Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0661160 | XP_003588865.1 | 85.350 | 157 | 5 | 2 | 1 | 139 | 1 | 157 | 1.27e-83 | 255 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0054700 | Msa0661160 | 0.959628 | 1.188110e-117 | -8.615850e-47 |
| Msa0661160 | Msa0891740 | 0.836033 | 1.185973e-56 | -8.615850e-47 |
| Msa0661160 | Msa0910990 | 0.853363 | 2.511014e-61 | -8.615850e-47 |
| Msa0661160 | Msa0956530 | 0.825399 | 4.788660e-54 | -8.615850e-47 |
| Msa0661160 | Msa1359680 | 0.894820 | 1.719985e-75 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0661160 | MtrunA17_Chr1g0150121 | 85.350 | 157 | 5 | 2 | 1 | 139 | 1 | 157 | 1.16e-87 | 255 |
| Msa0661160 | MtrunA17_Chr3g0136861 | 32.973 | 185 | 70 | 5 | 1 | 132 | 1 | 184 | 2.74e-16 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 58 sgRNAs with CRISPR-Local
Find 291 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTCTATTGTTGTTGATTC+TGG | 0.208831 | 4_3:+72383350 | None:intergenic |
| TTCTCACCATTTGGGTTCTT+AGG | 0.223638 | 4_3:-72379031 | Msa0661160:three_prime_UTR |
| CTGTCTGCGTTTGAGTTTCA+TGG | 0.247458 | 4_3:-72379067 | Msa0661160:three_prime_UTR |
| TGAAATACGAACATTCAAAA+AGG | 0.266282 | 4_3:+72383183 | None:intergenic |
| TTCAGCGTCCTTGTTGCTTT+GGG | 0.275461 | 4_3:-72379376 | Msa0661160:CDS |
| AGATGAATGCTTATTGCTTA+TGG | 0.285315 | 4_3:-72379235 | Msa0661160:three_prime_UTR |
| GTGATGCGTCAATAATTAAA+TGG | 0.297952 | 4_3:-72379335 | Msa0661160:CDS |
| AATTTAATGTTCTCACCATT+TGG | 0.301117 | 4_3:-72379040 | Msa0661160:three_prime_UTR |
| GGAATTCAGGTAATTGAGTT+TGG | 0.301722 | 4_3:+72383294 | None:intergenic |
| TATTGCTTATGGCTTGCGAC+TGG | 0.317936 | 4_3:-72379224 | Msa0661160:three_prime_UTR |
| GAAGTCGTTCCAGTCTCTTT+TGG | 0.333344 | 4_3:+72382714 | None:intergenic |
| GTCAATAATTAAATGGCAAC+TGG | 0.334356 | 4_3:-72379328 | Msa0661160:CDS |
| ATTTAATGTTCTCACCATTT+GGG | 0.340283 | 4_3:-72379039 | Msa0661160:three_prime_UTR |
| TCTGATAGAGCAAGGAATTC+AGG | 0.352555 | 4_3:+72383281 | None:intergenic |
| CACCATTTGGGTTCTTAGGT+TGG | 0.364969 | 4_3:-72379027 | Msa0661160:three_prime_UTR |
| AATATACCTTCACTCAAATC+TGG | 0.367127 | 4_3:+72382692 | None:intergenic |
| GTCACGTTCTCTGTTTCATT+TGG | 0.368600 | 4_3:+72383380 | None:intergenic |
| CTTTCTCTCTTCACTAGAAT+AGG | 0.378897 | 4_3:+72383421 | None:intergenic |
| AGAGAGAAAGAGAAAGAATA+TGG | 0.380703 | 4_3:-72383408 | Msa0661160:exon |
| GGGAGTGTCGCAAGATGATC+AGG | 0.382472 | 4_3:+72383257 | None:intergenic |
| GTTCAGCGTCCTTGTTGCTT+TGG | 0.391508 | 4_3:-72379377 | Msa0661160:CDS |
| ATTGCTTATGGCTTGCGACT+GGG | 0.406029 | 4_3:-72379223 | Msa0661160:three_prime_UTR |
| CAAAAGTCATTATCTAACTT+TGG | 0.413615 | 4_3:+72379129 | None:intergenic |
| AGAGAGAATGAGCACGTTGA+AGG | 0.421510 | 4_3:+72383231 | None:intergenic |
| TCGAATTGTTCTTCGGAAGA+TGG | 0.432800 | 4_3:+72381429 | None:intergenic |
| GAGTACGTGGAGAAATTGCC+AGG | 0.434070 | 4_3:-72381390 | Msa0661160:CDS |
| TACAAACAGCAGCTCATAGC+TGG | 0.435981 | 4_3:+72379260 | None:intergenic |
| TCAACTACGTATATATTGTA+TGG | 0.445908 | 4_3:-72379154 | Msa0661160:three_prime_UTR |
| CAATTTCTCCACGTACTCCT+TGG | 0.446252 | 4_3:+72381395 | None:intergenic |
| AGCAGAACAGTGGCAAGATA+TGG | 0.460848 | 4_3:-72381499 | Msa0661160:intron |
| AATTTGATCGAATTGTTCTT+CGG | 0.466862 | 4_3:+72381422 | None:intergenic |
| AAGTGTGTGCCAAAAGAGAC+TGG | 0.467228 | 4_3:-72382723 | Msa0661160:CDS |
| TTGCCAGGGGAGGATGTTGT+TGG | 0.491487 | 4_3:-72381375 | Msa0661160:intron |
| TACAATATATACGTAGTTGA+AGG | 0.499424 | 4_3:+72379157 | None:intergenic |
| ATTCGATCAAATTGATTCCA+AGG | 0.503194 | 4_3:-72381412 | Msa0661160:CDS |
| TCAGCGTCCTTGTTGCTTTG+GGG | 0.510939 | 4_3:-72379375 | Msa0661160:CDS |
| GAATGAGCACGTTGAAGGAG+TGG | 0.521754 | 4_3:+72383236 | None:intergenic |
| GGCCAACCTAAGAACCCAAA+TGG | 0.527569 | 4_3:+72379025 | None:intergenic |
| TGCAGTATATGTGAACTACA+TGG | 0.528259 | 4_3:-72379418 | Msa0661160:intron |
| GGTAGAAGTGAGTTTGGCGA+GGG | 0.533143 | 4_3:+72383205 | None:intergenic |
| TTGCTTATGGCTTGCGACTG+GGG | 0.534371 | 4_3:-72379222 | Msa0661160:three_prime_UTR |
| AGGAGCAGACTGGTCAAAAG+AGG | 0.536792 | 4_3:-72381458 | Msa0661160:CDS |
| CATGAAACTCAAACGCAGAC+AGG | 0.542569 | 4_3:+72379068 | None:intergenic |
| AATGAGCACGTTGAAGGAGT+GGG | 0.547922 | 4_3:+72383237 | None:intergenic |
| GGGTAGAAGTGAGTTTGGCG+AGG | 0.549628 | 4_3:+72383204 | None:intergenic |
| TGGGGCGACTCATCAAAGCT+TGG | 0.551107 | 4_3:-72379357 | Msa0661160:CDS |
| CGACTTCCAGATTTGAGTGA+AGG | 0.560270 | 4_3:-72382698 | Msa0661160:intron |
| CCACCAACAACATCCTCCCC+TGG | 0.586657 | 4_3:+72381372 | None:intergenic |
| AGAACAGTGGCAAGATATGG+TGG | 0.633543 | 4_3:-72381496 | Msa0661160:CDS |
| GGTTATTTCAAGCAGAACAG+TGG | 0.634126 | 4_3:-72381509 | Msa0661160:intron |
| GATCAGGGTCTGATAGAGCA+AGG | 0.637548 | 4_3:+72383273 | None:intergenic |
| CGTGGAGAAATTGCCAGGGG+AGG | 0.640583 | 4_3:-72381385 | Msa0661160:CDS |
| AATTGATTCCAAGGAGTACG+TGG | 0.643895 | 4_3:-72381403 | Msa0661160:CDS |
| AGTACGTGGAGAAATTGCCA+GGG | 0.646997 | 4_3:-72381389 | Msa0661160:CDS |
| TCAATAATTAAATGGCAACT+GGG | 0.658227 | 4_3:-72379327 | Msa0661160:CDS |
| GGAGTGTCGCAAGATGATCA+GGG | 0.666656 | 4_3:+72383258 | None:intergenic |
| TGAGTCGCCCCAAAGCAACA+AGG | 0.677678 | 4_3:+72379368 | None:intergenic |
| GTACGTGGAGAAATTGCCAG+GGG | 0.738965 | 4_3:-72381388 | Msa0661160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAAAGTTACAATTTTTGA+AGG | + | chr4_3:72379339-72379358 | None:intergenic | 15.0% |
| !!! | TGTTGTTTTTTTTTTTTTTC+TGG | - | chr4_3:72379404-72379423 | Msa0661160:CDS | 15.0% |
| !! | TAATAAATATATCTCAAAGA+TGG | + | chr4_3:72381504-72381523 | None:intergenic | 15.0% |
| !!! | TTTTGAAGGAAAACATTAAT+GGG | + | chr4_3:72379325-72379344 | None:intergenic | 20.0% |
| !!! | TTTTTGAAGGAAAACATTAA+TGG | + | chr4_3:72379326-72379345 | None:intergenic | 20.0% |
| !! | TGTTGCATACAAATAAAAAA+GGG | - | chr4_3:72380459-72380478 | Msa0661160:intron | 20.0% |
| !!! | GCTATCTTAGTTTTTTTTTA+GGG | + | chr4_3:72380704-72380723 | None:intergenic | 20.0% |
| !! | ATGTTAAGAATTTGATTGAA+TGG | - | chr4_3:72380852-72380871 | Msa0661160:intron | 20.0% |
| !! | TGTTAAGAATTTGATTGAAT+GGG | - | chr4_3:72380853-72380872 | Msa0661160:intron | 20.0% |
| !! | CATGTGTTTGAAAAAAAAAA+TGG | - | chr4_3:72380946-72380965 | Msa0661160:intron | 20.0% |
| !! | CTACCAAAATACATAAAATA+TGG | + | chr4_3:72381281-72381300 | None:intergenic | 20.0% |
| !! | TTATGATCTCTATCTAATTT+AGG | - | chr4_3:72381311-72381330 | Msa0661160:intron | 20.0% |
| !! | TATGATCTCTATCTAATTTA+GGG | - | chr4_3:72381312-72381331 | Msa0661160:intron | 20.0% |
| !! | ACATAATTAGTTAATTCGTT+TGG | - | chr4_3:72381813-72381832 | Msa0661160:intron | 20.0% |
| !!! | AAAGGTAAAATTTGAGTTAT+TGG | - | chr4_3:72382012-72382031 | Msa0661160:intron | 20.0% |
| !! | ATAAATTTCCATTGTAGTTA+TGG | - | chr4_3:72382093-72382112 | Msa0661160:intron | 20.0% |
| !!! | AAGTATAGTTATTTCAGTTA+TGG | - | chr4_3:72382446-72382465 | Msa0661160:intron | 20.0% |
| !! | GTAAACAAAGCAATTATATA+TGG | + | chr4_3:72382972-72382991 | None:intergenic | 20.0% |
| !!! | TATATAATTGCTTTGTTTAC+TGG | - | chr4_3:72382972-72382991 | Msa0661160:intron | 20.0% |
| !!! | CCTATAAATATTCTAGATTT+TGG | + | chr4_3:72383004-72383023 | None:intergenic | 20.0% |
| !!! | CCAAAATCTAGAATATTTAT+AGG | - | chr4_3:72383001-72383020 | Msa0661160:intron | 20.0% |
| ! | GAAATACGAACATTCAAAAA+GGG | + | chr4_3:72379295-72379314 | None:intergenic | 25.0% |
| ! | TGAAATACGAACATTCAAAA+AGG | + | chr4_3:72379296-72379315 | None:intergenic | 25.0% |
| ! | ACAACAACAAAAACGAAAAT+GGG | + | chr4_3:72379387-72379406 | None:intergenic | 25.0% |
| ! | AACAACAACAAAAACGAAAA+TGG | + | chr4_3:72379388-72379407 | None:intergenic | 25.0% |
| ! | TGAATGTAATCATATGTGTA+CGG | + | chr4_3:72379594-72379613 | None:intergenic | 25.0% |
| !!! | TTGTTCAAGTTTTGACATTT+GGG | - | chr4_3:72379675-72379694 | Msa0661160:intron | 25.0% |
| !! | CAAACTATTTTCATATAAGC+TGG | - | chr4_3:72379880-72379899 | Msa0661160:intron | 25.0% |
| !! | TTATCATAAGTCCTTTTCAT+TGG | - | chr4_3:72380087-72380106 | Msa0661160:intron | 25.0% |
| ! | ACACTTAGAATGAAATATCA+TGG | + | chr4_3:72380138-72380157 | None:intergenic | 25.0% |
| ! | GTGTTGCATACAAATAAAAA+AGG | - | chr4_3:72380458-72380477 | Msa0661160:intron | 25.0% |
| ! | CATACAAATAAAAAAGGGAA+TGG | - | chr4_3:72380464-72380483 | Msa0661160:intron | 25.0% |
| !!! | CGCTATCTTAGTTTTTTTTT+AGG | + | chr4_3:72380705-72380724 | None:intergenic | 25.0% |
| ! | AATTTGATCGAATTGTTCTT+CGG | + | chr4_3:72381057-72381076 | None:intergenic | 25.0% |
| ! | AATAACAGAAAACAGAGTTT+GGG | + | chr4_3:72381227-72381246 | None:intergenic | 25.0% |
| ! | CCAAAATACATAAAATATGG+AGG | + | chr4_3:72381278-72381297 | None:intergenic | 25.0% |
| !! | CCTCCATATTTTATGTATTT+TGG | - | chr4_3:72381275-72381294 | Msa0661160:intron | 25.0% |
| !!! | ATTGAGTTTTAGCAAAAGTT+CGG | - | chr4_3:72381534-72381553 | Msa0661160:intron | 25.0% |
| ! | TAATGAGAAAATGAAAGCTA+AGG | + | chr4_3:72381872-72381891 | None:intergenic | 25.0% |
| !!! | TTTTGTTTAAAGCAGTTTAG+TGG | + | chr4_3:72381904-72381923 | None:intergenic | 25.0% |
| !! | ATTGTTGGTTGAATTATTCA+AGG | - | chr4_3:72381987-72382006 | Msa0661160:intron | 25.0% |
| !! | TTGTTGGTTGAATTATTCAA+GGG | - | chr4_3:72381988-72382007 | Msa0661160:intron | 25.0% |
| ! | AAATGTAATGATAAAGCTTG+TGG | - | chr4_3:72382281-72382300 | Msa0661160:intron | 25.0% |
| ! | AATGTAATGATAAAGCTTGT+GGG | - | chr4_3:72382282-72382301 | Msa0661160:intron | 25.0% |
| ! | CTACTCATTATTAATTGAGT+TGG | + | chr4_3:72382374-72382393 | None:intergenic | 25.0% |
| ! | CAACTCAATTAATAATGAGT+AGG | - | chr4_3:72382372-72382391 | Msa0661160:intron | 25.0% |
| !! | ATAGTTATTTCAGTTATGGA+CGG | - | chr4_3:72382450-72382469 | Msa0661160:intron | 25.0% |
| ! | TCAATAATTAAATGGCAACT+GGG | - | chr4_3:72383149-72383168 | Msa0661160:intron | 25.0% |
| ! | TACAATATATACGTAGTTGA+AGG | + | chr4_3:72383322-72383341 | None:intergenic | 25.0% |
| ! | TCAACTACGTATATATTGTA+TGG | - | chr4_3:72383322-72383341 | Msa0661160:CDS | 25.0% |
| ! | CAAAAGTCATTATCTAACTT+TGG | + | chr4_3:72383350-72383369 | None:intergenic | 25.0% |
| ! | AATTTAATGTTCTCACCATT+TGG | - | chr4_3:72383436-72383455 | Msa0661160:five_prime_UTR | 25.0% |
| ! | ATTTAATGTTCTCACCATTT+GGG | - | chr4_3:72383437-72383456 | Msa0661160:five_prime_UTR | 25.0% |
| AGAGAGAAAGAGAAAGAATA+TGG | - | chr4_3:72379068-72379087 | Msa0661160:three_prime_UTR | 30.0% | |
| !! | GATTCTATTGTTGTTGATTC+TGG | + | chr4_3:72379129-72379148 | None:intergenic | 30.0% |
| ! | ATTTAAAGGCATGGTCATTT+GGG | + | chr4_3:72379460-72379479 | None:intergenic | 30.0% |
| ! | CTAAAGGGTTCTTTTCTTTT+GGG | - | chr4_3:72379493-72379512 | Msa0661160:intron | 30.0% |
| !! | GTTGTTCAAGTTTTGACATT+TGG | - | chr4_3:72379674-72379693 | Msa0661160:intron | 30.0% |
| !! | TGTTCAAGTTTTGACATTTG+GGG | - | chr4_3:72379676-72379695 | Msa0661160:intron | 30.0% |
| ! | GATTTTGTGTTCAACAGAAT+AGG | - | chr4_3:72379728-72379747 | Msa0661160:intron | 30.0% |
| AATATACCTTCACTCAAATC+TGG | + | chr4_3:72379787-72379806 | None:intergenic | 30.0% | |
| GTTACTTATCCAAACAAACA+GGG | + | chr4_3:72379832-72379851 | None:intergenic | 30.0% | |
| AGTTACTTATCCAAACAAAC+AGG | + | chr4_3:72379833-72379852 | None:intergenic | 30.0% | |
| AAAAGGACTTATGATAAGCA+TGG | + | chr4_3:72380084-72380103 | None:intergenic | 30.0% | |
| TAATAGCTCAACCAATGAAA+AGG | + | chr4_3:72380101-72380120 | None:intergenic | 30.0% | |
| CATAAAAGAAAGACAGAACT+TGG | + | chr4_3:72380276-72380295 | None:intergenic | 30.0% | |
| ATAATATCAGTAGTAAGCTG+TGG | - | chr4_3:72380327-72380346 | Msa0661160:intron | 30.0% | |
| TGAGTCAACGGTATATAAAA+AGG | - | chr4_3:72380434-72380453 | Msa0661160:intron | 30.0% | |
| ACAAATAAAAAAGGGAATGG+AGG | - | chr4_3:72380467-72380486 | Msa0661160:intron | 30.0% | |
| !!! | GTTTTTTTTTAGGGCAATAG+CGG | + | chr4_3:72380695-72380714 | None:intergenic | 30.0% |
| !! | AGATTTTGAGGGAAAAAACT+GGG | + | chr4_3:72380742-72380761 | None:intergenic | 30.0% |
| ! | TATAGCATAGCAGATTTTGA+GGG | + | chr4_3:72380753-72380772 | None:intergenic | 30.0% |
| AAGAATTTGATTGAATGGGT+TGG | - | chr4_3:72380857-72380876 | Msa0661160:intron | 30.0% | |
| !! | CTTTTTGTTTAACACTCTGT+TGG | - | chr4_3:72380891-72380910 | Msa0661160:intron | 30.0% |
| TCAAAATGAAAGACACGTAT+GGG | + | chr4_3:72380922-72380941 | None:intergenic | 30.0% | |
| TTCAAAATGAAAGACACGTA+TGG | + | chr4_3:72380923-72380942 | None:intergenic | 30.0% | |
| ! | ATTCGATCAAATTGATTCCA+AGG | - | chr4_3:72381064-72381083 | Msa0661160:intron | 30.0% |
| AAACAGAGTTTGGGTAATAA+GGG | + | chr4_3:72381218-72381237 | None:intergenic | 30.0% | |
| AAAACAGAGTTTGGGTAATA+AGG | + | chr4_3:72381219-72381238 | None:intergenic | 30.0% | |
| CAATAACAGAAAACAGAGTT+TGG | + | chr4_3:72381228-72381247 | None:intergenic | 30.0% | |
| GCAACGAAGTTAAAAATCAT+AGG | - | chr4_3:72381441-72381460 | Msa0661160:CDS | 30.0% | |
| GGTTATATGAGATTTGAATG+TGG | - | chr4_3:72381462-72381481 | Msa0661160:CDS | 30.0% | |
| TATATGAGATTTGAATGTGG+AGG | - | chr4_3:72381465-72381484 | Msa0661160:CDS | 30.0% | |
| TAATACGATTATACGACTGA+AGG | - | chr4_3:72381614-72381633 | Msa0661160:intron | 30.0% | |
| AATACGATTATACGACTGAA+GGG | - | chr4_3:72381615-72381634 | Msa0661160:intron | 30.0% | |
| !! | TAGCGAGTTTTGATGTTTAT+CGG | - | chr4_3:72381680-72381699 | Msa0661160:intron | 30.0% |
| TTCATTTAGCAAGTGATCTT+AGG | - | chr4_3:72381846-72381865 | Msa0661160:intron | 30.0% | |
| GTTGAATTATTCAAGGGAAA+AGG | - | chr4_3:72381994-72382013 | Msa0661160:intron | 30.0% | |
| TACTAGTTAGATTTCCTGAA+TGG | - | chr4_3:72382040-72382059 | Msa0661160:intron | 30.0% | |
| TCAAGATCCTTACACTAATA+AGG | + | chr4_3:72382074-72382093 | None:intergenic | 30.0% | |
| GTGTATAAGTAGAACAAAAG+AGG | - | chr4_3:72382180-72382199 | Msa0661160:intron | 30.0% | |
| ! | AACAAAAGAGGCATGAAATA+AGG | - | chr4_3:72382192-72382211 | Msa0661160:intron | 30.0% |
| GTGTTTGATTATTTGATGAG+TGG | - | chr4_3:72382245-72382264 | Msa0661160:intron | 30.0% | |
| ATTATTTGATGAGTGGTTCT+GGG | - | chr4_3:72382252-72382271 | Msa0661160:intron | 30.0% | |
| ! | TGAACTCTTAATTTAGCCTT+TGG | - | chr4_3:72382401-72382420 | Msa0661160:intron | 30.0% |
| ! | AATTTAGCCTTTGGTTATAG+AGG | - | chr4_3:72382410-72382429 | Msa0661160:intron | 30.0% |
| AATTGATCCTCTATAACCAA+AGG | + | chr4_3:72382420-72382439 | None:intergenic | 30.0% | |
| AATCTAGAAGACAAAGGATA+TGG | - | chr4_3:72382757-72382776 | Msa0661160:intron | 30.0% | |
| ATCTTTAGATCTAAACCTGA+AGG | - | chr4_3:72382780-72382799 | Msa0661160:intron | 30.0% | |
| !!! | CTTTTAAAACAAAAGCCTTC+AGG | + | chr4_3:72382798-72382817 | None:intergenic | 30.0% |
| !!! | GCTTTTGTTTTAAAAGCCAA+AGG | - | chr4_3:72382802-72382821 | Msa0661160:intron | 30.0% |
| TTAGCCTGAAAATCATACTT+GGG | - | chr4_3:72382888-72382907 | Msa0661160:intron | 30.0% | |
| GTGATGCGTCAATAATTAAA+TGG | - | chr4_3:72383141-72383160 | Msa0661160:intron | 30.0% | |
| GTCAATAATTAAATGGCAAC+TGG | - | chr4_3:72383148-72383167 | Msa0661160:intron | 30.0% | |
| AGATGAATGCTTATTGCTTA+TGG | - | chr4_3:72383241-72383260 | Msa0661160:CDS | 30.0% | |
| !! | GGTTAACTATGCTTTTTAAC+TGG | - | chr4_3:72383275-72383294 | Msa0661160:CDS | 30.0% |
| !!! | GAATAGGTTTTGAGTCAACA+CGG | + | chr4_3:72379042-72379061 | None:intergenic | 35.0% |
| CTTTCTCTCTTCACTAGAAT+AGG | + | chr4_3:72379058-72379077 | None:intergenic | 35.0% | |
| GGAATTCAGGTAATTGAGTT+TGG | + | chr4_3:72379185-72379204 | None:intergenic | 35.0% | |
| AAAAAGGGTAGAAGTGAGTT+TGG | + | chr4_3:72379280-72379299 | None:intergenic | 35.0% | |
| ! | GATTTAAAGGCATGGTCATT+TGG | + | chr4_3:72379461-72379480 | None:intergenic | 35.0% |
| GCTTACAAGCTCAGATTTAA+AGG | + | chr4_3:72379474-72379493 | None:intergenic | 35.0% | |
| AATCTGAGCTTGTAAGCTAA+AGG | - | chr4_3:72379477-72379496 | Msa0661160:intron | 35.0% | |
| ATCTGAGCTTGTAAGCTAAA+GGG | - | chr4_3:72379478-72379497 | Msa0661160:intron | 35.0% | |
| ! | GCTAAAGGGTTCTTTTCTTT+TGG | - | chr4_3:72379492-72379511 | Msa0661160:intron | 35.0% |
| TTTCTTAGACCCTGTTTGTT+TGG | - | chr4_3:72379820-72379839 | Msa0661160:intron | 35.0% | |
| AATAAGCGGAAACCAAGTTA+TGG | - | chr4_3:72379942-72379961 | Msa0661160:intron | 35.0% | |
| CTTATGACACATCCATAACT+TGG | + | chr4_3:72379957-72379976 | None:intergenic | 35.0% | |
| ! | CACAGGTCTATTTTATGGAT+TGG | + | chr4_3:72380050-72380069 | None:intergenic | 35.0% |
| !! | AAGAGCACAGGTCTATTTTA+TGG | + | chr4_3:72380055-72380074 | None:intergenic | 35.0% |
| !!! | TTTTAGAGTCCTACAGATGT+AGG | + | chr4_3:72380252-72380271 | None:intergenic | 35.0% |
| TAGTAAGCTGTGGTAAATAG+TGG | - | chr4_3:72380337-72380356 | Msa0661160:intron | 35.0% | |
| !! | CTATCTGCTATTTCACATAG+CGG | + | chr4_3:72380375-72380394 | None:intergenic | 35.0% |
| ATAAATGGTACACATAGTGC+AGG | - | chr4_3:72380586-72380605 | Msa0661160:intron | 35.0% | |
| CAGTAGCAGGAAAAAAAATC+GGG | + | chr4_3:72380638-72380657 | None:intergenic | 35.0% | |
| GCAGTAGCAGGAAAAAAAAT+CGG | + | chr4_3:72380639-72380658 | None:intergenic | 35.0% | |
| !! | CAGATTTTGAGGGAAAAAAC+TGG | + | chr4_3:72380743-72380762 | None:intergenic | 35.0% |
| ! | GTATAGCATAGCAGATTTTG+AGG | + | chr4_3:72380754-72380773 | None:intergenic | 35.0% |
| CAAATAACAGTGTGCTATAG+CGG | + | chr4_3:72380776-72380795 | None:intergenic | 35.0% | |
| ! | CACACTGTTATTTGACAACA+CGG | - | chr4_3:72380782-72380801 | Msa0661160:intron | 35.0% |
| ! | ACACTGTTATTTGACAACAC+GGG | - | chr4_3:72380783-72380802 | Msa0661160:intron | 35.0% |
| CAAAATGAAAGACACGTATG+GGG | + | chr4_3:72380921-72380940 | None:intergenic | 35.0% | |
| TTTATTCTCACAAAACCCTC+AGG | + | chr4_3:72381397-72381416 | None:intergenic | 35.0% | |
| !! | AGTTTTAGCAAAAGTTCGGA+AGG | - | chr4_3:72381538-72381557 | Msa0661160:intron | 35.0% |
| !! | TTCGGAAGGTATTTACCATA+GGG | - | chr4_3:72381552-72381571 | Msa0661160:intron | 35.0% |
| !! | AGCGAGTTTTGATGTTTATC+GGG | - | chr4_3:72381681-72381700 | Msa0661160:intron | 35.0% |
| ATCAACAGTACACTAACAGA+AGG | + | chr4_3:72381735-72381754 | None:intergenic | 35.0% | |
| AGGTTCACCTTATTAGTGTA+AGG | - | chr4_3:72382064-72382083 | Msa0661160:intron | 35.0% | |
| TGTGCATTCCATAACTACAA+TGG | + | chr4_3:72382104-72382123 | None:intergenic | 35.0% | |
| AATGCACACCTAATGTCTAT+GGG | - | chr4_3:72382116-72382135 | Msa0661160:intron | 35.0% | |
| GATTATTTGATGAGTGGTTC+TGG | - | chr4_3:72382251-72382270 | Msa0661160:intron | 35.0% | |
| AATGTAACGATTGCCATTAC+GGG | + | chr4_3:72382559-72382578 | None:intergenic | 35.0% | |
| GAATGTAACGATTGCCATTA+CGG | + | chr4_3:72382560-72382579 | None:intergenic | 35.0% | |
| GGCAATCGTTACATTCTTAA+CGG | - | chr4_3:72382564-72382583 | Msa0661160:intron | 35.0% | |
| ! | GAACCATTAGGTCATCTTTT+GGG | + | chr4_3:72382715-72382734 | None:intergenic | 35.0% |
| ! | AGAACCATTAGGTCATCTTT+TGG | + | chr4_3:72382716-72382735 | None:intergenic | 35.0% |
| !! | CAAGTATGATTTTCAGGCTA+AGG | + | chr4_3:72382889-72382908 | None:intergenic | 35.0% |
| CTTAGCCTGAAAATCATACT+TGG | - | chr4_3:72382887-72382906 | Msa0661160:intron | 35.0% | |
| TAGCCTGAAAATCATACTTG+GGG | - | chr4_3:72382889-72382908 | Msa0661160:intron | 35.0% | |
| TGCAGTATATGTGAACTACA+TGG | - | chr4_3:72383058-72383077 | Msa0661160:intron | 35.0% | |
| !! | GTTTTGAGTCAACACGGATT+TGG | + | chr4_3:72379036-72379055 | None:intergenic | 40.0% |
| GTCACGTTCTCTGTTTCATT+TGG | + | chr4_3:72379099-72379118 | None:intergenic | 40.0% | |
| TCTGATAGAGCAAGGAATTC+AGG | + | chr4_3:72379198-72379217 | None:intergenic | 40.0% | |
| ATAGTGAAGTTGAAGTGCAG+AGG | - | chr4_3:72379428-72379447 | Msa0661160:intron | 40.0% | |
| TAGTGAAGTTGAAGTGCAGA+GGG | - | chr4_3:72379429-72379448 | Msa0661160:intron | 40.0% | |
| CAAGCTCAGATTTAAAGGCA+TGG | + | chr4_3:72379469-72379488 | None:intergenic | 40.0% | |
| GTCTGATCGAATGACATGTT+CGG | - | chr4_3:72379548-72379567 | Msa0661160:intron | 40.0% | |
| ! | TTGTGTTGATGTGTCAGTGT+CGG | - | chr4_3:72379626-72379645 | Msa0661160:intron | 40.0% |
| !! | AGATGTTCTGAAAGCTATCC+TGG | - | chr4_3:72379904-72379923 | Msa0661160:intron | 40.0% |
| GCAGAGCTTATGGAAATAAG+CGG | - | chr4_3:72379928-72379947 | Msa0661160:intron | 40.0% | |
| AAGTCCTATCCTACATCTGT+AGG | - | chr4_3:72380240-72380259 | Msa0661160:intron | 40.0% | |
| !! | GTTTCTGGTAGAGGATATAG+TGG | + | chr4_3:72380661-72380680 | None:intergenic | 40.0% |
| TCTACCAGAAACTCGAATAG+CGG | - | chr4_3:72380669-72380688 | Msa0661160:intron | 40.0% | |
| ! | GGTTATTTCAAGCAGAACAG+TGG | - | chr4_3:72380967-72380986 | Msa0661160:intron | 40.0% |
| !! | GGTGGAGCAAAAGTTTTATG+AGG | - | chr4_3:72380998-72381017 | Msa0661160:intron | 40.0% |
| !! | AAGTTTTATGAGGAGCAGAC+TGG | - | chr4_3:72381008-72381027 | Msa0661160:intron | 40.0% |
| TCGAATTGTTCTTCGGAAGA+TGG | + | chr4_3:72381050-72381069 | None:intergenic | 40.0% | |
| ! | AATTGATTCCAAGGAGTACG+TGG | - | chr4_3:72381073-72381092 | Msa0661160:intron | 40.0% |
| ! | TAGTAGTGGAAGCAGTATCA+AGG | - | chr4_3:72381130-72381149 | Msa0661160:intron | 40.0% |
| ! | TGACGATGATGATGATGATG+AGG | - | chr4_3:72381184-72381203 | Msa0661160:intron | 40.0% |
| !! | GTTCGGAAGGTATTTACCAT+AGG | - | chr4_3:72381551-72381570 | Msa0661160:intron | 40.0% |
| GACTCTTCACATATAACGCA+AGG | + | chr4_3:72381650-72381669 | None:intergenic | 40.0% | |
| CAAAACTCGCTAAAAGAGTG+AGG | + | chr4_3:72381672-72381691 | None:intergenic | 40.0% | |
| CAGTACACTAACAGAAGGTA+GGG | + | chr4_3:72381730-72381749 | None:intergenic | 40.0% | |
| ACAGTACACTAACAGAAGGT+AGG | + | chr4_3:72381731-72381750 | None:intergenic | 40.0% | |
| ! | GTTGATTGTACTGATGAGTG+CGG | - | chr4_3:72381749-72381768 | Msa0661160:intron | 40.0% |
| CCAACAATCATGAAAGAGAC+TGG | + | chr4_3:72381975-72381994 | None:intergenic | 40.0% | |
| CCAGTCTCTTTCATGATTGT+TGG | - | chr4_3:72381972-72381991 | Msa0661160:intron | 40.0% | |
| AGTTAGATTTCCTGAATGGC+AGG | - | chr4_3:72382044-72382063 | Msa0661160:intron | 40.0% | |
| GAATGCACACCTAATGTCTA+TGG | - | chr4_3:72382115-72382134 | Msa0661160:intron | 40.0% | |
| GGCCTTAAGCTTGAATAACT+GGG | - | chr4_3:72382137-72382156 | Msa0661160:intron | 40.0% | |
| CACCCAGTTATTCAAGCTTA+AGG | + | chr4_3:72382142-72382161 | None:intergenic | 40.0% | |
| AGGCATGAAATAAGGCAACA+AGG | - | chr4_3:72382200-72382219 | Msa0661160:intron | 40.0% | |
| AAATAAGGCAACAAGGTCAC+TGG | - | chr4_3:72382207-72382226 | Msa0661160:intron | 40.0% | |
| GCTCATTAGTACAGTGATGA+TGG | + | chr4_3:72382333-72382352 | None:intergenic | 40.0% | |
| ATGTAACGATTGCCATTACG+GGG | + | chr4_3:72382558-72382577 | None:intergenic | 40.0% | |
| GTTACATTCTTAACGGCCTT+GGG | - | chr4_3:72382571-72382590 | Msa0661160:intron | 40.0% | |
| !! | ATGTGGAATAGAGGTGTTAG+GGG | + | chr4_3:72382610-72382629 | None:intergenic | 40.0% |
| !! | CATGTGGAATAGAGGTGTTA+GGG | + | chr4_3:72382611-72382630 | None:intergenic | 40.0% |
| TCTATTCCACATGCTCTGTA+CGG | - | chr4_3:72382618-72382637 | Msa0661160:intron | 40.0% | |
| TGTAGATCGTGAAAATGACG+TGG | - | chr4_3:72382642-72382661 | Msa0661160:intron | 40.0% | |
| GCTGGTTAATCATGAGATGA+AGG | - | chr4_3:72382677-72382696 | Msa0661160:intron | 40.0% | |
| GATCCCAAAAGATGACCTAA+TGG | - | chr4_3:72382709-72382728 | Msa0661160:CDS | 40.0% | |
| TTCTGCAATGCAGAACCATT+AGG | + | chr4_3:72382727-72382746 | None:intergenic | 40.0% | |
| GTTCTGCATTGCAGAAAGAA+GGG | - | chr4_3:72382731-72382750 | Msa0661160:intron | 40.0% | |
| TTCTGCATTGCAGAAAGAAG+GGG | - | chr4_3:72382732-72382751 | Msa0661160:intron | 40.0% | |
| GGGGAAAATCTAGAAGACAA+AGG | - | chr4_3:72382751-72382770 | Msa0661160:intron | 40.0% | |
| CAGGATAGAGATATAATCCC+AGG | + | chr4_3:72382915-72382934 | None:intergenic | 40.0% | |
| CTGGGATTATATCTCTATCC+TGG | - | chr4_3:72382913-72382932 | Msa0661160:intron | 40.0% | |
| ! | TTCTCACCATTTGGGTTCTT+AGG | - | chr4_3:72383445-72383464 | Msa0661160:five_prime_UTR | 40.0% |
| AATGAGCACGTTGAAGGAGT+GGG | + | chr4_3:72379242-72379261 | None:intergenic | 45.0% | |
| AGAGAGAATGAGCACGTTGA+AGG | + | chr4_3:72379248-72379267 | None:intergenic | 45.0% | |
| TGTCATTCGATCAGACGTGT+CGG | + | chr4_3:72379544-72379563 | None:intergenic | 45.0% | |
| AAGTGTGTGCCAAAAGAGAC+TGG | - | chr4_3:72379753-72379772 | Msa0661160:intron | 45.0% | |
| ! | GAAGTCGTTCCAGTCTCTTT+TGG | + | chr4_3:72379765-72379784 | None:intergenic | 45.0% |
| CGACTTCCAGATTTGAGTGA+AGG | - | chr4_3:72379778-72379797 | Msa0661160:intron | 45.0% | |
| ATTTCCATAAGCTCTGCACC+AGG | + | chr4_3:72379925-72379944 | None:intergenic | 45.0% | |
| ACATTCCTCGTCTTTACTGC+TGG | - | chr4_3:72380176-72380195 | Msa0661160:intron | 45.0% | |
| CAAAACCAGCAGTAAAGACG+AGG | + | chr4_3:72380184-72380203 | None:intergenic | 45.0% | |
| GAGTCCTACAGATGTAGGAT+AGG | + | chr4_3:72380247-72380266 | None:intergenic | 45.0% | |
| CAAATAGAGCAAGCCGCATA+GGG | - | chr4_3:72380404-72380423 | Msa0661160:intron | 45.0% | |
| AAATAGAGCAAGCCGCATAG+GGG | - | chr4_3:72380405-72380424 | Msa0661160:intron | 45.0% | |
| TAGGGGTTGGAATGAGTCAA+CGG | - | chr4_3:72380422-72380441 | Msa0661160:intron | 45.0% | |
| !! | GCTATTCGAGTTTCTGGTAG+AGG | + | chr4_3:72380670-72380689 | None:intergenic | 45.0% |
| GGTTTCAGTTTACATTGCCG+AGG | - | chr4_3:72380804-72380823 | Msa0661160:intron | 45.0% | |
| CAAAACGAAGACAACAGCCT+CGG | + | chr4_3:72380824-72380843 | None:intergenic | 45.0% | |
| AGCAGAACAGTGGCAAGATA+TGG | - | chr4_3:72380977-72380996 | Msa0661160:intron | 45.0% | |
| AGAACAGTGGCAAGATATGG+TGG | - | chr4_3:72380980-72380999 | Msa0661160:intron | 45.0% | |
| CAATTTCTCCACGTACTCCT+TGG | + | chr4_3:72381084-72381103 | None:intergenic | 45.0% | |
| AGTACGTGGAGAAATTGCCA+GGG | - | chr4_3:72381087-72381106 | Msa0661160:intron | 45.0% | |
| !! | GTTGTTGGTGGTAGTAGTAG+TGG | - | chr4_3:72381116-72381135 | Msa0661160:intron | 45.0% |
| ! | AGTTCTGATATGTGAGCCTG+AGG | - | chr4_3:72381378-72381397 | Msa0661160:CDS | 45.0% |
| GTTCTGATATGTGAGCCTGA+GGG | - | chr4_3:72381379-72381398 | Msa0661160:CDS | 45.0% | |
| ! | CATTCTAGTTGCAAGCCCTA+TGG | + | chr4_3:72381570-72381589 | None:intergenic | 45.0% |
| ATAAGGTGAACCTGCCATTC+AGG | + | chr4_3:72382057-72382076 | None:intergenic | 45.0% | |
| GCTTAAGGCCCATAGACATT+AGG | + | chr4_3:72382127-72382146 | None:intergenic | 45.0% | |
| GGGCCTTAAGCTTGAATAAC+TGG | - | chr4_3:72382136-72382155 | Msa0661160:intron | 45.0% | |
| !! | AACAAGGTCACTGGTTCTAG+TGG | - | chr4_3:72382216-72382235 | Msa0661160:intron | 45.0% |
| !! | ATTTGATGAGTGGTTCTGGG+AGG | - | chr4_3:72382255-72382274 | Msa0661160:intron | 45.0% |
| TTTCAGTTATGGACGGAGAG+TGG | - | chr4_3:72382457-72382476 | Msa0661160:intron | 45.0% | |
| CGTTACATTCTTAACGGCCT+TGG | - | chr4_3:72382570-72382589 | Msa0661160:intron | 45.0% | |
| !! | GCATGTGGAATAGAGGTGTT+AGG | + | chr4_3:72382612-72382631 | None:intergenic | 45.0% |
| GTACAGAGCATGTGGAATAG+AGG | + | chr4_3:72382619-72382638 | None:intergenic | 45.0% | |
| CTCATGATTAACCAGCGTGT+AGG | + | chr4_3:72382673-72382692 | None:intergenic | 45.0% | |
| GGTTCTGCATTGCAGAAAGA+AGG | - | chr4_3:72382730-72382749 | Msa0661160:intron | 45.0% | |
| ! | AGGCCCCAAGTATGATTTTC+AGG | + | chr4_3:72382895-72382914 | None:intergenic | 45.0% |
| TGAAAATCATACTTGGGGCC+TGG | - | chr4_3:72382894-72382913 | Msa0661160:intron | 45.0% | |
| GAAAATCATACTTGGGGCCT+GGG | - | chr4_3:72382895-72382914 | Msa0661160:intron | 45.0% | |
| GACTACACAAGTTCTGTTCC+AGG | + | chr4_3:72382934-72382953 | None:intergenic | 45.0% | |
| !! | TTCAGCGTCCTTGTTGCTTT+GGG | - | chr4_3:72383100-72383119 | Msa0661160:intron | 45.0% |
| TACAAACAGCAGCTCATAGC+TGG | + | chr4_3:72383219-72383238 | None:intergenic | 45.0% | |
| ! | TATTGCTTATGGCTTGCGAC+TGG | - | chr4_3:72383252-72383271 | Msa0661160:CDS | 45.0% |
| ! | ATTGCTTATGGCTTGCGACT+GGG | - | chr4_3:72383253-72383272 | Msa0661160:CDS | 45.0% |
| CATGAAACTCAAACGCAGAC+AGG | + | chr4_3:72383411-72383430 | None:intergenic | 45.0% | |
| ! | CTGTCTGCGTTTGAGTTTCA+TGG | - | chr4_3:72383409-72383428 | Msa0661160:exon | 45.0% |
| ! | CACCATTTGGGTTCTTAGGT+TGG | - | chr4_3:72383449-72383468 | Msa0661160:five_prime_UTR | 45.0% |
| !!! | TTTTAAAAATTTGTTATAAA+TGG | - | chr4_3:72380571-72380590 | Msa0661160:intron | 5.0% |
| GATCAGGGTCTGATAGAGCA+AGG | + | chr4_3:72379206-72379225 | None:intergenic | 50.0% | |
| !! | GGAGTGTCGCAAGATGATCA+GGG | + | chr4_3:72379221-72379240 | None:intergenic | 50.0% |
| GAATGAGCACGTTGAAGGAG+TGG | + | chr4_3:72379243-72379262 | None:intergenic | 50.0% | |
| GGTAGAAGTGAGTTTGGCGA+GGG | + | chr4_3:72379274-72379293 | None:intergenic | 50.0% | |
| CTATCCTGGTGCAGAGCTTA+TGG | - | chr4_3:72379918-72379937 | Msa0661160:intron | 50.0% | |
| ! | GCATGGTTGAGAAAGAGCAC+AGG | + | chr4_3:72380067-72380086 | None:intergenic | 50.0% |
| ! | ATGCGGCTTGCTCTATTTGC+AGG | + | chr4_3:72380403-72380422 | None:intergenic | 50.0% |
| GCAAATAGAGCAAGCCGCAT+AGG | - | chr4_3:72380403-72380422 | Msa0661160:intron | 50.0% | |
| GACTCATTCCAACCCCTATG+CGG | + | chr4_3:72380420-72380439 | None:intergenic | 50.0% | |
| GAGGATATAGTGGCAGTAGC+AGG | + | chr4_3:72380651-72380670 | None:intergenic | 50.0% | |
| ! | AGGAGCAGACTGGTCAAAAG+AGG | - | chr4_3:72381018-72381037 | Msa0661160:intron | 50.0% |
| GAGTACGTGGAGAAATTGCC+AGG | - | chr4_3:72381086-72381105 | Msa0661160:intron | 50.0% | |
| GTACGTGGAGAAATTGCCAG+GGG | - | chr4_3:72381088-72381107 | Msa0661160:intron | 50.0% | |
| ! | ACGACCTTTCAGGTCGAAGT+TGG | - | chr4_3:72382482-72382501 | Msa0661160:intron | 50.0% |
| GTGTCCAACTTCGACCTGAA+AGG | + | chr4_3:72382489-72382508 | None:intergenic | 50.0% | |
| ! | TGGACACTTGATGACCGTTC+AGG | - | chr4_3:72382502-72382521 | Msa0661160:intron | 50.0% |
| GATGACCGTTCAGGTCGTAA+AGG | - | chr4_3:72382511-72382530 | Msa0661160:intron | 50.0% | |
| !! | GTTGGCCTTTACGACCTGAA+CGG | + | chr4_3:72382519-72382538 | None:intergenic | 50.0% |
| GGATAGGAGTTGCAGTAGGT+TGG | + | chr4_3:72382537-72382556 | None:intergenic | 50.0% | |
| TGCAACTCCTATCCCCGTAA+TGG | - | chr4_3:72382543-72382562 | Msa0661160:intron | 50.0% | |
| ACGATTGCCATTACGGGGAT+AGG | + | chr4_3:72382553-72382572 | None:intergenic | 50.0% | |
| CTACATCCGTACAGAGCATG+TGG | + | chr4_3:72382627-72382646 | None:intergenic | 50.0% | |
| ! | GTTCAGCGTCCTTGTTGCTT+TGG | - | chr4_3:72383099-72383118 | Msa0661160:intron | 50.0% |
| !! | TCAGCGTCCTTGTTGCTTTG+GGG | - | chr4_3:72383101-72383120 | Msa0661160:intron | 50.0% |
| ! | TTGCTTATGGCTTGCGACTG+GGG | - | chr4_3:72383254-72383273 | Msa0661160:CDS | 50.0% |
| !! | GGGAGTGTCGCAAGATGATC+AGG | + | chr4_3:72379222-72379241 | None:intergenic | 55.0% |
| GGGTAGAAGTGAGTTTGGCG+AGG | + | chr4_3:72379275-72379294 | None:intergenic | 55.0% | |
| !! | ACATGTTCGGTGTCCGACAC+TGG | - | chr4_3:72379561-72379580 | Msa0661160:intron | 55.0% |
| TTGCCAGGGGAGGATGTTGT+TGG | - | chr4_3:72381101-72381120 | Msa0661160:intron | 55.0% | |
| GAGAGTGGAGACGACCTTTC+AGG | - | chr4_3:72382472-72382491 | Msa0661160:intron | 55.0% | |
| ACGGGGATAGGAGTTGCAGT+AGG | + | chr4_3:72382541-72382560 | None:intergenic | 55.0% | |
| ACGTGGCTTATCCTACACGC+TGG | - | chr4_3:72382659-72382678 | Msa0661160:intron | 55.0% | |
| ACACGAGACGCGTTCTCCTT+TGG | + | chr4_3:72382821-72382840 | None:intergenic | 55.0% | |
| TGAGTCGCCCCAAAGCAACA+AGG | + | chr4_3:72383111-72383130 | None:intergenic | 55.0% | |
| TGGGGCGACTCATCAAAGCT+TGG | - | chr4_3:72383119-72383138 | Msa0661160:intron | 55.0% | |
| !! | GTACGGTGTCGTGCCAGTGT+CGG | + | chr4_3:72379577-72379596 | None:intergenic | 60.0% |
| AGAGCAAGCCGCATAGGGGT+TGG | - | chr4_3:72380409-72380428 | Msa0661160:intron | 60.0% | |
| ! | GCGGCCGCTATTCGAGTTTC+TGG | + | chr4_3:72380676-72380695 | None:intergenic | 60.0% |
| CGTGGAGAAATTGCCAGGGG+AGG | - | chr4_3:72381091-72381110 | Msa0661160:intron | 60.0% | |
| CCACCAACAACATCCTCCCC+TGG | + | chr4_3:72381107-72381126 | None:intergenic | 60.0% | |
| CCAGGGGAGGATGTTGTTGG+TGG | - | chr4_3:72381104-72381123 | Msa0661160:intron | 60.0% | |
| ! | GAGGTGTTAGGGGCCACAGA+AGG | + | chr4_3:72382600-72382619 | None:intergenic | 60.0% |
| CGGCCTTGGGACTCCTTCTG+TGG | - | chr4_3:72382584-72382603 | Msa0661160:intron | 65.0% | |
| GGGCCACAGAAGGAGTCCCA+AGG | + | chr4_3:72382590-72382609 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 72379026 | 72383472 | 72379026 | ID=Msa0661160;Name=Msa0661160 |
| chr4_3 | mRNA | 72379026 | 72383472 | 72379026 | ID=Msa0661160-mRNA-1;Parent=Msa0661160;Name=Msa0661160-mRNA-1;_AED=0.09;_eAED=0.09;_QI=61|0.5|0.4|1|0.5|0.6|5|264|187 |
| chr4_3 | exon | 72379026 | 72379435 | 72379026 | ID=Msa0661160-mRNA-1:exon:21690;Parent=Msa0661160-mRNA-1 |
| chr4_3 | exon | 72381376 | 72381516 | 72381376 | ID=Msa0661160-mRNA-1:exon:21689;Parent=Msa0661160-mRNA-1 |
| chr4_3 | exon | 72382699 | 72382748 | 72382699 | ID=Msa0661160-mRNA-1:exon:21688;Parent=Msa0661160-mRNA-1 |
| chr4_3 | exon | 72383057 | 72383066 | 72383057 | ID=Msa0661160-mRNA-1:exon:21687;Parent=Msa0661160-mRNA-1 |
| chr4_3 | exon | 72383195 | 72383472 | 72383195 | ID=Msa0661160-mRNA-1:exon:21686;Parent=Msa0661160-mRNA-1 |
| chr4_3 | five_prime_UTR | 72383412 | 72383472 | 72383412 | ID=Msa0661160-mRNA-1:five_prime_utr;Parent=Msa0661160-mRNA-1 |
| chr4_3 | CDS | 72383195 | 72383411 | 72383195 | ID=Msa0661160-mRNA-1:cds;Parent=Msa0661160-mRNA-1 |
| chr4_3 | CDS | 72383057 | 72383066 | 72383057 | ID=Msa0661160-mRNA-1:cds;Parent=Msa0661160-mRNA-1 |
| chr4_3 | CDS | 72382699 | 72382748 | 72382699 | ID=Msa0661160-mRNA-1:cds;Parent=Msa0661160-mRNA-1 |
| chr4_3 | CDS | 72381376 | 72381516 | 72381376 | ID=Msa0661160-mRNA-1:cds;Parent=Msa0661160-mRNA-1 |
| chr4_3 | CDS | 72379290 | 72379435 | 72379290 | ID=Msa0661160-mRNA-1:cds;Parent=Msa0661160-mRNA-1 |
| chr4_3 | three_prime_UTR | 72379026 | 72379289 | 72379026 | ID=Msa0661160-mRNA-1:three_prime_utr;Parent=Msa0661160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
