+AGG | - | chr1_2:9419333-9419352 | Msa0054700:CDS | 30.0% | |
| GGTTATATGAGATTTGAATG+TGG | - | chr1_2:9419354-9419373 | Msa0054700:CDS | 30.0% | |
| TATATGAGATTTGAATGTGG+AGG | - | chr1_2:9419357-9419376 | Msa0054700:CDS | 30.0% | |
| TAATACGATTATACGACTGA+AGG | - | chr1_2:9419506-9419525 | Msa0054700:intron | 30.0% | |
| AATACGATTATACGACTGAA+GGG | - | chr1_2:9419507-9419526 | Msa0054700:intron | 30.0% | |
| !! | TAGCGAGTTTTGATGTTTAT+CGG | - | chr1_2:9419572-9419591 | Msa0054700:intron | 30.0% |
| TTCATTTAGCAAGTGATCTT+AGG | - | chr1_2:9419738-9419757 | Msa0054700:intron | 30.0% | |
| GTTGAATTATTCAAGGGAAA+AGG | - | chr1_2:9419886-9419905 | Msa0054700:intron | 30.0% | |
| TACTAGTTAGATTTCCTGAA+TGG | - | chr1_2:9419932-9419951 | Msa0054700:intron | 30.0% | |
| TCAAGATCCTTACACTAATA+AGG | + | chr1_2:9419966-9419985 | None:intergenic | 30.0% | |
| GTGTATAAGTAGAACAAAAG+AGG | - | chr1_2:9420072-9420091 | Msa0054700:intron | 30.0% | |
| GTGTTTGATTATTTGATGAG+TGG | - | chr1_2:9420137-9420156 | Msa0054700:intron | 30.0% | |
| ATTATTTGATGAGTGGTTCT+GGG | - | chr1_2:9420144-9420163 | Msa0054700:intron | 30.0% | |
| ! | TGAACTCTTAATTTAGCCTT+TGG | - | chr1_2:9420293-9420312 | Msa0054700:intron | 30.0% |
| ! | AATTTAGCCTTTGGTTATAG+AGG | - | chr1_2:9420302-9420321 | Msa0054700:intron | 30.0% |
| AATTGATCCTCTATAACCAA+AGG | + | chr1_2:9420312-9420331 | None:intergenic | 30.0% | |
| AATCTAGAAGACAAAGGATA+TGG | - | chr1_2:9420649-9420668 | Msa0054700:intron | 30.0% | |
| ATCTTTAGATCTAAACCTGA+AGG | - | chr1_2:9420672-9420691 | Msa0054700:intron | 30.0% | |
| !!! | CTTTTAAAACAAAAGCCTTC+AGG | + | chr1_2:9420690-9420709 | None:intergenic | 30.0% |
| !!! | GCTTTTGTTTTAAAAGCCAA+AGG | - | chr1_2:9420694-9420713 | Msa0054700:intron | 30.0% |
| TTAGCCTGAAAATCATACTT+GGG | - | chr1_2:9420780-9420799 | Msa0054700:intron | 30.0% | |
| GTGATGCGTCAATAATTAAA+TGG | - | chr1_2:9421034-9421053 | Msa0054700:intron | 30.0% | |
| GTCAATAATTAAATGGCAAC+TGG | - | chr1_2:9421041-9421060 | Msa0054700:intron | 30.0% | |
| AGATGAATGCTTATTGCTTA+TGG | - | chr1_2:9421134-9421153 | Msa0054700:CDS | 30.0% | |
| !! | GGTTAACTATGCTTTTTAAC+TGG | - | chr1_2:9421168-9421187 | Msa0054700:CDS | 30.0% |
| CTTTCTCTCTTCACTAGAAT+AGG | + | chr1_2:9416949-9416968 | None:intergenic | 35.0% | |
| GGAATTCAGGTAATTGAGTT+TGG | + | chr1_2:9417076-9417095 | None:intergenic | 35.0% | |
| AAAAAGGGTAGAAGTGAGTT+TGG | + | chr1_2:9417171-9417190 | None:intergenic | 35.0% | |
| ! | GATTTAAAGGCATGGTCATT+TGG | + | chr1_2:9417354-9417373 | None:intergenic | 35.0% |
| GCTTACAAGCTCAGATTTAA+AGG | + | chr1_2:9417367-9417386 | None:intergenic | 35.0% | |
| AATCTGAGCTTGTAAGCTAA+AGG | - | chr1_2:9417370-9417389 | Msa0054700:intron | 35.0% | |
| ATCTGAGCTTGTAAGCTAAA+GGG | - | chr1_2:9417371-9417390 | Msa0054700:intron | 35.0% | |
| ! | GCTAAAGGGTTCTTTTCTTT+TGG | - | chr1_2:9417385-9417404 | Msa0054700:intron | 35.0% |
| TTTCTTAGACCCTGTTTGTT+TGG | - | chr1_2:9417713-9417732 | Msa0054700:intron | 35.0% | |
| AATAAGCGGAAACCAAGTTA+TGG | - | chr1_2:9417835-9417854 | Msa0054700:intron | 35.0% | |
| CTTATGACACATCCATAACT+TGG | + | chr1_2:9417850-9417869 | None:intergenic | 35.0% | |
| !!! | TTTTAGAGTCCTACAGATGT+AGG | + | chr1_2:9418145-9418164 | None:intergenic | 35.0% |
| ACAATATCAGTAGTAAGCTG+TGG | - | chr1_2:9418220-9418239 | Msa0054700:intron | 35.0% | |
| TAGTAAGCTGTGGTAAATAG+TGG | - | chr1_2:9418230-9418249 | Msa0054700:intron | 35.0% | |
| !! | CTATCTGCTATTTCACATAG+CGG | + | chr1_2:9418268-9418287 | None:intergenic | 35.0% |
| ATAAATGGTACACATAGTGC+AGG | - | chr1_2:9418479-9418498 | Msa0054700:intron | 35.0% | |
| CAGTAGCAGGAAAAAAAATC+GGG | + | chr1_2:9418531-9418550 | None:intergenic | 35.0% | |
| GCAGTAGCAGGAAAAAAAAT+CGG | + | chr1_2:9418532-9418551 | None:intergenic | 35.0% | |
| !! | CAGATTTTGAGGGAAAAAAC+TGG | + | chr1_2:9418636-9418655 | None:intergenic | 35.0% |
| ! | GTATAGCATAGCAGATTTTG+AGG | + | chr1_2:9418647-9418666 | None:intergenic | 35.0% |
| CAAATAACAGTGTGCTATAG+CGG | + | chr1_2:9418669-9418688 | None:intergenic | 35.0% | |
| ! | CACACTGTTATTTGACAACA+CGG | - | chr1_2:9418675-9418694 | Msa0054700:intron | 35.0% |
| ! | ACACTGTTATTTGACAACAC+GGG | - | chr1_2:9418676-9418695 | Msa0054700:intron | 35.0% |
| CAAAATGAAAGACACCTATG+GGG | + | chr1_2:9418814-9418833 | None:intergenic | 35.0% | |
| TTTATTCTCACAAAACCCTC+AGG | + | chr1_2:9419289-9419308 | None:intergenic | 35.0% | |
| !! | AGTTTTAGCAAAAGTTCGGA+AGG | - | chr1_2:9419430-9419449 | Msa0054700:intron | 35.0% |
| !! | TTCGGAAGGTATTTACCATA+GGG | - | chr1_2:9419444-9419463 | Msa0054700:intron | 35.0% |
| !! | AGCGAGTTTTGATGTTTATC+GGG | - | chr1_2:9419573-9419592 | Msa0054700:intron | 35.0% |
| ATCAACAGTACACTAACAGA+AGG | + | chr1_2:9419627-9419646 | None:intergenic | 35.0% | |
| AGGTTCACCTTATTAGTGTA+AGG | - | chr1_2:9419956-9419975 | Msa0054700:intron | 35.0% | |
| TGTGCATTCCATAACTACAA+TGG | + | chr1_2:9419996-9420015 | None:intergenic | 35.0% | |
| AATGCACACCTAATGTCTAT+GGG | - | chr1_2:9420008-9420027 | Msa0054700:intron | 35.0% | |
| TAAGTAGAACAAAAGAGGCA+TGG | - | chr1_2:9420077-9420096 | Msa0054700:intron | 35.0% | |
| ! | AACAAAAGAGGCATGGAATA+AGG | - | chr1_2:9420084-9420103 | Msa0054700:intron | 35.0% |
| GATTATTTGATGAGTGGTTC+TGG | - | chr1_2:9420143-9420162 | Msa0054700:intron | 35.0% | |
| AATGTAACGATTGCCATTAC+GGG | + | chr1_2:9420451-9420470 | None:intergenic | 35.0% | |
| GAATGTAACGATTGCCATTA+CGG | + | chr1_2:9420452-9420471 | None:intergenic | 35.0% | |
| GGCAATCGTTACATTCTTAA+CGG | - | chr1_2:9420456-9420475 | Msa0054700:intron | 35.0% | |
| ! | GAACCATTAGGTCATCTTTT+GGG | + | chr1_2:9420607-9420626 | None:intergenic | 35.0% |
| ! | AGAACCATTAGGTCATCTTT+TGG | + | chr1_2:9420608-9420627 | None:intergenic | 35.0% |
| !! | CAAGTATGATTTTCAGGCTA+AGG | + | chr1_2:9420781-9420800 | None:intergenic | 35.0% |
| CTTAGCCTGAAAATCATACT+TGG | - | chr1_2:9420779-9420798 | Msa0054700:intron | 35.0% | |
| TAGCCTGAAAATCATACTTG+GGG | - | chr1_2:9420781-9420800 | Msa0054700:intron | 35.0% | |
| TGCAGTATATGTGAACTACA+TGG | - | chr1_2:9420951-9420970 | Msa0054700:intron | 35.0% | |
| !! | GTTTTGAGTCAACACCGATT+TGG | + | chr1_2:9416927-9416946 | None:intergenic | 40.0% |
| GTCACGTTCTCTGTTTCATT+TGG | + | chr1_2:9416990-9417009 | None:intergenic | 40.0% | |
| TCTGATAGAGCAAGGAATTC+AGG | + | chr1_2:9417089-9417108 | None:intergenic | 40.0% | |
| ATAGTGAAGTTGAAGTGCAG+AGG | - | chr1_2:9417321-9417340 | Msa0054700:intron | 40.0% | |
| TAGTGAAGTTGAAGTGCAGA+GGG | - | chr1_2:9417322-9417341 | Msa0054700:intron | 40.0% | |
| CAAGCTCAGATTTAAAGGCA+TGG | + | chr1_2:9417362-9417381 | None:intergenic | 40.0% | |
| GTCTGATCGAATGACATGTT+CGG | - | chr1_2:9417441-9417460 | Msa0054700:intron | 40.0% | |
| !! | AGATGTTCTGAAAGCTATCC+TGG | - | chr1_2:9417797-9417816 | Msa0054700:intron | 40.0% |
| GCAGAGCTTATGGAAATAAG+CGG | - | chr1_2:9417821-9417840 | Msa0054700:intron | 40.0% | |
| ! | CACGGGTCTATTTTATGGAT+TGG | + | chr1_2:9417943-9417962 | None:intergenic | 40.0% |
| !! | AAGAGCACGGGTCTATTTTA+TGG | + | chr1_2:9417948-9417967 | None:intergenic | 40.0% |
| AAGTCCTATCCTACATCTGT+AGG | - | chr1_2:9418133-9418152 | Msa0054700:intron | 40.0% | |
| !! | GTTTCTGGTAGAGGATATAG+TGG | + | chr1_2:9418554-9418573 | None:intergenic | 40.0% |
| TCTACCAGAAACTCGAATAG+CGG | - | chr1_2:9418562-9418581 | Msa0054700:intron | 40.0% | |
| ! | GGTTATTTCAAGCAGAACAG+TGG | - | chr1_2:9418862-9418881 | Msa0054700:intron | 40.0% |
| !! | GGTGGAGCAAAAGTTTTATG+AGG | - | chr1_2:9418893-9418912 | Msa0054700:intron | 40.0% |
| !! | AAGTTTTATGAGGAGCAGAC+TGG | - | chr1_2:9418903-9418922 | Msa0054700:intron | 40.0% |
| TCGAATTGTTCTTCGGAAGA+TGG | + | chr1_2:9418945-9418964 | None:intergenic | 40.0% | |
| ! | AATTGATTCCAAGGAGTACG+TGG | - | chr1_2:9418968-9418987 | Msa0054700:intron | 40.0% |
| ! | TAGTAGTGGAAGCAGTATCA+AGG | - | chr1_2:9419025-9419044 | Msa0054700:intron | 40.0% |
| ! | TGATGACGATGATGATGATG+AGG | - | chr1_2:9419076-9419095 | Msa0054700:intron | 40.0% |
| !! | GTTCGGAAGGTATTTACCAT+AGG | - | chr1_2:9419443-9419462 | Msa0054700:intron | 40.0% |
| GACTCTTCACATATAACGCA+AGG | + | chr1_2:9419542-9419561 | None:intergenic | 40.0% | |
| CAAAACTCGCTAAAAGAGTG+AGG | + | chr1_2:9419564-9419583 | None:intergenic | 40.0% | |
| CAGTACACTAACAGAAGGTA+GGG | + | chr1_2:9419622-9419641 | None:intergenic | 40.0% | |
| ACAGTACACTAACAGAAGGT+AGG | + | chr1_2:9419623-9419642 | None:intergenic | 40.0% | |
| ! | GTTGATTGTACTGATGAGTG+CGG | - | chr1_2:9419641-9419660 | Msa0054700:intron | 40.0% |
| CCAACAATCATGAAAGAGAC+TGG | + | chr1_2:9419867-9419886 | None:intergenic | 40.0% | |
| CCAGTCTCTTTCATGATTGT+TGG | - | chr1_2:9419864-9419883 | Msa0054700:intron | 40.0% | |
| AGTTAGATTTCCTGAATGGC+AGG | - | chr1_2:9419936-9419955 | Msa0054700:intron | 40.0% | |
| GAATGCACACCTAATGTCTA+TGG | - | chr1_2:9420007-9420026 | Msa0054700:intron | 40.0% | |
| GGCCTTAAGCTTGAATAACT+GGG | - | chr1_2:9420029-9420048 | Msa0054700:intron | 40.0% | |
| CACCCAGTTATTCAAGCTTA+AGG | + | chr1_2:9420034-9420053 | None:intergenic | 40.0% | |
| GCTCATTAGTACAGTGATGA+TGG | + | chr1_2:9420225-9420244 | None:intergenic | 40.0% | |
| ATGTAACGATTGCCATTACG+GGG | + | chr1_2:9420450-9420469 | None:intergenic | 40.0% | |
| GTTACATTCTTAACGGCCTT+GGG | - | chr1_2:9420463-9420482 | Msa0054700:intron | 40.0% | |
| !! | ATGTGGAATAGAGGTGTTAG+GGG | + | chr1_2:9420502-9420521 | None:intergenic | 40.0% |
| !! | CATGTGGAATAGAGGTGTTA+GGG | + | chr1_2:9420503-9420522 | None:intergenic | 40.0% |
| TCTATTCCACATGCTCTGTA+CGG | - | chr1_2:9420510-9420529 | Msa0054700:intron | 40.0% | |
| TGTAGATCGTGAAAATGACG+TGG | - | chr1_2:9420534-9420553 | Msa0054700:intron | 40.0% | |
| GCTGGTTAATCATGAGATGA+AGG | - | chr1_2:9420569-9420588 | Msa0054700:intron | 40.0% | |
| GATCCCAAAAGATGACCTAA+TGG | - | chr1_2:9420601-9420620 | Msa0054700:CDS | 40.0% | |
| TTCTGCAATGCAGAACCATT+AGG | + | chr1_2:9420619-9420638 | None:intergenic | 40.0% | |
| GTTCTGCATTGCAGAAAGAA+GGG | - | chr1_2:9420623-9420642 | Msa0054700:intron | 40.0% | |
| TTCTGCATTGCAGAAAGAAG+GGG | - | chr1_2:9420624-9420643 | Msa0054700:intron | 40.0% | |
| GGGGAAAATCTAGAAGACAA+AGG | - | chr1_2:9420643-9420662 | Msa0054700:intron | 40.0% | |
| CAGGATAGAGATATAATCCC+AGG | + | chr1_2:9420807-9420826 | None:intergenic | 40.0% | |
| CTGGGATTATATCTCTATCC+TGG | - | chr1_2:9420805-9420824 | Msa0054700:intron | 40.0% | |
| ACTACACAAAGTTCTGTTCC+AGG | + | chr1_2:9420826-9420845 | None:intergenic | 40.0% | |
| ! | TTCTCACCATTTGGGTTCTT+AGG | - | chr1_2:9421338-9421357 | Msa0054700:five_prime_UTR | 40.0% |
| AATGAGCACGTTGAAGGAGT+GGG | + | chr1_2:9417133-9417152 | None:intergenic | 45.0% | |
| AGAGAGAATGAGCACGTTGA+AGG | + | chr1_2:9417139-9417158 | None:intergenic | 45.0% | |
| TGTCATTCGATCAGACGTGT+CGG | + | chr1_2:9417437-9417456 | None:intergenic | 45.0% | |
| ! | TTGTGTTGACGTGTCAGTGT+CGG | - | chr1_2:9417519-9417538 | Msa0054700:intron | 45.0% |
| AAGTGTGTGCCAAAAGAGAC+TGG | - | chr1_2:9417646-9417665 | Msa0054700:intron | 45.0% | |
| ! | GAAGTCGTTCCAGTCTCTTT+TGG | + | chr1_2:9417658-9417677 | None:intergenic | 45.0% |
| CGACTTCCAGATTTGAGTGA+AGG | - | chr1_2:9417671-9417690 | Msa0054700:intron | 45.0% | |
| ATTTCCATAAGCTCTGCACC+AGG | + | chr1_2:9417818-9417837 | None:intergenic | 45.0% | |
| AGCATGGTTGAGAAAGAGCA+CGG | + | chr1_2:9417961-9417980 | None:intergenic | 45.0% | |
| ACATTCCTCGTCTTTACTGC+TGG | - | chr1_2:9418069-9418088 | Msa0054700:intron | 45.0% | |
| CAAAACCAGCAGTAAAGACG+AGG | + | chr1_2:9418077-9418096 | None:intergenic | 45.0% | |
| GAGTCCTACAGATGTAGGAT+AGG | + | chr1_2:9418140-9418159 | None:intergenic | 45.0% | |
| CAAATAGAGCAAGCCGCATA+GGG | - | chr1_2:9418297-9418316 | Msa0054700:intron | 45.0% | |
| AAATAGAGCAAGCCGCATAG+GGG | - | chr1_2:9418298-9418317 | Msa0054700:intron | 45.0% | |
| TAGGGGTTGGAATGAGTCAA+CGG | - | chr1_2:9418315-9418334 | Msa0054700:intron | 45.0% | |
| !! | GCTATTCGAGTTTCTGGTAG+AGG | + | chr1_2:9418563-9418582 | None:intergenic | 45.0% |
| GGTTTCAGTTTACATTGCCG+AGG | - | chr1_2:9418697-9418716 | Msa0054700:intron | 45.0% | |
| CAAAACGAAGACAACAGCCT+CGG | + | chr1_2:9418717-9418736 | None:intergenic | 45.0% | |
| AGCAGAACAGTGGCAAGATA+TGG | - | chr1_2:9418872-9418891 | Msa0054700:intron | 45.0% | |
| AGAACAGTGGCAAGATATGG+TGG | - | chr1_2:9418875-9418894 | Msa0054700:intron | 45.0% | |
| CAATTTCTCCACGTACTCCT+TGG | + | chr1_2:9418979-9418998 | None:intergenic | 45.0% | |
| AGTACGTGGAGAAATTGCCA+GGG | - | chr1_2:9418982-9419001 | Msa0054700:intron | 45.0% | |
| !! | GTTGTTGGTGGTAGTAGTAG+TGG | - | chr1_2:9419011-9419030 | Msa0054700:intron | 45.0% |
| ! | AGTTCTGATATGTGAGCCTG+AGG | - | chr1_2:9419270-9419289 | Msa0054700:intron | 45.0% |
| GTTCTGATATGTGAGCCTGA+GGG | - | chr1_2:9419271-9419290 | Msa0054700:intron | 45.0% | |
| ! | CATTCTAGTTGCAAGCCCTA+TGG | + | chr1_2:9419462-9419481 | None:intergenic | 45.0% |
| ATAAGGTGAACCTGCCATTC+AGG | + | chr1_2:9419949-9419968 | None:intergenic | 45.0% | |
| GCTTAAGGCCCATAGACATT+AGG | + | chr1_2:9420019-9420038 | None:intergenic | 45.0% | |
| GGGCCTTAAGCTTGAATAAC+TGG | - | chr1_2:9420028-9420047 | Msa0054700:intron | 45.0% | |
| AGGCATGGAATAAGGCAACA+AGG | - | chr1_2:9420092-9420111 | Msa0054700:intron | 45.0% | |
| GAATAAGGCAACAAGGTCAC+TGG | - | chr1_2:9420099-9420118 | Msa0054700:intron | 45.0% | |
| !! | AACAAGGTCACTGGTTCTAG+TGG | - | chr1_2:9420108-9420127 | Msa0054700:intron | 45.0% |
| !! | ATTTGATGAGTGGTTCTGGG+AGG | - | chr1_2:9420147-9420166 | Msa0054700:intron | 45.0% |
| TTTCAGTTATGGACGGAGAG+TGG | - | chr1_2:9420349-9420368 | Msa0054700:intron | 45.0% | |
| CGTTACATTCTTAACGGCCT+TGG | - | chr1_2:9420462-9420481 | Msa0054700:intron | 45.0% | |
| !! | GCATGTGGAATAGAGGTGTT+AGG | + | chr1_2:9420504-9420523 | None:intergenic | 45.0% |
| GTACAGAGCATGTGGAATAG+AGG | + | chr1_2:9420511-9420530 | None:intergenic | 45.0% | |
| CTCATGATTAACCAGCGTGT+AGG | + | chr1_2:9420565-9420584 | None:intergenic | 45.0% | |
| GGTTCTGCATTGCAGAAAGA+AGG | - | chr1_2:9420622-9420641 | Msa0054700:intron | 45.0% | |
| ! | AGGCCCCAAGTATGATTTTC+AGG | + | chr1_2:9420787-9420806 | None:intergenic | 45.0% |
| TGAAAATCATACTTGGGGCC+TGG | - | chr1_2:9420786-9420805 | Msa0054700:intron | 45.0% | |
| GAAAATCATACTTGGGGCCT+GGG | - | chr1_2:9420787-9420806 | Msa0054700:intron | 45.0% | |
| !! | TTCAGCGTCCTTGTTGCTTT+GGG | - | chr1_2:9420993-9421012 | Msa0054700:intron | 45.0% |
| TACAAACAGCAGCTCATAGC+TGG | + | chr1_2:9421112-9421131 | None:intergenic | 45.0% | |
| ! | TATTGCTTATGGCTTGCGAC+TGG | - | chr1_2:9421145-9421164 | Msa0054700:CDS | 45.0% |
| ! | ATTGCTTATGGCTTGCGACT+GGG | - | chr1_2:9421146-9421165 | Msa0054700:CDS | 45.0% |
| CATGAAACTCAAACGCAGAC+AGG | + | chr1_2:9421304-9421323 | None:intergenic | 45.0% | |
| ! | CTGTCTGCGTTTGAGTTTCA+TGG | - | chr1_2:9421302-9421321 | Msa0054700:exon | 45.0% |
| ! | CACCATTTGGGTTCTTAGGT+TGG | - | chr1_2:9421342-9421361 | Msa0054700:five_prime_UTR | 45.0% |
| !!! | TTTTAAAAATTTGTTATAAA+TGG | - | chr1_2:9418464-9418483 | Msa0054700:intron | 5.0% |
| GATCAGGGTCTGATAGAGCA+AGG | + | chr1_2:9417097-9417116 | None:intergenic | 50.0% | |
| !! | GGAGTGTCGCAAGATGATCA+GGG | + | chr1_2:9417112-9417131 | None:intergenic | 50.0% |
| GAATGAGCACGTTGAAGGAG+TGG | + | chr1_2:9417134-9417153 | None:intergenic | 50.0% | |
| GGTAGAAGTGAGTTTGGCGA+GGG | + | chr1_2:9417165-9417184 | None:intergenic | 50.0% | |
| CTATCCTGGTGCAGAGCTTA+TGG | - | chr1_2:9417811-9417830 | Msa0054700:intron | 50.0% | |
| ! | GCATGGTTGAGAAAGAGCAC+GGG | + | chr1_2:9417960-9417979 | None:intergenic | 50.0% |
| ! | ATGCGGCTTGCTCTATTTGC+AGG | + | chr1_2:9418296-9418315 | None:intergenic | 50.0% |
| GCAAATAGAGCAAGCCGCAT+AGG | - | chr1_2:9418296-9418315 | Msa0054700:intron | 50.0% | |
| GACTCATTCCAACCCCTATG+CGG | + | chr1_2:9418313-9418332 | None:intergenic | 50.0% | |
| GAGGATATAGTGGCAGTAGC+AGG | + | chr1_2:9418544-9418563 | None:intergenic | 50.0% | |
| ! | AGGAGCAGACTGGTCAAAAG+AGG | - | chr1_2:9418913-9418932 | Msa0054700:intron | 50.0% |
| GAGTACGTGGAGAAATTGCC+AGG | - | chr1_2:9418981-9419000 | Msa0054700:intron | 50.0% | |
| GTACGTGGAGAAATTGCCAG+GGG | - | chr1_2:9418983-9419002 | Msa0054700:intron | 50.0% | |
| ! | ACGACCTTTCAGGTCGAAGT+TGG | - | chr1_2:9420374-9420393 | Msa0054700:intron | 50.0% |
| GTGTCCAACTTCGACCTGAA+AGG | + | chr1_2:9420381-9420400 | None:intergenic | 50.0% | |
| ! | TGGACACTTGATGACCGTTC+AGG | - | chr1_2:9420394-9420413 | Msa0054700:intron | 50.0% |
| GATGACCGTTCAGGTCGTAA+AGG | - | chr1_2:9420403-9420422 | Msa0054700:intron | 50.0% | |
| !! | GTTGGCCTTTACGACCTGAA+CGG | + | chr1_2:9420411-9420430 | None:intergenic | 50.0% |
| GGATAGGAGTTGCAGTAGGT+TGG | + | chr1_2:9420429-9420448 | None:intergenic | 50.0% | |
| TGCAACTCCTATCCCCGTAA+TGG | - | chr1_2:9420435-9420454 | Msa0054700:intron | 50.0% | |
| ACGATTGCCATTACGGGGAT+AGG | + | chr1_2:9420445-9420464 | None:intergenic | 50.0% | |
| CTACATCCGTACAGAGCATG+TGG | + | chr1_2:9420519-9420538 | None:intergenic | 50.0% | |
| ! | GTTCAGCGTCCTTGTTGCTT+TGG | - | chr1_2:9420992-9421011 | Msa0054700:intron | 50.0% |
| !! | TCAGCGTCCTTGTTGCTTTG+GGG | - | chr1_2:9420994-9421013 | Msa0054700:intron | 50.0% |
| ! | TTGCTTATGGCTTGCGACTG+GGG | - | chr1_2:9421147-9421166 | Msa0054700:CDS | 50.0% |
| !! | GGGAGTGTCGCAAGATGATC+AGG | + | chr1_2:9417113-9417132 | None:intergenic | 55.0% |
| GGGTAGAAGTGAGTTTGGCG+AGG | + | chr1_2:9417166-9417185 | None:intergenic | 55.0% | |
| !! | ACATGTTCGGTGTCCGACAC+TGG | - | chr1_2:9417454-9417473 | Msa0054700:intron | 55.0% |
| GTACGATGTCGTGCCAGTGT+CGG | + | chr1_2:9417470-9417489 | None:intergenic | 55.0% | |
| !! | ACTCTGTTGGCTTGCCCCAT+AGG | - | chr1_2:9418797-9418816 | Msa0054700:intron | 55.0% |
| TTGCCAGGGGAGGATGTTGT+TGG | - | chr1_2:9418996-9419015 | Msa0054700:intron | 55.0% | |
| GAGAGTGGAGACGACCTTTC+AGG | - | chr1_2:9420364-9420383 | Msa0054700:intron | 55.0% | |
| ACGGGGATAGGAGTTGCAGT+AGG | + | chr1_2:9420433-9420452 | None:intergenic | 55.0% | |
| ACGTGGCTTATCCTACACGC+TGG | - | chr1_2:9420551-9420570 | Msa0054700:intron | 55.0% | |
| ACACGAGACGCGTTCTCCTT+TGG | + | chr1_2:9420713-9420732 | None:intergenic | 55.0% | |
| TGAGTCGCCCCAAAGCAACA+AGG | + | chr1_2:9421004-9421023 | None:intergenic | 55.0% | |
| TGGGGCGACTCATCAAAGCT+TGG | - | chr1_2:9421012-9421031 | Msa0054700:intron | 55.0% | |
| AGAGCAAGCCGCATAGGGGT+TGG | - | chr1_2:9418302-9418321 | Msa0054700:intron | 60.0% | |
| ! | GCGGCCGCTATTCGAGTTTC+TGG | + | chr1_2:9418569-9418588 | None:intergenic | 60.0% |
| CGTGGAGAAATTGCCAGGGG+AGG | - | chr1_2:9418986-9419005 | Msa0054700:intron | 60.0% | |
| CCACCAACAACATCCTCCCC+TGG | + | chr1_2:9419002-9419021 | None:intergenic | 60.0% | |
| CCAGGGGAGGATGTTGTTGG+TGG | - | chr1_2:9418999-9419018 | Msa0054700:intron | 60.0% | |
| ! | GAGGTGTTAGGGGCCACAGA+AGG | + | chr1_2:9420492-9420511 | None:intergenic | 60.0% |
| CGGCCTTGGGACTCCTTCTG+TGG | - | chr1_2:9420476-9420495 | Msa0054700:intron | 65.0% | |
| GGGCCACAGAAGGAGTCCCA+AGG | + | chr1_2:9420482-9420501 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 9416917 | 9421365 | 9416917 | ID=Msa0054700;Name=Msa0054700 |
| chr1_2 | mRNA | 9416917 | 9421365 | 9416917 | ID=Msa0054700-mRNA-1;Parent=Msa0054700;Name=Msa0054700-mRNA-1;_AED=0.13;_eAED=0.13;_QI=61|0.5|0.4|1|0.5|0.8|5|328|154 |
| chr1_2 | exon | 9416917 | 9417326 | 9416917 | ID=Msa0054700-mRNA-1:exon:3493;Parent=Msa0054700-mRNA-1 |
| chr1_2 | exon | 9419300 | 9419405 | 9419300 | ID=Msa0054700-mRNA-1:exon:3492;Parent=Msa0054700-mRNA-1 |
| chr1_2 | exon | 9420590 | 9420639 | 9420590 | ID=Msa0054700-mRNA-1:exon:3491;Parent=Msa0054700-mRNA-1 |
| chr1_2 | exon | 9420948 | 9420957 | 9420948 | ID=Msa0054700-mRNA-1:exon:3490;Parent=Msa0054700-mRNA-1 |
| chr1_2 | exon | 9421088 | 9421365 | 9421088 | ID=Msa0054700-mRNA-1:exon:3489;Parent=Msa0054700-mRNA-1 |
| chr1_2 | five_prime_UTR | 9421305 | 9421365 | 9421305 | ID=Msa0054700-mRNA-1:five_prime_utr;Parent=Msa0054700-mRNA-1 |
| chr1_2 | CDS | 9421088 | 9421304 | 9421088 | ID=Msa0054700-mRNA-1:cds;Parent=Msa0054700-mRNA-1 |
| chr1_2 | CDS | 9420948 | 9420957 | 9420948 | ID=Msa0054700-mRNA-1:cds;Parent=Msa0054700-mRNA-1 |
| chr1_2 | CDS | 9420590 | 9420639 | 9420590 | ID=Msa0054700-mRNA-1:cds;Parent=Msa0054700-mRNA-1 |
| chr1_2 | CDS | 9419300 | 9419405 | 9419300 | ID=Msa0054700-mRNA-1:cds;Parent=Msa0054700-mRNA-1 |
| chr1_2 | CDS | 9417245 | 9417326 | 9417245 | ID=Msa0054700-mRNA-1:cds;Parent=Msa0054700-mRNA-1 |
| chr1_2 | three_prime_UTR | 9416917 | 9417244 | 9416917 | ID=Msa0054700-mRNA-1:three_prime_utr;Parent=Msa0054700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
